+E
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Saimiri boliviensis boliviensis (Bolivian squirrel monkey)</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        101037169 POLR2A; DNA-directed RNA polymerase II subunit RPB1	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        101031275 POLR2B; DNA-directed RNA polymerase II subunit RPB2	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        101032609 POLR2C; DNA-directed RNA polymerase II subunit RPB3	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        101039719 POLR2J; DNA-directed RNA polymerase II subunit RPB11-a	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        101039929 POLR2D; DNA-directed RNA polymerase II subunit RPB4 isoform X2	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        101039505 POLR2G; DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        101030670 POLR2I; DNA-directed RNA polymerase II subunit RPB9 isoform X2	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
D      Pol I, II, III common subunits
E        101051807 POLR2E; DNA-directed RNA polymerases I, II, and III subunit RPABC1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        101051832 POLR2F; DNA-directed RNA polymerases I, II, and III subunit RPABC2 isoform X1	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        101046822 POLR2H; DNA-directed RNA polymerases I, II, and III subunit RPABC3 isoform X1	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
D      Pol IV and V specific subunits
C    Basal transcription factors
D      TFIIA
E        101038512 GTF2A1; transcription initiation factor IIA subunit 1	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        101037537 GTF2A1L; TFIIA-alpha and beta-like factor isoform X1	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        101047053 GTF2A2; transcription initiation factor IIA subunit 2	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        101049664 GTF2B; transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        101038765 TBPL2; TATA box-binding protein-like protein 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        101046128 TBPL1; TATA box-binding protein-like protein 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        101040658 TBP; TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        101048616 TAF1; transcription initiation factor TFIID subunit 1	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        101045275 TAF2; transcription initiation factor TFIID subunit 2	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        101047746 TAF3; transcription initiation factor TFIID subunit 3	K14650 TAF3; transcription initiation factor TFIID subunit 3 
E        101040641 TAF4B; transcription initiation factor TFIID subunit 4B isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        101046014 TAF4; transcription initiation factor TFIID subunit 4	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        101046376 TAF5; transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        101038091 TAF5L; TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        101038151 TAF6L; TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        101030651 TAF6; transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        101035399 TAF7; transcription initiation factor TFIID subunit 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        101053700 TAF7L; transcription initiation factor TFIID subunit 7-like	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        101029519 TAF8; transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        101030188 TAF9; transcription initiation factor TFIID subunit 9	K14535 TAF9; transcription initiation factor TFIID subunit 9 
E        101046866 TAF9B; transcription initiation factor TFIID subunit 9B isoform X1	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        101031710 TAF10; transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        101029953 TAF11; transcription initiation factor TFIID subunit 11 isoform X1	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        101053873 TAF13; transcription initiation factor TFIID subunit 13	K03127 TAF13; transcription initiation factor TFIID subunit 13 
E        101046318 TAF15; TATA-binding protein-associated factor 2N	K14651 TAF15; transcription initiation factor TFIID subunit 15 
E        101041530 LOW QUALITY PROTEIN: TATA-binding protein-associated factor 2N-like	K14651 TAF15; transcription initiation factor TFIID subunit 15 
D      TFIIE
E        101048027 GTF2E1; general transcription factor IIE subunit 1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        101044560 GTF2E2; transcription initiation factor IIE subunit beta	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        101049955 GTF2F1; general transcription factor IIF subunit 1	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        101045078 GTF2F2; general transcription factor IIF subunit 2	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        101045909 GTF2H1; general transcription factor IIH subunit 1	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        101052010 general transcription factor IIH subunit 2	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        104652787 GTF2H3; general transcription factor IIH subunit 3 isoform X1	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        104650362 GTF2H4; general transcription factor IIH subunit 4	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        101032001 ERCC3; TFIIH basal transcription factor complex helicase XPB subunit	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        101046896 ERCC2; TFIIH basal transcription factor complex helicase XPD subunit	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        104650501 LOW QUALITY PROTEIN: cyclin-dependent kinase 7-like	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        101042131 MNAT1; CDK-activating kinase assembly factor MAT1	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        101032444 CCNH; cyclin-H isoform X2	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        101049739 MED6; mediator of RNA polymerase II transcription subunit 6 isoform X2	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        101045293 MED8; LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 8	K15129 MED8; mediator of RNA polymerase II transcription subunit 8 
E        101038663 MED11; mediator of RNA polymerase II transcription subunit 11	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        101041937 MED17; mediator of RNA polymerase II transcription subunit 17	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        101038333 MED18; mediator of RNA polymerase II transcription subunit 18	K15135 MED18; mediator of RNA polymerase II transcription subunit 18 
E        101053772 MED19; mediator of RNA polymerase II transcription subunit 19	K15137 MED19; mediator of RNA polymerase II transcription subunit 19 
E        101048057 MED20; mediator of RNA polymerase II transcription subunit 20	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        101053490 LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 22	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        101030534 LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 28-like	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
E        101043106 MED28; mediator of RNA polymerase II transcription subunit 28	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
E        101033668 MED29; mediator of RNA polymerase II transcription subunit 29	K15142 MED29; mediator of RNA polymerase II transcription subunit 29 
E        101053757 MED30; mediator of RNA polymerase II transcription subunit 30	K15143 MED30; mediator of RNA polymerase II transcription subunit 30 
D      Middle
E        101039711 MED1; mediator of RNA polymerase II transcription subunit 1	K15144 MED1; mediator of RNA polymerase II transcription subunit 1 
E        101036829 MED4; mediator of RNA polymerase II transcription subunit 4	K15146 MED4; mediator of RNA polymerase II transcription subunit 4 
E        101030027 MED7; mediator of RNA polymerase II transcription subunit 7	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        101054179 MED9; mediator of RNA polymerase II transcription subunit 9	K15149 MED9; mediator of RNA polymerase II transcription subunit 9 
E        101049080 mediator of RNA polymerase II transcription subunit 9-like	K15149 MED9; mediator of RNA polymerase II transcription subunit 9 
E        101045379 MED10; mediator of RNA polymerase II transcription subunit 10	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        101051910 MED21; mediator of RNA polymerase II transcription subunit 21	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        101050447 mediator of RNA polymerase II transcription subunit 31 isoform X2	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
E        101048001 mediator of RNA polymerase II transcription subunit 31-like	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        101050934 MED14; mediator of RNA polymerase II transcription subunit 14	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
E        101029228 MED15; mediator of RNA polymerase II transcription subunit 15 isoform X1	K15157 MED15; mediator of RNA polymerase II transcription subunit 15 
E        101031157 mediator of RNA polymerase II transcription subunit 16 isoform X1	K15159 MED16; mediator of RNA polymerase II transcription subunit 16 
D      CDK-module
E        101041458 CDK8; cyclin-dependent kinase 8 isoform X1	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        101048030 CDK19; cyclin-dependent kinase 19 isoform X1	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        101037112 CCNC; cyclin-C isoform X1	K15161 CCNC; cyclin-C 
E        101041827 MED12; mediator of RNA polymerase II transcription subunit 12 isoform X3	K15162 MED12; mediator of RNA polymerase II transcription subunit 12 
E        101052443 MED12L; mediator of RNA polymerase II transcription subunit 12-like protein	K15162 MED12; mediator of RNA polymerase II transcription subunit 12 
E        101053326 MED13; mediator of RNA polymerase II transcription subunit 13	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
E        101054402 MED13L; mediator of RNA polymerase II transcription subunit 13-like isoform X1	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
D      Other mediators
E        101037609 MED23; mediator of RNA polymerase II transcription subunit 23 isoform X1	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        101038205 MED24; mediator of RNA polymerase II transcription subunit 24 isoform X5	K15167 MED24; mediator of RNA polymerase II transcription subunit 24 
E        101044469 MED25; mediator of RNA polymerase II transcription subunit 25 isoform X1	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        101027730 MED26; mediator of RNA polymerase II transcription subunit 26	K15169 MED26; mediator of RNA polymerase II transcription subunit 26 
E        101053253 MED27; mediator of RNA polymerase II transcription subunit 27 isoform X1	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        101044914 KAT2A; histone acetyltransferase KAT2A	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        101035750 KAT2B; histone acetyltransferase KAT2B	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        101042611 TRRAP; transformation/transcription domain-associated protein isoform X7	K08874 TRRAP; transformation/transcription domain-associated protein 
E        101045639 SUPT3H; transcription initiation protein SPT3 homolog	K11313 SUPT3H; transcription initiation protein SPT3 
E        101049164 TADA2A; transcriptional adapter 2-alpha	K11314 TADA2A; transcriptional adapter 2-alpha 
E        104652442 TADA2B; transcriptional adapter 2-beta	K15127 TADA2B; transcriptional adapter 2-beta 
E        101042364 TADA3; transcriptional adapter 3 isoform X1	K11315 TADA3; transcriptional adapter 3 
E        101043643 TADA1; transcriptional adapter 1 isoform X1	K11317 TADA1; transcriptional adapter 1 
E        101045275 TAF2; transcription initiation factor TFIID subunit 2	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        101040641 TAF4B; transcription initiation factor TFIID subunit 4B isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        101046014 TAF4; transcription initiation factor TFIID subunit 4	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        101046376 TAF5; transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        101038091 TAF5L; TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        101038151 TAF6L; TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        101030651 TAF6; transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        101035399 TAF7; transcription initiation factor TFIID subunit 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        101053700 TAF7L; transcription initiation factor TFIID subunit 7-like	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        101030188 TAF9; transcription initiation factor TFIID subunit 9	K14535 TAF9; transcription initiation factor TFIID subunit 9 
E        101046866 TAF9B; transcription initiation factor TFIID subunit 9B isoform X1	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        101031710 TAF10; transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        101034618 ATXN7L3; ataxin-7-like protein 3 isoform X4	K11363 SGF11; SAGA-associated factor 11 
E        101051814 CCDC101; SAGA-associated factor 29 homolog	K11364 SGF29; SAGA-associated factor 29 
E        101053709 SUPT7L; STAGA complex 65 subunit gamma	K11316 SUPT7L; STAGA complex 65 subunit gamma 
E        101030461 ATXN7L1; ataxin-7-like protein 1 isoform X10	K11318 ATXN7; ataxin-7 
E        101039940 ATXN7L2; ataxin-7-like protein 2	K11318 ATXN7; ataxin-7 
E        101034278 ATXN7; LOW QUALITY PROTEIN: ataxin-7	K11318 ATXN7; ataxin-7 
E        101038791 CHD1; chromodomain-helicase-DNA-binding protein 1	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        101036791 ENY2; transcription and mRNA export factor ENY2 isoform X2	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        101049730 USP27X; ubiquitin carboxyl-terminal hydrolase 27	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        101054484 USP51; ubiquitin carboxyl-terminal hydrolase 51	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        101051608 USP22; ubiquitin carboxyl-terminal hydrolase 22	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        101050172 SF3B3; splicing factor 3B subunit 3	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        101052445 SMARCA4; transcription activator BRG1	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        101035707 SMARCA2; probable global transcription activator SNF2L2 isoform X1	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        101037648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        101040225 SMARCC1; SWI/SNF complex subunit SMARCC1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        101028240 SMARCC2; SWI/SNF complex subunit SMARCC2	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        101029512 SMARCD1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 isoform X2	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        101041234 SMARCD3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X1	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        101038519 SMARCD2; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        101033768 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	K11651 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 
E        101037287 ACTB; actin, cytoplasmic 1	K05692 ACTB_G1; actin beta/gamma 1 
E        101050060 actin, cytoplasmic 2-like isoform X1	K05692 ACTB_G1; actin beta/gamma 1 
E        101049910 ACTG1; actin, cytoplasmic 2	K05692 ACTB_G1; actin beta/gamma 1 
E        104651678 actin, cytoplasmic 1-like	K05692 ACTB_G1; actin beta/gamma 1 
E        101034204 ACTL6A; LOW QUALITY PROTEIN: actin-like protein 6A	K11340 ACTL6A; actin-like protein 6A 
E        101051206 ACTL6B; actin-like protein 6B isoform X1	K11652 ACTL6B; actin-like protein 6B 
E        101044635 ARID1B; AT-rich interactive domain-containing protein 1B isoform X6	K11653 ARID1; AT-rich interactive domain-containing protein 1 
E        101037097 ARID1A; AT-rich interactive domain-containing protein 1A isoform X1	K11653 ARID1; AT-rich interactive domain-containing protein 1 
E        101031750 ARID2; AT-rich interactive domain-containing protein 2	K11765 ARID2; AT-rich interactive domain-containing protein 2 
E        101049097 PBRM1; protein polybromo-1	K11757 PBRM1; protein polybromo-1 
D      SWI/SNF complex
E        101037648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
E        101046036 SUB1; activated RNA polymerase II transcriptional coactivator p15	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        101052672 CCAR1; cell division cycle and apoptosis regulator protein 1	K25827 CCAR1; cell division cycle and apoptosis regulator protein 1 
E        101035108 CALCOCO1; calcium-binding and coiled-coil domain-containing protein 1	K25828 CALCOCO1; calcium-binding and coiled-coil domain-containing protein 1 
C    Other transcription-related factors
D      Transcription elongation factors
E        101046799 TCEA1; transcription elongation factor A protein 1 isoform X1	K03145 TFIIS; transcription elongation factor S-II 
E        101030330 TCEA2; transcription elongation factor A protein 2 isoform X1	K03145 TFIIS; transcription elongation factor S-II 
E        101043887 TCEA3; transcription elongation factor A protein 3 isoform X1	K03145 TFIIS; transcription elongation factor S-II 
E        101045166 SUPT4H1; transcription elongation factor SPT4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        101034614 SUPT5H; transcription elongation factor SPT5 isoform X1	K15172 SUPT5H; transcription elongation factor SPT5 
E        101033286 SUPT6H; transcription elongation factor SPT6	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        101045601 TTF2; transcription termination factor 2	K15173 TTF2; transcription termination factor 2 [EC:5.6.2.-] 
E        101050463 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 isoform X1	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        101052216 CPSF1; cleavage and polyadenylation specificity factor subunit 1	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        101042576 CPSF3; cleavage and polyadenylation specificity factor subunit 3	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        101041453 CPSF4; cleavage and polyadenylation specificity factor subunit 4 isoform X3	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        101030626 serine/threonine-protein phosphatase PP1-alpha catalytic subunit	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        101050671 PPP1CC; serine/threonine-protein phosphatase PP1-gamma catalytic subunit	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        101048497 PPP1CA; serine/threonine-protein phosphatase PP1-alpha catalytic subunit	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        101048398 PPP1CB; serine/threonine-protein phosphatase PP1-beta catalytic subunit	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        101052305 SYMPK; symplekin	K06100 SYMPK; symplekin 
E        101032690 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        101027714 LOW QUALITY PROTEIN: putative RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like protein 1	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        101047908 XRN2; 5'-3' exoribonuclease 2 isoform X1	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        101048625 DXO; decapping and exoribonuclease protein	K14845 RAI1; RAT1-interacting protein 
E        101028967 RPRD1B; regulation of nuclear pre-mRNA domain-containing protein 1B isoform X1	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        101050302 RPRD1A; regulation of nuclear pre-mRNA domain-containing protein 1A	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        101035402 SFPQ; splicing factor, proline- and glutamine-rich isoform X1	K13219 SFPQ; splicing factor, proline- and glutamine-rich 
E        104652307 SCAF8; protein SCAF8 isoform X1	K13191 RBM16; RNA-binding protein 16 
E        101053841 SCAF4; splicing factor, arginine/serine-rich 15	K13167 SCAF4; SR-related and CTD-associated factor 4 
E        101030984 SETX; probable helicase senataxin isoform X1	K10706 SETX; senataxin [EC:5.6.2.-] 
E        101052621 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        101032825 PAF1; RNA polymerase II-associated factor 1 homolog	K15174 PAF1; RNA polymerase II-associated factor 1 
E        101051229 CDC73; parafibromin	K15175 CDC73; parafibromin 
E        101040635 LOW QUALITY PROTEIN: parafibromin-like	K15175 CDC73; parafibromin 
E        101052602 CTR9; RNA polymerase-associated protein CTR9 homolog	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        101038304 LEO1; RNA polymerase-associated protein LEO1	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        101041263 RTF1; RNA polymerase-associated protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
E        101046344 NELFA; negative elongation factor A	K15179 WHSC2; negative elongation factor A 
E        101029966 NELFB; negative elongation factor B	K15180 COBRA1; negative elongation factor B 
E        101043775 NELFCD; negative elongation factor C/D	K15181 TH1L; negative elongation factor C/D 
E        104650312 NELFE; negative elongation factor E	K15182 RDBP; negative elongation factor E 
D      Super elongation complex (SEC)
E        101051078 ELL3; RNA polymerase II elongation factor ELL3 isoform X1	K15183 ELL; RNA polymerase II elongation factor ELL 
E        101037997 ELL; RNA polymerase II elongation factor ELL	K15183 ELL; RNA polymerase II elongation factor ELL 
E        101043586 ELL2; RNA polymerase II elongation factor ELL2	K15183 ELL; RNA polymerase II elongation factor ELL 
E        101050392 AFF1; AF4/FMR2 family member 1 isoform X3	K15184 AFF1; AF4/FMR2 family member 1 
E        101034042 AFF4; AF4/FMR2 family member 4	K15185 AFF4; AF4/FMR2 family member 4 
E        101044149 EAF1; ELL-associated factor 1 isoform X2	K15186 EAF; ELL-associated factor 
E        101042556 EAF2; ELL-associated factor 2	K15186 EAF; ELL-associated factor 
E        101042741 MLLT1; protein ENL	K15187 MLLT1_3; YEATS domain-containing protein 1/3 
E        101036629 MLLT3; protein AF-9	K15187 MLLT1_3; YEATS domain-containing protein 1/3 
E        101042389 CCNT2; cyclin-T2	K15188 CCNT; cyclin T 
E        101038646 CCNT1; cyclin-T1	K15188 CCNT; cyclin T 
E        101040847 CDK9; cyclin-dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      Little elongation complex (LEC)
E        101051078 ELL3; RNA polymerase II elongation factor ELL3 isoform X1	K15183 ELL; RNA polymerase II elongation factor ELL 
E        101037997 ELL; RNA polymerase II elongation factor ELL	K15183 ELL; RNA polymerase II elongation factor ELL 
E        101043586 ELL2; RNA polymerase II elongation factor ELL2	K15183 ELL; RNA polymerase II elongation factor ELL 
E        101045700 ICE1; little elongation complex subunit 1	K26143 ICE1; little elongation complex subunit 1 
E        101049070 ICE2; little elongation complex subunit 2 isoform X1	K26144 ICE2; little elongation complex subunit 2 
E        101030602 ZC3H8; zinc finger CCCH domain-containing protein 8 isoform X1	K24388 ZC3H8; zinc finger CCCH domain-containing protein 8 
D      Brd4/P-TEFb complex
E        101043434 BRD4; bromodomain-containing protein 4	K11722 BRD4; bromodomain-containing protein 4 
E        101042389 CCNT2; cyclin-T2	K15188 CCNT; cyclin T 
E        101038646 CCNT1; cyclin-T1	K15188 CCNT; cyclin T 
E        101040847 CDK9; cyclin-dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        101050321 HEXIM1; protein HEXIM1	K15189 HEXIM1_2; protein HEXIM1/2 
E        101050640 HEXIM2; protein HEXIM2 isoform X2	K15189 HEXIM1_2; protein HEXIM1/2 
E        101035810 MEPCE; 7SK snRNA methylphosphate capping enzyme	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        101039921 LARP7; la-related protein 7 isoform X1	K15191 LARP7; La-related protein 7 
E        101042389 CCNT2; cyclin-T2	K15188 CCNT; cyclin T 
E        101038646 CCNT1; cyclin-T1	K15188 CCNT; cyclin T 
E        101040847 CDK9; cyclin-dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      DBIRD complex
E        101046243 CCAR2; cell cycle and apoptosis regulator protein 2	K25816 CCAR2; cell cycle and apoptosis regulator protein 2 
E        101030969 ZNF326; DBIRD complex subunit ZNF326	K13204 ZNF326; zinc finger protein 326 
D      Others
E        101054087 GTF2I; general transcription factor II-I isoform X1	K03121 TFII-I; transcription initiation factor TFII-I 
E        101054408 GTF2IRD1; general transcription factor II-I repeat domain-containing protein 1	K27274 GTF2IRD1; general transcription factor II-I repeat domain-containing protein 1 
E        101052292 BTAF1; TATA-binding protein-associated factor 172	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        101035171 DR1; protein Dr1	K21751 DR1; down-regulator of transcription 1 
E        101045519 DRAP1; dr1-associated corepressor	K21752 DRAP1; Dr1-associated corepressor 
E        101050037 SPTY2D1; protein SPT2 homolog	K15193 SPTY2D1; protein SPT2 
E        101028459 AFF2; AF4/FMR2 family member 2 isoform X3	K15194 AFF2; AF4/FMR2 family member 2 
E        101052442 AFF3; AF4/FMR2 family member 3	K15195 AFF3; AF4/FMR2 family member 3 
E        101044365 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase isoform X1	K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16] 
E        101042769 CTDSP2; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2 isoform X2	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        101037721 CTDSPL; CTD small phosphatase-like protein	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        101033358 CTDSP1; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X3	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        101036971 IWS1; protein IWS1 homolog isoform X1	K17498 SPN1; transcription factor SPN1 
E        101048761 CSRNP1; cysteine/serine-rich nuclear protein 1	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        101042324 CSRNP2; cysteine/serine-rich nuclear protein 2	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        101036786 CSRNP3; cysteine/serine-rich nuclear protein 3	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        101040162 RPAP1; RNA polymerase II-associated protein 1 isoform X1	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        101038974 RPAP2; putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 isoform X1	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        101045219 RPAP3; RNA polymerase II-associated protein 3	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        101032947 CCNK; cyclin-K	K23326 CCNK; cyclin K 
E        101054040 GPN1; GPN-loop GTPase 1	K24104 GPN; GPN-loop GTPase 
E        101038485 GPN2; GPN-loop GTPase 2	K24104 GPN; GPN-loop GTPase 
E        101052370 GPN3; GPN-loop GTPase 3 isoform X1	K24104 GPN; GPN-loop GTPase 
E        101029244 TCEAL1; transcription elongation factor A protein-like 1	K26769 TCEAL1; transcription elongation factor A protein-like 1 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        101034373 POLR3A; DNA-directed RNA polymerase III subunit RPC1	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        101045998 POLR3B; DNA-directed RNA polymerase III subunit RPC2	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        101037659 POLR1C; DNA-directed RNA polymerases I and III subunit RPAC1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        101035700 DNA-directed RNA polymerases I and III subunit RPAC2-like	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
E        104650382 DNA-directed RNA polymerases I and III subunit RPAC2	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        101046306 POLR3C; DNA-directed RNA polymerase III subunit RPC3	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        101043588 POLR3D; DNA-directed RNA polymerase III subunit RPC4	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        101030531 POLR3E; DNA-directed RNA polymerase III subunit RPC5 isoform X3	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        101027886 POLR3F; DNA-directed RNA polymerase III subunit RPC6	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        101054423 POLR3G; DNA-directed RNA polymerase III subunit RPC7	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        101030646 POLR3H; DNA-directed RNA polymerase III subunit RPC8	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        101050144 DNA-directed RNA polymerase III subunit RPC9	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        101048526 POLR3K; DNA-directed RNA polymerase III subunit RPC10	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        101051807 POLR2E; DNA-directed RNA polymerases I, II, and III subunit RPABC1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        101051832 POLR2F; DNA-directed RNA polymerases I, II, and III subunit RPABC2 isoform X1	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        101046822 POLR2H; DNA-directed RNA polymerases I, II, and III subunit RPABC3 isoform X1	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
C    Basal transcription factors
D      TFIIIA
E        101029179 GTF3A; transcription factor IIIA	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        101038765 TBPL2; TATA box-binding protein-like protein 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        101046128 TBPL1; TATA box-binding protein-like protein 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        101040658 TBP; TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        101029165 transcription factor IIIB 90 kDa subunit isoform X1	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        101028233 BRF2; transcription factor IIIB 50 kDa subunit	K15197 BRF2; transcription factor IIIB 50 kDa subunit 
E        101027640 BDP1; transcription factor TFIIIB component B'' homolog isoform X2	K15198 BDP1; transcription factor TFIIIB component B'' 
D      TFIIIC
E        101045368 GTF3C1; general transcription factor 3C polypeptide 1	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        101029650 GTF3C2; general transcription factor 3C polypeptide 2	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        101045662 GTF3C3; general transcription factor 3C polypeptide 3	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        101029492 GTF3C4; general transcription factor 3C polypeptide 4	K11310 GTF3C4; general transcription factor 3C polypeptide 4 [EC:2.3.1.48] 
E        101054414 GTF3C5; general transcription factor 3C polypeptide 5	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        101040671 general transcription factor 3C polypeptide 6	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
D      TFIIIC, fungi type
E        101054414 GTF3C5; general transcription factor 3C polypeptide 5	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        101045662 GTF3C3; general transcription factor 3C polypeptide 3	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        101045956 SNAPC1; snRNA-activating protein complex subunit 1 isoform X1	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        101036152 SNAPC2; snRNA-activating protein complex subunit 2 isoform X4	K15209 SNAPC2; snRNA-activating protein complex subunit 2 
E        101028418 LOW QUALITY PROTEIN: snRNA-activating protein complex subunit 3-like	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
E        101044940 SNAPC3; snRNA-activating protein complex subunit 3	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
E        101039036 SNAPC4; snRNA-activating protein complex subunit 4 isoform X1	K09453 SNAPC4; snRNA-activating protein complex subunit 4 
E        101041341 SNAPC5; snRNA-activating protein complex subunit 5	K15211 SNAPC5; snRNA-activating protein complex subunit 5 
D      Octamer transcription factors
E        101045473 POU2F1; POU domain, class 2, transcription factor 1 isoform X1	K09364 POU2F; POU domain transcription factor, class 2 
E        101052978 POU2F2; POU domain, class 2, transcription factor 2 isoform X1	K09364 POU2F; POU domain transcription factor, class 2 
E        101041491 POU2F3; POU domain, class 2, transcription factor 3 isoform X1	K09364 POU2F; POU domain transcription factor, class 2 
E        101031159 POU5F1; POU domain, class 5, transcription factor 1 isoform X1	K09367 POU5F; POU domain transcription factor, class 5 
D      Others
E        101041266 ZNF143; zinc finger protein 143	K20828 ZNF143_76; zinc finger protein 143/76 
E        101032148 ZNF76; zinc finger protein 76 isoform X1	K20828 ZNF143_76; zinc finger protein 143/76 
E        101027943 MAF1; repressor of RNA polymerase III transcription MAF1 homolog isoform X2	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        101049872 POLR1A; DNA-directed RNA polymerase I subunit RPA1	K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] 
E        101031227 POLR1B; DNA-directed RNA polymerase I subunit RPA2	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        101037659 POLR1C; DNA-directed RNA polymerases I and III subunit RPAC1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        101035700 DNA-directed RNA polymerases I and III subunit RPAC2-like	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
E        104650382 DNA-directed RNA polymerases I and III subunit RPAC2	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        101049232 DNA-directed RNA polymerase I subunit RPA49	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        101038468 TWISTNB; DNA-directed RNA polymerase I subunit RPA43	K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43 
E        101047431 CD3EAP; DNA-directed RNA polymerase I subunit RPA34	K25436 POLR1G; DNA-directed RNA polymerase I subunit RPA34 
E        101049894 ZNRD1; DNA-directed RNA polymerase I subunit RPA12	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        101051807 POLR2E; DNA-directed RNA polymerases I, II, and III subunit RPABC1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        101051832 POLR2F; DNA-directed RNA polymerases I, II, and III subunit RPABC2 isoform X1	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        101046822 POLR2H; DNA-directed RNA polymerases I, II, and III subunit RPABC3 isoform X1	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
C    Basal transcription factors
D      SL1/TIF-1B
E        101038765 TBPL2; TATA box-binding protein-like protein 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        101046128 TBPL1; TATA box-binding protein-like protein 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        101040658 TBP; TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        101040036 TAF1A; TATA box-binding protein-associated factor RNA polymerase I subunit A isoform X1	K15212 TAF1A; TATA box-binding protein-associated factor RNA polymerase I subunit A 
E        101048738 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B isoform X1	K15213 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B 
E        101034369 TAF1C; TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X1	K15214 TAF1C; TATA box-binding protein-associated factor RNA polymerase I subunit C 
E        101041612 TAF1D; TATA box-binding protein-associated factor RNA polymerase I subunit D	K15215 TAF1D; TATA box-binding protein-associated factor RNA polymerase I subunit D 
C    Other transcription-related factors
D      UBF
E        101033990 UBTF; nucleolar transcription factor 1 isoform X1	K09273 UBTF; upstream-binding transcription factor 
D      Transcription initiation factors
E        101031675 RRN3; LOW QUALITY PROTEIN: RNA polymerase I-specific transcription initiation factor RRN3	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
D      Transcription elongation factors
E        101045166 SUPT4H1; transcription elongation factor SPT4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        101034614 SUPT5H; transcription elongation factor SPT5 isoform X1	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        101040352 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
E        101036798 BAZ2A; bromodomain adjacent to zinc finger domain protein 2A isoform X1	K15224 BAZ2A; bromodomain adjacent to zinc finger domain protein 2A 
D      CTDK-I complex
D      Transcription termination factors
E        101030351 TTF1; transcription termination factor 1	K15225 TTF1; transcription termination factor 1 
E        101042665 PTRF; polymerase I and transcript release factor	K19387 PTRF; polymerase I and transcript release factor 
D      Others
E        101029832 NOLC1; nucleolar and coiled-body phosphoprotein 1 isoform X2	K25818 NOLC1; nucleolar and coiled-body phosphoprotein 1 
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
D      Sigma factors
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        101049664 GTF2B; transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        101048027 GTF2E1; general transcription factor IIE subunit 1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
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#Last updated: April 9, 2024