+F Repair protein KO #

  DNA Repair and Recombination Proteins - Sulfolobus acidocaldarius DSM 639

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D Saci_1260 methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Saci_1227 phr; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E Saci_1497 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex E Saci_0826 pcnA; DNA polymerase sliding clamp A K04802 PCNA; proliferating cell nuclear antigen E Saci_1280 DNA polymerase sliding clamp C K04802 PCNA; proliferating cell nuclear antigen E Saci_0817 pcnB; DNA polymerase sliding clamp B K04802 PCNA; proliferating cell nuclear antigen E Saci_0775 XPG/RAD25 related endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] E Saci_0788 thermostable DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E Saci_0192 XPD/Rad3 related DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors E Saci_0604 XPF/RAD1 repair endonuclease K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] E Saci_0788 thermostable DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors E Saci_0826 pcnA; DNA polymerase sliding clamp A K04802 PCNA; proliferating cell nuclear antigen E Saci_1280 DNA polymerase sliding clamp C K04802 PCNA; proliferating cell nuclear antigen E Saci_0817 pcnB; DNA polymerase sliding clamp B K04802 PCNA; proliferating cell nuclear antigen E Saci_0788 thermostable DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors D Saci_0826 pcnA; DNA polymerase sliding clamp A K04802 PCNA; proliferating cell nuclear antigen D Saci_1280 DNA polymerase sliding clamp C K04802 PCNA; proliferating cell nuclear antigen D Saci_0817 pcnB; DNA polymerase sliding clamp B K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D Saci_0153 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Saci_0121 nudT; 7,8-dihydro-8-oxoguanine triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D Saci_1260 methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Saci_1227 phr; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E Saci_0159 uracil DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E Saci_1756 uracil DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E Saci_1497 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E Saci_0129 exonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E Saci_0015 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E Saci_0544 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ D DNA ligase D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme D DNA ligase D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E Saci_0051 rad50; DNA double-strand break repair rad50 ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E Saci_0052 mre11; DNA double-strand break repair Mre11 nuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins D AddAB pathway proteins D Other HR factor E Saci_2011 conserved Archaeal protein K15342 cas1; CRISP-associated protein Cas1 E Saci_1881 hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E Saci_0715 DNA recombination protein RadA K04483 radA; DNA repair protein RadA E Saci_1558 conserved Archaeal holliday junction resolvase K03552 hjr; holliday junction resolvase [EC:3.1.21.10] E Saci_1741 hjc; conserved Archaeal holliday junction resolvase K03552 hjr; holliday junction resolvase [EC:3.1.21.10] E Saci_0051 rad50; DNA double-strand break repair rad50 ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E Saci_0052 mre11; DNA double-strand break repair Mre11 nuclease K03547 sbcD; DNA repair protein SbcD/Mre11 E Saci_0053 conserved Archaeal protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase E Saci_0050 nurA; putative 5'-3' nuclease K25510 nurA; DNA double-strand break repair nuclease NurA [EC:3.1.-.-] E Saci_0263 DNA helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F Saci_1371 top1; DNA topoisomerase I family A K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway E Facilitator E Supressor B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D Saci_0554 polIV; DNA polymerase IV K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7] C Other SOS response factors B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D Saci_1500 putative ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D Saci_0814 hypothetical DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D Saci_1320 putative ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D Saci_0153 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Saci_0121 nudT; 7,8-dihydro-8-oxoguanine triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Saci_1353 nrd; ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Saci_1112 hypothetical protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D Saci_2188 ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D Saci_2212 ribonucleotide reductase, small chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D Saci_2220 hypothetical protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D Saci_1409 conserved Archaeal protein K22585 nreA; DNA repair protein NreA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024