+D GENES KO #

  KEGG Orthology (KO) - Rathayibacter toxicus WAC3373

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A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:rtc00010] D APU90_01550 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D APU90_10340 glucose-6-phosphate isomerase K13810 tal-pgi; transaldolase / glucose-6-phosphate isomerase [EC:2.2.1.2 5.3.1.9] D APU90_04430 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D APU90_08830 glpX; fructose 1,6-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D APU90_08825 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D APU90_10310 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D APU90_10300 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D APU90_10305 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D APU90_03205 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D APU90_02725 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D APU90_10140 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D APU90_01065 alpha-ketoglutarate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D APU90_00265 dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D APU90_00260 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D APU90_05990 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D APU90_07690 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D APU90_05305 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D APU90_03310 aldose epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D APU90_04035 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D APU90_00305 polyphosphate glucokinase K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63] D APU90_06950 polyphosphate glucokinase K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63] D APU90_07975 phosphoenolpyruvate carboxykinase K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] C 00020 Citrate cycle (TCA cycle) [PATH:rtc00020] D APU90_08980 type II citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D APU90_00180 acnA; aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D APU90_03365 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D APU90_08600 kgd; alpha-ketoglutarate decarboxylase K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61] D APU90_00260 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D APU90_05990 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D APU90_03390 succinyl-CoA synthetase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D APU90_03395 succinyl-CoA synthetase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D APU90_08050 fumarate reductase K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D APU90_08045 succinate dehydrogenase K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D APU90_08060 succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit D APU90_08055 succinate dehydrogenase K00242 sdhD; succinate dehydrogenase membrane anchor subunit D APU90_08790 aspA; class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D APU90_07630 malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4] D APU90_07975 phosphoenolpyruvate carboxykinase K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D APU90_01065 alpha-ketoglutarate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D APU90_00265 dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:rtc00030] D APU90_10340 glucose-6-phosphate isomerase K13810 tal-pgi; transaldolase / glucose-6-phosphate isomerase [EC:2.2.1.2 5.3.1.9] D APU90_01590 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D APU90_02370 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D APU90_10335 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D APU90_10325 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31] D APU90_02760 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D APU90_05565 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D APU90_10075 ribulose phosphate epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D APU90_10350 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D APU90_10345 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D APU90_00480 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D APU90_04810 2-deoxyribose-5-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D APU90_04035 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D APU90_02765 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D APU90_06785 hypothetical protein K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D APU90_05360 gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17] D APU90_01640 hypothetical protein K00851 idnK; gluconokinase [EC:2.7.1.12] D APU90_08825 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D APU90_08830 glpX; fructose 1,6-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D APU90_04430 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] C 00040 Pentose and glucuronate interconversions [PATH:rtc00040] D APU90_07025 hypothetical protein K01728 pel; pectate lyase [EC:4.2.2.2] D APU90_06825 polygalacturonase K01184 E3.2.1.15; polygalacturonase [EC:3.2.1.15] D APU90_07660 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D APU90_02940 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D APU90_10075 ribulose phosphate epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D APU90_07535 xylulose kinase K00854 xylB; xylulokinase [EC:2.7.1.17] D APU90_07540 xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] C 00051 Fructose and mannose metabolism [PATH:rtc00051] D APU90_02990 hypothetical protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D APU90_08595 hypothetical protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D APU90_08310 hypothetical protein K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D APU90_08115 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D APU90_08065 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D APU90_08285 GDP-mannose 4,6 dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D APU90_08290 GDP-mannose 4,6 dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D APU90_04430 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D APU90_08830 glpX; fructose 1,6-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D APU90_03655 mannitol-1-phosphate 5-dehydrogenase K00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17] D APU90_08030 hypothetical protein K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D APU90_07540 xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] D APU90_08825 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D APU90_10310 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D APU90_00480 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D APU90_06790 hypothetical protein K17195 alsE; D-allulose-6-phosphate 3-epimerase [EC:5.1.3.-] D APU90_08025 PTS fructose transporter subunit IIA K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202] D APU90_08020 PTS fructose transporter subunit IIBC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D APU90_03660 PTS mannitol transporter subunit IIA K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197] D APU90_03665 PTS mannitol transporter subunit IIB K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] C 00052 Galactose metabolism [PATH:rtc00052] D APU90_03310 aldose epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D APU90_03325 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D APU90_03320 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D APU90_08315 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D APU90_09575 hypothetical protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D APU90_09625 hypothetical protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D APU90_02940 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D APU90_04035 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D APU90_01550 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D APU90_04430 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D APU90_07235 alpha-amylase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] C 00053 Ascorbate and aldarate metabolism [PATH:rtc00053] D APU90_07660 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D APU90_05360 gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17] D APU90_08105 hypothetical protein K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D APU90_08110 PTS ascorbate transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] C 00500 Starch and sucrose metabolism [PATH:rtc00500] D APU90_09710 hypothetical protein K00696 E2.4.1.14; sucrose-phosphate synthase [EC:2.4.1.14] D APU90_07235 alpha-amylase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D APU90_02500 amylosucrase K05341 E2.4.1.4; amylosucrase [EC:2.4.1.4] D APU90_02940 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D APU90_04085 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D APU90_10485 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D APU90_07470 hypothetical protein K16150 K16150; glycogen synthase [EC:2.4.1.11] D APU90_00720 glycogen-branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D APU90_00715 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase K16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16] D APU90_10490 glycosyl transferase family 1 K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342] D APU90_10555 glycogen debranching protein K01214 ISA; isoamylase [EC:3.2.1.68] D APU90_10560 maltooligosyl trehalose synthase K06044 treY; (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase [EC:5.4.99.15] D APU90_10565 malto-oligosyltrehalose trehalohydrolase K01236 treZ; maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141] D APU90_02345 trehalose phosphatase K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] D APU90_06255 kojibiose phosphorylase K05342 treP; alpha,alpha-trehalose phosphorylase [EC:2.4.1.64] D APU90_04035 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D APU90_01550 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D APU90_10340 glucose-6-phosphate isomerase K13810 tal-pgi; transaldolase / glucose-6-phosphate isomerase [EC:2.2.1.2 5.3.1.9] D APU90_02990 hypothetical protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D APU90_08595 hypothetical protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:rtc00520] D APU90_02990 hypothetical protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D APU90_08595 hypothetical protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D APU90_03550 glutamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D APU90_03560 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D APU90_02770 glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D APU90_09475 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D APU90_07310 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D APU90_03985 hypothetical protein K05304 NANS; sialic acid synthase [EC:2.5.1.56 2.5.1.57 2.5.1.132] D APU90_01550 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D APU90_00305 polyphosphate glucokinase K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63] D APU90_06950 polyphosphate glucokinase K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63] D APU90_04035 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D APU90_02940 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D APU90_07660 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D APU90_03325 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D APU90_03320 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D APU90_08315 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D APU90_09575 hypothetical protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D APU90_09625 hypothetical protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D APU90_10340 glucose-6-phosphate isomerase K13810 tal-pgi; transaldolase / glucose-6-phosphate isomerase [EC:2.2.1.2 5.3.1.9] D APU90_08310 hypothetical protein K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D APU90_08115 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D APU90_08065 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D APU90_08285 GDP-mannose 4,6 dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D APU90_08290 GDP-mannose 4,6 dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D APU90_10485 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] C 00620 Pyruvate metabolism [PATH:rtc00620] D APU90_07690 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D APU90_05305 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D APU90_01065 alpha-ketoglutarate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D APU90_00265 dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D APU90_00260 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D APU90_05990 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D APU90_07605 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D APU90_07600 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D APU90_10140 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D APU90_08140 acetyl-/propionyl-CoA carboxylase subunit alpha K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D APU90_07630 malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4] D APU90_08790 aspA; class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D APU90_01595 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D APU90_07975 phosphoenolpyruvate carboxykinase K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D APU90_01235 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:rtc00630] D APU90_07690 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D APU90_05305 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D APU90_08980 type II citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D APU90_00180 acnA; aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D APU90_08165 methylmalonyl-CoA carboxyltransferase K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15] D APU90_08140 acetyl-/propionyl-CoA carboxylase subunit alpha K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D APU90_06275 catalase K03781 katE; catalase [EC:1.11.1.6] D APU90_05705 haloacid dehalogenase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D APU90_00280 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D APU90_00290 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D APU90_03335 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D APU90_08910 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D APU90_08900 glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D APU90_00260 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D APU90_05990 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D APU90_08905 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein D APU90_08600 kgd; alpha-ketoglutarate decarboxylase K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61] D APU90_03345 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] C 00640 Propanoate metabolism [PATH:rtc00640] D APU90_07690 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D APU90_05305 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D APU90_07605 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D APU90_07600 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D APU90_04905 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D APU90_01735 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D APU90_01730 2-oxoisovalerate dehydrogenase K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D APU90_04900 pyruvate dehydrogenase K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D APU90_04895 branched-chain alpha-keto acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D APU90_00260 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D APU90_05990 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D APU90_06575 acyl-CoA dehydrogenase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6] D APU90_08140 acetyl-/propionyl-CoA carboxylase subunit alpha K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D APU90_09240 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D APU90_09250 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D APU90_08165 methylmalonyl-CoA carboxyltransferase K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15] D APU90_03395 succinyl-CoA synthetase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D APU90_03390 succinyl-CoA synthetase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] C 00650 Butanoate metabolism [PATH:rtc00650] D APU90_08050 fumarate reductase K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D APU90_08045 succinate dehydrogenase K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D APU90_08060 succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit D APU90_08055 succinate dehydrogenase K00242 sdhD; succinate dehydrogenase membrane anchor subunit D APU90_09240 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D APU90_09250 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D APU90_07865 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D APU90_02335 acetolactate synthase 1 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D APU90_02330 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:rtc00660] D APU90_02335 acetolactate synthase 1 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D APU90_02330 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D APU90_03395 succinyl-CoA synthetase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D APU90_03390 succinyl-CoA synthetase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D APU90_09465 3-isopropylmalate dehydratase K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D APU90_09470 isopropylmalate isomerase K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D APU90_02280 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:rtc00562] D APU90_07230 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D APU90_10310 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:rtc00190] D APU90_02710 NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D APU90_06720 pyridine nucleotide-disulfide oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D APU90_08050 fumarate reductase K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D APU90_08045 succinate dehydrogenase K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D APU90_08060 succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit D APU90_08055 succinate dehydrogenase K00242 sdhD; succinate dehydrogenase membrane anchor subunit D APU90_01365 ubiquinol-cytochrome C reductase K03890 qcrA; quinol---cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D APU90_01370 ubiquinol-cytochrome c reductase cytochrome b subunit K03891 qcrB; quinol---cytochrome-c reductase cytochrome b subunit [EC:7.1.1.8] D APU90_01360 cystathionine beta-lyase K03889 qcrC; quinol---cytochrome-c reductase cytochrome c subunit [EC:7.1.1.8] D APU90_10355 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D APU90_01375 cytochrome c oxidase subunit IV K27109 ctaF; cytochrome c oxidase subunit IV [EC:7.1.1.9] D APU90_01355 cytochrome B K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D APU90_01380 cytochrome ubiquinol oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D APU90_01385 cytochrome C oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D APU90_09185 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D APU90_09195 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D APU90_09190 ATP synthase F0F1 subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D APU90_09180 ATP synthase F0F1 subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D APU90_09200 ATP synthase F0F1 subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D APU90_09165 ATP synthase F0F1 subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D APU90_09175 ATP synthase F0F1 subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D APU90_09170 ATP F0F1 synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D APU90_06620 inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D APU90_03240 polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D APU90_08870 polyphosphate kinase K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:rtc00680] D APU90_03335 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D APU90_02725 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D APU90_01595 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D APU90_08825 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D APU90_08830 glpX; fructose 1,6-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D APU90_04430 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D APU90_07605 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D APU90_07600 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D APU90_07690 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D APU90_05305 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D APU90_03205 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D APU90_02310 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D APU90_03085 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D APU90_10480 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D APU90_06780 hypothetical protein K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D APU90_03605 hypothetical protein K13039 comE; sulfopyruvate decarboxylase subunit beta [EC:4.1.1.79] D APU90_04225 hypothetical protein K13039 comE; sulfopyruvate decarboxylase subunit beta [EC:4.1.1.79] D APU90_09520 hypothetical protein K14941 cofC; 2-phospho-L-lactate/phosphoenolpyruvate guanylyltransferase [EC:2.7.7.68 2.7.7.105] D APU90_01015 2-phospho-L-lactate transferase K11212 cofD; LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28] D APU90_09515 F420-dependent oxidoreductase K12234 cofE; coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34] C 00910 Nitrogen metabolism [PATH:rtc00910] D APU90_00280 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D APU90_00290 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D APU90_10130 glutamate synthase subunit alpha K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D APU90_10135 gltD; glutamate synthase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] C 00920 Sulfur metabolism [PATH:rtc00920] D APU90_03595 hypothetical protein K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D APU90_04245 hypothetical protein K00299 ssuE; FMN reductase [EC:1.5.1.38] D APU90_02845 hypothetical protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D APU90_00140 thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D APU90_08670 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D APU90_07465 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:rtc00061] D APU90_08140 acetyl-/propionyl-CoA carboxylase subunit alpha K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D APU90_01085 acyl carrier protein K02078 acpP; acyl carrier protein D APU90_09585 hypothetical protein K02078 acpP; acyl carrier protein D APU90_09670 hypothetical protein K02078 acpP; acyl carrier protein D APU90_01075 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D APU90_01080 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D APU90_01090 3-oxoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D APU90_09600 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D APU90_09680 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D APU90_10475 beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D APU90_00085 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D APU90_00675 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D APU90_01555 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:rtc00071] D APU90_00165 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D APU90_06575 acyl-CoA dehydrogenase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6] D APU90_08305 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D APU90_00675 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D APU90_01555 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:rtc00561] D APU90_01345 dihydroxyacetone kinase K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121] D APU90_01340 hypothetical protein K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121] D APU90_08005 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D APU90_06300 haloacid dehalogenase K06117 E3.1.3.21; glycerol-1-phosphatase [EC:3.1.3.21] D APU90_01545 hypothetical protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D APU90_09245 acyl-phosphate glycerol 3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D APU90_09480 acyl-phosphate glycerol 3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D APU90_06635 hypothetical protein K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] C 00564 Glycerophospholipid metabolism [PATH:rtc00564] D APU90_09485 glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D APU90_07995 FAD-dependent oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D APU90_01545 hypothetical protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D APU90_09245 acyl-phosphate glycerol 3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D APU90_09480 acyl-phosphate glycerol 3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D APU90_06635 hypothetical protein K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] D APU90_03440 hypothetical protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D APU90_00765 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D APU90_02010 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D APU90_06710 cardiolipin synthase A K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism [PATH:rtc00592] D APU90_06575 acyl-CoA dehydrogenase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6] D APU90_00165 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids [PATH:rtc01040] D APU90_06575 acyl-CoA dehydrogenase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:rtc00230] D APU90_04035 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D APU90_02765 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D APU90_06785 hypothetical protein K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D APU90_06375 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D APU90_06355 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D APU90_03380 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D APU90_06235 phosphoribosylglycinamide synthetase K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3] D APU90_06265 phosphoribosylformylglycinamidine synthase K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3] D APU90_06260 phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D APU90_06380 phosphoribosylaminoimidazole synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D APU90_08180 phosphoribosylaminoimidazole carboxylase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D APU90_08185 N5-carboxyaminoimidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D APU90_04925 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D APU90_03375 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D APU90_02730 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D APU90_06795 hypothetical protein K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D APU90_06365 hypothetical protein K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D APU90_06065 HAD family hydrolase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D APU90_08120 purine nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D APU90_06630 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D APU90_03470 guanosine monophosphate reductase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D APU90_03475 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D APU90_00385 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D APU90_02465 non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D APU90_03450 guaA; GMP synthetase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D APU90_10040 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D APU90_07490 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D APU90_07495 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D APU90_01205 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1] D APU90_09830 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D APU90_06580 GTP pyrophosphokinase K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5] D APU90_06135 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D APU90_08100 adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4] D APU90_03685 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D APU90_10180 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D APU90_09770 HIT family hydrolase K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53] C 00240 Pyrimidine metabolism [PATH:rtc00240] D APU90_10030 carB; carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D APU90_10025 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D APU90_10010 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D APU90_10015 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D APU90_01405 dihydroorotate dehydrogenase 2 K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D APU90_06050 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D APU90_10035 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D APU90_00775 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D APU90_00385 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D APU90_08145 septum formation inhibitor Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D APU90_01795 CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2] D APU90_01755 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D APU90_06365 hypothetical protein K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D APU90_06065 HAD family hydrolase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D APU90_06995 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D APU90_10005 hypothetical protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D APU90_08090 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D APU90_04600 deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D APU90_07490 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D APU90_07495 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D APU90_07730 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D APU90_00195 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D APU90_08095 pyrimidine-nucleoside phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4] D APU90_07635 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D APU90_02030 FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:rtc00250] D APU90_07315 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D APU90_04870 hypothetical protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D APU90_01635 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D APU90_02095 aspA; class II fumarate hydratase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D APU90_01660 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D APU90_01850 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D APU90_06135 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D APU90_04925 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D APU90_10010 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D APU90_09240 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D APU90_09250 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D APU90_07865 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D APU90_10130 glutamate synthase subunit alpha K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D APU90_10135 gltD; glutamate synthase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D APU90_04420 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D APU90_04850 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D APU90_00280 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D APU90_00290 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D APU90_10030 carB; carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D APU90_10025 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D APU90_06260 phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D APU90_03550 glutamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D APU90_06375 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:rtc00260] D APU90_07620 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D APU90_07625 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D APU90_09065 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D APU90_09075 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D APU90_04165 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D APU90_09070 hypothetical protein K01733 thrC; threonine synthase [EC:4.2.3.1] D APU90_03335 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D APU90_03205 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D APU90_02310 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D APU90_03085 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D APU90_10480 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D APU90_06780 hypothetical protein K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D APU90_08910 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D APU90_08900 glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D APU90_00260 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D APU90_05990 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D APU90_08905 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein D APU90_00600 hypothetical protein K00301 E1.5.3.1; sarcosine oxidase [EC:1.5.3.1] D APU90_07460 cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22] D APU90_02840 serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D APU90_08745 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D APU90_10120 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D APU90_10115 tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:rtc00270] D APU90_07460 cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22] D APU90_01950 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D APU90_10055 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D APU90_05690 hypothetical protein K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D APU90_05745 modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D APU90_05685 S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D APU90_07620 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D APU90_07625 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D APU90_09065 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D APU90_08670 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D APU90_07465 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D APU90_08675 hypothetical protein K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D APU90_02275 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D APU90_07315 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D APU90_02845 hypothetical protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D APU90_00140 thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D APU90_02840 serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D APU90_02310 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D APU90_03085 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:rtc00280] D APU90_02275 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D APU90_04905 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D APU90_01735 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D APU90_01730 2-oxoisovalerate dehydrogenase K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D APU90_04900 pyruvate dehydrogenase K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D APU90_04895 branched-chain alpha-keto acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D APU90_00260 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D APU90_05990 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D APU90_00165 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D APU90_08165 methylmalonyl-CoA carboxyltransferase K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15] D APU90_08140 acetyl-/propionyl-CoA carboxylase subunit alpha K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D APU90_09240 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D APU90_09250 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:rtc00290] D APU90_08745 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D APU90_09465 3-isopropylmalate dehydratase K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D APU90_09470 isopropylmalate isomerase K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D APU90_02280 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D APU90_02335 acetolactate synthase 1 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D APU90_02330 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D APU90_02325 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D APU90_02340 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D APU90_02275 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D APU90_01235 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:rtc00300] D APU90_09065 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D APU90_07620 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D APU90_07625 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D APU90_02025 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D APU90_04000 hypothetical protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D APU90_02045 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D APU90_08985 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D APU90_01860 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D APU90_08990 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D APU90_01970 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D APU90_00990 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D APU90_09060 hypothetical protein K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D APU90_05505 GntR family transcriptional regulator K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D APU90_01495 UDP-N-acetylmuramyl peptide synthase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D APU90_01490 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:rtc00310] D APU90_00260 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D APU90_05990 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D APU90_08305 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D APU90_09240 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D APU90_09250 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D APU90_07865 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00220 Arginine biosynthesis [PATH:rtc00220] D APU90_03590 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D APU90_01855 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D APU90_01660 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D APU90_01850 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D APU90_06260 phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D APU90_00280 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D APU90_00290 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D APU90_07315 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D APU90_06740 N-acetylglutamate synthase K00619 argA; amino-acid N-acetyltransferase [EC:2.3.1.1] D APU90_01870 N-acetylglutamate synthase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D APU90_01865 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D APU90_01875 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D APU90_01860 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] C 00330 Arginine and proline metabolism [PATH:rtc00330] D APU90_03370 acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57] D APU90_02685 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D APU90_07005 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D APU90_04420 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D APU90_04850 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D APU90_10590 hypothetical protein K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D APU90_00355 gamma-glutamyl-phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D APU90_07315 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:rtc00340] D APU90_10085 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D APU90_10080 hisE; phosphoribosyl-ATP pyrophosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31] D APU90_10095 phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] D APU90_01920 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24] D APU90_01925 imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D APU90_10090 imidazole glycerol phosphate synthase cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D APU90_01930 imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D APU90_04910 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D APU90_00545 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D APU90_01935 aspartate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D APU90_02410 histidinol phosphatase K05602 hisN; histidinol-phosphatase [EC:3.1.3.15] D APU90_01415 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] C 00350 Tyrosine metabolism [PATH:rtc00350] D APU90_07315 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D APU90_04910 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D APU90_00545 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D APU90_01935 aspartate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D APU90_07865 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00360 Phenylalanine metabolism [PATH:rtc00360] D APU90_07315 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D APU90_04910 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D APU90_00545 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D APU90_01935 aspartate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D APU90_02685 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D APU90_10375 non-heme iron oxygenase ferredoxin subunit K05710 hcaC; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin component D APU90_04220 hypothetical protein K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] C 00380 Tryptophan metabolism [PATH:rtc00380] D APU90_00260 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D APU90_05990 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D APU90_08305 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D APU90_02685 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D APU90_06275 catalase K03781 katE; catalase [EC:1.11.1.6] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:rtc00400] D APU90_01540 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D APU90_09910 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D APU90_07970 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D APU90_08555 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D APU90_09900 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D APU90_09715 hypothetical protein K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D APU90_01350 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D APU90_01920 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24] D APU90_10110 indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D APU90_10120 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D APU90_10115 tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D APU90_06220 chorismate mutase K04092 tyrA1; chorismate mutase [EC:5.4.99.5] D APU90_05100 hypothetical protein K04093 pheA1; chorismate mutase [EC:5.4.99.5] D APU90_01760 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D APU90_07315 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D APU90_04910 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D APU90_00545 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D APU90_01935 aspartate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:rtc00410] D APU90_08485 hypothetical protein K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D APU90_09240 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D APU90_09250 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D APU90_06695 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D APU90_06575 acyl-CoA dehydrogenase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6] C 00430 Taurine and hypotaurine metabolism [PATH:rtc00430] D APU90_01635 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D APU90_07600 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D APU90_07605 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism [PATH:rtc00440] D APU90_04215 phosphoenolpyruvate phosphomutase K01841 pepM; phosphoenolpyruvate phosphomutase [EC:5.4.2.9] D APU90_00560 hypothetical protein K09459 E4.1.1.82; phosphonopyruvate decarboxylase [EC:4.1.1.82] D APU90_00565 hypothetical protein K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37] C 00450 Selenocompound metabolism [PATH:rtc00450] D APU90_07465 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D APU90_01950 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D APU90_05495 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D APU90_00960 aldehyde oxidase K12528 xdhD; putative selenate reductase molybdopterin-binding subunit D APU90_02815 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:rtc00460] D APU90_04085 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D APU90_04870 hypothetical protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D APU90_03335 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:rtc00470] D APU90_03540 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D APU90_05510 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D APU90_06260 phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D APU90_02475 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D APU90_01480 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D APU90_01970 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D APU90_00990 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D APU90_09060 hypothetical protein K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] C 00480 Glutathione metabolism [PATH:rtc00480] D APU90_00880 carboxylate--amine ligase K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-] D APU90_00255 aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D APU90_00490 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D APU90_03365 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D APU90_02760 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D APU90_05565 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D APU90_01590 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D APU90_02370 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D APU90_10335 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:rtc00511] D APU90_08590 alpha-mannosidase K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24] C 00540 Lipopolysaccharide biosynthesis [PATH:rtc00540] D APU90_02215 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D APU90_09655 hypothetical protein K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D APU90_02220 D-beta-D-heptose 1-phosphate adenosyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D APU90_02255 cytidyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D APU90_02195 haloacid dehalogenase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] C 00542 O-Antigen repeat unit biosynthesis [PATH:rtc00542] D APU90_09155 UDP-N-acetylmuramyl pentapeptide phosphotransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:rtc00541] D APU90_02940 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D APU90_08315 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D APU90_09575 hypothetical protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D APU90_09625 hypothetical protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D APU90_07660 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D APU90_08225 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D APU90_09095 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D APU90_08220 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D APU90_08215 NAD(P)-dependent oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D APU90_05940 hypothetical protein K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D APU90_08310 hypothetical protein K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D APU90_08115 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D APU90_08065 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D APU90_08285 GDP-mannose 4,6 dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D APU90_08290 GDP-mannose 4,6 dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D APU90_02770 glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] C 00550 Peptidoglycan biosynthesis [PATH:rtc00550] D APU90_09475 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D APU90_07310 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D APU90_01465 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D APU90_01480 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D APU90_01495 UDP-N-acetylmuramyl peptide synthase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D APU90_05510 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D APU90_01490 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D APU90_01220 UDP pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D APU90_10615 UDP-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D APU90_01485 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D APU90_01470 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D APU90_01500 hypothetical protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D APU90_05650 cell division protein FtsI K05364 pbpA; penicillin-binding protein A D APU90_10535 hypothetical protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D APU90_04075 hypothetical protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D APU90_00240 hypothetical protein K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13] C 00552 Teichoic acid biosynthesis [PATH:rtc00552] D APU90_10615 UDP-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D APU90_09155 UDP-N-acetylmuramyl pentapeptide phosphotransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D APU90_06725 hypothetical protein K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D APU90_08190 transcriptional regulator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:rtc00543] D APU90_09155 UDP-N-acetylmuramyl pentapeptide phosphotransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D APU90_09105 hypothetical protein K21001 pslH; polysaccharide biosynthesis protein PslH B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:rtc00730] D APU90_09360 hypothetical protein K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D APU90_00710 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D APU90_09700 hypothetical protein K03153 thiO; glycine oxidase [EC:1.4.3.19] D APU90_00175 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D APU90_09370 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D APU90_09365 thiamine-phosphate diphosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D APU90_09495 thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D APU90_08550 GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D APU90_03685 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D APU90_10180 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:rtc00740] D APU90_07920 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D APU90_07905 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D APU90_07915 riboflavin synthase subunit alpha K00793 ribE; riboflavin synthase [EC:2.5.1.9] D APU90_09325 bifunctional riboflavin kinase/FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D APU90_04245 hypothetical protein K00299 ssuE; FMN reductase [EC:1.5.1.38] D APU90_09370 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] C 00750 Vitamin B6 metabolism [PATH:rtc00750] D APU90_10235 hypothetical protein K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D APU90_03085 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D APU90_04165 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D APU90_09070 hypothetical protein K01733 thrC; threonine synthase [EC:4.2.3.1] D APU90_09775 pyridoxal biosynthesis lyase PdxS K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6] D APU90_09780 glutamine amidotransferase K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6] C 00760 Nicotinate and nicotinamide metabolism [PATH:rtc00760] D APU90_02480 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D APU90_08120 purine nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D APU90_06365 hypothetical protein K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D APU90_06065 HAD family hydrolase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D APU90_00345 nicotinate-nicotinamide nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D APU90_02550 NADH pyrophosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D APU90_05980 NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D APU90_02005 hypothetical protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D APU90_07860 nicotinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] D APU90_01805 NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D APU90_07865 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:rtc00770] D APU90_02335 acetolactate synthase 1 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D APU90_02330 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D APU90_02325 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D APU90_02340 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D APU90_00295 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D APU90_09305 hypothetical protein K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D APU90_06695 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D APU90_03555 type I pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33] D APU90_10050 phosphopantothenoylcysteine decarboxylase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D APU90_09510 phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D APU90_10265 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D APU90_03545 4'-phosphopantetheinyl transferase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D APU90_08875 hypothetical protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-] D APU90_02275 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D APU90_08485 hypothetical protein K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] C 00780 Biotin metabolism [PATH:rtc00780] D APU90_01090 3-oxoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D APU90_09600 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D APU90_09680 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D APU90_10475 beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D APU90_00085 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D APU90_08170 hypothetical protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:rtc00785] D APU90_00900 octanoyltransferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D APU90_00905 lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D APU90_04100 lipoate--protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D APU90_00260 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D APU90_05990 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D APU90_01065 alpha-ketoglutarate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D APU90_00265 dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D APU90_08600 kgd; alpha-ketoglutarate decarboxylase K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61] D APU90_04905 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D APU90_01735 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D APU90_01730 2-oxoisovalerate dehydrogenase K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D APU90_04900 pyruvate dehydrogenase K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D APU90_04895 branched-chain alpha-keto acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D APU90_08910 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D APU90_08900 glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D APU90_08905 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:rtc00790] D APU90_06655 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D APU90_06665 hypothetical protein K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D APU90_06660 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D APU90_00395 dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D APU90_09635 hypothetical protein K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85] D APU90_09720 hypothetical protein K13950 pabAB; para-aminobenzoate synthetase [EC:2.6.1.85] D APU90_00930 cyclic pyranopterin phosphate synthase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D APU90_00940 cyclic pyranopterin monophosphate synthase accessory protein K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D APU90_00950 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D APU90_00935 hypothetical protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] C 00670 One carbon pool by folate [PATH:rtc00670] D APU90_03330 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D APU90_03335 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D APU90_03380 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D APU90_03375 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D APU90_10065 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D APU90_08900 glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D APU90_02030 FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D APU90_03345 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D APU90_01955 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D APU90_07550 hypothetical protein K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D APU90_02945 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:rtc00860] D APU90_02180 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D APU90_04515 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D APU90_04460 hypothetical protein K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D APU90_04465 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D APU90_04475 hypothetical protein K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D APU90_04470 uroporphyrinogen III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D APU90_04510 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D APU90_04505 hypothetical protein K00231 PPOX; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15] D APU90_04480 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D APU90_10355 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D APU90_04655 heme oxygenase K21480 HO; heme oxygenase (biliverdin-producing, ferredoxin) [EC:1.14.15.20] D APU90_07950 hypothetical protein K23825 K23825; F420H(2)-dependent biliverdin reductase [EC:1.3.98.-] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:rtc00130] D APU90_07185 ubiquinone biosynthesis methyltransferase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D APU90_07180 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] D APU90_07175 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9] D APU90_07140 O-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113] D APU90_07155 hypothetical protein K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26] D APU90_07150 naphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36] D APU90_07160 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D APU90_05885 NAD(P)-dependent oxidoreductase K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:rtc00900] D APU90_00175 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D APU90_09260 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D APU90_03175 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12] D APU90_02800 4-diphosphocytidyl-2C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D APU90_09270 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D APU90_08815 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D APU90_04595 isopentenyl-diphosphate delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D APU90_04590 geranylgeranyl pyrophosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D APU90_01525 geranylgeranyl pyrophosphate synthase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D APU90_08775 UDP pyrophosphate synthase K12503 E2.5.1.68; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68] D APU90_01220 UDP pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation [PATH:rtc00907] D APU90_00165 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D APU90_10350 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:rtc00523] D APU90_08225 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D APU90_09095 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D APU90_08220 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D APU90_08215 NAD(P)-dependent oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D APU90_05940 hypothetical protein K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides D APU90_07180 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] C 01055 Biosynthesis of vancomycin group antibiotics D APU90_09095 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:rtc00946] D APU90_04085 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis D APU90_05895 serine hydrolase K17836 penP; beta-lactamase class A [EC:3.5.2.6] C 00332 Carbapenem biosynthesis [PATH:rtc00332] D APU90_10590 hypothetical protein K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D APU90_00355 gamma-glutamyl-phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:rtc00261] D APU90_07620 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D APU90_07625 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D APU90_02025 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D APU90_04000 hypothetical protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D APU90_02045 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:rtc00521] D APU90_01550 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D APU90_04035 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D APU90_07230 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D APU90_08225 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D APU90_09095 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D APU90_08220 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D APU90_08215 NAD(P)-dependent oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D APU90_05940 hypothetical protein K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D APU90_01550 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:rtc00525] D APU90_08225 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D APU90_09095 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:rtc00401] D APU90_01760 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D APU90_07315 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D APU90_04910 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D APU90_00545 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D APU90_01935 aspartate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis [PATH:rtc00405] D APU90_07285 chorismate-binding protein K13063 phzE; 2-amino-4-deoxychorismate synthase [EC:2.6.1.86] D APU90_09715 hypothetical protein K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D APU90_01075 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D APU90_10475 beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D APU90_00085 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics [PATH:rtc00998] D APU90_01085 acyl carrier protein K02078 acpP; acyl carrier protein D APU90_09585 hypothetical protein K02078 acpP; acyl carrier protein D APU90_09670 hypothetical protein K02078 acpP; acyl carrier protein D APU90_04215 phosphoenolpyruvate phosphomutase K01841 pepM; phosphoenolpyruvate phosphomutase [EC:5.4.2.9] D APU90_00560 hypothetical protein K09459 E4.1.1.82; phosphonopyruvate decarboxylase [EC:4.1.1.82] C 00999 Biosynthesis of various plant secondary metabolites [PATH:rtc00999] D APU90_10055 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D APU90_04085 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:rtc00362] D APU90_00165 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D APU90_04220 hypothetical protein K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D APU90_05125 hypothetical protein K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2] D APU90_08305 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] C 00627 Aminobenzoate degradation D APU90_02685 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation D APU90_04220 hypothetical protein K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation D APU90_00165 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation [PATH:rtc00643] D APU90_02685 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00791 Atrazine degradation C 00930 Caprolactam degradation D APU90_05360 gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17] C 00363 Bisphenol degradation C 00621 Dioxin degradation D APU90_04220 hypothetical protein K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] C 00626 Naphthalene degradation C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:rtc03020] D APU90_03845 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D APU90_03840 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D APU90_03630 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D APU90_10045 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:rtc03010] D APU90_10260 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D APU90_00785 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D APU90_03755 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D APU90_09855 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D APU90_03705 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D APU90_05475 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D APU90_03805 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D APU90_03720 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D APU90_03565 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D APU90_03790 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D APU90_03635 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D APU90_03810 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D APU90_03640 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D APU90_04830 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D APU90_02065 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D APU90_00875 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D APU90_03740 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D APU90_05465 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D APU90_03765 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D APU90_09740 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D APU90_07340 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D APU90_03770 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D APU90_03785 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D APU90_03780 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D APU90_03725 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D APU90_03715 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D APU90_07430 50S ribosomal protein L7 K02935 RP-L7; large subunit ribosomal protein L7/L12 D APU90_05460 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D APU90_07425 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D APU90_07335 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D APU90_03570 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D APU90_03735 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D APU90_03695 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D APU90_03750 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D APU90_03625 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D APU90_03710 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D APU90_00845 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D APU90_01895 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D APU90_00370 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D APU90_03760 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D APU90_03775 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D APU90_03730 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D APU90_02755 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D APU90_00365 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D APU90_04840 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D APU90_03745 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D APU90_03700 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D APU90_10500 hypothetical protein K02909 RP-L31; large subunit ribosomal protein L31 D APU90_01005 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D APU90_04835 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D APU90_05550 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D APU90_01900 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D APU90_01830 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D APU90_06280 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D APU90_01825 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D APU90_06285 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D APU90_06290 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D APU90_01820 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:rtc00970] D APU90_00330 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D APU90_05600 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D APU90_02925 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D APU90_03035 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D APU90_00610 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D APU90_09045 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D APU90_06815 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D APU90_01170 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D APU90_06600 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D APU90_01315 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D APU90_02775 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D APU90_02170 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D APU90_09450 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D APU90_06605 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D APU90_04605 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D APU90_01320 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D APU90_00445 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D APU90_00625 tRNA-His K14226 tRNA-His; tRNA His D APU90_05595 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D APU90_02705 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D APU90_05675 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D APU90_02445 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D APU90_10605 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D APU90_10225 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D APU90_03290 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D APU90_02405 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D APU90_02520 tRNA-Met K14230 tRNA-Met; tRNA Met D APU90_01145 tRNA-Met K14230 tRNA-Met; tRNA Met D APU90_07280 tRNA-Met K14230 tRNA-Met; tRNA Met D APU90_06595 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D APU90_01745 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D APU90_07670 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D APU90_00440 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D APU90_03970 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D APU90_07595 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D APU90_06755 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D APU90_04010 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D APU90_03145 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D APU90_07275 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D APU90_07750 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D APU90_07320 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D APU90_07225 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D APU90_01325 tRNA-Val K14237 tRNA-Val; tRNA Val D APU90_01050 tRNA-Val K14237 tRNA-Val; tRNA Val D APU90_01310 tRNA-Val K14237 tRNA-Val; tRNA Val D APU90_02180 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D APU90_00690 glutamyl-tRNA amidotransferase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D APU90_00685 glutamyl-tRNA amidotransferase K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D APU90_00695 glutamyl-tRNA amidotransferase K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D APU90_09880 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D APU90_04530 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D APU90_09765 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D APU90_04020 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D APU90_03170 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D APU90_02815 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D APU90_10065 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D APU90_00410 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D APU90_09640 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D APU90_00400 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D APU90_06700 lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D APU90_09055 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D APU90_09275 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D APU90_02735 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D APU90_01885 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D APU90_01880 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D APU90_01835 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D APU90_08010 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:rtc03060] D APU90_03690 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D APU90_07325 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D APU90_10315 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D APU90_09815 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D APU90_09820 preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D APU90_09810 hypothetical protein K03210 yajC; preprotein translocase subunit YajC D APU90_05535 preprotein translocase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D APU90_08400 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D APU90_00895 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D APU90_00910 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D APU90_00050 hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA D APU90_10660 hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA D APU90_09005 hypothetical protein K03117 tatB; sec-independent protein translocase protein TatB D APU90_00055 preprotein translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC D APU90_03650 hypothetical protein K03100 lepB; signal peptidase I [EC:3.4.21.89] D APU90_00840 S26 family signal peptidase K03100 lepB; signal peptidase I [EC:3.4.21.89] D APU90_05195 hypothetical protein K13280 SEC11; signal peptidase I [EC:3.4.21.89] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:rtc04122] D APU90_00710 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D APU90_02845 hypothetical protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D APU90_00140 thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D APU90_00705 tRNA-specific 2-thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D APU90_00950 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D APU90_00930 cyclic pyranopterin phosphate synthase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D APU90_00925 hypothetical protein K03636 moaD; sulfur-carrier protein D APU90_00920 hypothetical protein K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-] D APU90_00940 cyclic pyranopterin monophosphate synthase accessory protein K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] C 03050 Proteasome C 03018 RNA degradation [PATH:rtc03018] D APU90_00375 ribonuclease G K08300 rne; ribonuclease E [EC:3.1.26.12] D APU90_02725 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D APU90_02060 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D APU90_04950 cold-shock protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D APU90_06560 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D APU90_09080 transcription termination factor Rho K03628 rho; transcription termination factor Rho D APU90_04750 ribonuclease K12574 rnj; ribonuclease J [EC:3.1.-.-] D APU90_04560 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D APU90_03115 groEL; molecular chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D APU90_03240 polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D APU90_08870 polyphosphate kinase K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D APU90_05480 CCA tRNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:rtc03030] D APU90_10505 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D APU90_01420 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D APU90_07610 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D APU90_07735 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D APU90_09735 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D APU90_05560 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D APU90_05455 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D APU90_01200 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D APU90_00525 hypothetical protein K03111 ssb; single-strand DNA-binding protein D APU90_05470 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D APU90_07965 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D APU90_00835 hypothetical protein K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D APU90_10250 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D APU90_00700 aromatic ring-opening dioxygenase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:rtc03410] D APU90_08690 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D APU90_09300 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D APU90_01845 hypothetical protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D APU90_00995 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D APU90_09785 DNA lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D APU90_03945 DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] D APU90_00475 DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] D APU90_09210 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D APU90_01625 DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] D APU90_08015 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D APU90_06035 exonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D APU90_10250 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D APU90_00700 aromatic ring-opening dioxygenase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:rtc03420] D APU90_02745 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D APU90_10275 ABC-ATPase UvrA K03701 uvrA; excinuclease ABC subunit A D APU90_10270 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D APU90_10280 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D APU90_03430 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D APU90_02545 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D APU90_02560 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D APU90_10250 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D APU90_00700 aromatic ring-opening dioxygenase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:rtc03430] D APU90_03430 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D APU90_02545 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D APU90_02560 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D APU90_08810 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D APU90_08805 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D APU90_00525 hypothetical protein K03111 ssb; single-strand DNA-binding protein D APU90_05470 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D APU90_01420 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D APU90_05560 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D APU90_07610 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D APU90_09735 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D APU90_07735 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D APU90_10505 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D APU90_00700 aromatic ring-opening dioxygenase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:rtc03440] D APU90_00525 hypothetical protein K03111 ssb; single-strand DNA-binding protein D APU90_05470 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D APU90_05570 recombinase RecF K03629 recF; DNA replication and repair protein RecF D APU90_01225 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D APU90_07615 recombination protein RecR K06187 recR; recombination protein RecR D APU90_01990 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA D APU90_10250 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D APU90_09800 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D APU90_09805 ruvB; ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D APU90_09795 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D APU90_09505 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D APU90_01420 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D APU90_05560 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D APU90_07610 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D APU90_09735 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D APU90_07735 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D APU90_10505 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D APU90_10060 preprotein translocase subunit SecA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 [PATH:rtc03250] D APU90_05610 hypothetical protein K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:rtc02010] D APU90_00110 molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D APU90_00120 molybdenum ABC transporter permease K02018 modB; molybdate transport system permease protein D APU90_00125 molybdenum ABC transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D APU90_07530 glycine/betaine ABC transporter permease K02001 proW; glycine betaine/proline transport system permease protein D APU90_07525 glycine betaine ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D APU90_09560 glycine/betaine ABC transporter K05845 opuC; osmoprotectant transport system substrate-binding protein D APU90_09550 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D APU90_09545 ABC transporter ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D APU90_03155 sugar ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D APU90_07440 sugar ABC transporter substrate-binding protein K10232 aglE; alpha-glucoside transport system substrate-binding protein D APU90_07445 ABC transporter permease K10233 aglF; alpha-glucoside transport system permease protein D APU90_07450 sugar ABC transporter permease K10234 aglG; alpha-glucoside transport system permease protein D APU90_10155 hypothetical protein K10236 thuE; trehalose/maltose transport system substrate-binding protein D APU90_10150 sugar ABC transporter permease K10237 thuF; trehalose/maltose transport system permease protein D APU90_10145 sugar ABC transporter permease K10238 thuG; trehalose/maltose transport system permease protein D APU90_08070 hypothetical protein K07335 bmpA; basic membrane protein A and related proteins D APU90_08080 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein D APU90_08085 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein D APU90_08075 heme ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D APU90_05380 hypothetical protein K10439 rbsB; ribose transport system substrate-binding protein D APU90_03250 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D APU90_03255 phosphate ABC transporter permease K02037 pstC; phosphate transport system permease protein D APU90_03260 phosphate ABC transporter permease K02038 pstA; phosphate transport system permease protein D APU90_03265 phosphate import ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D APU90_03830 hypothetical protein K02424 tcyA; L-cystine transport system substrate-binding protein D APU90_03825 amino acid ABC transporter permease K10009 tcyB; L-cystine transport system permease protein D APU90_03820 glnQ; glutamine ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D APU90_03500 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D APU90_03480 hypothetical protein K01997 livH; branched-chain amino acid transport system permease protein D APU90_03485 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D APU90_03490 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D APU90_03495 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D APU90_08920 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D APU90_08925 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D APU90_08930 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D APU90_08935 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D APU90_10450 hypothetical protein K03523 bioY; biotin transport system substrate-specific component D APU90_00640 ABC transporter K16785 ecfT; energy-coupling factor transport system permease protein D APU90_10200 ABC transporter permease K11051 cylB; multidrug/hemolysin transport system permease protein D APU90_10195 hypothetical protein K11050 cylA; multidrug/hemolysin transport system ATP-binding protein D APU90_02425 cell division protein FtsX K09811 ftsX; cell division transport system permease protein D APU90_02430 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D APU90_06040 multidrug ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D APU90_06045 multidrug ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump C 02060 Phosphotransferase system (PTS) [PATH:rtc02060] D APU90_03670 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D APU90_03675 phosphotransferase K02784 ptsH; phosphocarrier protein HPr D APU90_03660 PTS mannitol transporter subunit IIA K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197] D APU90_03665 PTS mannitol transporter subunit IIB K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D APU90_08105 hypothetical protein K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D APU90_08110 PTS ascorbate transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D APU90_08020 PTS fructose transporter subunit IIBC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D APU90_08025 PTS fructose transporter subunit IIA K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202] D APU90_08030 hypothetical protein K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] C 03070 Bacterial secretion system [PATH:rtc03070] D APU90_09815 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D APU90_09820 preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D APU90_07325 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D APU90_10315 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D APU90_03690 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D APU90_09810 hypothetical protein K03210 yajC; preprotein translocase subunit YajC D APU90_05535 preprotein translocase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D APU90_08400 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D APU90_00910 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D APU90_00895 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D APU90_00050 hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA D APU90_10660 hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA D APU90_09005 hypothetical protein K03117 tatB; sec-independent protein translocase protein TatB D APU90_00055 preprotein translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC B B 09132 Signal transduction C 02020 Two-component system [PATH:rtc02020] D APU90_03195 histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3] D APU90_03190 XRE family transcriptional regulator K07776 regX3; two-component system, OmpR family, response regulator RegX3 D APU90_03250 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D APU90_02505 hypothetical protein K08372 pepD; putative serine protease PepD [EC:3.4.21.-] D APU90_08380 two-component system response regulator K07670 mtrA; two-component system, OmpR family, response regulator MtrA D APU90_05555 chromosomal replication initiator DnaA K02313 dnaA; chromosomal replication initiator protein D APU90_08160 hypothetical protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] D APU90_04820 vanB; D-alanine--D-alanine ligase K15739 vanB; D-alanine---(R)-lactate ligase [EC:6.1.2.1] D APU90_04815 hypothetical protein K18347 vanH; D-specific alpha-keto acid dehydrogenase [EC:1.1.1.-] D APU90_04825 peptidase M15 K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D APU90_04075 hypothetical protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D APU90_00665 hypothetical protein K18353 vanJ; vancomycin resistance protein VanJ D APU90_07955 aldolase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D APU90_08655 LuxR family transcriptional regulator K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA D APU90_10210 hypothetical protein K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D APU90_10440 hypothetical protein K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D APU90_10205 two-component system response regulator K07693 desR; two-component system, NarL family, response regulator DesR D APU90_10445 two-component system response regulator K07693 desR; two-component system, NarL family, response regulator DesR D APU90_07695 hypothetical protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D APU90_07700 hypothetical protein K12510 tadB; tight adherence protein B D APU90_00280 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D APU90_00290 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D APU90_04385 C4-dicarboxylate transporter K11103 dctA; aerobic C4-dicarboxylate transport protein D APU90_07655 hypothetical protein K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D APU90_04920 hypothetical protein K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:rtc02024] D APU90_05685 S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D APU90_09715 hypothetical protein K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D APU90_01540 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D APU90_07285 chorismate-binding protein K13063 phzE; 2-amino-4-deoxychorismate synthase [EC:2.6.1.86] D APU90_08720 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D APU90_08730 ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D APU90_08725 ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D APU90_08735 spermidine/putrescine ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D APU90_03500 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D APU90_03480 hypothetical protein K01997 livH; branched-chain amino acid transport system permease protein D APU90_03485 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D APU90_03490 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D APU90_03495 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D APU90_05425 ArsR family transcriptional regulator K20539 blcR; IclR family transcriptional regulator, blcABC operon repressor D APU90_05330 MBL fold metallo-hydrolase K13075 ahlD; N-acyl homoserine lactone hydrolase [EC:3.1.1.81] D APU90_07025 hypothetical protein K01728 pel; pectate lyase [EC:4.2.2.2] D APU90_06465 hypothetical protein K20276 bapA; large repetitive protein D APU90_00675 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D APU90_01555 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D APU90_07920 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D APU90_08920 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D APU90_08925 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D APU90_08930 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D APU90_08935 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D APU90_01195 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D APU90_06500 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D APU90_01190 peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D APU90_06505 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D APU90_01185 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D APU90_06510 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D APU90_01180 glutathione ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D APU90_06515 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D APU90_05535 preprotein translocase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D APU90_07325 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D APU90_10315 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D APU90_03690 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D APU90_09810 hypothetical protein K03210 yajC; preprotein translocase subunit YajC D APU90_08400 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D APU90_00910 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D APU90_00895 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis D APU90_05380 hypothetical protein K10439 rbsB; ribose transport system substrate-binding protein C 02040 Flagellar assembly [PATH:rtc02040] D APU90_03830 hypothetical protein K02424 tcyA; L-cystine transport system substrate-binding protein D APU90_00245 RNA polymerase subunit sigma K03086 rpoD; RNA polymerase primary sigma factor C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D APU90_02725 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:rtc01501] D APU90_08920 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D APU90_08925 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D APU90_08930 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D APU90_08935 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D APU90_05895 serine hydrolase K17836 penP; beta-lactamase class A [EC:3.5.2.6] D APU90_01500 hypothetical protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:rtc01502] D APU90_04825 peptidase M15 K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D APU90_05510 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D APU90_03540 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D APU90_04815 hypothetical protein K18347 vanH; D-specific alpha-keto acid dehydrogenase [EC:1.1.1.-] D APU90_04820 vanB; D-alanine--D-alanine ligase K15739 vanB; D-alanine---(R)-lactate ligase [EC:6.1.2.1] D APU90_01490 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D APU90_01485 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D APU90_01470 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D APU90_04075 hypothetical protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D APU90_00665 hypothetical protein K18353 vanJ; vancomycin resistance protein VanJ C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:rtc01503] D APU90_05610 hypothetical protein K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D APU90_08160 hypothetical protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:rtc01000] C 01001 Protein kinases [BR:rtc01001] D APU90_01535 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D APU90_05640 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D APU90_05645 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D APU90_04250 hypothetical protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D APU90_07650 hypothetical protein K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3] D APU90_03195 histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3] D APU90_03110 histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D APU90_07375 hypothetical protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D APU90_09030 hypothetical protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D APU90_10210 hypothetical protein K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D APU90_10440 hypothetical protein K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D APU90_04390 hypothetical protein K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3] D APU90_08410 ATPase K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:rtc01009] D APU90_05660 protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] D APU90_09460 hypothetical protein K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] D APU90_10480 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D APU90_06780 hypothetical protein K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:rtc01002] D APU90_08785 hypothetical protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D APU90_03450 guaA; GMP synthetase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D APU90_02625 hypothetical protein K07010 K07010; putative glutamine amidotransferase D APU90_03075 hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D APU90_06615 hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D APU90_06375 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D APU90_10130 glutamate synthase subunit alpha K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D APU90_03550 glutamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D APU90_05625 hypothetical protein K07284 srtA; sortase A [EC:3.4.22.70] D APU90_08915 CAAX protease K07052 K07052; CAAX protease family protein D APU90_00490 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D APU90_05890 peptidase M13 K07386 pepO; putative endopeptidase [EC:3.4.24.-] D APU90_04075 hypothetical protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D APU90_04825 peptidase M15 K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D APU90_00255 aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D APU90_08990 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D APU90_09405 hypothetical protein K13049 PM20D1; carboxypeptidase PM20D1 [EC:3.4.17.-] D APU90_00855 methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D APU90_03680 methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D APU90_02600 Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D APU90_06650 cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D APU90_08705 protease K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D APU90_02090 hypothetical protein K24131 prsW; protease PrsW [EC:3.4.-.-] D APU90_02505 hypothetical protein K08372 pepD; putative serine protease PepD [EC:3.4.21.-] D APU90_09385 protease 2 K01354 ptrB; oligopeptidase B [EC:3.4.21.83] D APU90_10535 hypothetical protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D APU90_00425 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D APU90_00430 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D APU90_02530 ATP-dependent serine peptidase containing a PDZ domain protein K07177 K07177; Lon-like protease D APU90_01945 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D APU90_03650 hypothetical protein K03100 lepB; signal peptidase I [EC:3.4.21.89] D APU90_00840 S26 family signal peptidase K03100 lepB; signal peptidase I [EC:3.4.21.89] D APU90_05195 hypothetical protein K13280 SEC11; signal peptidase I [EC:3.4.21.89] C 01003 Glycosyltransferases [BR:rtc01003] D APU90_08240 glycosyl transferase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83] D APU90_07470 hypothetical protein K16150 K16150; glycogen synthase [EC:2.4.1.11] D APU90_10490 glycosyl transferase family 1 K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342] D APU90_09105 hypothetical protein K21001 pslH; polysaccharide biosynthesis protein PslH D APU90_09155 UDP-N-acetylmuramyl pentapeptide phosphotransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D APU90_04535 hypothetical protein K14337 mptA; alpha-1,6-mannosyltransferase [EC:2.4.1.-] D APU90_08230 hypothetical protein K16870 wbbL; N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase [EC:2.4.1.289] D APU90_09140 hypothetical protein K16870 wbbL; N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase [EC:2.4.1.289] C 01005 Lipopolysaccharide biosynthesis proteins [BR:rtc01005] D APU90_02215 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D APU90_09655 hypothetical protein K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D APU90_02195 haloacid dehalogenase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D APU90_02220 D-beta-D-heptose 1-phosphate adenosyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D APU90_02255 cytidyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D APU90_09155 UDP-N-acetylmuramyl pentapeptide phosphotransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:rtc01011] D APU90_09475 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D APU90_07310 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D APU90_01465 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D APU90_01480 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D APU90_01495 UDP-N-acetylmuramyl peptide synthase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D APU90_05510 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D APU90_03540 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D APU90_02475 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D APU90_01485 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D APU90_01470 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D APU90_10615 UDP-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D APU90_05490 hypothetical protein K03980 murJ; putative peptidoglycan lipid II flippase D APU90_01500 hypothetical protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D APU90_05650 cell division protein FtsI K05364 pbpA; penicillin-binding protein A D APU90_10535 hypothetical protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D APU90_04825 peptidase M15 K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D APU90_04075 hypothetical protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D APU90_03075 hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D APU90_06615 hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D APU90_05625 hypothetical protein K07284 srtA; sortase A [EC:3.4.22.70] D APU90_09890 hypothetical protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] C 01004 Lipid biosynthesis proteins [BR:rtc01004] D APU90_01075 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D APU90_01080 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D APU90_01090 3-oxoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D APU90_09600 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D APU90_09680 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D APU90_10475 beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D APU90_00085 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D APU90_07690 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D APU90_05305 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D APU90_00675 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D APU90_01555 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D APU90_01545 hypothetical protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D APU90_09245 acyl-phosphate glycerol 3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D APU90_09480 acyl-phosphate glycerol 3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:rtc01006] D APU90_01525 geranylgeranyl pyrophosphate synthase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D APU90_04590 geranylgeranyl pyrophosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D APU90_08775 UDP pyrophosphate synthase K12503 E2.5.1.68; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68] D APU90_01220 UDP pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D APU90_01975 tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D APU90_07160 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D APU90_10355 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D APU90_05840 hypothetical protein K14136 K14136; decaprenyl-phosphate phosphoribosyltransferase [EC:2.4.2.45] C 01007 Amino acid related enzymes [BR:rtc01007] D APU90_02180 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D APU90_01835 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D APU90_08010 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D APU90_03170 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D APU90_09055 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D APU90_02815 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D APU90_00400 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D APU90_00410 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D APU90_09640 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D APU90_06700 lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D APU90_02735 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D APU90_04530 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D APU90_04020 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D APU90_09275 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D APU90_09765 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D APU90_09880 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D APU90_01885 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D APU90_01880 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D APU90_07315 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D APU90_04910 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D APU90_00545 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D APU90_01935 aspartate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D APU90_01860 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D APU90_09240 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D APU90_09250 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D APU90_04460 hypothetical protein K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D APU90_02275 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D APU90_00565 hypothetical protein K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37] D APU90_03085 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:rtc00194] D APU90_09200 ATP synthase F0F1 subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D APU90_09195 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D APU90_09190 ATP synthase F0F1 subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D APU90_09185 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D APU90_09180 ATP synthase F0F1 subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D APU90_09175 ATP synthase F0F1 subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D APU90_09170 ATP F0F1 synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D APU90_09165 ATP synthase F0F1 subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:rtc03000] D APU90_05745 modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D APU90_05635 hypothetical protein K21746 rclR; AraC family transcriptional regulator, reactive chlorine species (RCS)-specific activator of rcl operon D APU90_03315 DeoR family transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor D APU90_08035 D-beta-D-heptose 1-phosphate adenosyltransferase K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D APU90_01665 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D APU90_04545 transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR D APU90_04875 peptide ABC transporter substrate-binding protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D APU90_06270 Fur family transcriptional regulator K22297 furA; Fur family transcriptional regulator, stress-responsive regulator D APU90_05425 ArsR family transcriptional regulator K20539 blcR; IclR family transcriptional regulator, blcABC operon repressor D APU90_07010 hypothetical protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D APU90_07925 ArsR family transcriptional regulator K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor D APU90_07980 XRE family transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator D APU90_02000 XRE family transcriptional regulator K27043 clgR; XRE family transcriptional regulator, stress-response regulator D APU90_03080 dihydrofolate reductase K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor D APU90_08170 hypothetical protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D APU90_06855 hypothetical protein K07727 K07727; putative transcriptional regulator D APU90_05405 hypothetical protein K07729 K07729; putative transcriptional regulator D APU90_04420 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D APU90_04850 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D APU90_08320 transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D APU90_08415 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D APU90_09345 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D APU90_05515 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D APU90_03180 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D APU90_10175 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D APU90_01285 HrcA family transcriptional regulator K03705 hrcA; heat-inducible transcriptional repressor D APU90_07990 transcriptional regulator K05346 deoR; deoxyribonucleoside regulator D APU90_10005 hypothetical protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D APU90_07045 transcriptional regulator K07734 paiB; transcriptional regulator D APU90_01410 NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR D APU90_01515 division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:rtc03021] D APU90_03630 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D APU90_03845 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D APU90_03840 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D APU90_10045 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D APU90_00245 RNA polymerase subunit sigma K03086 rpoD; RNA polymerase primary sigma factor D APU90_04045 RNA polymerase subunit sigma-70 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D APU90_08560 hypothetical protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D APU90_03275 RNA polymerase subunit sigma K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D APU90_02185 hypothetical protein K03090 sigB; RNA polymerase sigma-B factor D APU90_09280 transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA D APU90_10000 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB D APU90_07330 antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D APU90_08750 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D APU90_09080 transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:rtc03019] D APU90_00375 ribonuclease G K08300 rne; ribonuclease E [EC:3.1.26.12] D APU90_04750 ribonuclease K12574 rnj; ribonuclease J [EC:3.1.-.-] D APU90_00620 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D APU90_04950 cold-shock protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D APU90_06560 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D APU90_02725 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D APU90_02060 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D APU90_09080 transcription termination factor Rho K03628 rho; transcription termination factor Rho D APU90_04560 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D APU90_03115 groEL; molecular chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D APU90_03240 polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D APU90_08870 polyphosphate kinase K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D APU90_05480 CCA tRNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D APU90_10285 glmZ(sRNA)-inactivating NTPase K06958 rapZ; RNase adapter protein RapZ D APU90_00060 RNA helicase K03727 helY; ATP-dependent RNA helicase HelY [EC:5.6.2.6] D APU90_02855 ATP-dependent RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:rtc03011] D APU90_10260 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D APU90_00785 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D APU90_03755 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D APU90_09855 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D APU90_03705 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D APU90_05475 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D APU90_03805 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D APU90_03720 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D APU90_03565 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D APU90_03790 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D APU90_03635 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D APU90_03810 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D APU90_03640 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D APU90_04830 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D APU90_02065 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D APU90_00875 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D APU90_03740 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D APU90_05465 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D APU90_03765 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D APU90_09740 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D APU90_07340 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D APU90_03770 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D APU90_03785 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D APU90_03780 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D APU90_03725 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D APU90_03715 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D APU90_05460 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D APU90_07425 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D APU90_07335 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D APU90_07430 50S ribosomal protein L7 K02935 RP-L7; large subunit ribosomal protein L7/L12 D APU90_03570 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D APU90_03735 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D APU90_03695 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D APU90_03750 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D APU90_03625 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D APU90_03710 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D APU90_00845 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D APU90_01895 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D APU90_00370 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D APU90_03760 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D APU90_03775 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D APU90_03730 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D APU90_00365 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D APU90_04840 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D APU90_03745 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D APU90_03700 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D APU90_10500 hypothetical protein K02909 RP-L31; large subunit ribosomal protein L31 D APU90_01005 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D APU90_04835 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D APU90_05550 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D APU90_01900 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D APU90_02755 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D APU90_06290 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D APU90_01820 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D APU90_01830 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D APU90_06280 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D APU90_01825 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D APU90_06285 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:rtc03009] D APU90_00620 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D APU90_01250 GTPase Era K03595 era; GTPase D APU90_00360 obgE; GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] D APU90_09280 transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA D APU90_10000 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB D APU90_07330 antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D APU90_10070 methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D APU90_01965 hypothetical protein K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D APU90_09500 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D APU90_01275 16S rRNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D APU90_05525 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D APU90_01510 ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D APU90_02820 16S rRNA methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D APU90_01810 hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D APU90_03165 RNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D APU90_01765 MFS transporter K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D APU90_01425 RNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D APU90_03525 hypothetical protein K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D APU90_04320 cytoplasmic protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor D APU90_00375 ribonuclease G K08300 rne; ribonuclease E [EC:3.1.26.12] D APU90_04950 cold-shock protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D APU90_08550 GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D APU90_01750 ribosome-associated GTPase EngA K03977 engA; GTPase D APU90_01960 GTP-binding protein K03665 hflX; GTPase D APU90_09830 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D APU90_09295 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D APU90_00335 ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein D APU90_01260 rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor D APU90_08840 GTP-binding protein K06942 ychF; ribosome-binding ATPase D APU90_01010 hypothetical protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:rtc03016] D APU90_02830 transferase K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] D APU90_02180 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D APU90_09275 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D APU90_00400 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D APU90_09640 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D APU90_02815 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D APU90_09055 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D APU90_06700 lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D APU90_09880 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D APU90_04530 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D APU90_09765 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D APU90_04020 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D APU90_03170 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D APU90_00410 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D APU90_02735 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D APU90_01885 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D APU90_01880 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D APU90_01835 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D APU90_08010 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D APU90_01270 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D APU90_00025 SAM-dependent methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220] D APU90_10635 SAM-dependent methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220] D APU90_09310 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D APU90_00710 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D APU90_01975 tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D APU90_05545 hypothetical protein K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D APU90_10675 bacterial RNase P K01978 rnpB; M1 RNA D APU90_02470 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D APU90_00160 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D APU90_07000 hypothetical protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D APU90_01980 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D APU90_00860 tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D APU90_01890 RNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family D APU90_00705 tRNA-specific 2-thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D APU90_03210 aminomethyltransferase K06980 ygfZ; tRNA-modifying protein YgfZ D APU90_06625 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D APU90_03530 tRNA threonylcarbamoyladenosine biosynthesis protein TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D APU90_03520 tRNA threonylcarbamoyl adenosine modification protein TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D APU90_03535 tRNA threonylcarbamoyladenosine biosynthesis protein TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D APU90_02060 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:rtc03012] D APU90_09290 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D APU90_01905 hypothetical protein K02520 infC; translation initiation factor IF-3 D APU90_00780 elongation factor Ts K02357 tsf; elongation factor Ts D APU90_03795 elongation factor Tu K02358 tuf; elongation factor Tu D APU90_03800 fusA; elongation factor G K02355 fusA; elongation factor G D APU90_09085 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D APU90_00770 ribosome-recycling factor K02838 frr; ribosome recycling factor D APU90_09090 protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D APU90_09705 hypothetical protein K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D APU90_05110 hypothetical protein K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D APU90_02750 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D APU90_03645 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D APU90_09995 elongation factor P K02356 efp; elongation factor P D APU90_02435 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 C 03110 Chaperones and folding catalysts [BR:rtc03110] D APU90_06735 NDP-hexose 4-ketoreductase K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D APU90_00420 ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D APU90_04560 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D APU90_03115 groEL; molecular chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D APU90_01280 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D APU90_04550 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D APU90_04555 molecular chaperone GrpE K03687 GRPE; molecular chaperone GrpE D APU90_03360 heat-shock protein Hsp20 K13993 HSP20; HSP20 family protein D APU90_03510 molecular chaperone GroES K04078 groES; chaperonin GroES D APU90_06650 cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D APU90_09165 ATP synthase F0F1 subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D APU90_04340 hypothetical protein K09796 pccA; periplasmic copper chaperone A D APU90_05610 hypothetical protein K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D APU90_09845 peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D APU90_05500 thioredoxin K03671 TXN; thioredoxin D APU90_00725 co-chaperone YbbN K05838 ybbN; putative thioredoxin C 04131 Membrane trafficking [BR:rtc04131] D APU90_00385 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D APU90_08590 alpha-mannosidase K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24] D APU90_10300 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D APU90_03205 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D APU90_10140 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] C 04121 Ubiquitin system [BR:rtc04121] C 03051 Proteasome [BR:rtc03051] D APU90_00035 transcriptional regulator K13572 pafB; proteasome accessory factor B D APU90_10645 transcriptional regulator K13572 pafB; proteasome accessory factor B D APU90_00040 hypothetical protein K13573 pafC; proteasome accessory factor C D APU90_10650 hypothetical protein K13573 pafC; proteasome accessory factor C C 03032 DNA replication proteins [BR:rtc03032] D APU90_07965 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D APU90_05745 modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D APU90_04660 helicase K15255 PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3] D APU90_04680 hypothetical protein K03530 hupB; DNA-binding protein HU-beta D APU90_05555 chromosomal replication initiator DnaA K02313 dnaA; chromosomal replication initiator protein D APU90_05455 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D APU90_01200 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D APU90_00525 hypothetical protein K03111 ssb; single-strand DNA-binding protein D APU90_05470 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D APU90_01420 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D APU90_05560 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D APU90_09735 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D APU90_07735 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D APU90_10505 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D APU90_07610 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D APU90_00835 hypothetical protein K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D APU90_10250 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D APU90_00700 aromatic ring-opening dioxygenase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D APU90_00220 DNA topoisomerase IV K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D APU90_05585 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D APU90_00225 DNA topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D APU90_05580 DNA topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D APU90_07725 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:rtc03036] D APU90_05745 modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D APU90_05715 hypothetical protein K26249 lsr2; nucleoid-associated protein Lsr2 D APU90_04680 hypothetical protein K03530 hupB; DNA-binding protein HU-beta D APU90_05555 chromosomal replication initiator DnaA K02313 dnaA; chromosomal replication initiator protein D APU90_00450 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein D APU90_07145 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein D APU90_00915 chromosome segregation protein SMC K03529 smc; chromosome segregation protein D APU90_01775 chromosome segregation protein ScpA K05896 scpA; segregation and condensation protein A D APU90_01770 segregation and condensation protein B K06024 scpB; segregation and condensation protein B D APU90_02430 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D APU90_01500 hypothetical protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D APU90_02165 hypothetical protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D APU90_02015 cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D APU90_07790 hypothetical protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D APU90_08490 cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D APU90_01460 hypothetical protein K03589 ftsQ; cell division protein FtsQ D APU90_01475 cell division protein FtsW K03588 ftsW; cell division protein FtsW D APU90_02425 cell division protein FtsX K09811 ftsX; cell division transport system permease protein D APU90_01455 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D APU90_00135 ATPase K06916 zapE; cell division protein ZapE D APU90_01445 cell division protein SepF K09772 sepF; cell division inhibitor SepF D APU90_01780 chromosome partitioning protein K03496 parA; chromosome partitioning protein D APU90_05520 chromosome partitioning protein K03496 parA; chromosome partitioning protein D APU90_01570 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein D APU90_05515 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D APU90_05525 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D APU90_00800 recombinase XerC K03733 xerC; integrase/recombinase XerC D APU90_01785 recombinase XerC K04763 xerD; integrase/recombinase XerD D APU90_09010 sodium:proton antiporter K03593 mrp; ATP-binding protein involved in chromosome partitioning D APU90_03965 cell filamentation protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D APU90_10290 sporulation protein K09762 whiA; cell division protein WhiA C 03400 DNA repair and recombination proteins [BR:rtc03400] D APU90_09215 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D APU90_06980 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D APU90_08690 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D APU90_01845 hypothetical protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D APU90_09300 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D APU90_01600 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D APU90_00195 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D APU90_04720 deoxyribodipyrimidine photolyase K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] D APU90_01625 DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] D APU90_09210 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D APU90_00995 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D APU90_09785 DNA lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D APU90_03945 DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] D APU90_00475 DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] D APU90_08015 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D APU90_06035 exonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D APU90_00700 aromatic ring-opening dioxygenase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D APU90_10250 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D APU90_10275 ABC-ATPase UvrA K03701 uvrA; excinuclease ABC subunit A D APU90_10270 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D APU90_10280 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D APU90_03430 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D APU90_02545 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D APU90_02560 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D APU90_03845 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D APU90_03840 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D APU90_03630 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D APU90_10045 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D APU90_02745 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D APU90_08810 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D APU90_08805 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D APU90_01420 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D APU90_05560 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D APU90_09735 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D APU90_07735 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D APU90_10505 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D APU90_07610 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D APU90_00525 hypothetical protein K03111 ssb; single-strand DNA-binding protein D APU90_05470 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D APU90_01990 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA D APU90_09800 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D APU90_09805 ruvB; ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D APU90_09795 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D APU90_10060 preprotein translocase subunit SecA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D APU90_06750 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D APU90_05570 recombinase RecF K03629 recF; DNA replication and repair protein RecF D APU90_09505 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D APU90_01225 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D APU90_07615 recombination protein RecR K06187 recR; recombination protein RecR D APU90_01800 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D APU90_06100 type I-E CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D APU90_00220 DNA topoisomerase IV K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D APU90_05585 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D APU90_00225 DNA topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D APU90_05580 DNA topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D APU90_07725 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D APU90_04680 hypothetical protein K03530 hupB; DNA-binding protein HU-beta D APU90_06560 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D APU90_01945 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D APU90_10580 hypothetical protein K14161 imuB; protein ImuB D APU90_10575 DNA polymerase III subunit alpha K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D APU90_01985 hypothetical protein K03565 recX; regulatory protein D APU90_03940 DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D APU90_03245 DNA mismatch repair protein MutT K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] D APU90_01790 ADP-ribose pyrophosphatase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D APU90_07490 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D APU90_07495 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:rtc03029] D APU90_09290 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D APU90_01905 hypothetical protein K02520 infC; translation initiation factor IF-3 D APU90_00780 elongation factor Ts K02357 tsf; elongation factor Ts D APU90_03795 elongation factor Tu K02358 tuf; elongation factor Tu D APU90_03800 fusA; elongation factor G K02355 fusA; elongation factor G D APU90_01250 GTPase Era K03595 era; GTPase D APU90_01835 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D APU90_09640 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D APU90_04530 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D APU90_09055 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D APU90_00690 glutamyl-tRNA amidotransferase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D APU90_00685 glutamyl-tRNA amidotransferase K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D APU90_00695 glutamyl-tRNA amidotransferase K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D APU90_04660 helicase K15255 PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3] D APU90_00525 hypothetical protein K03111 ssb; single-strand DNA-binding protein D APU90_05470 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D APU90_04560 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D APU90_04555 molecular chaperone GrpE K03687 GRPE; molecular chaperone GrpE D APU90_03115 groEL; molecular chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D APU90_03510 molecular chaperone GroES K04078 groES; chaperonin GroES D APU90_01280 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D APU90_04550 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D APU90_00710 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D APU90_09010 sodium:proton antiporter K03593 mrp; ATP-binding protein involved in chromosome partitioning D APU90_10355 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D APU90_05535 preprotein translocase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:rtc02000] D APU90_06040 multidrug ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D APU90_06045 multidrug ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D APU90_02785 ABC transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein D APU90_00110 molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D APU90_00120 molybdenum ABC transporter permease K02018 modB; molybdate transport system permease protein D APU90_00125 molybdenum ABC transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D APU90_08720 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D APU90_08730 ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D APU90_08725 ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D APU90_08735 spermidine/putrescine ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D APU90_07530 glycine/betaine ABC transporter permease K02001 proW; glycine betaine/proline transport system permease protein D APU90_07525 glycine betaine ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D APU90_09560 glycine/betaine ABC transporter K05845 opuC; osmoprotectant transport system substrate-binding protein D APU90_09550 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D APU90_09545 ABC transporter ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D APU90_04410 sulfonate ABC transporter permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein D APU90_04415 nitrate ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D APU90_03155 sugar ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D APU90_07440 sugar ABC transporter substrate-binding protein K10232 aglE; alpha-glucoside transport system substrate-binding protein D APU90_07445 ABC transporter permease K10233 aglF; alpha-glucoside transport system permease protein D APU90_07450 sugar ABC transporter permease K10234 aglG; alpha-glucoside transport system permease protein D APU90_10155 hypothetical protein K10236 thuE; trehalose/maltose transport system substrate-binding protein D APU90_10150 sugar ABC transporter permease K10237 thuF; trehalose/maltose transport system permease protein D APU90_10145 sugar ABC transporter permease K10238 thuG; trehalose/maltose transport system permease protein D APU90_05380 hypothetical protein K10439 rbsB; ribose transport system substrate-binding protein D APU90_08070 hypothetical protein K07335 bmpA; basic membrane protein A and related proteins D APU90_08080 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein D APU90_08085 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein D APU90_08075 heme ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D APU90_08575 sugar ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D APU90_08580 amino acid ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D APU90_08585 sugar ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D APU90_03250 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D APU90_03255 phosphate ABC transporter permease K02037 pstC; phosphate transport system permease protein D APU90_03260 phosphate ABC transporter permease K02038 pstA; phosphate transport system permease protein D APU90_03265 phosphate import ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D APU90_03830 hypothetical protein K02424 tcyA; L-cystine transport system substrate-binding protein D APU90_03825 amino acid ABC transporter permease K10009 tcyB; L-cystine transport system permease protein D APU90_03820 glnQ; glutamine ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D APU90_03500 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D APU90_03480 hypothetical protein K01997 livH; branched-chain amino acid transport system permease protein D APU90_03485 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D APU90_03490 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D APU90_03495 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D APU90_08920 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D APU90_08925 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D APU90_08930 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D APU90_08935 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D APU90_01195 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D APU90_06500 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D APU90_01190 peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D APU90_06505 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D APU90_01185 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D APU90_06510 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D APU90_01180 glutathione ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D APU90_06515 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D APU90_05215 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D APU90_05210 iron ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein D APU90_05205 histidinol phosphatase K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D APU90_10495 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D APU90_10450 hypothetical protein K03523 bioY; biotin transport system substrate-specific component D APU90_00640 ABC transporter K16785 ecfT; energy-coupling factor transport system permease protein D APU90_00645 ABC transporter ATP-binding protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D APU90_00650 hypothetical protein K16925 ykoE; energy-coupling factor transport system permease protein D APU90_04890 hypothetical protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein D APU90_04880 ABC transporter permease K02075 ABC.ZM.P; zinc/manganese transport system permease protein D APU90_04885 ABC transporter ATP-binding protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein D APU90_10200 ABC transporter permease K11051 cylB; multidrug/hemolysin transport system permease protein D APU90_10195 hypothetical protein K11050 cylA; multidrug/hemolysin transport system ATP-binding protein D APU90_02425 cell division protein FtsX K09811 ftsX; cell division transport system permease protein D APU90_02430 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D APU90_01035 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D APU90_03950 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D APU90_05810 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D APU90_10215 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D APU90_10435 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D APU90_08265 sugar ABC transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D APU90_09620 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D APU90_09865 sodium ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D APU90_04665 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D APU90_01040 hypothetical protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D APU90_04755 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D APU90_03955 ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D APU90_04670 multidrug ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D APU90_05815 hypothetical protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D APU90_07570 hypothetical protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D APU90_05390 hypothetical protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D APU90_10220 hypothetical protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D APU90_10430 hypothetical protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D APU90_08260 hypothetical protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D APU90_09615 hypothetical protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D APU90_09860 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D APU90_04960 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein D APU90_04975 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D APU90_06145 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein D APU90_07030 hypothetical protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D APU90_04965 peptide ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D APU90_04980 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D APU90_06140 peptide ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D APU90_10380 sufC; Fe-S cluster assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein D APU90_00090 MATE family efflux transporter K26939 norM; MATE family, multidrug efflux pump D APU90_05755 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump D APU90_00790 MFS transporter K08139 HXT; MFS transporter, SP family, sugar:H+ symporter D APU90_05155 MFS transporter K06609 iolT; MFS transporter, SP family, major inositol transporter D APU90_09760 hypothetical protein K03449 MFS.CP; MFS transporter, CP family, cyanate transporter D APU90_03995 hypothetical protein K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter D APU90_05935 hypothetical protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D APU90_00580 hypothetical protein K08166 mmr; MFS transporter, DHA2 family, methylenomycin A resistance protein D APU90_08890 MFS transporter K18926 lmrB; MFS transporter, DHA2 family, lincomycin resistance protein D APU90_03670 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D APU90_03675 phosphotransferase K02784 ptsH; phosphocarrier protein HPr D APU90_08025 PTS fructose transporter subunit IIA K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202] D APU90_08020 PTS fructose transporter subunit IIBC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D APU90_03660 PTS mannitol transporter subunit IIA K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197] D APU90_03665 PTS mannitol transporter subunit IIB K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D APU90_08105 hypothetical protein K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D APU90_08110 PTS ascorbate transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D APU90_01340 hypothetical protein K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121] D APU90_08000 glycerol transporter K02440 glpF; glycerol uptake facilitator D APU90_00130 ammonia channel protein K03320 amt; ammonium transporter, Amt family D APU90_05070 hypothetical protein K06199 crcB; fluoride exporter D APU90_05075 hypothetical protein K06199 crcB; fluoride exporter D APU90_08610 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D APU90_08605 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D APU90_08500 hypothetical protein K21449 ata; trimeric autotransporter adhesin D APU90_01305 L-asparagine permease K11738 ansP; L-asparagine permease D APU90_05220 cation transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein D APU90_05355 hypothetical protein K03299 TC.GNTP; gluconate:H+ symporter, GntP family D APU90_04385 C4-dicarboxylate transporter K11103 dctA; aerobic C4-dicarboxylate transport protein D APU90_02740 sodium:proton antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family D APU90_00750 hypothetical protein K24163 nhaK; monovalent cation/hydrogen antiporter D APU90_03465 hypothetical protein K07228 khtT; K+:H+ antiporter subunit KhtT D APU90_07455 manganese transporter K03322 mntH; manganese transport protein D APU90_02355 arsenic transporter K03893 arsB; arsenical pump membrane protein D APU90_07260 hypothetical protein K05567 mnhC; multicomponent Na+:H+ antiporter subunit C D APU90_07255 cation:proton antiporter K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D APU90_07250 hypothetical protein K05569 mnhE; multicomponent Na+:H+ antiporter subunit E D APU90_07245 hypothetical protein K05570 mnhF; multicomponent Na+:H+ antiporter subunit F D APU90_07240 hypothetical protein K05571 mnhG; multicomponent Na+:H+ antiporter subunit G D APU90_06445 hypothetical protein K16695 wzxC; lipopolysaccharide exporter D APU90_05490 hypothetical protein K03980 murJ; putative peptidoglycan lipid II flippase D APU90_08740 permease K20469 K20469; putative heme transporter D APU90_04025 rubrerythrin family protein K22736 VIT; vacuolar iron transporter family protein D APU90_01475 cell division protein FtsW K03588 ftsW; cell division protein FtsW D APU90_06765 hypothetical protein K23242 mntP; manganese efflux pump family protein D APU90_08960 hypothetical protein K07243 FTR; high-affinity iron transporter D APU90_08955 hypothetical protein K07224 efeO; iron uptake system component EfeO D APU90_08950 peroxidase K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-] D APU90_07270 hypothetical protein K03641 tolB; TolB protein D APU90_07125 cytochrome C biogenesis protein K06196 ccdA; cytochrome c-type biogenesis protein D APU90_07650 hypothetical protein K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3] D APU90_06830 hypothetical protein K03811 pnuC; nicotinamide mononucleotide transporter D APU90_09220 hypothetical protein K05770 TSPO; translocator protein D APU90_04335 hypothetical protein K07156 copC; copper resistance protein C C 02044 Secretion system [BR:rtc02044] D APU90_08785 hypothetical protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D APU90_07695 hypothetical protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D APU90_07700 hypothetical protein K12510 tadB; tight adherence protein B D APU90_01440 hypothetical protein K02221 yggT; YggT family protein D APU90_09725 hypothetical protein K02237 comEA; competence protein ComEA D APU90_09730 hypothetical protein K02238 comEC; competence protein ComEC D APU90_08400 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D APU90_09815 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D APU90_07325 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D APU90_09820 preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D APU90_10315 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D APU90_03690 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D APU90_00895 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D APU90_00910 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D APU90_09810 hypothetical protein K03210 yajC; preprotein translocase subunit YajC D APU90_05535 preprotein translocase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D APU90_00050 hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA D APU90_10660 hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA D APU90_09005 hypothetical protein K03117 tatB; sec-independent protein translocase protein TatB D APU90_00055 preprotein translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:rtc02042] D APU90_08610 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D APU90_08605 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D APU90_08770 hemolysin III K11068 hlyIII; hemolysin III C 02022 Two-component system [BR:rtc02022] D APU90_03195 histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3] D APU90_03190 XRE family transcriptional regulator K07776 regX3; two-component system, OmpR family, response regulator RegX3 D APU90_08380 two-component system response regulator K07670 mtrA; two-component system, OmpR family, response regulator MtrA D APU90_03110 histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D APU90_07375 hypothetical protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D APU90_09030 hypothetical protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D APU90_03105 two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator D APU90_07370 two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator D APU90_08655 LuxR family transcriptional regulator K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA D APU90_10210 hypothetical protein K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D APU90_10440 hypothetical protein K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D APU90_10205 two-component system response regulator K07693 desR; two-component system, NarL family, response regulator DesR D APU90_10445 two-component system response regulator K07693 desR; two-component system, NarL family, response regulator DesR D APU90_04390 hypothetical protein K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3] D APU90_08410 ATPase K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3] D APU90_10230 transcriptional regulator K22010 pdtaR; two-component system, response regulator PdtaR C 02035 Bacterial motility proteins [BR:rtc02035] D APU90_03830 hypothetical protein K02424 tcyA; L-cystine transport system substrate-binding protein D APU90_08785 hypothetical protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D APU90_07695 hypothetical protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:rtc04812] D APU90_01455 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D APU90_01780 chromosome partitioning protein K03496 parA; chromosome partitioning protein D APU90_05520 chromosome partitioning protein K03496 parA; chromosome partitioning protein D APU90_01570 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein D APU90_05515 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:rtc04147] D APU90_02725 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D APU90_10300 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D APU90_10305 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D APU90_10140 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D APU90_05610 hypothetical protein K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D APU90_03115 groEL; molecular chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D APU90_04560 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D APU90_05360 gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17] D APU90_03470 guanosine monophosphate reductase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D APU90_03475 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D APU90_03795 elongation factor Tu K02358 tuf; elongation factor Tu D APU90_01270 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D APU90_00675 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D APU90_01555 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D APU90_03685 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D APU90_10180 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D APU90_02730 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D APU90_06795 hypothetical protein K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D APU90_01850 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D APU90_01660 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D APU90_03325 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D APU90_00720 glycogen-branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D APU90_08005 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D APU90_00280 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D APU90_00290 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D APU90_04465 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D APU90_02310 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D APU90_03375 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D APU90_00260 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D APU90_05990 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D APU90_01590 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D APU90_02370 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D APU90_10335 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D APU90_10310 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D APU90_03205 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 02048 Prokaryotic defense system [BR:rtc02048] D APU90_06100 type I-E CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D APU90_06095 type I-E CRISPR-associated endoribonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2 D APU90_06130 hypothetical protein K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D APU90_06125 hypothetical protein K19123 casA; CRISPR system Cascade subunit CasA D APU90_06120 hypothetical protein K19046 casB; CRISPR system Cascade subunit CasB D APU90_06115 type I-E CRISPR-associated protein Cas7/Cse4/CasC K19124 casC; CRISPR system Cascade subunit CasC D APU90_06105 hypothetical protein K19126 casE; CRISPR system Cascade subunit CasE D APU90_02895 hypothetical protein K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D APU90_04090 DNA methyltransferase K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72] D APU90_05745 modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D APU90_07830 plasmid stabilization protein K06218 relE; mRNA interferase RelE/StbE D APU90_02605 hypothetical protein K07341 doc; death on curing protein D APU90_07835 prevent-host-death family protein K19165 phd; antitoxin Phd D APU90_01455 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D APU90_02180 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D APU90_00710 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:rtc01504] D APU90_02555 macrolide 2'-phosphotransferase K06979 mph; macrolide phosphotransferase D APU90_05895 serine hydrolase K17836 penP; beta-lactamase class A [EC:3.5.2.6] D APU90_04075 hypothetical protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D APU90_00665 hypothetical protein K18353 vanJ; vancomycin resistance protein VanJ D APU90_04815 hypothetical protein K18347 vanH; D-specific alpha-keto acid dehydrogenase [EC:1.1.1.-] D APU90_04820 vanB; D-alanine--D-alanine ligase K15739 vanB; D-alanine---(R)-lactate ligase [EC:6.1.2.1] D APU90_04825 peptidase M15 K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D APU90_08160 hypothetical protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:rtc03100] D APU90_00330 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D APU90_05600 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D APU90_02925 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D APU90_03035 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D APU90_00610 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D APU90_09045 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D APU90_06815 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D APU90_01170 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D APU90_06600 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D APU90_01315 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D APU90_02775 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D APU90_02170 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D APU90_09450 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D APU90_06605 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D APU90_04605 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D APU90_01320 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D APU90_00445 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D APU90_00625 tRNA-His K14226 tRNA-His; tRNA His D APU90_05595 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D APU90_02705 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D APU90_05675 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D APU90_02445 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D APU90_10605 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D APU90_10225 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D APU90_03290 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D APU90_02405 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D APU90_02520 tRNA-Met K14230 tRNA-Met; tRNA Met D APU90_01145 tRNA-Met K14230 tRNA-Met; tRNA Met D APU90_07280 tRNA-Met K14230 tRNA-Met; tRNA Met D APU90_06595 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D APU90_01745 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D APU90_07670 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D APU90_00440 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D APU90_03970 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D APU90_07595 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D APU90_06755 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D APU90_04010 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D APU90_03145 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D APU90_07275 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D APU90_07750 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D APU90_07320 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D APU90_07225 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D APU90_01325 tRNA-Val K14237 tRNA-Val; tRNA Val D APU90_01050 tRNA-Val K14237 tRNA-Val; tRNA Val D APU90_01310 tRNA-Val K14237 tRNA-Val; tRNA Val D APU90_01830 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D APU90_06280 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D APU90_01825 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D APU90_06285 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D APU90_06290 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D APU90_01820 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D APU90_10675 bacterial RNase P K01978 rnpB; M1 RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D APU90_05430 gluconate 5-dehydrogenase K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69] D APU90_05435 L-idonate 5-dehydrogenase K00098 idnD; L-idonate 5-dehydrogenase [EC:1.1.1.264] D APU90_02870 oxidoreductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346] D APU90_07390 oxidoreductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346] D APU90_06925 nucleoside-diphosphate sugar epimerase K22320 oleD; 2-alkyl-3-oxoalkanoate reductase [EC:1.1.1.412] D APU90_03000 hypothetical protein K15510 fgd1; coenzyme F420-dependent glucose-6-phosphate dehydrogenase [EC:1.1.98.2] D APU90_05165 NADP oxidoreductase K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40] D APU90_08125 flavoprotein disulfide reductase K23842 lpdA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D APU90_06195 NADPH:quinone reductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D APU90_00530 peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D APU90_03135 peptide methionine sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D APU90_06200 manganese catalase K07217 ydbD; manganese catalase [EC:1.11.1.6] D APU90_07510 bromoperoxidase K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10] D APU90_08545 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D APU90_05170 peroxiredoxin K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D APU90_06215 organic hydroperoxide resistance protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D APU90_01060 peroxiredoxin K24120 ahpE; mycoredoxin-dependent peroxiredoxin [EC:1.11.1.29] D APU90_07195 pyridine nucleotide-disulfide oxidoreductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D APU90_05965 hypothetical protein K00612 nodU; carbamoyltransferase [EC:2.1.3.-] D APU90_03235 hypothetical protein K15520 mshD; mycothiol synthase [EC:2.3.1.189] D APU90_00005 hypothetical protein K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D APU90_00065 hypothetical protein K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D APU90_06915 3-oxoacyl-ACP synthase K22317 oleA; acyl-CoA:acyl-CoA alkyltransferase [EC:2.3.3.20] D APU90_06955 hypothetical protein K15521 mshA; D-inositol-3-phosphate glycosyltransferase [EC:2.4.1.250] D APU90_02210 glycosyl transferase K15521 mshA; D-inositol-3-phosphate glycosyltransferase [EC:2.4.1.250] D APU90_09605 hypothetical protein K00754 bshA; L-malate glycosyltransferase [EC:2.4.1.-] D APU90_10125 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D APU90_08625 hypothetical protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D APU90_00285 glutamine-synthetase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D APU90_09660 hypothetical protein K21284 acmA; 3-hydroxy-4-methylanthranilate adenylyltransferase [EC:2.7.7.97] D APU90_05325 hypothetical protein K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-] D APU90_00510 4-hydroxybenzoyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D APU90_06150 hypothetical protein K22306 gpgP; glucosyl-3-phosphoglycerate phosphatase [EC:3.1.3.85] D APU90_02595 metal-dependent phosphoesterase K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D APU90_02810 deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D APU90_05720 hypothetical protein K07503 nucS; endonuclease [EC:3.1.-.-] D APU90_01160 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D APU90_01560 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D APU90_08965 hypothetical protein K15525 mshB; N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase [EC:3.5.1.103] D APU90_06450 hydrolase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128] D APU90_09610 hypothetical protein K01463 bshB1; N-acetylglucosamine malate deacetylase 1 [EC:3.5.1.-] D APU90_08360 AAA family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D APU90_06920 hydrolase K25044 oleBC; cis-3-alkyl-4-acyloxetan-2-one decarboxylase / olefin beta-lactone synthetase [EC:4.1.1.114 6.1.3.1] D APU90_08615 NAD(P)H-hydrate dehydratase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D APU90_01645 hypothetical protein K17759 NAXE; NAD(P)H-hydrate epimerase [EC:5.1.99.6] D APU90_10620 cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase K15526 mshC; L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [EC:6.3.1.13] C 99981 Carbohydrate metabolism C 99982 Energy metabolism D APU90_00975 hypothetical protein K04488 iscU; nitrogen fixation protein NifU and related proteins C 99983 Lipid metabolism C 99984 Nucleotide metabolism D APU90_07485 hypothetical protein K03647 nrdI; protein involved in ribonucleotide reduction C 99985 Amino acid metabolism D APU90_01450 alanine racemase K06997 yggS; PLP dependent protein C 99986 Glycan metabolism C 99987 Cofactor metabolism C 99988 Secondary metabolism C 99999 Others D APU90_01680 hypothetical protein K15977 K15977; putative oxidoreductase D APU90_03935 hypothetical protein K06999 K06999; phospholipase/carboxylesterase B B 09192 Unclassified: genetic information processing C 99973 Transcription D APU90_04775 hypothetical protein K03704 cspA; cold shock protein D APU90_03095 cold-shock protein K03704 cspA; cold shock protein D APU90_03120 cold-shock protein K03704 cspA; cold shock protein C 99974 Translation C 99975 Protein processing D APU90_00435 trigger factor K03545 tig; trigger factor D APU90_02420 SsrA-binding protein K03664 smpB; SsrA-binding protein D APU90_07480 NrdH-redoxin K06191 nrdH; glutaredoxin-like protein NrdH D APU90_00820 Mg chelatase-like protein K07391 comM; magnesium chelatase family protein D APU90_07130 cytochrome C biogenesis protein K07399 resB; cytochrome c biogenesis protein D APU90_00965 hypothetical protein K07402 xdhC; xanthine dehydrogenase accessory factor C 99976 Replication and repair D APU90_05915 hypothetical protein K03630 radC; DNA repair protein RadC D APU90_00825 hypothetical protein K07460 yraN; putative endonuclease D APU90_00815 hypothetical protein K04096 smf; DNA processing protein D APU90_09850 AAA family ATPase K07478 ycaJ; putative ATPase D APU90_10420 transposase K07483 K07483; transposase C 99979 Viral proteins C 99998 Others D APU90_04325 restriction endonuclease K07504 K07504; predicted type IV restriction endonuclease B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D APU90_01690 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D APU90_04110 citrate:proton symporter K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family D APU90_02980 allantoin permease K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family C 99978 Cell growth D APU90_05530 DNA-binding protein K06346 jag; spoIIIJ-associated protein C 99993 Cell motility C 99995 Signaling proteins D APU90_08940 GTP-binding protein TypA K06207 typA; GTP-binding protein D APU90_01265 phosphate starvation-inducible protein PhoH K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D APU90_08780 ATP-binding protein K07175 phoH2; PhoH-like ATPase D APU90_07215 hypothetical protein K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins C 99994 Others D APU90_03200 PhoU family transcriptional regulator K02039 phoU; phosphate transport system protein D APU90_09455 tellurium resistance protein TerC K05794 terC; tellurite resistance protein TerC B B 09194 Poorly characterized C 99996 General function prediction only D APU90_07560 hypothetical protein K03558 cvpA; membrane protein required for colicin V production D APU90_00500 globin K06886 glbN; hemoglobin D APU90_01020 hypothetical protein K07001 K07001; NTE family protein D APU90_10365 Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D APU90_10370 ABC transporter permease K09015 sufD; Fe-S cluster assembly protein SufD D APU90_08040 hypothetical protein K07058 K07058; membrane protein D APU90_00145 cysteine desufuration protein SufE K02426 sufE; cysteine desulfuration protein SufE D APU90_04445 hypothetical protein K07146 K07146; UPF0176 protein D APU90_02995 hypothetical protein K04750 phnB; PhnB protein D APU90_08700 hypothetical protein K03744 lemA; LemA protein D APU90_02460 hypothetical protein K03975 dedA; membrane-associated protein D APU90_09565 hypothetical protein K03975 dedA; membrane-associated protein D APU90_06645 hypothetical protein K01421 yhgE; putative membrane protein D APU90_04915 hypothetical protein K08972 K08972; putative membrane protein D APU90_06685 hypothetical protein K08981 K08981; putative membrane protein D APU90_01670 epimerase K08987 K08987; putative membrane protein C 99997 Function unknown D APU90_02905 hypothetical protein K06889 K06889; uncharacterized protein D APU90_00870 hypothetical protein K06960 K06960; uncharacterized protein D APU90_04095 acetyltransferase K06975 K06975; uncharacterized protein D APU90_00740 alpha/beta hydrolase K07018 K07018; uncharacterized protein D APU90_02035 nucleoside-diphosphate sugar epimerase K07071 K07071; uncharacterized protein D APU90_04800 hypothetical protein K07090 K07090; uncharacterized protein D APU90_07675 metallophosphatase K07098 K07098; uncharacterized protein D APU90_00310 hypothetical protein K07164 K07164; uncharacterized protein D APU90_05540 hypothetical protein K08998 K08998; uncharacterized protein D APU90_02715 septum formation initiator family protein K09009 K09009; uncharacterized protein D APU90_02525 hypothetical protein K09118 K09118; uncharacterized protein D APU90_06680 hypothetical protein K09167 K09167; uncharacterized protein D APU90_05225 ABC transporter K09781 K09781; uncharacterized protein D APU90_09205 hypothetical protein K09861 K09861; uncharacterized protein D APU90_01290 hypothetical protein K09940 K09940; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 14, 2024