+D GENES KO
#
KEGG Orthology (KO) - Shewanella sp. MR-4
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:she00010]
D Shewmr4_2968 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Shewmr4_0649 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Shewmr4_0776 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Shewmr4_1022 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Shewmr4_2021 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Shewmr4_2023 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Shewmr4_0775 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Shewmr4_0045 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Shewmr4_1115 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Shewmr4_2048 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Shewmr4_1592 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Shewmr4_0428 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Shewmr4_0429 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Shewmr4_0430 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Shewmr4_1786 Alcohol dehydrogenase, zinc-binding domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D Shewmr4_1683 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D Shewmr4_2762 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D Shewmr4_0249 Aldehyde dehydrogenase (NAD(+)) K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D Shewmr4_2362 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Shewmr4_1985 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D Shewmr4_3409 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D Shewmr4_2031 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Shewmr4_2388 Aldose 1-epimerase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D Shewmr4_0152 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D Shewmr4_1763 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D Shewmr4_2648 PTS system, glucose-like IIB subunint K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
C 00020 Citrate cycle (TCA cycle) [PATH:she00020]
D Shewmr4_1630 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D Shewmr4_0437 aconitase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D Shewmr4_1606 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D Shewmr4_2720 Isocitrate dehydrogenase (NAD(+)) K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41]
D Shewmr4_1635 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D Shewmr4_1636 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D Shewmr4_0430 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Shewmr4_1638 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Shewmr4_1637 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Shewmr4_1633 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Shewmr4_1634 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Shewmr4_1631 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Shewmr4_1632 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D Shewmr4_0404 succinate dehydrogenase subunit A K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D Shewmr4_0405 succinate dehydrogenase subunit B K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D Shewmr4_0402 fumarate reductase respiratory complex, transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C
D Shewmr4_0403 fumarate reductase respiratory complex, transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C
D Shewmr4_0808 flavocytochrome c K26318 fccA; fumarate reductase (cytochrome) [EC:1.3.2.4]
D Shewmr4_2124 fumarase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D Shewmr4_3339 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Shewmr4_0152 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D Shewmr4_0428 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Shewmr4_0429 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:she00030]
D Shewmr4_2968 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Shewmr4_2046 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Shewmr4_2045 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D Shewmr4_1609 6-phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D Shewmr4_3692 ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Shewmr4_0773 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Shewmr4_2967 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D Shewmr4_0974 ribose-5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D Shewmr4_2965 Phosphoketolase K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22]
D Shewmr4_1037 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D Shewmr4_3307 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D Shewmr4_1039 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D Shewmr4_2031 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Shewmr4_3173 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Shewmr4_2044 6-phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12]
D Shewmr4_2043 2-keto-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D Shewmr4_0776 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Shewmr4_0649 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
C 00040 Pentose and glucuronate interconversions [PATH:she00040]
D Shewmr4_3885 UDP-glucose/GDP-mannose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Shewmr4_1330 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Shewmr4_2608 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Shewmr4_1978 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D Shewmr4_3692 ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Shewmr4_1979 L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4]
D Shewmr4_1977 L-ribulokinase K00853 araB; L-ribulokinase [EC:2.7.1.16]
D Shewmr4_1984 short-chain dehydrogenase/reductase SDR K22185 xylB; D-xylose 1-dehydrogenase [EC:1.1.1.175]
C 00051 Fructose and mannose metabolism [PATH:she00051]
D Shewmr4_0067 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D Shewmr4_2616 N-acetylglucosamine kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D Shewmr4_1329 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Shewmr4_2541 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Shewmr4_1328 mannose-1-phosphate guanylyltransferase (GDP) K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D Shewmr4_0649 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Shewmr4_0776 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Shewmr4_1022 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Shewmr4_0436 HAD-superfamily hydrolase, subfamily IA, variant 3 K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68]
C 00052 Galactose metabolism [PATH:she00052]
D Shewmr4_1985 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D Shewmr4_3409 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D Shewmr4_3408 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D Shewmr4_2609 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Shewmr4_2608 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Shewmr4_2031 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Shewmr4_2534 tagatose-bisphosphate aldolase noncatalytic subunit K16371 gatZ-kbaZ; D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ
D Shewmr4_2133 alpha amylase, catalytic region K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D Shewmr4_1876 alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D Shewmr4_2533 sugar isomerase (SIS) K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-]
C 00053 Ascorbate and aldarate metabolism [PATH:she00053]
D Shewmr4_3885 UDP-glucose/GDP-mannose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Shewmr4_1330 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Shewmr4_3886 UDP-glucuronate 5'-epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D Shewmr4_1978 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D Shewmr4_1983 L-arabinonate dehydratase K13875 araC; L-arabonate dehydrase [EC:4.2.1.25]
C 00500 Starch and sucrose metabolism [PATH:she00500]
D Shewmr4_2133 alpha amylase, catalytic region K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D Shewmr4_1876 alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D Shewmr4_0064 Sucrose phosphorylase K00690 E2.4.1.7; sucrose phosphorylase [EC:2.4.1.7]
D Shewmr4_2608 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Shewmr4_2755 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D Shewmr4_2754 Starch synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D Shewmr4_2758 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D Shewmr4_2756 glycogen/starch/alpha-glucan phosphorylases K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D Shewmr4_1869 glucan 1,4-alpha-glucosidase K01178 SGA1; glucoamylase [EC:3.2.1.3]
D Shewmr4_2759 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D Shewmr4_1763 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D Shewmr4_2757 glycogen debranching enzyme GlgX K01214 ISA; isoamylase [EC:3.2.1.68]
D Shewmr4_2031 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Shewmr4_2968 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Shewmr4_0067 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D Shewmr4_2616 N-acetylglucosamine kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:she00520]
D Shewmr4_2805 chitinase. Glycosyl Hydrolase family 18 K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D Shewmr4_1726 glycoside hydrolase, family 3 domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D Shewmr4_2936 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D Shewmr4_1763 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D Shewmr4_2532 N-acetylglucosamine kinase K00884 NAGK; N-acetylglucosamine kinase [EC:2.7.1.59]
D Shewmr4_2531 N-acetylglucosamine 6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D Shewmr4_2933 N-acetylglucosamine 6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D Shewmr4_2935 ATPase, BadF/BadG/BcrA/BcrD type K18676 gspK; glucosamine kinase [EC:2.7.1.8]
D Shewmr4_0067 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D Shewmr4_2616 N-acetylglucosamine kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D Shewmr4_3920 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Shewmr4_2934 Glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Shewmr4_1021 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D Shewmr4_1333 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D Shewmr4_3923 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D Shewmr4_2882 protein of unknown function UPF0075 K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D Shewmr4_1917 HAD-superfamily hydrolase, subfamily IA, variant 1 K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105]
D Shewmr4_0909 aminoglycoside phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221]
D Shewmr4_0910 Nucleotidyl transferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D Shewmr4_0685 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Shewmr4_0181 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Shewmr4_2648 PTS system, glucose-like IIB subunint K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D Shewmr4_2031 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Shewmr4_2608 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Shewmr4_3885 UDP-glucose/GDP-mannose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Shewmr4_1330 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Shewmr4_3408 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D Shewmr4_2609 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Shewmr4_3886 UDP-glucuronate 5'-epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D Shewmr4_2968 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Shewmr4_1329 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Shewmr4_2541 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Shewmr4_1328 mannose-1-phosphate guanylyltransferase (GDP) K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D Shewmr4_2755 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:she00620]
D Shewmr4_2362 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Shewmr4_0428 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Shewmr4_0429 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Shewmr4_0430 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Shewmr4_1494 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D Shewmr4_1683 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D Shewmr4_2762 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D Shewmr4_1786 Alcohol dehydrogenase, zinc-binding domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D Shewmr4_1491 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D Shewmr4_1490 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Shewmr4_2048 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Shewmr4_0510 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Shewmr4_1728 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D Shewmr4_0249 Aldehyde dehydrogenase (NAD(+)) K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D Shewmr4_0807 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D Shewmr4_2735 FAD linked oxidase domain protein K18930 dld; D-lactate dehydrogenase
D Shewmr4_2107 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D Shewmr4_2161 Hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D Shewmr4_1435 beta-lactamase domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D Shewmr4_3188 Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D Shewmr4_3492 Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D Shewmr4_2986 oxaloacetate decarboxylase alpha subunit K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D Shewmr4_2985 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D Shewmr4_2987 sodium pump decarboxylases, gamma subunit K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma
D Shewmr4_3339 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Shewmr4_2124 fumarase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D Shewmr4_0404 succinate dehydrogenase subunit A K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D Shewmr4_0405 succinate dehydrogenase subunit B K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D Shewmr4_0402 fumarate reductase respiratory complex, transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C
D Shewmr4_0403 fumarate reductase respiratory complex, transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C
D Shewmr4_0808 flavocytochrome c K26318 fccA; fumarate reductase (cytochrome) [EC:1.3.2.4]
D Shewmr4_3710 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D Shewmr4_0152 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D Shewmr4_1592 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Shewmr4_2767 malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D Shewmr4_2597 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Shewmr4_3588 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:she00630]
D Shewmr4_2766 isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1]
D Shewmr4_2362 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Shewmr4_2767 malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D Shewmr4_3339 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Shewmr4_1630 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D Shewmr4_0437 aconitase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D Shewmr4_2597 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Shewmr4_3029 Catalase K03781 katE; catalase [EC:1.11.1.6]
D Shewmr4_2517 Catalase domain protein K03781 katE; catalase [EC:1.11.1.6]
D Shewmr4_0913 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D Shewmr4_2403 HAD-superfamily hydrolase, subfamily IA, variant 1 K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D Shewmr4_3691 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D Shewmr4_0366 alanine-glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D Shewmr4_0305 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Shewmr4_2919 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Shewmr4_1094 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Shewmr4_3329 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D Shewmr4_3331 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Shewmr4_0430 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Shewmr4_3330 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D Shewmr4_2391 6-phosphogluconate dehydrogenase, NAD-binding K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60]
D Shewmr4_2519 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D Shewmr4_2043 2-keto-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D Shewmr4_3720 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Shewmr4_3724 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Shewmr4_0102 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Shewmr4_0825 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Shewmr4_0101 Twin-arginine translocation pathway signal K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Shewmr4_3721 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D Shewmr4_3725 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D Shewmr4_3722 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D Shewmr4_3726 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D Shewmr4_3252 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D Shewmr4_3662 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D Shewmr4_2647 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:she00640]
D Shewmr4_2362 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Shewmr4_2319 AMP-dependent synthetase and ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D Shewmr4_1491 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D Shewmr4_1490 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Shewmr4_2028 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D Shewmr4_2027 Transketolase, central region K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D Shewmr4_2026 catalytic domain of components of various dehydrogenase complexes K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D Shewmr4_0430 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Shewmr4_1494 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D Shewmr4_2154 Alcohol dehydrogenase, zinc-binding domain protein K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D Shewmr4_0018 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D Shewmr4_1408 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D Shewmr4_0510 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Shewmr4_2912 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D Shewmr4_2927 aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D Shewmr4_1637 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Shewmr4_1638 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Shewmr4_2928 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D Shewmr4_2596 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D Shewmr4_3630 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D Shewmr4_3631 aconitase K20455 acnD; 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) [EC:4.2.1.117]
D Shewmr4_3632 methylitaconate delta2-delta3-isomerase K09788 prpF; 2-methylaconitate isomerase [EC:5.3.3.-]
D Shewmr4_0437 aconitase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D Shewmr4_3629 2,3-dimethylmalate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30]
D Shewmr4_0260 iron-containing alcohol dehydrogenase K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-]
C 00650 Butanoate metabolism [PATH:she00650]
D Shewmr4_2597 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Shewmr4_0018 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D Shewmr4_1408 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D Shewmr4_2489 short-chain alcohol dehydrogenase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D Shewmr4_1683 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D Shewmr4_3289 esterase, PHB depolymerase family K05973 phaZ; poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75]
D Shewmr4_2985 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D Shewmr4_1633 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Shewmr4_1634 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Shewmr4_1631 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Shewmr4_1632 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D Shewmr4_0404 succinate dehydrogenase subunit A K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D Shewmr4_0405 succinate dehydrogenase subunit B K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D Shewmr4_0402 fumarate reductase respiratory complex, transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C
D Shewmr4_0403 fumarate reductase respiratory complex, transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C
D Shewmr4_0808 flavocytochrome c K26318 fccA; fumarate reductase (cytochrome) [EC:1.3.2.4]
D Shewmr4_2912 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D Shewmr4_2913 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Shewmr4_1494 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D Shewmr4_2326 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D Shewmr4_2327 3-oxoacid CoA-transferase, A subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D Shewmr4_3291 3-oxoacid CoA-transferase, A subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D Shewmr4_2328 butyryl-CoA:acetate CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D Shewmr4_3292 butyryl-CoA:acetate CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D Shewmr4_3290 short-chain dehydrogenase/reductase SDR K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
D Shewmr4_1750 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Shewmr4_0362 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Shewmr4_1749 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Shewmr4_0363 acetolactate synthase, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:she00660]
D Shewmr4_1750 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Shewmr4_0362 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Shewmr4_1749 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Shewmr4_0363 acetolactate synthase, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D Shewmr4_1637 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Shewmr4_1638 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Shewmr4_3586 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Shewmr4_3585 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Shewmr4_3587 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:she00562]
D Shewmr4_1735 Inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D Shewmr4_2083 3-phytase K01083 E3.1.3.8; 3-phytase [EC:3.1.3.8]
D Shewmr4_2928 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D Shewmr4_2596 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D Shewmr4_1022 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:she00190]
D Shewmr4_2944 NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D Shewmr4_1633 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Shewmr4_1634 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Shewmr4_1631 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Shewmr4_1632 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D Shewmr4_0404 succinate dehydrogenase subunit A K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D Shewmr4_0405 succinate dehydrogenase subunit B K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D Shewmr4_0402 fumarate reductase respiratory complex, transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C
D Shewmr4_0403 fumarate reductase respiratory complex, transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C
D Shewmr4_0602 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D Shewmr4_0603 Cytochrome b/b6, N-terminal domain protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D Shewmr4_0604 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D Shewmr4_3799 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Shewmr4_3827 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Shewmr4_3826 cytochrome C oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV
D Shewmr4_3794 cytochrome c oxidase, subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D Shewmr4_3792 Cytochrome-c oxidase K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D Shewmr4_3791 cytochrome c oxidase, subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D Shewmr4_3793 cytochrome c oxidase assembly protein CtaG/Cox11 K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D Shewmr4_3798 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D Shewmr4_2006 cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D Shewmr4_2007 cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D Shewmr4_2008 Cbb3-type cytochrome oxidase component K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D Shewmr4_2009 cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D Shewmr4_3825 cytochrome c oxidase, subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III
D Shewmr4_3824 Cytochrome-c oxidase K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3]
D Shewmr4_3823 ubiquinol oxidase, subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3]
D Shewmr4_1239 cytochrome bd ubiquinol oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D Shewmr4_1240 cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D Shewmr4_1241 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D Shewmr4_3927 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D Shewmr4_3925 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D Shewmr4_3926 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D Shewmr4_3928 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D Shewmr4_3924 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D Shewmr4_3931 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Shewmr4_3929 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Shewmr4_3930 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Shewmr4_3542 Inorganic diphosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1]
D Shewmr4_2207 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:she00680]
D Shewmr4_1786 Alcohol dehydrogenase, zinc-binding domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D Shewmr4_1787 Carboxylesterase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D Shewmr4_3720 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Shewmr4_3724 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Shewmr4_0102 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Shewmr4_0825 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Shewmr4_0101 Twin-arginine translocation pathway signal K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Shewmr4_3721 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D Shewmr4_3725 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D Shewmr4_3722 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D Shewmr4_3726 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D Shewmr4_3252 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D Shewmr4_3662 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D Shewmr4_1094 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Shewmr4_0366 alanine-glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D Shewmr4_0913 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D Shewmr4_1115 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Shewmr4_3710 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D Shewmr4_3339 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Shewmr4_0776 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Shewmr4_0649 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Shewmr4_1051 trimethylamine-N-oxide reductase TorA K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D Shewmr4_1052 trimethylamine-N-oxide reductase c-type cytochrome TorC K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D Shewmr4_1050 cytoplasmic chaperone TorD family protein K03533 torD; TorA specific chaperone
D Shewmr4_1491 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D Shewmr4_1490 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Shewmr4_2362 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Shewmr4_1592 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Shewmr4_0045 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Shewmr4_0718 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Shewmr4_1920 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Shewmr4_1042 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D Shewmr4_2195 alpha-L-glutamate ligases, RimK family K14940 cofF; gamma-F420-2:alpha-L-glutamate ligase [EC:6.3.2.32]
C 00910 Nitrogen metabolism [PATH:she00910]
D Shewmr4_2225 nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D Shewmr4_2226 respiratory nitrate reductase alpha subunit apoprotein K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D Shewmr4_2227 respiratory nitrate reductase beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D Shewmr4_2229 respiratory nitrate reductase gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D Shewmr4_0704 periplasmic nitrate reductase subunit NapA apoprotein K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D Shewmr4_1842 periplasmic nitrate reductase subunit NapA apoprotein K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D Shewmr4_0701 periplasmic nitrate reductase subunit NapB K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D Shewmr4_1843 periplasmic nitrate reductase subunit NapB K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D Shewmr4_0659 respiratory nitrite reductase (cytochrome; ammonia-forming) precursor K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
D Shewmr4_3089 putative nitric oxide reductase (subunit B) transmembrane protein K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5]
D Shewmr4_2832 hybrid cluster protein K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D Shewmr4_0476 2-nitropropane dioxygenase, NPD K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D Shewmr4_1680 glutamate dehydrogenase (NAD) K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D Shewmr4_0305 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Shewmr4_2919 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Shewmr4_2872 glutamate synthase (NADPH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D Shewmr4_2873 glutamate synthase (NADPH) small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Shewmr4_1854 Carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:she00920]
D Shewmr4_3012 sulfate ABC transporter, periplasmic sulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D Shewmr4_3013 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D Shewmr4_3014 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D Shewmr4_3015 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D Shewmr4_3071 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Shewmr4_3072 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Shewmr4_3069 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D Shewmr4_2617 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D Shewmr4_0170 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D Shewmr4_3078 phosphoadenylylsulfate reductase (thioredoxin) K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D Shewmr4_3080 sulfite reductase (NADPH) alpha subunit K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D Shewmr4_3079 sulfite reductase (NADPH) beta subunit K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D Shewmr4_0633 molydopterin dinucleotide-binding region K08357 ttrA; tetrathionate reductase subunit A
D Shewmr4_0635 4Fe-4S ferredoxin, iron-sulfur binding domain protein K08358 ttrB; tetrathionate reductase subunit B
D Shewmr4_0634 Polysulphide reductase, NrfD K08359 ttrC; tetrathionate reductase subunit C
D Shewmr4_3444 Twin-arginine translocation pathway signal K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5]
D Shewmr4_2924 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D Shewmr4_3902 Rhodanese domain protein K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1]
D Shewmr4_1737 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Shewmr4_1500 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Shewmr4_2598 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D Shewmr4_3439 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D Shewmr4_3677 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D Shewmr4_3678 4Fe-4S ferredoxin, iron-sulfur binding domain protein K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D Shewmr4_2387 acyl-CoA dehydrogenase domain protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
D Shewmr4_1931 acyl-CoA dehydrogenase domain protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:she00061]
D Shewmr4_0510 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Shewmr4_0349 phosphopantetheine-binding K02078 acpP; acyl carrier protein
D Shewmr4_2395 acyl carrier protein K02078 acpP; acyl carrier protein
D Shewmr4_0350 acyl carrier protein, putative K02078 acpP; acyl carrier protein
D Shewmr4_2397 [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Shewmr4_1520 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Shewmr4_2398 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Shewmr4_0338 beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D Shewmr4_1422 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D Shewmr4_2394 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Shewmr4_0335 beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Shewmr4_0336 3-oxoacyl-(acyl-carrier-protein) reductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Shewmr4_2396 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Shewmr4_2591 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Shewmr4_1545 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D Shewmr4_2630 3-hydroxyacyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Shewmr4_2489 short-chain alcohol dehydrogenase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D Shewmr4_0078 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Shewmr4_2177 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Shewmr4_0883 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Shewmr4_3617 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:she00071]
D Shewmr4_2597 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Shewmr4_1407 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Shewmr4_0017 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Shewmr4_0018 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D Shewmr4_1408 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D Shewmr4_2146 acyl-CoA dehydrogenase domain protein K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D Shewmr4_2049 acyl-CoA dehydrogenase domain protein K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D Shewmr4_0078 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Shewmr4_2177 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Shewmr4_0883 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Shewmr4_3617 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Shewmr4_1786 Alcohol dehydrogenase, zinc-binding domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D Shewmr4_1683 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D Shewmr4_2762 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:she00561]
D Shewmr4_2519 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D Shewmr4_3583 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D Shewmr4_3788 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D Shewmr4_2399 phosphate:acyl-[acyl carrier protein] acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D Shewmr4_2903 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Shewmr4_0569 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Shewmr4_2192 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
C 00564 Glycerophospholipid metabolism [PATH:she00564]
D Shewmr4_0048 Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D Shewmr4_0816 FAD dependent oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D Shewmr4_3788 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D Shewmr4_2903 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Shewmr4_0569 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Shewmr4_2192 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D Shewmr4_3074 Phospholipase A(1) K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D Shewmr4_3914 alpha/beta hydrolase fold K01048 pldB; lysophospholipase [EC:3.1.1.5]
D Shewmr4_0586 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D Shewmr4_3310 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D Shewmr4_2636 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D Shewmr4_1935 phospholipase D/Transphosphatidylase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D Shewmr4_2989 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D Shewmr4_0589 phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D Shewmr4_1549 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D Shewmr4_1102 phosphatidylglycerophosphatase K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D Shewmr4_0369 phosphatidylglycerophosphatase K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27]
D Shewmr4_1371 phospholipase D/Transphosphatidylase K06132 clsC; cardiolipin synthase C [EC:2.7.8.-]
C 00565 Ether lipid metabolism [PATH:she00565]
D Shewmr4_3074 Phospholipase A(1) K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00600 Sphingolipid metabolism [PATH:she00600]
D Shewmr4_2936 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism [PATH:she00590]
D Shewmr4_3074 Phospholipase A(1) K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D Shewmr4_2267 peptidase M1, membrane alanine aminopeptidase K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6]
D Shewmr4_2706 peptidase M1, membrane alanine aminopeptidase K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6]
C 00591 Linoleic acid metabolism
D Shewmr4_3074 Phospholipase A(1) K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00592 alpha-Linolenic acid metabolism [PATH:she00592]
D Shewmr4_3074 Phospholipase A(1) K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D Shewmr4_1407 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Shewmr4_0017 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:she01040]
D Shewmr4_0176 Delta-9 acyl-phospholipid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D Shewmr4_1478 Arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D Shewmr4_1619 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:she00230]
D Shewmr4_3235 Nucleoside diphosphate pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D Shewmr4_0169 NUDIX hydrolase K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-]
D Shewmr4_1039 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D Shewmr4_2031 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Shewmr4_3173 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Shewmr4_1430 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Shewmr4_0444 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D Shewmr4_2381 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D Shewmr4_3020 phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D Shewmr4_1238 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D Shewmr4_2380 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D Shewmr4_2976 phosphoribosylaminoimidazole carboxylase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D Shewmr4_2975 phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D Shewmr4_3447 Phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D Shewmr4_1601 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Shewmr4_0445 IMP cyclohydrolase / phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Shewmr4_2255 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D Shewmr4_1223 metallophosphoesterase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D Shewmr4_2264 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D Shewmr4_1120 3'-nucleotidase / 5'-nucleotidase / exopolyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Shewmr4_2382 HAD-superfamily hydrolase, subfamily IIA K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D Shewmr4_0167 HAD-superfamily hydrolase, subfamily IA, variant 3 K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-]
D Shewmr4_2247 inosine-guanosine kinase K00892 gsk; inosine kinase [EC:2.7.1.73]
D Shewmr4_1040 purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D Shewmr4_0262 protein of unknown function DUF1255 K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D Shewmr4_2992 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D Shewmr4_3145 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D Shewmr4_1234 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D Shewmr4_1747 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Shewmr4_0759 protein of unknown function DUF84 K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73]
D Shewmr4_1188 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D Shewmr4_1235 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Shewmr4_0141 CMP/dCMP deaminase, zinc-binding K01487 guaD; guanine deaminase [EC:3.5.4.3]
D Shewmr4_3613 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D Shewmr4_1916 ribonucleoside-diphosphate reductase class Ia alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Shewmr4_1915 ribonucleoside-diphosphate reductase class Ia beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D Shewmr4_2441 ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate reductase class III catalytic subunit K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D Shewmr4_2042 putative deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D Shewmr4_2041 metal dependent phosphohydrolase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D Shewmr4_3615 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D Shewmr4_0412 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D Shewmr4_2208 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D Shewmr4_1111 (p)ppGpp synthetase I, SpoT/RelA K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D Shewmr4_2867 putative adenylate/guanylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D Shewmr4_0389 adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1]
D Shewmr4_3125 putative adenylyl cyclase CyaB K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1]
D Shewmr4_1068 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Shewmr4_3266 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Shewmr4_3912 adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D Shewmr4_2715 conserved hypothetical protein 730 K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D Shewmr4_1524 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D Shewmr4_2249 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D Shewmr4_1113 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D Shewmr4_3233 Calcineurin phosphoesterase C-terminal domain protein K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D Shewmr4_0903 Bis(5'nucleosyl)-tetraphosphatase, ApaH K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D Shewmr4_3069 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D Shewmr4_3071 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Shewmr4_3072 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
C 00240 Pyrimidine metabolism [PATH:she00240]
D Shewmr4_0966 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Shewmr4_0965 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Shewmr4_2892 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D Shewmr4_0860 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D Shewmr4_1681 dihydroorotate oxidase A K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D Shewmr4_3603 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D Shewmr4_1928 orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D Shewmr4_2639 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D Shewmr4_1747 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Shewmr4_1113 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D Shewmr4_3469 maf protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D Shewmr4_2446 protein of unknown function DUF45 K07043 upp; UTP pyrophosphatase [EC:3.6.1.-]
D Shewmr4_1114 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D Shewmr4_1923 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D Shewmr4_1657 uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D Shewmr4_1223 metallophosphoesterase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D Shewmr4_2264 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D Shewmr4_1120 3'-nucleotidase / 5'-nucleotidase / exopolyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Shewmr4_2382 HAD-superfamily hydrolase, subfamily IIA K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D Shewmr4_3606 HAD-superfamily hydrolase, subfamily IA, variant 1 K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-]
D Shewmr4_3505 uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D Shewmr4_0262 protein of unknown function DUF1255 K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D Shewmr4_2379 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D Shewmr4_1524 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D Shewmr4_3306 Purine nucleosidase K01250 rihA; pyrimidine-specific ribonucleoside hydrolase [EC:3.2.2.-]
D Shewmr4_2715 conserved hypothetical protein 730 K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D Shewmr4_2411 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D Shewmr4_2798 Cytosine deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D Shewmr4_2441 ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate reductase class III catalytic subunit K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D Shewmr4_1658 dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D Shewmr4_1916 ribonucleoside-diphosphate reductase class Ia alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Shewmr4_1915 ribonucleoside-diphosphate reductase class Ia beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D Shewmr4_2041 metal dependent phosphohydrolase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D Shewmr4_1661 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D Shewmr4_3599 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Shewmr4_1038 thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D Shewmr4_1357 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D Shewmr4_2861 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:she00250]
D Shewmr4_1921 aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D Shewmr4_2855 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D Shewmr4_1908 L-asparaginases, type I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D Shewmr4_1837 peptidase T2, asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D Shewmr4_2384 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Shewmr4_2040 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D Shewmr4_0366 alanine-glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D Shewmr4_1961 L-alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D Shewmr4_3706 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Shewmr4_3705 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Shewmr4_1068 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Shewmr4_3266 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Shewmr4_1601 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Shewmr4_2892 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D Shewmr4_2912 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D Shewmr4_2913 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Shewmr4_2872 glutamate synthase (NADPH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D Shewmr4_2873 glutamate synthase (NADPH) small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Shewmr4_1680 glutamate dehydrogenase (NAD) K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D Shewmr4_3122 delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D Shewmr4_0305 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Shewmr4_2919 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Shewmr4_0966 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Shewmr4_0965 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Shewmr4_1183 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D Shewmr4_3920 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Shewmr4_2934 Glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Shewmr4_1430 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:she00260]
D Shewmr4_1128 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Shewmr4_0653 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Shewmr4_1138 homoserine dehydrogenase / aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D Shewmr4_3438 aspartate kinase / homoserine dehydrogenase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D Shewmr4_1424 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Shewmr4_1139 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D Shewmr4_1140 L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D Shewmr4_1207 L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D Shewmr4_1094 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Shewmr4_0366 alanine-glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D Shewmr4_0913 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D Shewmr4_2519 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D Shewmr4_0045 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Shewmr4_0718 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Shewmr4_1920 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Shewmr4_1042 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D Shewmr4_3900 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D Shewmr4_3901 L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103]
D Shewmr4_3329 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D Shewmr4_3331 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Shewmr4_0430 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Shewmr4_3330 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D Shewmr4_1935 phospholipase D/Transphosphatidylase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D Shewmr4_2989 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D Shewmr4_1725 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D Shewmr4_0365 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Shewmr4_1457 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Shewmr4_1458 tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:she00270]
D Shewmr4_1737 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Shewmr4_1500 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Shewmr4_2204 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D Shewmr4_0838 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Shewmr4_3299 methionine synthase (B12-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D Shewmr4_0772 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D Shewmr4_1558 S-adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D Shewmr4_3112 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D Shewmr4_2874 methylthioadenosine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D Shewmr4_2992 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D Shewmr4_0090 2,3-diketo-5-methylthio-1-phosphopentane phosphatase K09880 mtnC; enolase-phosphatase E1 [EC:3.1.3.77]
D Shewmr4_2020 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D Shewmr4_2477 methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]
D Shewmr4_1671 putative GAF sensor protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D Shewmr4_3202 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Shewmr4_0934 quorum-sensing autoinducer 2 (AI-2), LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D Shewmr4_2279 conserved hypothetical protein K01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7]
D Shewmr4_1128 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Shewmr4_0653 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Shewmr4_1138 homoserine dehydrogenase / aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D Shewmr4_3438 aspartate kinase / homoserine dehydrogenase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D Shewmr4_1424 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Shewmr4_2598 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D Shewmr4_3439 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D Shewmr4_0928 O-acetylhomoserine/O-acetylserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D Shewmr4_3634 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Shewmr4_2980 glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D Shewmr4_0689 glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D Shewmr4_1921 aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D Shewmr4_2924 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D Shewmr4_3339 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Shewmr4_1725 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D Shewmr4_3011 cysteine synthase B K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D Shewmr4_0718 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Shewmr4_1920 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:she00280]
D Shewmr4_3634 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Shewmr4_1598 leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9]
D Shewmr4_2028 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D Shewmr4_2027 Transketolase, central region K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D Shewmr4_2026 catalytic domain of components of various dehydrogenase complexes K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D Shewmr4_0430 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Shewmr4_2322 isovaleryl-CoA dehydrogenase K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4]
D Shewmr4_0018 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D Shewmr4_1408 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D Shewmr4_1407 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Shewmr4_0017 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Shewmr4_2592 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D Shewmr4_2928 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D Shewmr4_2596 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D Shewmr4_2927 aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D Shewmr4_2912 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D Shewmr4_2325 3-methylcrotonoyl-CoA carboxylase, alpha subunit K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]
D Shewmr4_2323 Propionyl-CoA carboxylase K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]
D Shewmr4_2324 methylglutaconyl-CoA hydratase K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18]
D Shewmr4_2326 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D Shewmr4_2327 3-oxoacid CoA-transferase, A subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D Shewmr4_3291 3-oxoacid CoA-transferase, A subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D Shewmr4_2328 butyryl-CoA:acetate CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D Shewmr4_3292 butyryl-CoA:acetate CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D Shewmr4_2597 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:she00290]
D Shewmr4_0365 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Shewmr4_3586 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Shewmr4_3585 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Shewmr4_3587 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D Shewmr4_1750 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Shewmr4_0362 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Shewmr4_1749 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Shewmr4_0363 acetolactate synthase, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D Shewmr4_0361 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D Shewmr4_0364 dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Shewmr4_3634 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Shewmr4_1598 leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9]
D Shewmr4_2040 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D Shewmr4_3588 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:she00300]
D Shewmr4_1128 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Shewmr4_0653 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Shewmr4_1138 homoserine dehydrogenase / aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D Shewmr4_3438 aspartate kinase / homoserine dehydrogenase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D Shewmr4_1424 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Shewmr4_2340 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Shewmr4_0964 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D Shewmr4_2644 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D Shewmr4_0611 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D Shewmr4_1857 succinyldiaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Shewmr4_0392 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D Shewmr4_0391 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D Shewmr4_3575 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Shewmr4_3574 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:she00310]
D Shewmr4_1636 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D Shewmr4_0430 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Shewmr4_0018 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D Shewmr4_1408 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D Shewmr4_2597 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Shewmr4_2912 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D Shewmr4_2913 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00220 Arginine biosynthesis [PATH:she00220]
D Shewmr4_3707 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D Shewmr4_3706 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Shewmr4_3705 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Shewmr4_1183 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D Shewmr4_0305 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Shewmr4_2919 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Shewmr4_1680 glutamate dehydrogenase (NAD) K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D Shewmr4_1921 aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D Shewmr4_2040 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D Shewmr4_3594 N-acetylglutamate synthase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D Shewmr4_3708 N-acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D Shewmr4_3709 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D Shewmr4_0611 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:she00330]
D Shewmr4_2798 Cytosine deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D Shewmr4_1557 arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D Shewmr4_3288 Porphyromonas-type peptidyl-arginine deiminase K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D Shewmr4_3507 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D Shewmr4_3667 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D Shewmr4_3112 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D Shewmr4_1558 S-adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D Shewmr4_3287 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D Shewmr4_0612 arginine succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109]
D Shewmr4_1584 succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23]
D Shewmr4_0613 succinylglutamic semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71]
D Shewmr4_2029 succinylglutamate desuccinylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96]
D Shewmr4_2914 FAD dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D Shewmr4_2922 FAD dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D Shewmr4_1784 FAD dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D Shewmr4_2926 aldehyde dehydrogenase (acceptor) K09472 puuC; 4-(gamma-glutamylamino)butanal dehydrogenase [EC:1.2.1.99]
D Shewmr4_1192 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D Shewmr4_3122 delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D Shewmr4_0952 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D Shewmr4_3848 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D Shewmr4_3849 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D Shewmr4_0953 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D Shewmr4_0317 prolyl aminopeptidase. Serine peptidase. MEROPS family S33 K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D Shewmr4_1921 aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:she00340]
D Shewmr4_1800 ATP phosphoribosyltransferase (homohexameric) K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D Shewmr4_1793 phosphoribosyl-ATP pyrophosphatase / phosphoribosyl-AMP cyclohydrolase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D Shewmr4_1795 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D Shewmr4_1796 imidazole glycerol phosphate synthase subunit hisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D Shewmr4_1794 imidazole glycerol phosphate synthase subunit hisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D Shewmr4_1797 imidazoleglycerol-phosphate dehydratase / histidinol-phosphate phosphatase K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D Shewmr4_1798 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Shewmr4_1799 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D Shewmr4_0100 histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D Shewmr4_0344 histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D Shewmr4_0099 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D Shewmr4_0097 imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D Shewmr4_3550 Arginase/agmatinase/formiminoglutamase K01479 hutG; formiminoglutamase [EC:3.5.3.8]
C 00350 Tyrosine metabolism [PATH:she00350]
D Shewmr4_1921 aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D Shewmr4_1798 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Shewmr4_2020 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D Shewmr4_2292 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D Shewmr4_2291 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D Shewmr4_2603 maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D Shewmr4_2604 fumarylacetoacetate (FAA) hydrolase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2]
D Shewmr4_1786 Alcohol dehydrogenase, zinc-binding domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D Shewmr4_1683 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D Shewmr4_2762 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D Shewmr4_2913 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00360 Phenylalanine metabolism [PATH:she00360]
D Shewmr4_2607 Phenylalanine 4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D Shewmr4_1921 aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D Shewmr4_1798 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Shewmr4_2020 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D Shewmr4_2292 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D Shewmr4_3379 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D Shewmr4_0311 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D Shewmr4_3287 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00380 Tryptophan metabolism [PATH:she00380]
D Shewmr4_0295 aminotransferase, class V K01556 KYNU; kynureninase [EC:3.7.1.3]
D Shewmr4_1636 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D Shewmr4_0430 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Shewmr4_0018 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D Shewmr4_1408 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D Shewmr4_2597 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Shewmr4_3287 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D Shewmr4_3029 Catalase K03781 katE; catalase [EC:1.11.1.6]
D Shewmr4_2517 Catalase domain protein K03781 katE; catalase [EC:1.11.1.6]
D Shewmr4_3379 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D Shewmr4_0311 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:she00400]
D Shewmr4_1590 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Shewmr4_3358 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Shewmr4_2834 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Shewmr4_3697 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D Shewmr4_0511 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D Shewmr4_0037 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D Shewmr4_3698 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D Shewmr4_1922 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D Shewmr4_1416 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D Shewmr4_1462 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Shewmr4_1461 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D Shewmr4_1460 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D Shewmr4_1459 indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24]
D Shewmr4_1457 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Shewmr4_1458 tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Shewmr4_2833 chorismate mutase / prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D Shewmr4_2828 prephenate dehydratase / chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D Shewmr4_1921 aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D Shewmr4_1798 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Shewmr4_2020 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D Shewmr4_2607 Phenylalanine 4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:she00410]
D Shewmr4_2912 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D Shewmr4_0725 pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D Shewmr4_2927 aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D Shewmr4_0018 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D Shewmr4_1408 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D Shewmr4_2928 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D Shewmr4_2596 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:she00430]
D Shewmr4_2297 gamma-glutamyltransferase 1. Threonine peptidase. MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Shewmr4_3344 gamma-glutamyltransferase 2. Threonine peptidase. MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Shewmr4_1961 L-alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D Shewmr4_1680 glutamate dehydrogenase (NAD) K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D Shewmr4_1490 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Shewmr4_1491 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:she00450]
D Shewmr4_3439 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D Shewmr4_2204 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D Shewmr4_0838 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Shewmr4_3299 methionine synthase (B12-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D Shewmr4_2477 methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]
D Shewmr4_3131 cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D Shewmr4_1959 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D Shewmr4_3071 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Shewmr4_3072 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Shewmr4_0175 selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D Shewmr4_0106 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D Shewmr4_1655 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:she00460]
D Shewmr4_2297 gamma-glutamyltransferase 1. Threonine peptidase. MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Shewmr4_3344 gamma-glutamyltransferase 2. Threonine peptidase. MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Shewmr4_1908 L-asparaginases, type I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D Shewmr4_1837 peptidase T2, asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D Shewmr4_1094 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:she00470]
D Shewmr4_3247 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Shewmr4_2129 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Shewmr4_1183 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D Shewmr4_0179 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D Shewmr4_3572 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Shewmr4_0392 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D Shewmr4_0391 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:she00480]
D Shewmr4_2297 gamma-glutamyltransferase 1. Threonine peptidase. MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Shewmr4_3344 gamma-glutamyltransferase 2. Threonine peptidase. MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Shewmr4_2980 glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D Shewmr4_0689 glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D Shewmr4_0802 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D Shewmr4_0949 peptidase M17, leucyl aminopeptidase domain protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D Shewmr4_2827 PepA aminopeptidase. Metallo peptidase. MEROPS family M17 K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D Shewmr4_0732 PepB aminopeptidase. Metallo peptidase. MEROPS family M17 K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D Shewmr4_1674 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D Shewmr4_3040 aminopeptidase N. Metallo peptidase. MEROPS family M01 K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D Shewmr4_0948 Xaa-His dipeptidase. Metallo peptidase. MEROPS family M20C K01270 pepD; dipeptidase D [EC:3.4.13.-]
D Shewmr4_2301 dipeptidase, putative K01270 pepD; dipeptidase D [EC:3.4.13.-]
D Shewmr4_3840 Glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Shewmr4_3349 Glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Shewmr4_3183 Glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Shewmr4_0005 Glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Shewmr4_1759 Glutathione S-transferase, C-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Shewmr4_3845 NADPH-glutathione reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D Shewmr4_1606 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D Shewmr4_1609 6-phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D Shewmr4_2046 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Shewmr4_1196 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D Shewmr4_2705 Glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D Shewmr4_3814 Redoxin domain protein K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27]
D Shewmr4_3507 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D Shewmr4_3667 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D Shewmr4_3112 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:she00511]
D Shewmr4_2936 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00540 Lipopolysaccharide biosynthesis [PATH:she00540]
D Shewmr4_2629 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D Shewmr4_3565 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D Shewmr4_2631 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D Shewmr4_2500 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D Shewmr4_2628 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D Shewmr4_2421 lipid-A-disaccharide synthase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D Shewmr4_0678 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D Shewmr4_3163 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D Shewmr4_0677 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D Shewmr4_1851 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D Shewmr4_3898 Three-deoxy-D-manno-octulosonic-acid transferase domain protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D Shewmr4_3087 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D Shewmr4_1811 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D Shewmr4_2103 sulfatase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D Shewmr4_3897 lipopolysaccharide kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166]
D Shewmr4_3086 D-alpha,beta-D-heptose 7-phosphate 1-kinase / D-beta-D-heptose 1-phosphate adenylyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D Shewmr4_1522 D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
C 00542 O-Antigen repeat unit biosynthesis [PATH:she00542]
D Shewmr4_1331 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D Shewmr4_1332 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:she00541]
D Shewmr4_2608 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Shewmr4_2609 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Shewmr4_3885 UDP-glucose/GDP-mannose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Shewmr4_1330 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Shewmr4_3886 UDP-glucuronate 5'-epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D Shewmr4_1338 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Shewmr4_1319 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Shewmr4_1318 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Shewmr4_1339 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Shewmr4_2618 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D Shewmr4_3531 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D Shewmr4_1321 DegT/DnrJ/EryC1/StrS aminotransferase K20429 vioA; dTDP-4-amino-4,6-dideoxy-D-glucose transaminase [EC:2.6.1.33]
D Shewmr4_1322 acetyltransferase RfbO, CysE/LacA/LpxA/NodL family K21379 vioB; dTDP-4-amino-4,6-dideoxy-D-glucose acyltransferase [EC:2.3.1.209]
D Shewmr4_1329 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Shewmr4_2541 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Shewmr4_1328 mannose-1-phosphate guanylyltransferase (GDP) K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D Shewmr4_3923 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
C 00550 Peptidoglycan biosynthesis [PATH:she00550]
D Shewmr4_0685 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Shewmr4_0181 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Shewmr4_3569 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D Shewmr4_3572 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Shewmr4_3575 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Shewmr4_2129 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Shewmr4_3574 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D Shewmr4_2637 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D Shewmr4_2900 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Shewmr4_3547 phosphoesterase, PA-phosphatase related K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Shewmr4_3573 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Shewmr4_3570 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D Shewmr4_3077 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D Shewmr4_3704 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Shewmr4_0624 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D Shewmr4_0991 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Shewmr4_3576 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D Shewmr4_0987 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Shewmr4_1932 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:she00552]
D Shewmr4_2900 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Shewmr4_3547 phosphoesterase, PA-phosphatase related K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Shewmr4_1331 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D Shewmr4_1332 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:she00543]
D Shewmr4_1331 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D Shewmr4_1332 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D Shewmr4_3535 glycosyl transferase, family 2 K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
D Shewmr4_1737 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:she00730]
D Shewmr4_1881 thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D Shewmr4_1882 thiamine-phosphate pyrophosphorylase K14153 thiDE; hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase [EC:2.7.1.49 2.7.4.7 2.5.1.3]
D Shewmr4_1883 UBA/THIF-type NAD/FAD binding protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
D Shewmr4_1739 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Shewmr4_2726 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D Shewmr4_3253 biotin and thiamin synthesis associated K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D Shewmr4_1886 thiazole biosynthesis protein ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D Shewmr4_2731 1-Deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D Shewmr4_1885 thiazole biosynthesis family protein K03149 thiG; thiazole synthase [EC:2.8.1.10]
D Shewmr4_1101 thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D Shewmr4_0590 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Shewmr4_0688 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D Shewmr4_3369 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D Shewmr4_3370 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D Shewmr4_2249 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:she00740]
D Shewmr4_2438 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D Shewmr4_1098 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D Shewmr4_1096 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D Shewmr4_0395 HAD-superfamily hydrolase, subfamily IA, variant 1 K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104]
D Shewmr4_0135 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D Shewmr4_1099 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D Shewmr4_1952 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D Shewmr4_1097 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D Shewmr4_2958 riboflavin kinase / FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D Shewmr4_0505 oxidoreductase FAD/NAD(P)-binding domain protein K05368 fre; NAD(P)H-flavin reductase [EC:1.5.1.41]
D Shewmr4_3235 Nucleoside diphosphate pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D Shewmr4_1604 NUDIX hydrolase K12152 nudJ; phosphatase NudJ [EC:3.6.1.-]
D Shewmr4_3146 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:she00750]
D Shewmr4_1559 Pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D Shewmr4_0774 D-erythrose-4-phosphate dehydrogenase K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72]
D Shewmr4_1423 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290]
D Shewmr4_1920 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Shewmr4_0906 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D Shewmr4_2845 pyridoxal phosphate biosynthetic protein PdxJ K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D Shewmr4_1140 L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:she00760]
D Shewmr4_2855 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D Shewmr4_2025 quinolinate synthetase A K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D Shewmr4_0424 nicotinate-nucleotide pyrophosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D Shewmr4_1040 purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D Shewmr4_1223 metallophosphoesterase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D Shewmr4_2264 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D Shewmr4_1120 3'-nucleotidase / 5'-nucleotidase / exopolyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Shewmr4_2382 HAD-superfamily hydrolase, subfamily IIA K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D Shewmr4_0994 nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D Shewmr4_1113 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D Shewmr4_2246 NH(3)-dependent NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D Shewmr4_3712 competence/damage-inducible protein cinA K03742 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D Shewmr4_1642 Silent information regulator protein Sir2 K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D Shewmr4_2733 NAD(+) kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D Shewmr4_3081 NAD(P) transhydrogenase, alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D Shewmr4_3082 NAD(P) transhydrogenase, beta subunit K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D Shewmr4_2913 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:she00770]
D Shewmr4_1750 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Shewmr4_0362 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Shewmr4_1749 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Shewmr4_0363 acetolactate synthase, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D Shewmr4_0361 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D Shewmr4_0364 dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Shewmr4_0726 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D Shewmr4_3158 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D Shewmr4_0725 pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D Shewmr4_0183 pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D Shewmr4_3598 Phosphopantothenoylcysteine decarboxylase / Phosphopantothenate-cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D Shewmr4_1113 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D Shewmr4_3888 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D Shewmr4_0417 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D Shewmr4_2844 holo-acyl-carrier-protein synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D Shewmr4_2664 4'-phosphopantetheinyl transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D Shewmr4_1379 conserved hypothetical protein K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14]
D Shewmr4_3634 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Shewmr4_2520 Pyridoxal-dependent decarboxylase K24264 panP; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:she00780]
D Shewmr4_2357 biotin biosynthesis protein BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D Shewmr4_0338 beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D Shewmr4_1422 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D Shewmr4_2394 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Shewmr4_0335 beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Shewmr4_0336 3-oxoacyl-(acyl-carrier-protein) reductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Shewmr4_2396 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Shewmr4_2591 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Shewmr4_2630 3-hydroxyacyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Shewmr4_3806 bioH protein K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D Shewmr4_2358 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D Shewmr4_2360 aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D Shewmr4_2356 dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D Shewmr4_3255 Radical SAM domain protein K01012 bioB; biotin synthase [EC:2.8.1.6]
D Shewmr4_2359 biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D Shewmr4_0182 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:she00785]
D Shewmr4_0985 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D Shewmr4_0984 lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D Shewmr4_0430 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Shewmr4_0428 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Shewmr4_0429 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Shewmr4_1635 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D Shewmr4_1636 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D Shewmr4_2028 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D Shewmr4_2027 Transketolase, central region K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D Shewmr4_2026 catalytic domain of components of various dehydrogenase complexes K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D Shewmr4_3329 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D Shewmr4_3331 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Shewmr4_3330 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:she00790]
D Shewmr4_3602 GTP cyclohydrolase K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D Shewmr4_0688 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D Shewmr4_3369 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D Shewmr4_3370 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D Shewmr4_3312 Twin-arginine translocation pathway signal K01113 phoD; alkaline phosphatase D [EC:3.1.3.1]
D Shewmr4_2902 dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D Shewmr4_2901 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D Shewmr4_0727 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D Shewmr4_1020 Dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D Shewmr4_0900 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D Shewmr4_1427 FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D Shewmr4_2438 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D Shewmr4_1098 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D Shewmr4_0607 aminodeoxychorismate synthase, glutamine amidotransferase subunit K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D Shewmr4_2125 aminodeoxychorismate synthase, subunit I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D Shewmr4_1659 aminodeoxychorismate lyase apoprotein K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D Shewmr4_1484 dihydroneopterin aldolase K07589 folX; D-erythro-7,8-dihydroneopterin triphosphate epimerase [EC:5.1.99.7]
D Shewmr4_3337 short-chain dehydrogenase/reductase SDR K13938 folM; dihydromonapterin reductase / dihydrofolate reductase [EC:1.5.1.50 1.5.1.3]
D Shewmr4_2606 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D Shewmr4_2607 Phenylalanine 4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D Shewmr4_2058 radical activating enzyme K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D Shewmr4_2059 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D Shewmr4_2661 GTP cyclohydrolase I K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D Shewmr4_3879 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D Shewmr4_0273 GTP cyclohydrolase subunit MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D Shewmr4_0274 GTP cyclohydrolase subunit MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D Shewmr4_0276 molybdopterin synthase subunit MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D Shewmr4_0068 molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D Shewmr4_3878 molybdopterin-guanine dinucleotide biosynthesis protein B K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D Shewmr4_0132 molybdopterin molybdochelatase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D Shewmr4_1438 conserved hypothetical protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
D Shewmr4_3877 molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:she00670]
D Shewmr4_0900 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D Shewmr4_3337 short-chain dehydrogenase/reductase SDR K13938 folM; dihydromonapterin reductase / dihydrofolate reductase [EC:1.5.1.50 1.5.1.3]
D Shewmr4_0561 Formate-tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D Shewmr4_2497 Methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D Shewmr4_1094 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Shewmr4_2381 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D Shewmr4_0445 IMP cyclohydrolase / phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Shewmr4_0028 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D Shewmr4_3331 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Shewmr4_0838 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Shewmr4_2861 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D Shewmr4_2647 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D Shewmr4_3437 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D Shewmr4_3336 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:she00860]
D Shewmr4_1365 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Shewmr4_3170 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D Shewmr4_2893 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Shewmr4_2183 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Shewmr4_3560 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Shewmr4_0388 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D Shewmr4_0387 Uroporphyrinogen III synthase HEM4 K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D Shewmr4_0439 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D Shewmr4_0035 Coproporphyrinogen oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D Shewmr4_3911 oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D Shewmr4_0022 Protoporphyrinogen oxidase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D Shewmr4_0024 Protoporphyrinogen oxidase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D Shewmr4_3066 Protoporphyrinogen oxidase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D Shewmr4_1197 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D Shewmr4_2248 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D Shewmr4_0386 protein of unknown function DUF513, hemX K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D Shewmr4_3073 uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D Shewmr4_1388 siroheme synthase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76]
D Shewmr4_3799 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Shewmr4_3827 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Shewmr4_3798 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D Shewmr4_0846 cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D Shewmr4_0845 adenosylcobyric acid synthase (glutamine-hydrolysing) K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D Shewmr4_2875 cobalamin biosynthesis protein CbiB K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D Shewmr4_0844 adenosylcobinamide kinase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D Shewmr4_0843 cobalamin-5'-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D Shewmr4_0842 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D Shewmr4_0839 Phosphoglycerate mutase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73]
D Shewmr4_0944 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
D Shewmr4_0945 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:she00130]
D Shewmr4_0126 chorismate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D Shewmr4_0474 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D Shewmr4_0506 3-octaprenyl-4hydroxybenzoate decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D Shewmr4_3146 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D Shewmr4_3332 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D Shewmr4_1918 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D Shewmr4_3333 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase / 2-octaprenyl-6-methoxyphenol hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D Shewmr4_3551 demethylmenaquinone methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D Shewmr4_1006 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D Shewmr4_3868 isochorismate synthases K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D Shewmr4_3767 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D Shewmr4_3768 alpha/beta hydrolase fold K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20]
D Shewmr4_3769 O-succinylbenzoate-CoA synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D Shewmr4_3770 O-succinylbenzoate-CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D Shewmr4_3918 1,4-Dihydroxy-2-naphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D Shewmr4_3031 uncharacterized domain 1 K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D Shewmr4_1617 1,4-Dihydroxy-2-naphtoate prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D Shewmr4_0086 NAD(P)H dehydrogenase (quinone) K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D Shewmr4_2292 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:she00900]
D Shewmr4_2731 1-Deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D Shewmr4_2635 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D Shewmr4_1117 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D Shewmr4_3172 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D Shewmr4_1118 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D Shewmr4_1228 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D Shewmr4_2954 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D Shewmr4_2597 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Shewmr4_3146 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D Shewmr4_2730 farnesyl-diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D Shewmr4_0894 Trans-hexaprenyltranstransferase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D Shewmr4_2637 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation [PATH:she00903]
D Shewmr4_0610 Alpha/beta hydrolase fold-3 domain protein K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83]
C 00907 Pinene, camphor and geraniol degradation [PATH:she00907]
D Shewmr4_0018 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D Shewmr4_1408 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D Shewmr4_2326 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D Shewmr4_1407 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Shewmr4_0017 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D Shewmr4_0773 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:she00523]
D Shewmr4_1338 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Shewmr4_1319 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Shewmr4_1318 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Shewmr4_1339 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Shewmr4_2618 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D Shewmr4_3531 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D Shewmr4_3868 isochorismate synthases K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
C 01055 Biosynthesis of vancomycin group antibiotics
D Shewmr4_1318 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:she00332]
D Shewmr4_0952 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D Shewmr4_3848 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D Shewmr4_3849 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D Shewmr4_0953 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:she00261]
D Shewmr4_3071 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Shewmr4_3072 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Shewmr4_1128 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Shewmr4_0653 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Shewmr4_1138 homoserine dehydrogenase / aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D Shewmr4_3438 aspartate kinase / homoserine dehydrogenase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D Shewmr4_1424 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Shewmr4_2340 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Shewmr4_0964 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:she00521]
D Shewmr4_2031 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Shewmr4_1735 Inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D Shewmr4_1338 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Shewmr4_1319 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Shewmr4_1318 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Shewmr4_1339 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Shewmr4_2618 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D Shewmr4_3531 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis [PATH:she00525]
D Shewmr4_1338 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Shewmr4_1319 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Shewmr4_1318 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:she00401]
D Shewmr4_2833 chorismate mutase / prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D Shewmr4_1921 aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D Shewmr4_1798 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Shewmr4_2020 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
D Shewmr4_2941 tryptophan halogenase K14266 prnA; tryptophan 7-halogenase [EC:1.14.19.9]
C 00405 Phenazine biosynthesis
D Shewmr4_1462 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Shewmr4_1461 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D Shewmr4_2397 [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Shewmr4_0336 3-oxoacyl-(acyl-carrier-protein) reductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Shewmr4_2396 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Shewmr4_2591 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D Shewmr4_0349 phosphopantetheine-binding K02078 acpP; acyl carrier protein
D Shewmr4_2395 acyl carrier protein K02078 acpP; acyl carrier protein
D Shewmr4_0350 acyl carrier protein, putative K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:she00999]
D Shewmr4_0772 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D Shewmr4_0037 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:she00362]
D Shewmr4_1407 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Shewmr4_0017 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Shewmr4_3382 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D Shewmr4_0089 Carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D Shewmr4_1408 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D Shewmr4_0018 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D Shewmr4_2985 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D Shewmr4_2597 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation [PATH:she00627]
D Shewmr4_3287 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D Shewmr4_1728 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D Shewmr4_3146 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation [PATH:she00364]
D Shewmr4_0833 Twin-arginine translocation pathway signal K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D Shewmr4_0806 dienelactone hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00625 Chloroalkane and chloroalkene degradation [PATH:she00625]
D Shewmr4_2762 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D Shewmr4_1786 Alcohol dehydrogenase, zinc-binding domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D Shewmr4_1683 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:she00361]
D Shewmr4_0833 Twin-arginine translocation pathway signal K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D Shewmr4_0806 dienelactone hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00623 Toluene degradation [PATH:she00623]
D Shewmr4_0833 Twin-arginine translocation pathway signal K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D Shewmr4_0806 dienelactone hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation [PATH:she00633]
D Shewmr4_3061 dihydropteridine reductase K10679 nfnB; nitroreductase / dihydropteridine reductase [EC:1.-.-.- 1.5.1.34]
D Shewmr4_1158 NADH:flavin oxidoreductase/NADH oxidase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
C 00642 Ethylbenzene degradation
D Shewmr4_1407 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Shewmr4_0017 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation [PATH:she00643]
D Shewmr4_2291 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D Shewmr4_2603 maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D Shewmr4_2604 fumarylacetoacetate (FAA) hydrolase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2]
D Shewmr4_3287 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation [PATH:she00930]
D Shewmr4_0610 Alpha/beta hydrolase fold-3 domain protein K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83]
D Shewmr4_0018 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D Shewmr4_1408 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
D Shewmr4_0309 conserved hypothetical protein K05913 dad; 2,4'-dihydroxyacetophenone dioxygenase [EC:1.13.11.41]
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:she00626]
D Shewmr4_2762 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D Shewmr4_1786 Alcohol dehydrogenase, zinc-binding domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D Shewmr4_1683 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:she03020]
D Shewmr4_0192 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Shewmr4_0193 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Shewmr4_0224 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Shewmr4_3614 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:she03010]
D Shewmr4_1924 SSU ribosomal protein S1P K02945 RP-S1; small subunit ribosomal protein S1
D Shewmr4_2641 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2
D Shewmr4_0205 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3
D Shewmr4_0223 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4
D Shewmr4_0216 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5
D Shewmr4_3260 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6
D Shewmr4_0195 SSU ribosomal protein S7P K02992 RP-S7; small subunit ribosomal protein S7
D Shewmr4_0213 SSU ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8
D Shewmr4_3268 SSU ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9
D Shewmr4_0198 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10
D Shewmr4_0222 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11
D Shewmr4_0194 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12
D Shewmr4_0221 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13
D Shewmr4_0212 SSU ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14
D Shewmr4_1029 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15
D Shewmr4_2838 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16
D Shewmr4_0208 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17
D Shewmr4_3258 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18
D Shewmr4_0203 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19
D Shewmr4_2960 SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20
D Shewmr4_2905 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21
D Shewmr4_0189 LSU ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1
D Shewmr4_0202 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2
D Shewmr4_0199 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3
D Shewmr4_0200 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4
D Shewmr4_0211 LSU ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5
D Shewmr4_0214 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6
D Shewmr4_0191 LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12
D Shewmr4_3257 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9
D Shewmr4_0190 LSU ribosomal protein L10P K02864 RP-L10; large subunit ribosomal protein L10
D Shewmr4_0188 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11
D Shewmr4_3269 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13
D Shewmr4_0209 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14
D Shewmr4_0218 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15
D Shewmr4_0206 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16
D Shewmr4_0225 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17
D Shewmr4_0215 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18
D Shewmr4_2835 LSU ribosomal protein L19P K02884 RP-L19; large subunit ribosomal protein L19
D Shewmr4_1958 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20
D Shewmr4_0895 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21
D Shewmr4_0204 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22
D Shewmr4_0201 LSU ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23
D Shewmr4_0210 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24
D Shewmr4_1834 LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25
D Shewmr4_0896 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27
D Shewmr4_3596 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28
D Shewmr4_0207 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29
D Shewmr4_0217 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30
D Shewmr4_3493 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31
D Shewmr4_2400 LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32
D Shewmr4_3595 LSU ribosomal protein L33P K02913 RP-L33; large subunit ribosomal protein L33
D Shewmr4_3943 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34
D Shewmr4_1957 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35
D Shewmr4_0220 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36
D Shewmr4_R0143 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Shewmr4_R0071 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Shewmr4_R0123 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Shewmr4_R0132 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Shewmr4_R0140 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Shewmr4_R0016 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Shewmr4_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Shewmr4_R0007 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Shewmr4_R0136 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Shewmr4_R0002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Shewmr4_R0142 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Shewmr4_R0135 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Shewmr4_R0010 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Shewmr4_R0139 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Shewmr4_R0131 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Shewmr4_R0017 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Shewmr4_R0074 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Shewmr4_R0122 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Shewmr4_R0003 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Shewmr4_R0134 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Shewmr4_R0141 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Shewmr4_R0138 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Shewmr4_R0018 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Shewmr4_R0011 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Shewmr4_R0075 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Shewmr4_R0130 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Shewmr4_R0121 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:she00970]
D Shewmr4_R0009 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Shewmr4_R0073 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Shewmr4_R0062 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Shewmr4_R0064 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Shewmr4_R0020 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Shewmr4_R0054 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Shewmr4_R0116 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Shewmr4_R0043 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Shewmr4_R0045 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Shewmr4_R0047 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Shewmr4_R0049 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Shewmr4_R0046 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Shewmr4_R0044 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Shewmr4_R0098 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Shewmr4_R0101 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Shewmr4_R0100 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Shewmr4_R0102 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Shewmr4_R0099 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Shewmr4_R0004 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Shewmr4_R0104 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Shewmr4_R0019 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Shewmr4_R0103 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Shewmr4_R0083 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Shewmr4_R0093 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Shewmr4_R0034 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Shewmr4_R0038 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Shewmr4_R0035 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Shewmr4_R0063 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Shewmr4_R0067 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Shewmr4_R0069 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Shewmr4_R0068 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Shewmr4_R0065 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Shewmr4_R0070 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Shewmr4_R0066 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Shewmr4_R0024 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Shewmr4_R0026 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Shewmr4_R0094 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Shewmr4_R0025 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Shewmr4_R0027 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Shewmr4_R0082 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Shewmr4_R0014 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Shewmr4_R0021 tRNA-His K14226 tRNA-His; tRNA His
D Shewmr4_R0115 tRNA-His K14226 tRNA-His; tRNA His
D Shewmr4_R0008 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Shewmr4_R0072 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Shewmr4_R0039 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Shewmr4_R0037 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Shewmr4_R0033 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Shewmr4_R0128 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Shewmr4_R0125 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Shewmr4_R0126 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Shewmr4_R0084 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Shewmr4_R0085 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Shewmr4_R0092 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Shewmr4_R0107 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Shewmr4_R0113 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Shewmr4_R0109 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Shewmr4_R0108 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Shewmr4_R0110 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Shewmr4_R0111 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Shewmr4_R0112 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Shewmr4_R0032 tRNA-Met K14230 tRNA-Met; tRNA Met
D Shewmr4_R0036 tRNA-Met K14230 tRNA-Met; tRNA Met
D Shewmr4_R0120 tRNA-Met K14230 tRNA-Met; tRNA Met
D Shewmr4_R0040 tRNA-Met K14230 tRNA-Met; tRNA Met
D Shewmr4_R0076 tRNA-Met K14230 tRNA-Met; tRNA Met
D Shewmr4_R0077 tRNA-Met K14230 tRNA-Met; tRNA Met
D Shewmr4_R0078 tRNA-Met K14230 tRNA-Met; tRNA Met
D Shewmr4_R0079 tRNA-Met K14230 tRNA-Met; tRNA Met
D Shewmr4_R0051 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Shewmr4_R0124 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Shewmr4_R0053 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Shewmr4_R0022 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Shewmr4_R0023 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Shewmr4_R0117 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Shewmr4_R0105 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Shewmr4_R0080 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Shewmr4_R0091 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Shewmr4_R0081 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Shewmr4_R0042 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Shewmr4_R0048 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Shewmr4_R0086 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Shewmr4_R0133 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Shewmr4_R0015 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Shewmr4_R0012 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Shewmr4_R0050 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Shewmr4_R0052 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Shewmr4_R0031 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D Shewmr4_R0013 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Shewmr4_R0096 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Shewmr4_R0095 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Shewmr4_R0097 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Shewmr4_R0056 tRNA-Val K14237 tRNA-Val; tRNA Val
D Shewmr4_R0057 tRNA-Val K14237 tRNA-Val; tRNA Val
D Shewmr4_R0058 tRNA-Val K14237 tRNA-Val; tRNA Val
D Shewmr4_R0060 tRNA-Val K14237 tRNA-Val; tRNA Val
D Shewmr4_R0059 tRNA-Val K14237 tRNA-Val; tRNA Val
D Shewmr4_R0061 tRNA-Val K14237 tRNA-Val; tRNA Val
D Shewmr4_R0089 tRNA-Val K14237 tRNA-Val; tRNA Val
D Shewmr4_R0090 tRNA-Val K14237 tRNA-Val; tRNA Val
D Shewmr4_R0005 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D Shewmr4_1365 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Shewmr4_2503 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Shewmr4_1127 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Shewmr4_1898 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Shewmr4_2128 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Shewmr4_0009 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D Shewmr4_0008 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D Shewmr4_1955 Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Shewmr4_1967 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Shewmr4_0106 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D Shewmr4_2498 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Shewmr4_1655 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Shewmr4_0028 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D Shewmr4_1130 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Shewmr4_0997 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Shewmr4_2957 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Shewmr4_0827 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Shewmr4_3496 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Shewmr4_1345 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Shewmr4_1229 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Shewmr4_1808 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Shewmr4_1809 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Shewmr4_2880 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Shewmr4_3690 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:she03060]
D Shewmr4_0219 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D Shewmr4_0186 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE
D Shewmr4_1023 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG
D Shewmr4_1384 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D Shewmr4_1015 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D Shewmr4_1016 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D Shewmr4_1385 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF
D Shewmr4_1383 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D Shewmr4_3940 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Shewmr4_3562 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Shewmr4_0047 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB
D Shewmr4_2839 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Shewmr4_R0114 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA
D Shewmr4_3774 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Shewmr4_3554 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D Shewmr4_3555 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB
D Shewmr4_3556 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D Shewmr4_1481 signal peptidase I. Serine peptidase. MEROPS family S26A K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Shewmr4_2849 signal peptidase I. Serine peptidase. MEROPS family S26A K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Shewmr4_2956 signal peptidase II. Aspartic peptidase. MEROPS family A08 K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:she04122]
D Shewmr4_1739 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Shewmr4_2924 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D Shewmr4_0013 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D Shewmr4_2346 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D Shewmr4_1970 DsrH family protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D Shewmr4_1971 DsrE family protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D Shewmr4_1972 DsrE family protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D Shewmr4_1969 DsrC family protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D Shewmr4_1603 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D Shewmr4_0276 molybdopterin synthase subunit MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D Shewmr4_3879 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D Shewmr4_0273 GTP cyclohydrolase subunit MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D Shewmr4_0275 molybdopterin synthase subunit MoaD K03636 moaD; sulfur-carrier protein
D Shewmr4_0131 [molybdopterin synthase] sulfurylase K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D Shewmr4_0274 GTP cyclohydrolase subunit MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D Shewmr4_0068 molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D Shewmr4_2726 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D Shewmr4_1884 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein
D Shewmr4_1883 UBA/THIF-type NAD/FAD binding protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
C 03050 Proteasome
C 03018 RNA degradation [PATH:she03018]
D Shewmr4_2865 NUDIX hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D Shewmr4_2405 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12]
D Shewmr4_0411 DEAD/DEAH box helicase domain protein K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D Shewmr4_1115 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Shewmr4_1031 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D Shewmr4_3129 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Shewmr4_1161 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Shewmr4_0960 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Shewmr4_1369 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Shewmr4_2168 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Shewmr4_2752 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Shewmr4_2809 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Shewmr4_3264 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Shewmr4_3424 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Shewmr4_3590 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Shewmr4_1946 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Shewmr4_0409 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D Shewmr4_0957 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Shewmr4_3397 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Shewmr4_0598 RNA-binding protein Hfq K03666 hfq; host factor-I protein
D Shewmr4_2207 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D Shewmr4_0728 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:she03030]
D Shewmr4_1770 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Shewmr4_2157 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Shewmr4_1516 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Shewmr4_2626 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Shewmr4_2254 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Shewmr4_1662 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Shewmr4_0995 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Shewmr4_1131 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D Shewmr4_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Shewmr4_3248 primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Shewmr4_2907 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D Shewmr4_3419 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Shewmr4_2158 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D Shewmr4_2627 RNase HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Shewmr4_3905 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Shewmr4_1508 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:she03410]
D Shewmr4_2070 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Shewmr4_0893 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D Shewmr4_1180 A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D Shewmr4_3881 Formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D Shewmr4_1367 Transcriptional regulator Ada / DNA-3-methyladenine glycosylase II / DNA-O6-methylguanine--protein-cysteine S-methyltransferase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D Shewmr4_0010 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D Shewmr4_1447 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Shewmr4_3905 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Shewmr4_0797 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Shewmr4_1508 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:she03420]
D Shewmr4_1730 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D Shewmr4_3421 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D Shewmr4_2061 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D Shewmr4_1548 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D Shewmr4_0473 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Shewmr4_3905 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Shewmr4_1508 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:she03430]
D Shewmr4_1124 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Shewmr4_0596 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Shewmr4_2866 DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH
D Shewmr4_0473 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Shewmr4_2410 Exodeoxyribonuclease I subunit C K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D Shewmr4_1233 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D Shewmr4_2729 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D Shewmr4_0797 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Shewmr4_3419 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Shewmr4_2626 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Shewmr4_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Shewmr4_2254 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Shewmr4_0995 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Shewmr4_1662 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Shewmr4_1770 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Shewmr4_2157 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Shewmr4_1516 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Shewmr4_1131 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D Shewmr4_1508 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Shewmr4_3695 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:she03440]
D Shewmr4_0797 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Shewmr4_3419 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Shewmr4_0003 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D Shewmr4_2846 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D Shewmr4_2252 DNA replication and repair protein RecR K06187 recR; recombination protein RecR
D Shewmr4_1125 recA protein K03553 recA; recombination protein RecA
D Shewmr4_3905 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Shewmr4_1901 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D Shewmr4_1902 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D Shewmr4_1900 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D Shewmr4_0354 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Shewmr4_1774 exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D Shewmr4_1775 exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D Shewmr4_1773 exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D Shewmr4_2626 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Shewmr4_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Shewmr4_2254 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Shewmr4_0995 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Shewmr4_1662 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Shewmr4_1770 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Shewmr4_2157 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Shewmr4_1516 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Shewmr4_1131 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D Shewmr4_3495 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D Shewmr4_3259 single-strand binding protein/Primosomal replication protein n K02686 priB; primosomal replication protein N
D Shewmr4_2472 primosomal replication protein N'', putative K04067 priC; primosomal replication protein N''
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:she03250]
D Shewmr4_3153 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D Shewmr4_2760 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:she02010]
D Shewmr4_3012 sulfate ABC transporter, periplasmic sulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D Shewmr4_3013 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D Shewmr4_3014 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D Shewmr4_3015 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D Shewmr4_3874 extracellular solute-binding protein, family 1 K05772 tupA; tungstate transport system substrate-binding protein
D Shewmr4_3875 binding-protein-dependent transport systems inner membrane component K05773 tupB; tungstate transport system permease protein
D Shewmr4_3876 ABC transporter related K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D Shewmr4_0277 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D Shewmr4_3195 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D Shewmr4_0667 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D Shewmr4_3196 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein
D Shewmr4_0278 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein
D Shewmr4_3197 molybdate ABC transporter, ATPase subunit K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D Shewmr4_0279 ABC transporter related K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D Shewmr4_3377 ABC transporter related K05776 modF; molybdate transport system ATP-binding protein
D Shewmr4_3347 extracellular solute-binding protein, family 1 K02012 afuA; iron(III) transport system substrate-binding protein
D Shewmr4_3346 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein
D Shewmr4_3345 ABC transporter related K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D Shewmr4_2918 extracellular solute-binding protein, family 1 K11073 potF; putrescine transport system substrate-binding protein
D Shewmr4_2915 binding-protein-dependent transport systems inner membrane component K11074 potI; putrescine transport system permease protein
D Shewmr4_2916 binding-protein-dependent transport systems inner membrane component K11075 potH; putrescine transport system permease protein
D Shewmr4_2917 spermidine/putrescine ABC transporter ATPase subunit K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D Shewmr4_0682 toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein
D Shewmr4_0681 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D Shewmr4_0680 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D Shewmr4_0683 SpoIIAA family protein K07122 mlaB; phospholipid transport system transporter-binding protein
D Shewmr4_0679 ABC transporter related K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D Shewmr4_1986 periplasmic binding protein/LacI transcriptional regulator K23508 ytfQ; galactofuranose transport system substrate-binding protein
D Shewmr4_1989 inner-membrane translocator K23509 ytfT; galactofuranose transport system permease protein
D Shewmr4_1988 inner-membrane translocator K23509 ytfT; galactofuranose transport system permease protein
D Shewmr4_1987 ABC transporter related K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D Shewmr4_2707 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Shewmr4_2560 binding-protein-dependent transport systems inner membrane component K02037 pstC; phosphate transport system permease protein
D Shewmr4_2559 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein
D Shewmr4_2558 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Shewmr4_3053 extracellular solute-binding protein, family 3 K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D Shewmr4_3054 polar amino acid ABC transporter, inner membrane subunit K17077 artQ; arginine/lysine/histidine transport system permease protein
D Shewmr4_3055 ABC transporter related K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D Shewmr4_2484 extracellular solute-binding protein, family 5 K19226 sapA; cationic peptide transport system substrate-binding protein
D Shewmr4_2485 binding-protein-dependent transport systems inner membrane component K19227 sapB; cationic peptide transport system permease protein
D Shewmr4_2486 binding-protein-dependent transport systems inner membrane component K19228 sapC; cationic peptide transport system permease protein
D Shewmr4_2487 oligopeptide/dipeptide ABC transporter, ATPase subunit K19229 sapD; cationic peptide transport system ATP-binding protein
D Shewmr4_2488 ABC transporter related K19230 sapF; cationic peptide transport system ATP-binding protein
D Shewmr4_0848 periplasmic binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein
D Shewmr4_3865 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein
D Shewmr4_0072 transport protein, putative K09696 natB; sodium transport system permease protein
D Shewmr4_0073 ABC transporter related K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D Shewmr4_1732 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein
D Shewmr4_1734 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein
D Shewmr4_1733 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D Shewmr4_0228 Heme exporter protein D (CcmD) K02196 ccmD; heme exporter protein D
D Shewmr4_0229 heme exporter protein CcmC K02195 ccmC; heme exporter protein C
D Shewmr4_0230 heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D Shewmr4_0231 heme exporter protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D Shewmr4_2826 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein
D Shewmr4_2825 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein
D Shewmr4_0674 ABC transporter related K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D Shewmr4_0497 copper ABC transporter, permease protein K19341 nosY; Cu-processing system permease protein
D Shewmr4_0496 ABC transporter related K19340 nosF; Cu-processing system ATP-binding protein
D Shewmr4_3772 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D Shewmr4_3773 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D Shewmr4_2422 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D Shewmr4_3356 ABC transporter related K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D Shewmr4_1366 ABC transporter related K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D Shewmr4_0383 ABC transporter related K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D Shewmr4_3126 ABC transporter related K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D Shewmr4_3127 ABC transporter related K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
C 02060 Phosphotransferase system (PTS) [PATH:she02060]
D Shewmr4_1764 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D Shewmr4_1765 phosphocarrier, HPr family K02784 ptsH; phosphocarrier protein HPr
D Shewmr4_1763 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D Shewmr4_2648 PTS system, glucose-like IIB subunint K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D Shewmr4_2864 PTSINtr with GAF domain, PtsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D Shewmr4_0669 phosphocarrier, HPr family K08485 ptsO; phosphocarrier protein NPr
D Shewmr4_0671 PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:she03070]
D Shewmr4_3236 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D Shewmr4_0156 general secretion pathway protein D K02453 gspD; general secretion pathway protein D
D Shewmr4_0155 general secretion pathway protein C K02452 gspC; general secretion pathway protein C
D Shewmr4_0158 general secretion pathway protein F K02455 gspF; general secretion pathway protein F
D Shewmr4_0159 general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D Shewmr4_0160 general secretion pathway protein H K02457 gspH; general secretion pathway protein H
D Shewmr4_0161 general secretion pathway protein I K02458 gspI; general secretion pathway protein I
D Shewmr4_0162 general secretion pathway protein J K02459 gspJ; general secretion pathway protein J
D Shewmr4_0163 General secretion pathway protein K K02460 gspK; general secretion pathway protein K
D Shewmr4_0164 general secretion pathway protein L K02461 gspL; general secretion pathway protein L
D Shewmr4_0165 General secretion pathway M protein K02462 gspM; general secretion pathway protein M
D Shewmr4_0157 type II secretion system protein E (GspE) K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D Shewmr4_1384 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D Shewmr4_1015 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D Shewmr4_1016 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D Shewmr4_1385 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF
D Shewmr4_0186 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE
D Shewmr4_1023 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG
D Shewmr4_0219 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D Shewmr4_1383 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D Shewmr4_3940 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Shewmr4_3562 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Shewmr4_3774 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Shewmr4_0047 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB
D Shewmr4_2839 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Shewmr4_3554 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D Shewmr4_3555 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB
D Shewmr4_3556 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:she02020]
D Shewmr4_2708 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Shewmr4_2709 two component transcriptional regulator, winged helix family K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D Shewmr4_0688 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D Shewmr4_3369 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D Shewmr4_3370 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D Shewmr4_3312 Twin-arginine translocation pathway signal K01113 phoD; alkaline phosphatase D [EC:3.1.3.1]
D Shewmr4_2707 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Shewmr4_1579 periplasmic sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D Shewmr4_3818 periplasmic sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D Shewmr4_1580 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP
D Shewmr4_3817 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP
D Shewmr4_3812 periplasmic sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D Shewmr4_3811 two component transcriptional regulator, winged helix family K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D Shewmr4_2468 porin, Gram-negative type K09476 ompF; outer membrane pore protein F
D Shewmr4_0251 periplasmic sensor signal transduction histidine kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D Shewmr4_0252 two component transcriptional regulator, winged helix family K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D Shewmr4_1904 two component transcriptional regulator, winged helix family K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D Shewmr4_0819 two component transcriptional regulator, winged helix family K07661 rstA; two-component system, OmpR family, response regulator RstA
D Shewmr4_0789 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system
D Shewmr4_3782 efflux transporter, RND family, MFP subunit K07798 cusB; membrane fusion protein, copper/silver efflux system
D Shewmr4_3783 heavy metal efflux pump, CzcA family K07787 cusA; copper/silver efflux system protein
D Shewmr4_1828 periplasmic sensor signal transduction histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D Shewmr4_1827 two component transcriptional regulator, winged helix family K07666 qseB; two-component system, OmpR family, response regulator QseB
D Shewmr4_1270 flagellin domain protein K02406 fliC; flagellin
D Shewmr4_1273 flagellin domain protein K02406 fliC; flagellin
D Shewmr4_1299 RNA polymerase, sigma 28 subunit K02405 fliA; RNA polymerase sigma factor FliA
D Shewmr4_2728 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D Shewmr4_0053 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D Shewmr4_1049 multi-sensor hybrid histidine kinase K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3]
D Shewmr4_1047 two component transcriptional regulator, winged helix family K07772 torR; two-component system, OmpR family, torCAD operon response regulator TorR
D Shewmr4_1052 trimethylamine-N-oxide reductase c-type cytochrome TorC K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D Shewmr4_1051 trimethylamine-N-oxide reductase TorA K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D Shewmr4_1050 cytoplasmic chaperone TorD family protein K03533 torD; TorA specific chaperone
D Shewmr4_0651 two component transcriptional regulator, winged helix family K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D Shewmr4_3097 protein of unknown function DUF112, transmembrane K07793 tctA; putative tricarboxylic transport membrane protein
D Shewmr4_3098 putative tricarboxylic transport membrane protein K07794 tctB; putative tricarboxylic transport membrane protein
D Shewmr4_3099 Uncharacterized protein UPF0065 K07795 tctC; putative tricarboxylic transport membrane protein
D Shewmr4_3798 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D Shewmr4_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D Shewmr4_1475 protein of unknown function DUF470 K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
D Shewmr4_0293 anaerobic c4-dicarboxylate antiporter, Dcu family K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D Shewmr4_3188 Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D Shewmr4_0073 ABC transporter related K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D Shewmr4_0072 transport protein, putative K09696 natB; sodium transport system permease protein
D Shewmr4_2224 histidine kinase, dimerisation and phosphoacceptor region K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D Shewmr4_2223 two component transcriptional regulator, LuxR family K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D Shewmr4_0658 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D Shewmr4_0657 two component transcriptional regulator, LuxR family K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D Shewmr4_2226 respiratory nitrate reductase alpha subunit apoprotein K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D Shewmr4_2227 respiratory nitrate reductase beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D Shewmr4_2229 respiratory nitrate reductase gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D Shewmr4_2228 respiratory nitrate reductase chaperone NarJ K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
D Shewmr4_0103 formate dehydrogenase beta subunit K08349 fdnH; formate dehydrogenase-N, beta subunit
D Shewmr4_2682 major facilitator superfamily MFS_1 K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D Shewmr4_1348 lipoprotein, putative K06080 rcsF; RcsF protein
D Shewmr4_1109 Hpt sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D Shewmr4_1547 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D Shewmr4_1129 carbon storage regulator, CsrA / carbon storage regulator, CsrA K03563 csrA; carbon storage regulator
D Shewmr4_1937 beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D Shewmr4_3620 putative signal transduction histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D Shewmr4_3621 two component transcriptional regulator, LuxR family K07693 desR; two-component system, NarL family, response regulator DesR
D Shewmr4_2235 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D Shewmr4_2643 UTP-GlnB uridylyltransferase, GlnD K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D Shewmr4_2945 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D Shewmr4_0258 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D Shewmr4_0257 nitrogen metabolism transcriptional regulator, NtrC, Fis family K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D Shewmr4_0305 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Shewmr4_2919 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Shewmr4_2803 short chain fatty acid transporter K02106 atoE; short-chain fatty acids transporter
D Shewmr4_2597 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Shewmr4_2683 putative phosphoglycerate transport regulatory protein PgtC K08478 pgtC; phosphoglycerate transport regulatory protein PgtC
D Shewmr4_2684 periplasmic sensor signal transduction histidine kinase K08475 pgtB; two-component system, NtrC family, phosphoglycerate transport system sensor histidine kinase PgtB [EC:2.7.13.3]
D Shewmr4_2685 two component, sigma54 specific, transcriptional regulator, Fis family K08476 pgtA; two-component system, NtrC family, phosphoglycerate transport system response regulator PgtA
D Shewmr4_1360 periplasmic sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D Shewmr4_1359 two component, sigma54 specific, transcriptional regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
D Shewmr4_0673 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor
D Shewmr4_0422 methylation site containing protein K02650 pilA; type IV pilus assembly protein PilA
D Shewmr4_1820 Ni/Fe-hydrogenase, b-type cytochrome subunit K03620 hyaC; Ni/Fe-hydrogenase 1 B-type cytochrome subunit
D Shewmr4_1258 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Shewmr4_2090 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Shewmr4_0924 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_2937 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_1243 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_0271 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_0326 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_0632 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_0902 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_1155 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_0824 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_1767 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_1807 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_2091 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_2097 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_3042 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_2909 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_2995 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_3174 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_3323 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_3785 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_3728 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_3752 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_1442 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_3130 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_0583 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor
D Shewmr4_2808 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor
D Shewmr4_1149 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor
D Shewmr4_2092 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Shewmr4_1306 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Shewmr4_1307 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Shewmr4_2093 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Shewmr4_1302 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Shewmr4_0549 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Shewmr4_1300 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Shewmr4_2094 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Shewmr4_1303 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Shewmr4_2088 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Shewmr4_1257 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Shewmr4_1372 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Shewmr4_2272 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Shewmr4_1363 TRAP dicarboxylate transporter, DctP subunit K11688 dctP; C4-dicarboxylate-binding protein DctP
D Shewmr4_1362 Tripartite ATP-independent periplasmic transporter, DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D Shewmr4_1361 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D Shewmr4_0636 periplasmic sensor signal transduction histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3]
D Shewmr4_3516 histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3]
D Shewmr4_0637 two component transcriptional regulator, LuxR family K13041 ttrR; two-component system, LuxR family, response regulator TtrR
D Shewmr4_3517 two component transcriptional regulator, LuxR family K13041 ttrR; two-component system, LuxR family, response regulator TtrR
D Shewmr4_0633 molydopterin dinucleotide-binding region K08357 ttrA; tetrathionate reductase subunit A
D Shewmr4_0635 4Fe-4S ferredoxin, iron-sulfur binding domain protein K08358 ttrB; tetrathionate reductase subunit B
D Shewmr4_0634 Polysulphide reductase, NrfD K08359 ttrC; tetrathionate reductase subunit C
D Shewmr4_1278 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D Shewmr4_1279 PAS/PAC sensor signal transduction histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D Shewmr4_1280 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC
D Shewmr4_0618 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Shewmr4_1183 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D Shewmr4_3530 periplasmic sensor signal transduction histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D Shewmr4_3529 response regulator receiver protein K15012 regA; two-component system, response regulator RegA
D Shewmr4_0602 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D Shewmr4_0603 Cytochrome b/b6, N-terminal domain protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D Shewmr4_0604 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D Shewmr4_2006 cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D Shewmr4_2007 cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D Shewmr4_2008 Cbb3-type cytochrome oxidase component K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D Shewmr4_2009 cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D Shewmr4_1239 cytochrome bd ubiquinol oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D Shewmr4_1240 cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D Shewmr4_1241 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D Shewmr4_3236 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D Shewmr4_1315 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D Shewmr4_2189 protein tyrosine phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D Shewmr4_2095 response regulator receiver protein K20977 hsbR; two-component system, HptB-dependent secretion and biofilm response regulator
D Shewmr4_2096 anti-sigma-factor antagonist K20978 hsbA; HptB-dependent secretion and biofilm anti anti-sigma factor
D Shewmr4_1255 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis [PATH:she04148]
D Shewmr4_3507 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D Shewmr4_3667 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D Shewmr4_0602 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:she02024]
D Shewmr4_0934 quorum-sensing autoinducer 2 (AI-2), LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D Shewmr4_0598 RNA-binding protein Hfq K03666 hfq; host factor-I protein
D Shewmr4_1462 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Shewmr4_1461 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D Shewmr4_1590 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Shewmr4_3358 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Shewmr4_2834 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Shewmr4_1828 periplasmic sensor signal transduction histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D Shewmr4_1827 two component transcriptional regulator, winged helix family K07666 qseB; two-component system, OmpR family, response regulator QseB
D Shewmr4_0053 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D Shewmr4_0384 putative outer membrane adhesin like protein K20276 bapA; large repetitive protein
D Shewmr4_0078 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Shewmr4_2177 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Shewmr4_0883 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Shewmr4_3617 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Shewmr4_0618 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Shewmr4_2438 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D Shewmr4_1096 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D Shewmr4_1941 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D Shewmr4_3940 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Shewmr4_1390 peptidase S8 and S53, subtilisin, kexin, sedolisin K14645 K14645; serine protease [EC:3.4.21.-]
D Shewmr4_0186 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE
D Shewmr4_1023 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG
D Shewmr4_0219 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D Shewmr4_1383 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D Shewmr4_3562 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Shewmr4_3774 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Shewmr4_0047 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB
D Shewmr4_2839 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:she02030]
D Shewmr4_0924 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_2937 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_1243 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_0271 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_0326 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_0632 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_0902 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_1155 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_0824 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_1767 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_1807 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_2091 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_2097 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_3042 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_2909 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_2995 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_3174 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_3323 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_3785 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_3728 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_3752 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_1442 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_3130 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_0583 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor
D Shewmr4_2808 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor
D Shewmr4_1149 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor
D Shewmr4_2093 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Shewmr4_1302 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Shewmr4_2092 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Shewmr4_1306 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Shewmr4_1307 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Shewmr4_0549 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Shewmr4_1300 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Shewmr4_2094 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Shewmr4_1301 chemotaxis phosphatase, CheZ K03414 cheZ; chemotaxis protein CheZ
D Shewmr4_3246 putative chemotaxis protein CheX K03409 cheX; chemotaxis protein CheX
D Shewmr4_1303 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Shewmr4_2088 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Shewmr4_1257 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Shewmr4_1372 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Shewmr4_2272 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Shewmr4_2089 CheD, stimulates methylation of MCP proteins K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D Shewmr4_1258 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Shewmr4_2090 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Shewmr4_1283 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D Shewmr4_1289 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D Shewmr4_1290 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D Shewmr4_2728 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D Shewmr4_2727 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:she02040]
D Shewmr4_1281 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D Shewmr4_1282 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D Shewmr4_1283 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D Shewmr4_1284 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D Shewmr4_1285 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D Shewmr4_1286 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D Shewmr4_1287 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D Shewmr4_0127 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D Shewmr4_1288 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D Shewmr4_1289 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D Shewmr4_1290 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D Shewmr4_1291 flagellar biosynthesis protein, FliO K02418 fliO; flagellar protein FliO/FliZ
D Shewmr4_1292 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D Shewmr4_1293 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D Shewmr4_1294 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D Shewmr4_1296 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D Shewmr4_1295 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D Shewmr4_1256 flagellar basal-body P-ring formation protein FlgA, putative K02386 flgA; flagellar basal body P-ring formation protein FlgA
D Shewmr4_1259 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D Shewmr4_1260 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D Shewmr4_1261 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D Shewmr4_1262 flagellar basal body FlaE domain protein K02390 flgE; flagellar hook protein FlgE
D Shewmr4_1263 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D Shewmr4_1264 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D Shewmr4_1265 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D Shewmr4_1266 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D Shewmr4_1267 flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D Shewmr4_1268 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D Shewmr4_1269 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D Shewmr4_1253 protein of unknown function DUF400 K09860 flgP; outer membrane protein FlgP
D Shewmr4_3265 Sel1 domain protein repeat-containing protein K21217 motX; sodium-type polar flagellar protein MotX
D Shewmr4_2374 OmpA/MotB domain protein K21218 motY; sodium-type flagellar protein MotY
D Shewmr4_1270 flagellin domain protein K02406 fliC; flagellin
D Shewmr4_1273 flagellin domain protein K02406 fliC; flagellin
D Shewmr4_1275 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2
D Shewmr4_1277 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D Shewmr4_2728 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D Shewmr4_2727 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D Shewmr4_1255 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D Shewmr4_1254 FlgN family protein K02399 flgN; flagellar biosynthesis protein FlgN
D Shewmr4_2908 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor
D Shewmr4_1278 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D Shewmr4_0673 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor
D Shewmr4_1280 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC
D Shewmr4_1299 RNA polymerase, sigma 28 subunit K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D Shewmr4_1115 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
D Shewmr4_0838 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:she01501]
D Shewmr4_2468 porin, Gram-negative type K09476 ompF; outer membrane pore protein F
D Shewmr4_3155 major facilitator superfamily MFS_1 K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D Shewmr4_1726 glycoside hydrolase, family 3 domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D Shewmr4_1937 beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D Shewmr4_3837 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Shewmr4_2338 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Shewmr4_1939 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Shewmr4_1084 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Shewmr4_1629 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Shewmr4_3836 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D Shewmr4_2337 acriflavin resistance protein K18138 acrB; multidrug efflux pump
D Shewmr4_1940 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D Shewmr4_1941 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D Shewmr4_3236 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D Shewmr4_3704 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Shewmr4_0991 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Shewmr4_3576 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D Shewmr4_0694 Beta-lactamase K18976 blaOXA-48; beta-lactamase class D OXA-48 [EC:3.5.2.6]
C 01502 Vancomycin resistance [PATH:she01502]
D Shewmr4_2129 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Shewmr4_3247 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Shewmr4_3574 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D Shewmr4_3573 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Shewmr4_3570 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:she01503]
D Shewmr4_1579 periplasmic sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D Shewmr4_3818 periplasmic sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D Shewmr4_1580 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP
D Shewmr4_3817 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP
D Shewmr4_2103 sulfatase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D Shewmr4_2484 extracellular solute-binding protein, family 5 K19226 sapA; cationic peptide transport system substrate-binding protein
D Shewmr4_2485 binding-protein-dependent transport systems inner membrane component K19227 sapB; cationic peptide transport system permease protein
D Shewmr4_2486 binding-protein-dependent transport systems inner membrane component K19228 sapC; cationic peptide transport system permease protein
D Shewmr4_2487 oligopeptide/dipeptide ABC transporter, ATPase subunit K19229 sapD; cationic peptide transport system ATP-binding protein
D Shewmr4_2488 ABC transporter related K19230 sapF; cationic peptide transport system ATP-binding protein
D Shewmr4_0251 periplasmic sensor signal transduction histidine kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D Shewmr4_0252 two component transcriptional regulator, winged helix family K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D Shewmr4_1904 two component transcriptional regulator, winged helix family K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D Shewmr4_0595 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Shewmr4_3642 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D Shewmr4_1512 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D Shewmr4_3153 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D Shewmr4_2760 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D Shewmr4_3837 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Shewmr4_2338 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Shewmr4_1939 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Shewmr4_1084 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Shewmr4_1629 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Shewmr4_3836 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D Shewmr4_2337 acriflavin resistance protein K18138 acrB; multidrug efflux pump
D Shewmr4_1940 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D Shewmr4_3236 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D Shewmr4_2629 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D Shewmr4_1475 protein of unknown function DUF470 K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:she01000]
C 01001 Protein kinases [BR:she01001]
D Shewmr4_0664 protein of unknown function RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D Shewmr4_2718 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D Shewmr4_3395 HipA domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D Shewmr4_2708 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Shewmr4_1579 periplasmic sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D Shewmr4_3818 periplasmic sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D Shewmr4_3812 periplasmic sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D Shewmr4_0251 periplasmic sensor signal transduction histidine kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D Shewmr4_1828 periplasmic sensor signal transduction histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D Shewmr4_1049 multi-sensor hybrid histidine kinase K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3]
D Shewmr4_3007 periplasmic sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D Shewmr4_0818 periplasmic sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D Shewmr4_2224 histidine kinase, dimerisation and phosphoacceptor region K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D Shewmr4_0658 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D Shewmr4_1109 Hpt sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D Shewmr4_3620 putative signal transduction histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D Shewmr4_3096 signal transduction histidine kinase regulating citrate/malate metabolism K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3]
D Shewmr4_0056 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D Shewmr4_2431 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D Shewmr4_0258 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D Shewmr4_2684 periplasmic sensor signal transduction histidine kinase K08475 pgtB; two-component system, NtrC family, phosphoglycerate transport system sensor histidine kinase PgtB [EC:2.7.13.3]
D Shewmr4_1360 periplasmic sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D Shewmr4_3872 periplasmic sensor signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D Shewmr4_2093 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Shewmr4_1302 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Shewmr4_0636 periplasmic sensor signal transduction histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3]
D Shewmr4_3516 histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3]
D Shewmr4_1279 PAS/PAC sensor signal transduction histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D Shewmr4_3530 periplasmic sensor signal transduction histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:she01009]
D Shewmr4_2251 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
D Shewmr4_1042 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:she01002]
D Shewmr4_2956 signal peptidase II. Aspartic peptidase. MEROPS family A08 K03101 lspA; signal peptidase II [EC:3.4.23.36]
D Shewmr4_0418 type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Shewmr4_1819 hydrogenase expression/formation protein K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D Shewmr4_1235 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Shewmr4_2920 peptidase C26 K07010 K07010; putative glutamine amidotransferase
D Shewmr4_0061 NLP/P60 protein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D Shewmr4_1430 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Shewmr4_2872 glutamate synthase (NADPH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D Shewmr4_3920 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Shewmr4_2934 Glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Shewmr4_2384 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Shewmr4_2815 intracellular protease, PfpI family K05520 yhbO; deglycase [EC:3.5.1.124]
D Shewmr4_2199 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
D Shewmr4_3091 ErfK/YbiS/YcfS/YnhG family protein K19235 ybiS; L,D-transpeptidase YbiS
D Shewmr4_2320 Peptidoglycan-binding domain 1 protein K21470 ycbB; L,D-transpeptidase YcbB
D Shewmr4_1831 Peptidoglycan-binding domain 1 protein K21470 ycbB; L,D-transpeptidase YcbB
D Shewmr4_3298 Abortive infection protein K07052 K07052; CAAX protease family protein
D Shewmr4_2267 peptidase M1, membrane alanine aminopeptidase K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6]
D Shewmr4_2706 peptidase M1, membrane alanine aminopeptidase K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6]
D Shewmr4_1674 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D Shewmr4_3040 aminopeptidase N. Metallo peptidase. MEROPS family M01 K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D Shewmr4_2051 Peptidyl-dipeptidase A K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1]
D Shewmr4_3842 oligopeptidase A. Metallo peptidase. MEROPS family M03A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D Shewmr4_1355 peptidyl-dipeptidase Dcp. Metallo peptidase. MEROPS family M03A K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
D Shewmr4_1525 peptidyl-dipeptidase Dcp. Metallo peptidase. MEROPS family M03A K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
D Shewmr4_2302 peptidyl-dipeptidase Dcp. Metallo peptidase. MEROPS family M03A K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
D Shewmr4_2515 vibriolysin. Metallo peptidase. MEROPS family M04 K08604 hap; vibriolysin [EC:3.4.24.25]
D Shewmr4_0125 peptidase M6, immune inhibitor A K09607 ina; immune inhibitor A [EC:3.4.24.-]
D Shewmr4_0499 Endothelin-converting enzyme 1 K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D Shewmr4_3179 Endothelin-converting enzyme 1 K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D Shewmr4_0433 Endothelin-converting enzyme 1 K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D Shewmr4_3417 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D Shewmr4_2981 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D Shewmr4_3742 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D Shewmr4_3094 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D Shewmr4_0802 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D Shewmr4_0949 peptidase M17, leucyl aminopeptidase domain protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D Shewmr4_2827 PepA aminopeptidase. Metallo peptidase. MEROPS family M17 K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D Shewmr4_0732 PepB aminopeptidase. Metallo peptidase. MEROPS family M17 K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D Shewmr4_1857 succinyldiaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Shewmr4_0948 Xaa-His dipeptidase. Metallo peptidase. MEROPS family M20C K01270 pepD; dipeptidase D [EC:3.4.13.-]
D Shewmr4_2301 dipeptidase, putative K01270 pepD; dipeptidase D [EC:3.4.13.-]
D Shewmr4_0288 peptidase M23B K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]
D Shewmr4_2448 peptidase M23B K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D Shewmr4_0884 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D Shewmr4_2642 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D Shewmr4_0019 Xaa-Pro dipeptidase. Metallo peptidase. MEROPS family M24B K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D Shewmr4_2807 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D Shewmr4_2819 Carboxypeptidase Taq K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
D Shewmr4_1019 membrane protease FtsH catalytic subunit K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Shewmr4_2351 HtpX peptidase. Metallo peptidase. MEROPS family M48B K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D Shewmr4_2347 peptidase M48, Ste24p K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D Shewmr4_2634 RseP peptidase. Metallo peptidase. MEROPS family M50B K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D Shewmr4_0443 conserved hypothetical protein K21429 impA; immunomodulating metalloprotease
D Shewmr4_1210 protein of unknown function DUF980 K09933 mtfA; MtfA peptidase
D Shewmr4_3272 DegS. Serine peptidase. MEROPS family S01B K04691 hhoB; serine protease DegS [EC:3.4.21.-]
D Shewmr4_1390 peptidase S8 and S53, subtilisin, kexin, sedolisin K14645 K14645; serine protease [EC:3.4.21.-]
D Shewmr4_2104 Prolyl oligopeptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26]
D Shewmr4_2373 prolyl oligopeptidase. Serine peptidase. MEROPS family S09A K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26]
D Shewmr4_0650 dipeptidyl-peptidase IV. Serine peptidase. MEROPS family S09B K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D Shewmr4_0136 oligopeptidase B. Serine peptidase. MEROPS family S09A K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D Shewmr4_0987 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Shewmr4_0828 murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D Shewmr4_1932 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D Shewmr4_2495 ATP-dependent Clp protease proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D Shewmr4_2493 Lon-A peptidase. Serine peptidase. MEROPS family S16 K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D Shewmr4_1546 conserved hypothetical ATP-dependent protease K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-]
D Shewmr4_3789 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D Shewmr4_1782 putative prophage repressor K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D Shewmr4_1481 signal peptidase I. Serine peptidase. MEROPS family S26A K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Shewmr4_2849 signal peptidase I. Serine peptidase. MEROPS family S26A K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Shewmr4_0317 prolyl aminopeptidase. Serine peptidase. MEROPS family S33 K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D Shewmr4_0043 C-terminal processing peptidase-3. Serine peptidase. MEROPS family S41A K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D Shewmr4_1673 C-terminal processing peptidase-1. Serine peptidase. MEROPS family S41A K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D Shewmr4_1143 peptidase S41 K08676 tri; tricorn protease [EC:3.4.21.-]
D Shewmr4_1909 signal peptide peptidase SppA, 67K type K04773 sppA; protease IV [EC:3.4.21.-]
D Shewmr4_1470 sohB peptidase. Serine peptidase. MEROPS family S49 K04774 sohB; serine protease SohB [EC:3.4.21.-]
D Shewmr4_2352 alpha-aspartyl dipeptidase. Serine peptidase. MEROPS family S51 K05995 pepE; dipeptidase E [EC:3.4.13.21]
D Shewmr4_3903 Rhomboid family protein K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105]
D Shewmr4_3521 HslV component of HslUV peptidase. Threonine peptidase. MEROPS family T01B K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D Shewmr4_1837 peptidase T2, asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D Shewmr4_2297 gamma-glutamyltransferase 1. Threonine peptidase. MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Shewmr4_3344 gamma-glutamyltransferase 2. Threonine peptidase. MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Shewmr4_1064 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D Shewmr4_3138 peptidase U32 K24847 rlhA; 23S rRNA 5-hydroxycytidine C2501 synthase
D Shewmr4_1060 peptidase U32 K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV
D Shewmr4_1061 peptidase U32 K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU
D Shewmr4_3455 microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 K03592 pmbA; PmbA protein
D Shewmr4_3465 microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 K03568 tldD; TldD protein
D Shewmr4_1947 proteinase inhibitor I11, ecotin K08276 eco; ecotin
D Shewmr4_0601 HflC protein K04087 hflC; modulator of FtsH protease HflC
D Shewmr4_0600 HflK protein K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:she01003]
D Shewmr4_2754 Starch synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D Shewmr4_3077 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D Shewmr4_0624 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D Shewmr4_3704 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Shewmr4_1331 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D Shewmr4_1332 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D Shewmr4_1830 glycosyl transferase, family 2 K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-]
D Shewmr4_3535 glycosyl transferase, family 2 K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:she01005]
D Shewmr4_2629 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D Shewmr4_2628 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D Shewmr4_3565 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D Shewmr4_2631 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D Shewmr4_2500 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D Shewmr4_2421 lipid-A-disaccharide synthase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D Shewmr4_3087 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D Shewmr4_1811 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D Shewmr4_3898 Three-deoxy-D-manno-octulosonic-acid transferase domain protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D Shewmr4_2103 sulfatase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D Shewmr4_3897 lipopolysaccharide kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166]
D Shewmr4_1853 DegT/DnrJ/EryC1/StrS aminotransferase K19715 kdnA; 8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase [EC:2.6.1.109]
D Shewmr4_1852 iron-containing alcohol dehydrogenase K19714 kdnB; 3-deoxy-alpha-D-manno-octulosonate 8-oxidase [EC:1.1.3.48]
D Shewmr4_3163 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D Shewmr4_1851 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D Shewmr4_0677 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D Shewmr4_0678 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D Shewmr4_3896 glycosyl transferase, family 9 K12982 opsX; heptosyltransferase I [EC:2.4.-.-]
D Shewmr4_1522 D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D Shewmr4_3086 D-alpha,beta-D-heptose 7-phosphate 1-kinase / D-beta-D-heptose 1-phosphate adenylyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D Shewmr4_1331 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D Shewmr4_1332 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:she01011]
D Shewmr4_0685 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Shewmr4_0181 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Shewmr4_3569 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D Shewmr4_3572 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Shewmr4_3575 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Shewmr4_2129 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Shewmr4_3247 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Shewmr4_0179 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D Shewmr4_3573 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Shewmr4_3570 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D Shewmr4_2900 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Shewmr4_3547 phosphoesterase, PA-phosphatase related K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Shewmr4_2959 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D Shewmr4_3704 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Shewmr4_0624 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D Shewmr4_0991 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Shewmr4_3576 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D Shewmr4_0987 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Shewmr4_1932 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D Shewmr4_0828 murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D Shewmr4_3077 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D Shewmr4_3091 ErfK/YbiS/YcfS/YnhG family protein K19235 ybiS; L,D-transpeptidase YbiS
D Shewmr4_2320 Peptidoglycan-binding domain 1 protein K21470 ycbB; L,D-transpeptidase YcbB
D Shewmr4_1831 Peptidoglycan-binding domain 1 protein K21470 ycbB; L,D-transpeptidase YcbB
D Shewmr4_0061 NLP/P60 protein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D Shewmr4_2448 peptidase M23B K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D Shewmr4_0288 peptidase M23B K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]
D Shewmr4_2199 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
D Shewmr4_2111 Lytic transglycosylase, catalytic K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D Shewmr4_0989 lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D Shewmr4_2269 lytic murein transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D Shewmr4_2171 putative transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D Shewmr4_2162 MLTD_N domain protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D Shewmr4_3414 MLTD_N domain protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D Shewmr4_1237 Lytic transglycosylase, catalytic K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D Shewmr4_1660 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D Shewmr4_2925 rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D Shewmr4_0988 rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D Shewmr4_0595 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Shewmr4_0425 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
D Shewmr4_2898 major outer membrane lipoprotein, putative K06078 lpp; murein lipoprotein
C 01004 Lipid biosynthesis proteins [BR:she01004]
D Shewmr4_2397 [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Shewmr4_1520 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Shewmr4_2398 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Shewmr4_0338 beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D Shewmr4_1422 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D Shewmr4_2394 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Shewmr4_0335 beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Shewmr4_0336 3-oxoacyl-(acyl-carrier-protein) reductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Shewmr4_2396 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Shewmr4_2591 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Shewmr4_1545 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D Shewmr4_2630 3-hydroxyacyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Shewmr4_2489 short-chain alcohol dehydrogenase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D Shewmr4_1478 Arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D Shewmr4_1619 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D Shewmr4_0176 Delta-9 acyl-phospholipid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D Shewmr4_2362 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Shewmr4_2319 AMP-dependent synthetase and ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D Shewmr4_0078 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Shewmr4_2177 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Shewmr4_0883 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Shewmr4_3617 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Shewmr4_2285 AMP-dependent synthetase and ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D Shewmr4_3788 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D Shewmr4_2399 phosphate:acyl-[acyl carrier protein] acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D Shewmr4_2903 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Shewmr4_0569 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:she01006]
D Shewmr4_2730 farnesyl-diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D Shewmr4_0894 Trans-hexaprenyltranstransferase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D Shewmr4_2637 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D Shewmr4_0597 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Shewmr4_1617 1,4-Dihydroxy-2-naphtoate prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D Shewmr4_0474 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D Shewmr4_3799 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Shewmr4_3827 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:she01007]
D Shewmr4_1365 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Shewmr4_2503 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Shewmr4_0729 glutamyl-tRNA synthetase, class Ic K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D Shewmr4_2880 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Shewmr4_3690 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Shewmr4_2498 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Shewmr4_3496 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Shewmr4_1655 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Shewmr4_2957 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Shewmr4_1130 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Shewmr4_0997 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Shewmr4_0827 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Shewmr4_1898 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Shewmr4_2128 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Shewmr4_1229 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Shewmr4_0009 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D Shewmr4_0008 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D Shewmr4_1967 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Shewmr4_1345 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Shewmr4_1955 Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Shewmr4_1127 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Shewmr4_1808 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Shewmr4_1809 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Shewmr4_1921 aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D Shewmr4_2040 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D Shewmr4_2020 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D Shewmr4_1798 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Shewmr4_3900 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D Shewmr4_2358 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D Shewmr4_2927 aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D Shewmr4_0611 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D Shewmr4_2912 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D Shewmr4_2360 aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D Shewmr4_2893 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Shewmr4_3634 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Shewmr4_0366 alanine-glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D Shewmr4_1920 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:she00194]
D Shewmr4_3924 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D Shewmr4_3925 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D Shewmr4_3926 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D Shewmr4_3927 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D Shewmr4_3928 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D Shewmr4_3929 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Shewmr4_3930 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Shewmr4_3931 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Shewmr4_3932 ATP synthase I chain K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:she03000]
D Shewmr4_3202 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Shewmr4_1367 Transcriptional regulator Ada / DNA-3-methyladenine glycosylase II / DNA-O6-methylguanine--protein-cysteine S-methyltransferase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D Shewmr4_2724 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Shewmr4_2452 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Shewmr4_0139 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Shewmr4_0360 transcriptional regulator, LysR family K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D Shewmr4_3300 transcriptional regulator, LysR family K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D Shewmr4_2858 transcriptional regulator, LysR family K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D Shewmr4_2868 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D Shewmr4_2344 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D Shewmr4_1587 transcriptional regulator, LysR family K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D Shewmr4_1106 transcriptional regulator, LysR family K18927 lldR; LysR family transcriptional regulator, L-lactate utilization regulator
D Shewmr4_3106 transcriptional regulator, LysR family K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D Shewmr4_2221 transcriptional regulator, LysR family K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D Shewmr4_2193 transcriptional regulator, LysR family K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D Shewmr4_2536 transcriptional regulator, DeoR family K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D Shewmr4_1838 putative signal transduction protein with CBS domains K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
D Shewmr4_2943 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Shewmr4_0098 transcriptional regulator, histidine utilization repressor, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D Shewmr4_1568 transcriptional regulator, GntR family K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D Shewmr4_0427 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Shewmr4_3600 cell division inhibitor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D Shewmr4_0292 transcriptional regulator, TetR family K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D Shewmr4_0261 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D Shewmr4_1157 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D Shewmr4_2694 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D Shewmr4_1247 transcriptional regulator, TetR family K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D Shewmr4_0177 transcriptional regulator, TetR family K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D Shewmr4_3140 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D Shewmr4_1962 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Shewmr4_3761 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Shewmr4_3435 transcriptional regulator, MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D Shewmr4_0815 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D Shewmr4_1517 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D Shewmr4_2588 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D Shewmr4_0085 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D Shewmr4_0446 transcriptional regulator, MerR family K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D Shewmr4_1164 transcriptional regulator, MerR family K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
D Shewmr4_1641 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Shewmr4_0618 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Shewmr4_2014 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D Shewmr4_1738 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D Shewmr4_0041 transcriptional regulator, BadM/Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D Shewmr4_0532 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Shewmr4_2961 transcriptional regulator, ArsR family K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
D Shewmr4_0023 transcriptional regulator, ArsR family K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
D Shewmr4_0324 transcriptional regulator, XRE family with cupin sensor K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
D Shewmr4_2047 transcriptional regulator, RpiR family K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D Shewmr4_0182 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D Shewmr4_0399 helix-turn-helix, Fis-type K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D Shewmr4_1135 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D Shewmr4_1278 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D Shewmr4_0250 GAF modulated sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D Shewmr4_0887 transcriptional regulator, Fis family / DNA-binding protein Fis K12146 hyfR; hydrogenase-4 transcriptional activator
D Shewmr4_3090 transcriptional regulator, NifA subfamily, Fis family K12266 norR; anaerobic nitric oxide reductase transcription regulator
D Shewmr4_2516 transcriptional regulator, CdaR family K02647 cdaR; carbohydrate diacid regulator
D Shewmr4_3194 transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein
D Shewmr4_3440 methionine repressor, MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D Shewmr4_3122 delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D Shewmr4_0932 transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D Shewmr4_3933 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Shewmr4_1314 transcription antitermination protein nusG K05785 rfaH; transcriptional antiterminator RfaH
D Shewmr4_3340 transcriptional regulator, ArgR family K03402 argR; transcriptional regulator of arginine metabolism
D Shewmr4_2605 transcriptional regulator, TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D Shewmr4_2341 glycine cleavage system transcriptional repressor, putative K03567 gcvR; glycine cleavage system transcriptional repressor
D Shewmr4_2483 DNA-binding protein Fis / transcriptional regulator, Fis family K03974 pspF; psp operon transcriptional activator
D Shewmr4_2480 phage shock protein C, PspC K03973 pspC; phage shock protein C
D Shewmr4_1639 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase
D Shewmr4_2784 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein
D Shewmr4_1689 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein
D Shewmr4_1700 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein
D Shewmr4_2334 negative transcriptional regulator K07734 paiB; transcriptional regulator
D Shewmr4_1199 protein of unknown function DUF179 K07735 algH; putative transcriptional regulator
D Shewmr4_0730 transcriptional regulators, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Shewmr4_1095 Ribonucleotide reductase regulator NrdR-like protein K07738 nrdR; transcriptional repressor NrdR
D Shewmr4_3579 MraZ protein K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:she03021]
D Shewmr4_0224 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Shewmr4_0192 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Shewmr4_0193 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Shewmr4_3614 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Shewmr4_2908 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor
D Shewmr4_1123 RNA polymerase, sigma 28 subunit K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D Shewmr4_2972 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Shewmr4_3175 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Shewmr4_2275 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Shewmr4_1400 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Shewmr4_2854 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Shewmr4_3771 RNA polymerase, sigma 32 subunit, RpoH K03089 rpoH; RNA polymerase sigma-32 factor
D Shewmr4_0673 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor
D Shewmr4_1299 RNA polymerase, sigma 28 subunit K02405 fliA; RNA polymerase sigma factor FliA
D Shewmr4_0575 SNF2-related protein K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
D Shewmr4_1025 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
D Shewmr4_1100 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
D Shewmr4_0187 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
D Shewmr4_0605 Glutathione S-transferase, N-terminal domain protein K03599 sspA; stringent starvation protein A
D Shewmr4_0606 Stringent starvation protein B K03600 sspB; stringent starvation protein B
D Shewmr4_2853 anti sigma-E protein, RseA K03597 rseA; sigma-E factor negative regulatory protein RseA
D Shewmr4_2852 sigma E regulatory protein, MucB/RseB K03598 rseB; sigma-E factor negative regulatory protein RseB
D Shewmr4_2851 positive regulator of sigma(E), RseC/MucC K03803 rseC; sigma-E factor negative regulatory protein RseC
D Shewmr4_0730 transcriptional regulators, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Shewmr4_1013 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D Shewmr4_3810 transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D Shewmr4_0409 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D Shewmr4_3636 transcriptional antiterminator, Rof K19000 rof; Rho-binding antiterminator
C 03019 Messenger RNA biogenesis [BR:she03019]
D Shewmr4_2405 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12]
D Shewmr4_3468 RNAse G K08301 rng; ribonuclease G [EC:3.1.26.-]
D Shewmr4_2848 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Shewmr4_3264 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Shewmr4_0591 Exonuclease, RNase T and DNA polymerase III K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Shewmr4_0411 DEAD/DEAH box helicase domain protein K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D Shewmr4_3129 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Shewmr4_1161 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Shewmr4_0960 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Shewmr4_1369 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Shewmr4_2168 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Shewmr4_2752 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Shewmr4_2809 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Shewmr4_3424 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Shewmr4_3590 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Shewmr4_1946 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Shewmr4_1115 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Shewmr4_1031 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D Shewmr4_0409 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D Shewmr4_0957 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Shewmr4_3397 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Shewmr4_0598 RNA-binding protein Hfq K03666 hfq; host factor-I protein
D Shewmr4_2207 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D Shewmr4_0728 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D Shewmr4_2865 NUDIX hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D Shewmr4_1129 carbon storage regulator, CsrA / carbon storage regulator, CsrA K03563 csrA; carbon storage regulator
D Shewmr4_3491 diguanylate cyclase/phosphodiesterase K18765 csrD; RNase E specificity factor CsrD
D Shewmr4_2165 regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A
D Shewmr4_3549 regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A
D Shewmr4_0570 protein of unknown function DUF1260 K09893 rraB; regulator of ribonuclease activity B
D Shewmr4_0670 Uncharacterized P-loop ATPase protein UPF0042 K06958 rapZ; RNase adapter protein RapZ
D Shewmr4_1839 ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D Shewmr4_0623 ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:she03011]
D Shewmr4_1924 SSU ribosomal protein S1P K02945 RP-S1; small subunit ribosomal protein S1
D Shewmr4_2641 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2
D Shewmr4_0205 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3
D Shewmr4_0223 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4
D Shewmr4_0216 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5
D Shewmr4_3260 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6
D Shewmr4_0195 SSU ribosomal protein S7P K02992 RP-S7; small subunit ribosomal protein S7
D Shewmr4_0213 SSU ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8
D Shewmr4_3268 SSU ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9
D Shewmr4_0198 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10
D Shewmr4_0222 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11
D Shewmr4_0194 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12
D Shewmr4_0221 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13
D Shewmr4_0212 SSU ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14
D Shewmr4_1029 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15
D Shewmr4_2838 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16
D Shewmr4_0208 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17
D Shewmr4_3258 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18
D Shewmr4_0203 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19
D Shewmr4_2960 SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20
D Shewmr4_2905 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21
D Shewmr4_0189 LSU ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1
D Shewmr4_0202 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2
D Shewmr4_0199 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3
D Shewmr4_0200 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4
D Shewmr4_0211 LSU ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5
D Shewmr4_0214 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6
D Shewmr4_3257 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9
D Shewmr4_0190 LSU ribosomal protein L10P K02864 RP-L10; large subunit ribosomal protein L10
D Shewmr4_0188 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11
D Shewmr4_0191 LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12
D Shewmr4_3269 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13
D Shewmr4_0209 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14
D Shewmr4_0218 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15
D Shewmr4_0206 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16
D Shewmr4_0225 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17
D Shewmr4_0215 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18
D Shewmr4_2835 LSU ribosomal protein L19P K02884 RP-L19; large subunit ribosomal protein L19
D Shewmr4_1958 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20
D Shewmr4_0895 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21
D Shewmr4_0204 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22
D Shewmr4_0201 LSU ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23
D Shewmr4_0210 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24
D Shewmr4_0896 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27
D Shewmr4_3596 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28
D Shewmr4_0207 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29
D Shewmr4_0217 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30
D Shewmr4_3493 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31
D Shewmr4_2400 LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32
D Shewmr4_3595 LSU ribosomal protein L33P K02913 RP-L33; large subunit ribosomal protein L33
D Shewmr4_3943 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34
D Shewmr4_1957 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35
D Shewmr4_0220 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36
D Shewmr4_1834 LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25
D Shewmr4_R0003 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Shewmr4_R0134 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Shewmr4_R0141 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Shewmr4_R0138 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Shewmr4_R0018 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Shewmr4_R0011 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Shewmr4_R0075 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Shewmr4_R0130 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Shewmr4_R0121 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Shewmr4_R0143 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Shewmr4_R0071 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Shewmr4_R0123 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Shewmr4_R0132 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Shewmr4_R0140 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Shewmr4_R0016 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Shewmr4_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Shewmr4_R0007 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Shewmr4_R0136 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Shewmr4_R0002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Shewmr4_R0142 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Shewmr4_R0135 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Shewmr4_R0010 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Shewmr4_R0139 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Shewmr4_R0131 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Shewmr4_R0017 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Shewmr4_R0074 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Shewmr4_R0122 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:she03009]
D Shewmr4_2848 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Shewmr4_0664 protein of unknown function RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D Shewmr4_0591 Exonuclease, RNase T and DNA polymerase III K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Shewmr4_2847 GTP-binding protein Era K03595 era; GTPase
D Shewmr4_0897 GTP1/OBG sub domain protein K03979 obgE; GTPase [EC:3.6.5.-]
D Shewmr4_0730 transcriptional regulators, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Shewmr4_1025 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
D Shewmr4_1100 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
D Shewmr4_0187 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
D Shewmr4_2997 Pseudouridine synthase, Rsu K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D Shewmr4_3178 ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D Shewmr4_0917 Pseudouridine synthase, Rsu K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D Shewmr4_0905 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D Shewmr4_0027 sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Shewmr4_2697 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Shewmr4_2131 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Shewmr4_0687 16S rRNA m(2)G 1207 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D Shewmr4_3775 putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D Shewmr4_0690 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D Shewmr4_1665 putative RNA methylase, NOL1/NOP2/sun family K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D Shewmr4_3935 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Shewmr4_3578 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D Shewmr4_3683 Protein of unknown function UPF0011 K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D Shewmr4_3828 protein of unknown function DUF548 K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D Shewmr4_2408 rRNA (guanine-N(1)-)-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D Shewmr4_2899 rRNA (guanine-N(1)-)-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D Shewmr4_3263 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D Shewmr4_1018 ribosomal RNA methyltransferase RrmJ/FtsJ K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D Shewmr4_0128 protein of unknown function DUF890 K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D Shewmr4_0930 rRNA (guanine-N(2)-)-methyltransferase K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D Shewmr4_0992 protein of unknown function DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D Shewmr4_1486 conserved hypothetical protein 95 K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D Shewmr4_0973 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D Shewmr4_1873 conserved hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D Shewmr4_3829 protein of unknown function DUF519 K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D Shewmr4_1540 putative RNA methylase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D Shewmr4_2721 conserved hypothetical protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D Shewmr4_1225 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D Shewmr4_1110 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D Shewmr4_0817 23S rRNA (uracil-5-)-methyltransferase RumB K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D Shewmr4_3139 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D Shewmr4_1377 Pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D Shewmr4_0283 pseudouridine synthase Rlu family protein, TIGR01621 K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D Shewmr4_3537 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D Shewmr4_1467 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D Shewmr4_2404 ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D Shewmr4_2993 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Shewmr4_1605 ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D Shewmr4_0983 SSU ribosomal protein S18P alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D Shewmr4_0546 alpha-L-glutamate ligases, RimK family K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D Shewmr4_1745 SSU ribosomal protein S6P modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D Shewmr4_2837 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D Shewmr4_3451 MiaB-like tRNA modifying enzyme YliG K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D Shewmr4_3321 uncharacterized domain K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D Shewmr4_0401 LSU ribosomal protein L11P methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D Shewmr4_1415 modification methylase, HemK family K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D Shewmr4_1600 Cupin 4 family protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D Shewmr4_2405 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12]
D Shewmr4_3468 RNAse G K08301 rng; ribonuclease G [EC:3.1.26.-]
D Shewmr4_1198 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D Shewmr4_0745 DEAD/DEAH box helicase domain protein K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
D Shewmr4_3424 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Shewmr4_0790 DEAD/DEAH box helicase domain protein K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
D Shewmr4_0590 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Shewmr4_1232 small GTP-binding protein K03977 engA; GTPase
D Shewmr4_2186 GTP-binding K14540 rbgA; ribosome biogenesis GTPase A
D Shewmr4_0599 GTP-binding protein, HSR1-related K03665 hflX; GTPase
D Shewmr4_0034 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Shewmr4_3615 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D Shewmr4_1027 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D Shewmr4_1024 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP
D Shewmr4_2454 RNA-binding S4 domain protein K14761 rlbA; ribosome-associated protein
D Shewmr4_0993 iojap-like protein K09710 ybeB; ribosome-associated protein
D Shewmr4_1002 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor
D Shewmr4_1017 protein of unknown function UPF0044 K07574 yhbY; RNA-binding protein
D Shewmr4_2439 conserved hypothetical protein K14762 yibL; ribosome-associated protein
D Shewmr4_3456 protein of unknown function DUF615 K09889 yjgA; ribosome-associated protein
D Shewmr4_1544 ribosome modulation factor K03812 rmf; ribosome modulation factor
D Shewmr4_0672 sigma 54 modulation protein / SSU ribosomal protein S30P K05808 hpf; ribosome hibernation promoting factor
D Shewmr4_1132 sigma 54 modulation protein / SSU ribosomal protein S30P K05809 raiA; ribosome-associated inhibitor A
D Shewmr4_1150 sigma 54 modulation protein / SSU ribosomal protein S30P K05809 raiA; ribosome-associated inhibitor A
D Shewmr4_1008 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
D Shewmr4_2401 protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:she03016]
D Shewmr4_3784 ribonuclease T2 K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
D Shewmr4_2897 metal dependent phosphohydrolase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D Shewmr4_1365 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Shewmr4_1345 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Shewmr4_2957 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Shewmr4_0997 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Shewmr4_1655 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Shewmr4_2503 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Shewmr4_3496 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Shewmr4_0827 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Shewmr4_1898 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Shewmr4_1127 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Shewmr4_2128 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Shewmr4_1955 Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Shewmr4_1967 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Shewmr4_2498 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Shewmr4_1130 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Shewmr4_1229 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Shewmr4_1808 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Shewmr4_1809 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Shewmr4_2880 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Shewmr4_3690 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Shewmr4_0319 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D Shewmr4_2314 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D Shewmr4_1181 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D Shewmr4_1347 protein of unknown function UPF0066 K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D Shewmr4_1426 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D Shewmr4_1028 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D Shewmr4_1119 Pseudouridylate synthase K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D Shewmr4_1739 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Shewmr4_0034 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Shewmr4_0597 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Shewmr4_3939 tRNA modification GTPase trmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D Shewmr4_3936 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D Shewmr4_0175 selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D Shewmr4_2617 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D Shewmr4_0170 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D Shewmr4_3942 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D Shewmr4_R0137 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA
D Shewmr4_2375 RNAse T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D Shewmr4_3604 RNAse PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D Shewmr4_2176 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D Shewmr4_0620 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D Shewmr4_1093 ABC transporter related K06020 ettA; energy-dependent translational throttle protein EttA
D Shewmr4_0009 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D Shewmr4_0008 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D Shewmr4_0729 glutamyl-tRNA synthetase, class Ic K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D Shewmr4_0955 ybaK/ebsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D Shewmr4_1236 CMP/dCMP deaminase, zinc-binding K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D Shewmr4_3243 TIM-barrel protein, yjbN family K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D Shewmr4_0400 putative TIM-barrel protein, nifR3 family K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D Shewmr4_2261 dihydrouridine synthase, DuS K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
D Shewmr4_1004 tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D Shewmr4_1896 putative methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D Shewmr4_1895 putative methyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D Shewmr4_0558 Methyltransferase type 11 K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
D Shewmr4_0178 tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D Shewmr4_2836 tRNA (Guanine37-N(1)-) methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D Shewmr4_1736 RNA methyltransferase, TrmH family, group 1 K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D Shewmr4_1877 conserved hypothetical protein K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D Shewmr4_3736 RNA methyltransferase, TrmH family, group 2 K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D Shewmr4_0793 methyltransferase small K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D Shewmr4_2650 tRNA pseudouridine synthase C K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D Shewmr4_3139 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D Shewmr4_1377 Pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D Shewmr4_0283 pseudouridine synthase Rlu family protein, TIGR01621 K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D Shewmr4_3537 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D Shewmr4_1603 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D Shewmr4_2016 PP-loop domain protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D Shewmr4_0013 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D Shewmr4_2346 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D Shewmr4_1970 DsrH family protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D Shewmr4_1971 DsrE family protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D Shewmr4_1972 DsrE family protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D Shewmr4_1969 DsrC family protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D Shewmr4_1741 iron-sulfur cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein
D Shewmr4_0717 glycine cleavage T protein (aminomethyl transferase) K06980 ygfZ; tRNA-modifying protein YgfZ
D Shewmr4_2501 tRNA--hydroxylase K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69]
D Shewmr4_1421 FAD dependent oxidoreductase K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D Shewmr4_1381 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D Shewmr4_2059 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D Shewmr4_2058 radical activating enzyme K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D Shewmr4_2661 GTP cyclohydrolase I K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D Shewmr4_3193 putative iron-sulfur cluster binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D Shewmr4_0174 tRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D Shewmr4_1382 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D Shewmr4_2726 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D Shewmr4_2625 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D Shewmr4_2182 peptidase M22, glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D Shewmr4_2904 O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D Shewmr4_0594 protein of unknown function UPF0079 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D Shewmr4_3226 UBA/THIF-type NAD/FAD binding protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D Shewmr4_3264 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Shewmr4_1031 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:she03012]
D Shewmr4_1200 translation initiation factor 1 (eIF-1/SUI1) K03113 EIF1; translation initiation factor 1
D Shewmr4_1026 bacterial translation initiation factor 2 (bIF-2) K02519 infB; translation initiation factor IF-2
D Shewmr4_1956 bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3
D Shewmr4_0741 ABC transporter related K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D Shewmr4_2640 translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts
D Shewmr4_0185 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D Shewmr4_0197 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D Shewmr4_0698 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G
D Shewmr4_0196 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G
D Shewmr4_0107 selenocysteine-specific translation elongation factor SelB K03833 selB; selenocysteine-specific elongation factor
D Shewmr4_3169 bacterial peptide chain release factor 1 (bRF-1) K02835 prfA; peptide chain release factor 1
D Shewmr4_2638 ribosome recycling factor K02838 frr; ribosome recycling factor
D Shewmr4_3168 modification methylase, HemK family K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D Shewmr4_1007 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D Shewmr4_1649 bacterial translation initiation factor 1 (bIF-1) K02518 infA; translation initiation factor IF-1
D Shewmr4_2038 translation elongation factor P (EF-P) K02356 efp; elongation factor P
D Shewmr4_0826 bacterial peptide chain release factor 2 (bRF-2) K02836 prfB; peptide chain release factor 2
D Shewmr4_1033 bacterial peptide chain release factor 3 (bRF-3) K02837 prfC; peptide chain release factor 3
D Shewmr4_3452 protein of unknown function DUF331 K09890 arfA; alternative ribosome-rescue factor
D Shewmr4_0512 Class I peptide chain release factor K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:she03110]
D Shewmr4_1648 ATP-dependent Clp protease, ATP-binding subunit clpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D Shewmr4_2991 ATPase AAA-2 domain protein K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D Shewmr4_2494 ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D Shewmr4_3522 heat shock protein HslVU, ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D Shewmr4_2251 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
D Shewmr4_0957 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Shewmr4_1743 Fe-S protein assembly chaperone HscA K04044 hscA; molecular chaperone HscA
D Shewmr4_2206 conserved hypothetical protein K04046 yegD; hypothetical chaperone protein
D Shewmr4_3397 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Shewmr4_0958 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D Shewmr4_0911 heat shock protein DnaJ domain protein K05801 djlA; DnaJ like chaperone protein
D Shewmr4_1742 co-chaperone Hsc20 K04082 hscB; molecular chaperone HscB
D Shewmr4_0153 Hsp33 protein K04083 hslO; molecular chaperone Hsp33
D Shewmr4_2732 GrpE protein K03687 GRPE; molecular chaperone GrpE
D Shewmr4_1748 heat shock protein Hsp20 K04080 ibpA; molecular chaperone IbpA
D Shewmr4_0154 RNA-binding S4 domain protein K04762 hslR; ribosome-associated heat shock protein Hsp15
D Shewmr4_3398 chaperonin Cpn10 K04078 groES; chaperonin GroES
D Shewmr4_1019 membrane protease FtsH catalytic subunit K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Shewmr4_3931 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Shewmr4_0047 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB
D Shewmr4_0253 protein of unknown function, Spy-related K06006 cpxP; periplasmic protein CpxP/Spy
D Shewmr4_3239 protein of unknown function DUF461 K09796 pccA; periplasmic copper chaperone A
D Shewmr4_1812 hydrogenase nickel insertion protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D Shewmr4_1816 hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D Shewmr4_1050 cytoplasmic chaperone TorD family protein K03533 torD; TorA specific chaperone
D Shewmr4_3679 cytoplasmic chaperone TorD family protein K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D Shewmr4_3661 cytoplasmic chaperone TorD family protein K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D Shewmr4_1390 peptidase S8 and S53, subtilisin, kexin, sedolisin K14645 K14645; serine protease [EC:3.4.21.-]
D Shewmr4_2936 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D Shewmr4_3153 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D Shewmr4_2760 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D Shewmr4_2499 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D Shewmr4_2169 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D Shewmr4_2491 PpiC-type peptidyl-prolyl cis-trans isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D Shewmr4_3034 peptidylprolyl isomerase, FKBP-type K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D Shewmr4_0490 FKBP-type peptidyl-prolyl isomerase domain protein K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D Shewmr4_0963 peptidylprolyl isomerase, FKBP-type K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D Shewmr4_2955 peptidylprolyl isomerase, FKBP-type K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8]
D Shewmr4_2268 peptidylprolyl isomerase, FKBP-type K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D Shewmr4_1137 peptidylprolyl isomerase, FKBP-type K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D Shewmr4_0625 PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D Shewmr4_2456 PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D Shewmr4_0907 PpiC-type peptidyl-prolyl cis-trans isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D Shewmr4_0410 thioredoxin K03671 TXN; thioredoxin
D Shewmr4_3375 Thioredoxin domain K03671 TXN; thioredoxin
D Shewmr4_0456 thioredoxin K03672 trxC; thioredoxin 2 [EC:1.8.1.8]
D Shewmr4_2250 Thioredoxin domain K05838 ybbN; putative thioredoxin
D Shewmr4_2364 Glutaredoxin, GrxA family K03674 grxA; glutaredoxin 1
D Shewmr4_1573 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin
D Shewmr4_3642 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D Shewmr4_1512 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D Shewmr4_1566 Disulphide bond formation protein DsbB K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D Shewmr4_0796 thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D Shewmr4_3406 Protein-disulfide reductase K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
D Shewmr4_0235 periplasmic protein thiol--disulphide oxidoreductase DsbE K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:she04131]
D Shewmr4_1747 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Shewmr4_2816 band 7 protein K07192 FLOT; flotillin
D Shewmr4_2021 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Shewmr4_2023 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Shewmr4_2048 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Shewmr4_2251 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system [BR:she04121]
C 03051 Proteasome [BR:she03051]
D Shewmr4_2251 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:she03032]
D Shewmr4_2158 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D Shewmr4_3202 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Shewmr4_1550 histone family protein DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
D Shewmr4_2492 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Shewmr4_0548 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Shewmr4_1810 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D Shewmr4_1925 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D Shewmr4_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D Shewmr4_3248 primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Shewmr4_2907 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D Shewmr4_3419 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Shewmr4_2626 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Shewmr4_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Shewmr4_1131 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D Shewmr4_0995 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Shewmr4_1662 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Shewmr4_1770 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Shewmr4_2157 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Shewmr4_1516 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Shewmr4_2254 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Shewmr4_2627 RNase HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Shewmr4_3905 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Shewmr4_1508 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Shewmr4_3695 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D Shewmr4_2032 SeqA family protein K03645 seqA; negative modulator of initiation of replication
D Shewmr4_1576 regulatory inactivation of DnaA Hda protein K10763 hda; DnaA-homolog protein
D Shewmr4_1919 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Shewmr4_0004 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Shewmr4_3229 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D Shewmr4_3231 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D Shewmr4_1585 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D Shewmr4_1433 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:she03036]
D Shewmr4_3202 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Shewmr4_2848 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Shewmr4_2816 band 7 protein K07192 FLOT; flotillin
D Shewmr4_1351 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
D Shewmr4_1550 histone family protein DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
D Shewmr4_2492 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Shewmr4_0548 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Shewmr4_1810 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D Shewmr4_1925 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D Shewmr4_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D Shewmr4_3686 phosphoheptose isomerase K12961 diaA; DnaA initiator-associating protein
D Shewmr4_0981 Ferritin, Dps family protein K04047 dps; starvation-inducible DNA-binding protein
D Shewmr4_0399 helix-turn-helix, Fis-type K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D Shewmr4_0598 RNA-binding protein Hfq K03666 hfq; host factor-I protein
D Shewmr4_2344 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D Shewmr4_1962 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Shewmr4_3761 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Shewmr4_2217 37kDa nucleoid-associated protein K06899 ndpA; nucleoid-associated protein
D Shewmr4_1506 chromosome segregation protein SMC K03529 smc; chromosome segregation protein
D Shewmr4_1465 condensin subunit ScpA K05896 scpA; segregation and condensation protein A
D Shewmr4_1466 condensin subunit ScpB K06024 scpB; segregation and condensation protein B
D Shewmr4_3567 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D Shewmr4_1116 cell division protein FtsB K05589 ftsB; cell division protein FtsB
D Shewmr4_3773 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D Shewmr4_3576 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D Shewmr4_1963 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D Shewmr4_3577 cell division protein FtsL K03586 ftsL; cell division protein FtsL
D Shewmr4_3568 Polypeptide-transport-associated domain protein, FtsQ-type K03589 ftsQ; cell division protein FtsQ
D Shewmr4_3571 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D Shewmr4_3772 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D Shewmr4_3566 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Shewmr4_3745 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Shewmr4_1507 cell division protein ZipA K03528 zipA; cell division protein ZipA
D Shewmr4_3335 cell division protein ZapA K09888 zapA; cell division protein ZapA
D Shewmr4_3640 protein of unknown function DUF904 K09892 zapB; cell division protein ZapB
D Shewmr4_1682 protein of unknown function DUF1379 K18657 zapC; cell division protein ZapC
D Shewmr4_0416 protein of unknown function DUF1342 K18778 zapD; cell division protein ZapD
D Shewmr4_3270 AFG1-family ATPase K06916 zapE; cell division protein ZapE
D Shewmr4_3102 AFG1-family ATPase K06916 zapE; cell division protein ZapE
D Shewmr4_0595 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Shewmr4_3837 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Shewmr4_2338 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Shewmr4_1939 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Shewmr4_1084 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Shewmr4_1629 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Shewmr4_2173 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D Shewmr4_2174 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D Shewmr4_2175 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D Shewmr4_3790 conserved hypothetical protein K13053 sulA; cell division inhibitor SulA
D Shewmr4_3600 cell division inhibitor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D Shewmr4_2032 SeqA family protein K03645 seqA; negative modulator of initiation of replication
D Shewmr4_3472 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D Shewmr4_3471 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D Shewmr4_3470 Rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D Shewmr4_0990 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D Shewmr4_3934 chromosome segregation ATPase K03496 parA; chromosome partitioning protein
D Shewmr4_2428 conserved hypothetical protein K03496 parA; chromosome partitioning protein
D Shewmr4_1305 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein
D Shewmr4_1214 conserved hypothetical protein K03496 parA; chromosome partitioning protein
D Shewmr4_3933 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Shewmr4_3229 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D Shewmr4_3231 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D Shewmr4_3936 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D Shewmr4_3935 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Shewmr4_0394 tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D Shewmr4_0795 tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D Shewmr4_3218 phage integrase family protein K04763 xerD; integrase/recombinase XerD
D Shewmr4_2782 phage integrase family protein K04763 xerD; integrase/recombinase XerD
D Shewmr4_1656 ATP-binding protein, Mrp/Nbp35 family K03593 mrp; ATP-binding protein involved in chromosome partitioning
D Shewmr4_3906 cell division checkpoint GTPase YihA K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:she03400]
D Shewmr4_1368 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Shewmr4_1165 Deoxyribodipyrimidine photo-lyase type I K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D Shewmr4_0893 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D Shewmr4_1180 A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D Shewmr4_2070 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Shewmr4_0414 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Shewmr4_0467 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Shewmr4_3599 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Shewmr4_3526 deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
D Shewmr4_1367 Transcriptional regulator Ada / DNA-3-methyladenine glycosylase II / DNA-O6-methylguanine--protein-cysteine S-methyltransferase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D Shewmr4_0010 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D Shewmr4_3881 Formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D Shewmr4_1447 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Shewmr4_0797 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Shewmr4_1508 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Shewmr4_3905 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Shewmr4_3421 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D Shewmr4_2061 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D Shewmr4_1548 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D Shewmr4_0473 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Shewmr4_0192 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Shewmr4_0193 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Shewmr4_0224 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Shewmr4_3614 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Shewmr4_1730 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D Shewmr4_1124 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Shewmr4_0596 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Shewmr4_2866 DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH
D Shewmr4_2410 Exodeoxyribonuclease I subunit C K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D Shewmr4_1233 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D Shewmr4_2729 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D Shewmr4_2626 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Shewmr4_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Shewmr4_1131 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D Shewmr4_0995 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Shewmr4_1662 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Shewmr4_1770 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Shewmr4_2157 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Shewmr4_1516 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Shewmr4_2254 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Shewmr4_3419 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Shewmr4_3695 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D Shewmr4_1774 exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D Shewmr4_1775 exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D Shewmr4_1773 exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D Shewmr4_1125 recA protein K03553 recA; recombination protein RecA
D Shewmr4_1901 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D Shewmr4_1902 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D Shewmr4_1900 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D Shewmr4_3495 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D Shewmr4_3259 single-strand binding protein/Primosomal replication protein n K02686 priB; primosomal replication protein N
D Shewmr4_2472 primosomal replication protein N'', putative K04067 priC; primosomal replication protein N''
D Shewmr4_2449 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50
D Shewmr4_2450 Exodeoxyribonuclease I subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
D Shewmr4_1045 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D Shewmr4_0003 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D Shewmr4_0354 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Shewmr4_2846 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D Shewmr4_2252 DNA replication and repair protein RecR K06187 recR; recombination protein RecR
D Shewmr4_1104 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D Shewmr4_2711 putative exonuclease, RdgC K03554 rdgC; recombination associated protein RdgC
D Shewmr4_2363 type III restriction enzyme, res subunit K19789 radD; DNA repair protein RadD
D Shewmr4_0463 protein of unknown function DUF853, NPT hydrolase putative K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D Shewmr4_1919 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Shewmr4_0004 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Shewmr4_1585 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D Shewmr4_1550 histone family protein DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
D Shewmr4_2492 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Shewmr4_0548 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Shewmr4_0399 helix-turn-helix, Fis-type K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D Shewmr4_1810 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D Shewmr4_1925 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D Shewmr4_3590 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Shewmr4_1946 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Shewmr4_1351 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
D Shewmr4_0947 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D Shewmr4_3210 DNA-directed DNA polymerase K03502 umuC; DNA polymerase V
D Shewmr4_2120 UMUC domain protein DNA-repair protein K03502 umuC; DNA polymerase V
D Shewmr4_1782 putative prophage repressor K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D Shewmr4_3789 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D Shewmr4_2469 DNA damage-inducible DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7]
D Shewmr4_1126 regulatory protein RecX K03565 recX; regulatory protein
D Shewmr4_0376 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D Shewmr4_2470 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D Shewmr4_1805 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D Shewmr4_1916 ribonucleoside-diphosphate reductase class Ia alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Shewmr4_1915 ribonucleoside-diphosphate reductase class Ia beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:she03029]
D Shewmr4_0603 Cytochrome b/b6, N-terminal domain protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D Shewmr4_1026 bacterial translation initiation factor 2 (bIF-2) K02519 infB; translation initiation factor IF-2
D Shewmr4_1956 bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3
D Shewmr4_2640 translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts
D Shewmr4_0185 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D Shewmr4_0197 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D Shewmr4_0698 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G
D Shewmr4_0196 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G
D Shewmr4_2847 GTP-binding protein Era K03595 era; GTPase
D Shewmr4_2880 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Shewmr4_0997 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Shewmr4_1898 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Shewmr4_3496 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Shewmr4_3419 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Shewmr4_2633 surface antigen (D15) K07277 SAM50; outer membrane protein insertion porin family
D Shewmr4_0957 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Shewmr4_2732 GrpE protein K03687 GRPE; molecular chaperone GrpE
D Shewmr4_3397 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Shewmr4_3398 chaperonin Cpn10 K04078 groES; chaperonin GroES
D Shewmr4_0958 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D Shewmr4_1739 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Shewmr4_1742 co-chaperone Hsc20 K04082 hscB; molecular chaperone HscB
D Shewmr4_1573 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin
D Shewmr4_1656 ATP-binding protein, Mrp/Nbp35 family K03593 mrp; ATP-binding protein involved in chromosome partitioning
D Shewmr4_3799 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Shewmr4_3827 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Shewmr4_3793 cytochrome c oxidase assembly protein CtaG/Cox11 K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D Shewmr4_3798 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D Shewmr4_3940 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Shewmr4_3796 conserved hypothetical protein K14998 SURF1; surfeit locus 1 family protein
D Shewmr4_3800 electron transport protein SCO1/SenC K07152 SCO1; protein SCO1
D Shewmr4_0327 electron transport protein SCO1/SenC K07152 SCO1; protein SCO1
D Shewmr4_2251 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:she02000]
D Shewmr4_2422 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D Shewmr4_3356 ABC transporter related K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D Shewmr4_1366 ABC transporter related K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D Shewmr4_0882 lipid A ABC exporter family, fused ATPase and inner membrane subunits K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D Shewmr4_0383 ABC transporter related K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D Shewmr4_3126 ABC transporter related K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D Shewmr4_3127 ABC transporter related K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D Shewmr4_1542 ABC transporter related K15738 uup; ABC transport system ATP-binding/permease protein
D Shewmr4_3012 sulfate ABC transporter, periplasmic sulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D Shewmr4_3013 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D Shewmr4_3014 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D Shewmr4_3015 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D Shewmr4_0277 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D Shewmr4_3195 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D Shewmr4_0667 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D Shewmr4_3196 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein
D Shewmr4_0278 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein
D Shewmr4_3197 molybdate ABC transporter, ATPase subunit K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D Shewmr4_0279 ABC transporter related K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D Shewmr4_3377 ABC transporter related K05776 modF; molybdate transport system ATP-binding protein
D Shewmr4_3874 extracellular solute-binding protein, family 1 K05772 tupA; tungstate transport system substrate-binding protein
D Shewmr4_3875 binding-protein-dependent transport systems inner membrane component K05773 tupB; tungstate transport system permease protein
D Shewmr4_3876 ABC transporter related K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D Shewmr4_3347 extracellular solute-binding protein, family 1 K02012 afuA; iron(III) transport system substrate-binding protein
D Shewmr4_3346 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein
D Shewmr4_3345 ABC transporter related K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D Shewmr4_2918 extracellular solute-binding protein, family 1 K11073 potF; putrescine transport system substrate-binding protein
D Shewmr4_2915 binding-protein-dependent transport systems inner membrane component K11074 potI; putrescine transport system permease protein
D Shewmr4_2916 binding-protein-dependent transport systems inner membrane component K11075 potH; putrescine transport system permease protein
D Shewmr4_2917 spermidine/putrescine ABC transporter ATPase subunit K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D Shewmr4_1986 periplasmic binding protein/LacI transcriptional regulator K23508 ytfQ; galactofuranose transport system substrate-binding protein
D Shewmr4_1989 inner-membrane translocator K23509 ytfT; galactofuranose transport system permease protein
D Shewmr4_1988 inner-membrane translocator K23509 ytfT; galactofuranose transport system permease protein
D Shewmr4_1987 ABC transporter related K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D Shewmr4_0681 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D Shewmr4_0680 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D Shewmr4_0679 ABC transporter related K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D Shewmr4_0682 toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein
D Shewmr4_0683 SpoIIAA family protein K07122 mlaB; phospholipid transport system transporter-binding protein
D Shewmr4_1212 extracellular solute-binding protein, family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D Shewmr4_2707 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Shewmr4_2560 binding-protein-dependent transport systems inner membrane component K02037 pstC; phosphate transport system permease protein
D Shewmr4_2559 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein
D Shewmr4_2558 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Shewmr4_3053 extracellular solute-binding protein, family 3 K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D Shewmr4_3054 polar amino acid ABC transporter, inner membrane subunit K17077 artQ; arginine/lysine/histidine transport system permease protein
D Shewmr4_3055 ABC transporter related K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D Shewmr4_0967 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Shewmr4_1085 conserved hypothetical protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Shewmr4_2750 ABC transporter, periplasmic substrate-binding protein, putative K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Shewmr4_1070 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Shewmr4_1142 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Shewmr4_0358 ABC-type amino acid transport/signal transduction systems periplasmic component/domain-like protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Shewmr4_3192 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Shewmr4_0876 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Shewmr4_2283 conserved hypothetical ABC transporter protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Shewmr4_2813 conserved hypothetical protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Shewmr4_3869 conserved hypothetical protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Shewmr4_2484 extracellular solute-binding protein, family 5 K19226 sapA; cationic peptide transport system substrate-binding protein
D Shewmr4_2485 binding-protein-dependent transport systems inner membrane component K19227 sapB; cationic peptide transport system permease protein
D Shewmr4_2486 binding-protein-dependent transport systems inner membrane component K19228 sapC; cationic peptide transport system permease protein
D Shewmr4_2487 oligopeptide/dipeptide ABC transporter, ATPase subunit K19229 sapD; cationic peptide transport system ATP-binding protein
D Shewmr4_2488 ABC transporter related K19230 sapF; cationic peptide transport system ATP-binding protein
D Shewmr4_0841 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D Shewmr4_0840 ABC transporter related K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D Shewmr4_0848 periplasmic binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein
D Shewmr4_3865 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein
D Shewmr4_3866 ABC transporter related K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D Shewmr4_0567 periplasmic solute binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D Shewmr4_0568 ABC-3 protein K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D Shewmr4_2826 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein
D Shewmr4_2825 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein
D Shewmr4_0674 ABC transporter related K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D Shewmr4_0072 transport protein, putative K09696 natB; sodium transport system permease protein
D Shewmr4_0073 ABC transporter related K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D Shewmr4_0497 copper ABC transporter, permease protein K19341 nosY; Cu-processing system permease protein
D Shewmr4_0496 ABC transporter related K19340 nosF; Cu-processing system ATP-binding protein
D Shewmr4_1732 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein
D Shewmr4_1734 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein
D Shewmr4_1733 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D Shewmr4_0228 Heme exporter protein D (CcmD) K02196 ccmD; heme exporter protein D
D Shewmr4_0229 heme exporter protein CcmC K02195 ccmC; heme exporter protein C
D Shewmr4_0230 heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D Shewmr4_0231 heme exporter protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D Shewmr4_3772 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D Shewmr4_3773 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D Shewmr4_3143 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D Shewmr4_3462 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D Shewmr4_3461 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D Shewmr4_1553 conserved hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Shewmr4_2573 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D Shewmr4_0076 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Shewmr4_3144 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Shewmr4_1552 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Shewmr4_2574 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Shewmr4_0865 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Shewmr4_0864 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Shewmr4_0712 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Shewmr4_1480 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Shewmr4_1479 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Shewmr4_0863 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Shewmr4_0713 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Shewmr4_0455 anion transporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D Shewmr4_1951 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump
D Shewmr4_3802 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D Shewmr4_3315 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D Shewmr4_3399 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D Shewmr4_1623 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D Shewmr4_2747 multi antimicrobial extrusion protein MatE K26937 dinF; MATE family, multidrug efflux pump
D Shewmr4_2132 glucose/galactose transporter K02429 fucP; MFS transporter, FHS family, L-fucose permease
D Shewmr4_2931 glucose/galactose transporter K02429 fucP; MFS transporter, FHS family, L-fucose permease
D Shewmr4_2530 major facilitator superfamily MFS_1 K02429 fucP; MFS transporter, FHS family, L-fucose permease
D Shewmr4_0058 major facilitator superfamily MFS_1 K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter
D Shewmr4_3285 major facilitator superfamily MFS_1 K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D Shewmr4_1417 major facilitator superfamily MFS_1 K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D Shewmr4_2682 major facilitator superfamily MFS_1 K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D Shewmr4_0537 major facilitator superfamily MFS_1 K25223 arsJ; MFS transporter, APGE family, 1-arseno-3-phosphoglycerate exporter
D Shewmr4_2225 nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D Shewmr4_3155 major facilitator superfamily MFS_1 K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D Shewmr4_3750 drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D Shewmr4_1751 drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D Shewmr4_1936 major facilitator superfamily MFS_1 K08154 emrD; MFS transporter, DHA1 family, 2-module integral membrane pump EmrD
D Shewmr4_0508 major facilitator superfamily MFS_1 K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D Shewmr4_2099 drug resistance transporter, EmrB/QacA subfamily K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D Shewmr4_0524 drug resistance transporter, EmrB/QacA subfamily K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D Shewmr4_1622 major facilitator superfamily MFS_1 K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D Shewmr4_1764 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D Shewmr4_2864 PTSINtr with GAF domain, PtsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D Shewmr4_1765 phosphocarrier, HPr family K02784 ptsH; phosphocarrier protein HPr
D Shewmr4_0669 phosphocarrier, HPr family K08485 ptsO; phosphocarrier protein NPr
D Shewmr4_1763 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D Shewmr4_2648 PTS system, glucose-like IIB subunint K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D Shewmr4_0671 PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D Shewmr4_2886 MIP family channel proteins K06188 aqpZ; aquaporin Z
D Shewmr4_2209 Ion transport protein K10716 kch; voltage-gated potassium channel
D Shewmr4_3117 Ion transport 2 domain protein K10716 kch; voltage-gated potassium channel
D Shewmr4_3160 ammonium transporter K03320 amt; ammonium transporter, Amt family
D Shewmr4_3361 Rh family protein/ammonium transporter K03320 amt; ammonium transporter, Amt family
D Shewmr4_3840 Glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Shewmr4_3349 Glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Shewmr4_3183 Glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Shewmr4_0005 Glutathione S-transferase, N-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Shewmr4_1759 Glutathione S-transferase, C-terminal domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Shewmr4_0605 Glutathione S-transferase, N-terminal domain protein K03599 sspA; stringent starvation protein A
D Shewmr4_3385 von Willebrand factor, type A K07114 yfbK; Ca-activated chloride channel homolog
D Shewmr4_2200 Vault protein inter-alpha-trypsin domain protein K07114 yfbK; Ca-activated chloride channel homolog
D Shewmr4_1402 Tetratricopeptide TPR_2 repeat protein K07114 yfbK; Ca-activated chloride channel homolog
D Shewmr4_1403 von Willebrand factor, type A K07114 yfbK; Ca-activated chloride channel homolog
D Shewmr4_3386 von Willebrand factor, type A K07114 yfbK; Ca-activated chloride channel homolog
D Shewmr4_2973 von Willebrand factor, type A K07114 yfbK; Ca-activated chloride channel homolog
D Shewmr4_1973 protein of unknown function UPF0005 K19416 yccA; modulator of FtsH protease
D Shewmr4_1495 formate/nitrite transporter K06212 focA; formate transporter
D Shewmr4_0521 large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel
D Shewmr4_0587 MscS Mechanosensitive ion channel K22051 mscM; miniconductance mechanosensitive channel
D Shewmr4_1205 MscS Mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel
D Shewmr4_0562 MscS Mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel
D Shewmr4_3509 MscS Mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel
D Shewmr4_0117 MscS Mechanosensitive ion channel K16053 ybdG; miniconductance mechanosensitive channel
D Shewmr4_0668 magnesium transporter K06213 mgtE; magnesium transporter
D Shewmr4_2704 MgtE intracellular region K06213 mgtE; magnesium transporter
D Shewmr4_2728 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D Shewmr4_2727 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D Shewmr4_3265 Sel1 domain protein repeat-containing protein K21217 motX; sodium-type polar flagellar protein MotX
D Shewmr4_2374 OmpA/MotB domain protein K21218 motY; sodium-type flagellar protein MotY
D Shewmr4_2463 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB
D Shewmr4_2462 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB
D Shewmr4_2461 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD
D Shewmr4_2371 MotA/TolQ/ExbB proton channel K03562 tolQ; biopolymer transport protein TolQ
D Shewmr4_2370 Biopolymer transport protein ExbD/TolR K03560 tolR; biopolymer transport protein TolR
D Shewmr4_1645 magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter
D Shewmr4_0655 Mg2 transporter protein, CorA family protein K16074 zntB; zinc transporter
D Shewmr4_1966 camphor resistance protein CrcB K06199 crcB; fluoride exporter
D Shewmr4_2789 mercuric transport protein MerT, putative K08363 merT; mercuric ion transport protein
D Shewmr4_2788 Heavy metal transport/detoxification protein K08364 merP; periplasmic mercuric ion binding protein
D Shewmr4_1224 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Shewmr4_2841 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Shewmr4_0359 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Shewmr4_2468 porin, Gram-negative type K09476 ompF; outer membrane pore protein F
D Shewmr4_0256 OmpA domain protein transmembrane region-containing protein K16079 omp31; outer membrane immunogenic protein
D Shewmr4_3100 phosphate-selective porin O and P K07221 oprO_P; phosphate-selective porin OprO and OprP
D Shewmr4_2966 OmpA/MotB domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D Shewmr4_0380 OmpA/MotB domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D Shewmr4_1206 OmpA/MotB domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D Shewmr4_3584 membrane protein involved in aromatic hydrocarbon degradation K06076 fadL; long-chain fatty acid transport protein
D Shewmr4_1397 membrane protein involved in aromatic hydrocarbon degradation K06076 fadL; long-chain fatty acid transport protein
D Shewmr4_1036 nucleoside-specific channel-forming protein, Tsx K05517 tsx; nucleoside-specific channel-forming protein
D Shewmr4_2235 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D Shewmr4_3245 TonB-dependent siderophore receptor K16090 fiu; catecholate siderophore receptor
D Shewmr4_0630 TonB-dependent receptor K16091 fecA; Fe(3+) dicitrate transport protein
D Shewmr4_0935 TonB-dependent receptor K16091 fecA; Fe(3+) dicitrate transport protein
D Shewmr4_3867 TonB-dependent receptor, plug K16092 btuB; vitamin B12 transporter
D Shewmr4_0950 TonB-dependent siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D Shewmr4_1451 TonB-dependent siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D Shewmr4_1806 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D Shewmr4_0622 TonB-dependent copper receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Shewmr4_0531 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Shewmr4_2263 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Shewmr4_3454 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Shewmr4_3540 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Shewmr4_3302 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Shewmr4_3727 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Shewmr4_2942 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Shewmr4_3282 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Shewmr4_0304 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Shewmr4_0286 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Shewmr4_2467 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Shewmr4_2134 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Shewmr4_1859 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Shewmr4_1998 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Shewmr4_1903 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Shewmr4_1497 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Shewmr4_0979 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Shewmr4_2386 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Shewmr4_3184 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Shewmr4_2537 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Shewmr4_2768 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Shewmr4_3922 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Shewmr4_3236 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D Shewmr4_0381 type I secretion outer membrane protein, TolC family K12543 lapE; outer membrane protein, adhesin transport system
D Shewmr4_1863 RND efflux system, outer membrane lipoprotein, NodT family K18300 oprN; outer membrane protein, multidrug efflux system
D Shewmr4_1941 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D Shewmr4_1315 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D Shewmr4_2633 surface antigen (D15) K07277 SAM50; outer membrane protein insertion porin family
D Shewmr4_1231 Pyrrolo-quinoline quinone K17713 bamB; outer membrane protein assembly factor BamB
D Shewmr4_2339 NlpBDapX family lipoprotein K07287 bamC; outer membrane protein assembly factor BamC
D Shewmr4_2994 putative lipoprotein K05807 bamD; outer membrane protein assembly factor BamD
D Shewmr4_2773 SmpA/OmlA domain protein K06186 bamE; outer membrane protein assembly factor BamE
D Shewmr4_1836 surface antigen (D15) K07278 tamA; translocation and assembly module TamA
D Shewmr4_1835 protein of unknown function DUF490 K09800 tamB; translocation and assembly module TamB
D Shewmr4_0675 OstA family protein K09774 lptA; lipopolysaccharide export system protein LptA
D Shewmr4_0676 protein of unknown function DUF1239 K11719 lptC; lipopolysaccharide export system protein LptC
D Shewmr4_0908 Organic solvent tolerance protein K04744 lptD; LPS-assembly protein
D Shewmr4_0996 Rare lipoprotein B K03643 lptE; LPS-assembly lipoprotein
D Shewmr4_1001 CBS domain containing protein K06189 corC; hemolysin (HlyC) family protein
D Shewmr4_3050 LrgA family protein K06518 cidA; holin-like protein
D Shewmr4_1870 major facilitator superfamily MFS_1 K16211 malY; maltose/moltooligosaccharide transporter
D Shewmr4_3668 amino acid permease-associated region K03756 potE; putrescine:ornithine antiporter
D Shewmr4_3760 amino acid permease-associated region K16263 yjeH; amino acid efflux transporter
D Shewmr4_0254 cation diffusion facilitator family transporter K13283 fieF; ferrous-iron efflux pump FieF
D Shewmr4_0518 heavy metal efflux pump, CzcA family K15726 czcA; heavy metal efflux system protein
D Shewmr4_3858 heavy metal efflux pump, CzcA family K15726 czcA; heavy metal efflux system protein
D Shewmr4_3783 heavy metal efflux pump, CzcA family K07787 cusA; copper/silver efflux system protein
D Shewmr4_1074 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18299 mexF; multidrug efflux pump
D Shewmr4_3836 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D Shewmr4_2337 acriflavin resistance protein K18138 acrB; multidrug efflux pump
D Shewmr4_1940 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D Shewmr4_1608 small multidrug resistance protein K11741 sugE; quaternary ammonium compound-resistance protein SugE
D Shewmr4_3735 protein of unknown function DUF6, transmembrane K15269 pecM; probable blue pigment (indigoidine) exporter
D Shewmr4_3592 RarD protein, DMT superfamily transporter K05786 rarD; chloramphenicol-sensitive protein RarD
D Shewmr4_2377 Na+/H+ antiporter NhaC K07084 yuiF; putative amino acid transporter
D Shewmr4_2518 Gluconate transporter K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D Shewmr4_0293 anaerobic c4-dicarboxylate antiporter, Dcu family K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D Shewmr4_2734 L-lactate permease K03303 lutP; lactate permease
D Shewmr4_2552 choline/carnitine/betaine transporter K02168 betT; choline/glycine/proline betaine transport protein
D Shewmr4_3618 Na+/Ca+ antiporter, CaCA family K07301 yrbG; cation:H+ antiporter
D Shewmr4_3045 phosphate transporter K16322 pit; low-affinity inorganic phosphate transporter
D Shewmr4_1398 sodium/proline symporter K11928 putP; sodium/proline symporter
D Shewmr4_1514 Na+/solute symporter K14393 actP; cation/acetate symporter
D Shewmr4_1373 sodium:dicarboxylate symporter K07862 sstT; serine/threonine transporter
D Shewmr4_1482 sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family
D Shewmr4_2860 Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family
D Shewmr4_1567 Na+/H+ antiporter NhaB K03314 nhaB; Na+:H+ antiporter, NhaB family
D Shewmr4_3639 Na+/H+ antiporter NhaC K18218 tet35; tetracycline resistance efflux pump
D Shewmr4_2039 Na+/H+ antiporter NhaC K18218 tet35; tetracycline resistance efflux pump
D Shewmr4_1354 Na+/H+ antiporter NhaC K18218 tet35; tetracycline resistance efflux pump
D Shewmr4_3088 sodium/hydrogen exchanger K11105 cvrA; potassium/hydrogen antiporter
D Shewmr4_2829 sodium/hydrogen exchanger K03316 nhaP; Na+:H+ antiporter
D Shewmr4_2769 potassium efflux system protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D Shewmr4_2623 potassium efflux system protein K03455 KEA1_2_3; K+:H+ antiporter
D Shewmr4_0021 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein
D Shewmr4_0025 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein
D Shewmr4_0051 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein
D Shewmr4_0026 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein
D Shewmr4_0052 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein
D Shewmr4_1574 uracil-xanthine permease K02824 uraA; uracil permease
D Shewmr4_0951 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D Shewmr4_1054 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D Shewmr4_3026 aromatic amino acid permease K03834 tyrP; tyrosine-specific transport protein
D Shewmr4_1792 aromatic amino acid transporter K03834 tyrP; tyrosine-specific transport protein
D Shewmr4_3787 aromatic amino acid transporter K03835 mtr; tryptophan-specific transport protein
D Shewmr4_0761 Amino acid transporter, transmembrane K03837 sdaC; serine transporter
D Shewmr4_2791 putative HAAAP family transport protein K26604 cyuP; cysteine uptake transport protein
D Shewmr4_0325 benzoate transporter K05782 benE; benzoate membrane transport protein
D Shewmr4_2891 Cl-channel, voltage-gated family protein K03281 clcA; chloride channel protein, CIC family
D Shewmr4_0823 chromate transporter, chromate ion transporter (CHR) family K07240 chrA; chromate transporter
D Shewmr4_2974 sulfate transporter K03321 TC.SULP; sulfate permease, SulP family
D Shewmr4_2406 sulphate transporter K03321 TC.SULP; sulfate permease, SulP family
D Shewmr4_1363 TRAP dicarboxylate transporter, DctP subunit K11688 dctP; C4-dicarboxylate-binding protein DctP
D Shewmr4_1362 Tripartite ATP-independent periplasmic transporter, DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D Shewmr4_1361 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D Shewmr4_0533 Bile acid:sodium symporter K03325 ACR3; arsenite transporter
D Shewmr4_2959 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D Shewmr4_1105 Auxin Efflux Carrier K13936 mdcF; malonate transporter and related proteins
D Shewmr4_1654 Auxin Efflux Carrier K13936 mdcF; malonate transporter and related proteins
D Shewmr4_2343 Lysine exporter protein (LYSE/YGGA) K06895 lysE; L-lysine exporter family protein LysE/ArgO
D Shewmr4_2295 Lysine exporter protein (LYSE/YGGA) K05834 rhtB; homoserine/homoserine lactone efflux protein
D Shewmr4_0118 Lysine exporter protein (LYSE/YGGA) K05834 rhtB; homoserine/homoserine lactone efflux protein
D Shewmr4_3366 Lysine exporter protein (LYSE/YGGA) K05835 rhtC; threonine efflux protein
D Shewmr4_0890 Lysine exporter protein (LYSE/YGGA) K05835 rhtC; threonine efflux protein
D Shewmr4_2528 AzlC family protein K26605 azlC; branched chain amino acid efflux pump
D Shewmr4_2529 branched-chain amino acid transport K26606 azlD; branched chain amino acid efflux pump
D Shewmr4_3097 protein of unknown function DUF112, transmembrane K07793 tctA; putative tricarboxylic transport membrane protein
D Shewmr4_3098 putative tricarboxylic transport membrane protein K07794 tctB; putative tricarboxylic transport membrane protein
D Shewmr4_3099 Uncharacterized protein UPF0065 K07795 tctC; putative tricarboxylic transport membrane protein
D Shewmr4_2345 protein of unknown function UPF0118 K03548 perM; putative permease
D Shewmr4_3870 conserved hypothetical integral membrane protein K09125 yhhQ; queuosine precursor transporter
D Shewmr4_1684 multiple antibiotic resistance (MarC)-related proteins K05595 marC; multiple antibiotic resistance protein
D Shewmr4_3571 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D Shewmr4_3759 TonB family protein K03832 tonB; periplasmic protein TonB
D Shewmr4_2460 TonB family protein K03832 tonB; periplasmic protein TonB
D Shewmr4_3515 TonB family protein K03832 tonB; periplasmic protein TonB
D Shewmr4_3544 TonB family protein K03832 tonB; periplasmic protein TonB
D Shewmr4_2367 OmpA/MotB domain protein K03640 pal; peptidoglycan-associated lipoprotein
D Shewmr4_2369 TolA family protein K03646 tolA; colicin import membrane protein
D Shewmr4_2368 TolB, N-terminal domain protein K03641 tolB; TolB protein
D Shewmr4_2985 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D Shewmr4_2986 oxaloacetate decarboxylase alpha subunit K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D Shewmr4_2987 sodium pump decarboxylases, gamma subunit K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma
D Shewmr4_2226 respiratory nitrate reductase alpha subunit apoprotein K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D Shewmr4_2227 respiratory nitrate reductase beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D Shewmr4_2229 respiratory nitrate reductase gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D Shewmr4_0103 formate dehydrogenase beta subunit K08349 fdnH; formate dehydrogenase-N, beta subunit
D Shewmr4_3677 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D Shewmr4_3678 4Fe-4S ferredoxin, iron-sulfur binding domain protein K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D Shewmr4_1051 trimethylamine-N-oxide reductase TorA K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D Shewmr4_1052 trimethylamine-N-oxide reductase c-type cytochrome TorC K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D Shewmr4_1050 cytoplasmic chaperone TorD family protein K03533 torD; TorA specific chaperone
D Shewmr4_3444 Twin-arginine translocation pathway signal K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5]
D Shewmr4_3443 4Fe-4S ferredoxin, iron-sulfur binding domain protein K16293 psrB; polysulfide reductase chain B
D Shewmr4_3442 Polysulphide reductase, NrfD K16294 psrC; polysulfide reductase chain C
D Shewmr4_0633 molydopterin dinucleotide-binding region K08357 ttrA; tetrathionate reductase subunit A
D Shewmr4_0635 4Fe-4S ferredoxin, iron-sulfur binding domain protein K08358 ttrB; tetrathionate reductase subunit B
D Shewmr4_0634 Polysulphide reductase, NrfD K08359 ttrC; tetrathionate reductase subunit C
D Shewmr4_2100 secretion protein HlyD family protein K03543 emrA; membrane fusion protein, multidrug efflux system
D Shewmr4_0523 secretion protein HlyD family protein K03543 emrA; membrane fusion protein, multidrug efflux system
D Shewmr4_3782 efflux transporter, RND family, MFP subunit K07798 cusB; membrane fusion protein, copper/silver efflux system
D Shewmr4_0382 type I secretion membrane fusion protein, HlyD family K12542 lapC; membrane fusion protein, adhesin transport system
D Shewmr4_1073 efflux transporter, RND family, MFP subunit K18298 mexE; membrane fusion protein, multidrug efflux system
D Shewmr4_3837 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Shewmr4_2338 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Shewmr4_1939 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Shewmr4_1084 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Shewmr4_1629 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Shewmr4_1861 efflux transporter, RND family, MFP subunit K21137 triB; membrane fusion protein, multidrug efflux system
D Shewmr4_0789 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system
D Shewmr4_2308 nicotinamide mononucleotide transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter
D Shewmr4_2505 FeoA family protein K04758 feoA; ferrous iron transport protein A
D Shewmr4_2504 ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D Shewmr4_0234 cytochrome c-type biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D Shewmr4_0487 cytochrome c-type biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D Shewmr4_3004 MltA-interacting MipA family protein K07274 mipA; MipA family protein
D Shewmr4_0821 MltA-interacting MipA family protein K07274 mipA; MipA family protein
C 02044 Secretion system [BR:she02044]
D Shewmr4_3236 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D Shewmr4_0383 ABC transporter related K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D Shewmr4_0382 type I secretion membrane fusion protein, HlyD family K12542 lapC; membrane fusion protein, adhesin transport system
D Shewmr4_0381 type I secretion outer membrane protein, TolC family K12543 lapE; outer membrane protein, adhesin transport system
D Shewmr4_2896 Peptidoglycan-binding domain 1 protein K02450 gspA; general secretion pathway protein A
D Shewmr4_2895 general secretion pathway protein B K02451 gspB; general secretion pathway protein B
D Shewmr4_0155 general secretion pathway protein C K02452 gspC; general secretion pathway protein C
D Shewmr4_0156 general secretion pathway protein D K02453 gspD; general secretion pathway protein D
D Shewmr4_0157 type II secretion system protein E (GspE) K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D Shewmr4_0158 general secretion pathway protein F K02455 gspF; general secretion pathway protein F
D Shewmr4_0159 general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D Shewmr4_0160 general secretion pathway protein H K02457 gspH; general secretion pathway protein H
D Shewmr4_0161 general secretion pathway protein I K02458 gspI; general secretion pathway protein I
D Shewmr4_0162 general secretion pathway protein J K02459 gspJ; general secretion pathway protein J
D Shewmr4_0163 General secretion pathway protein K K02460 gspK; general secretion pathway protein K
D Shewmr4_0164 general secretion pathway protein L K02461 gspL; general secretion pathway protein L
D Shewmr4_0165 General secretion pathway M protein K02462 gspM; general secretion pathway protein M
D Shewmr4_0166 type II secretion system protein N K02463 gspN; general secretion pathway protein N
D Shewmr4_0418 type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Shewmr4_0422 methylation site containing protein K02650 pilA; type IV pilus assembly protein PilA
D Shewmr4_0420 type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB
D Shewmr4_0419 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC
D Shewmr4_0710 methylation site containing protein K02655 pilE; type IV pilus assembly protein PilE
D Shewmr4_0852 methylation site containing protein K02655 pilE; type IV pilus assembly protein PilE
D Shewmr4_2949 methylation site containing protein K02655 pilE; type IV pilus assembly protein PilE
D Shewmr4_1226 type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
D Shewmr4_3703 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D Shewmr4_3702 Fimbrial assembly family protein K02663 pilN; type IV pilus assembly protein PilN
D Shewmr4_3701 Pilus assembly protein, PilO K02664 pilO; type IV pilus assembly protein PilO
D Shewmr4_3700 Pilus assembly protein, PilQ K02665 pilP; type IV pilus assembly protein PilP
D Shewmr4_3699 type IV pilus secretin PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D Shewmr4_1194 pilus retraction ATPase PilT K02669 pilT; twitching motility protein PilT
D Shewmr4_1195 twitching motility protein K02670 pilU; twitching motility protein PilU
D Shewmr4_2953 type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV
D Shewmr4_0854 type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV
D Shewmr4_0708 Prepilin-type cleavage/methylation-like protein K02671 pilV; type IV pilus assembly protein PilV
D Shewmr4_2952 Prepilin-type cleavage/methylation-like protein K02672 pilW; type IV pilus assembly protein PilW
D Shewmr4_2951 type IV pilus assembly protein PilX K02673 pilX; type IV pilus assembly protein PilX
D Shewmr4_2950 type IV pilin biogenesis protein, putative K02674 pilY1; type IV pilus assembly protein PilY1
D Shewmr4_1087 type IV pilin biogenesis protein, putative K02674 pilY1; type IV pilus assembly protein PilY1
D Shewmr4_1663 type IV pilus biogenesis protein pilZ K02676 pilZ; type IV pilus assembly protein PilZ
D Shewmr4_2946 methylation site containing protein K08084 fimT; type IV fimbrial biogenesis protein FimT
D Shewmr4_0853 methylation site containing protein K08084 fimT; type IV fimbrial biogenesis protein FimT
D Shewmr4_2947 methylation site containing protein K08085 fimU; type IV fimbrial biogenesis protein FimU
D Shewmr4_1425 putative membrane protein K08086 fimV; pilus assembly protein FimV
D Shewmr4_3296 methylation site containing protein K10924 mshA; MSHA pilin protein MshA
D Shewmr4_3479 methylation site containing protein K10924 mshA; MSHA pilin protein MshA
D Shewmr4_3478 methylation site containing protein K10924 mshA; MSHA pilin protein MshA
D Shewmr4_0999 methylation site containing protein K10924 mshA; MSHA pilin protein MshA
D Shewmr4_3480 methylation site containing protein K10925 mshB; MSHA pilin protein MshB
D Shewmr4_3477 methylation site containing protein K10926 mshC; MSHA pilin protein MshC
D Shewmr4_3476 methylation site containing protein K10927 mshD; MSHA pilin protein MshD
D Shewmr4_3483 type II secretion system protein E K12276 mshE; MSHA biogenesis protein MshE
D Shewmr4_3482 type II secretion system protein K12278 mshG; MSHA biogenesis protein MshG
D Shewmr4_3490 conserved hypothetical biogenesis protein MshI K12279 mshI; MSHA biogenesis protein MshI
D Shewmr4_3488 MSHA biogenesis protein MshJ K12280 mshJ; MSHA biogenesis protein MshJ
D Shewmr4_3487 MSHA biogenesis protein MshK K12281 mshK; MSHA biogenesis protein MshK
D Shewmr4_3486 pilus (MSHA type) biogenesis protein MshL K12282 mshL; MSHA biogenesis protein MshL
D Shewmr4_3485 MSHA biogenesis protein MshM K12283 mshM; MSHA biogenesis protein MshM
D Shewmr4_3484 Tetratricopeptide TPR_2 repeat protein K12284 mshN; MSHA biogenesis protein MshN
D Shewmr4_3475 methylation site containing protein K12285 mshO; MSHA biogenesis protein MshO
D Shewmr4_3474 MSHA biogenesis protein MshP K12286 mshP; MSHA biogenesis protein MshP
D Shewmr4_3473 MSHA biogenesis protein MshQ K12287 mshQ; MSHA biogenesis protein MshQ
D Shewmr4_1191 protein of unknown function YGGT K02221 yggT; YggT family protein
D Shewmr4_2476 competence protein ComEA helix-hairpin-helix repeat protein K02237 comEA; competence protein ComEA
D Shewmr4_2423 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D Shewmr4_1296 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D Shewmr4_1295 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D Shewmr4_1309 FlhB domain protein K04061 flhB2; flagellar biosynthesis protein
D Shewmr4_1282 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D Shewmr4_1284 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D Shewmr4_1285 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D Shewmr4_1290 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D Shewmr4_1291 flagellar biosynthesis protein, FliO K02418 fliO; flagellar protein FliO/FliZ
D Shewmr4_1292 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D Shewmr4_1293 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D Shewmr4_1294 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D Shewmr4_0796 thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D Shewmr4_2237 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D Shewmr4_2235 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D Shewmr4_0722 Curlin associated repeat protein K04335 csgB; minor curlin subunit
D Shewmr4_0868 curli production assembly/transport component CsgE, putative K04337 csgE; curli production assembly/transport component CsgE
D Shewmr4_0869 curli production assembly/transport component CsgF, putative K04338 csgF; curli production assembly/transport component CsgF
D Shewmr4_0870 Curli production assembly/transport component CsgG K06214 csgG; curli production assembly/transport component CsgG
D Shewmr4_3562 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Shewmr4_0047 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB
D Shewmr4_1384 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D Shewmr4_1015 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D Shewmr4_0186 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE
D Shewmr4_1016 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D Shewmr4_1385 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF
D Shewmr4_1023 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG
D Shewmr4_0219 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D Shewmr4_2839 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Shewmr4_3774 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Shewmr4_1383 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D Shewmr4_3940 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Shewmr4_3554 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D Shewmr4_3555 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB
D Shewmr4_3556 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:she02042]
D Shewmr4_1498 C4-dicarboxylate transporter/malic acid transport protein K11041 eta; exfoliative toxin A/B
D Shewmr4_1224 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Shewmr4_2841 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Shewmr4_0359 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Shewmr4_1879 channel protein, hemolysin III family K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:she02022]
D Shewmr4_2708 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Shewmr4_2709 two component transcriptional regulator, winged helix family K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D Shewmr4_1579 periplasmic sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D Shewmr4_3818 periplasmic sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D Shewmr4_1580 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP
D Shewmr4_3817 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP
D Shewmr4_3812 periplasmic sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D Shewmr4_3811 two component transcriptional regulator, winged helix family K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D Shewmr4_0819 two component transcriptional regulator, winged helix family K07661 rstA; two-component system, OmpR family, response regulator RstA
D Shewmr4_0251 periplasmic sensor signal transduction histidine kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D Shewmr4_0252 two component transcriptional regulator, winged helix family K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D Shewmr4_1904 two component transcriptional regulator, winged helix family K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D Shewmr4_1828 periplasmic sensor signal transduction histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D Shewmr4_1827 two component transcriptional regulator, winged helix family K07666 qseB; two-component system, OmpR family, response regulator QseB
D Shewmr4_0053 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D Shewmr4_1049 multi-sensor hybrid histidine kinase K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3]
D Shewmr4_1047 two component transcriptional regulator, winged helix family K07772 torR; two-component system, OmpR family, torCAD operon response regulator TorR
D Shewmr4_0651 two component transcriptional regulator, winged helix family K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D Shewmr4_3007 periplasmic sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D Shewmr4_0818 periplasmic sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D Shewmr4_0281 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator
D Shewmr4_2202 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator
D Shewmr4_3006 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator
D Shewmr4_0240 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator
D Shewmr4_0616 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator
D Shewmr4_2224 histidine kinase, dimerisation and phosphoacceptor region K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D Shewmr4_2223 two component transcriptional regulator, LuxR family K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D Shewmr4_0658 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D Shewmr4_0657 two component transcriptional regulator, LuxR family K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D Shewmr4_1109 Hpt sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D Shewmr4_1547 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D Shewmr4_3620 putative signal transduction histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D Shewmr4_3621 two component transcriptional regulator, LuxR family K07693 desR; two-component system, NarL family, response regulator DesR
D Shewmr4_3096 signal transduction histidine kinase regulating citrate/malate metabolism K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3]
D Shewmr4_3095 response regulator receiver and unknown domain protein K02475 K02475; two-component system, CitB family, response regulator
D Shewmr4_0056 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D Shewmr4_2431 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D Shewmr4_0057 response regulator receiver protein K02477 K02477; two-component system, LytTR family, response regulator
D Shewmr4_2432 response regulator receiver protein K02477 K02477; two-component system, LytTR family, response regulator
D Shewmr4_0258 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D Shewmr4_0257 nitrogen metabolism transcriptional regulator, NtrC, Fis family K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D Shewmr4_2684 periplasmic sensor signal transduction histidine kinase K08475 pgtB; two-component system, NtrC family, phosphoglycerate transport system sensor histidine kinase PgtB [EC:2.7.13.3]
D Shewmr4_2685 two component, sigma54 specific, transcriptional regulator, Fis family K08476 pgtA; two-component system, NtrC family, phosphoglycerate transport system response regulator PgtA
D Shewmr4_1360 periplasmic sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D Shewmr4_1359 two component, sigma54 specific, transcriptional regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
D Shewmr4_3872 periplasmic sensor signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D Shewmr4_2093 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Shewmr4_1302 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Shewmr4_0549 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Shewmr4_1300 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Shewmr4_2094 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Shewmr4_1303 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Shewmr4_2088 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Shewmr4_1257 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Shewmr4_1372 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Shewmr4_2272 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Shewmr4_0636 periplasmic sensor signal transduction histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3]
D Shewmr4_3516 histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3]
D Shewmr4_0637 two component transcriptional regulator, LuxR family K13041 ttrR; two-component system, LuxR family, response regulator TtrR
D Shewmr4_3517 two component transcriptional regulator, LuxR family K13041 ttrR; two-component system, LuxR family, response regulator TtrR
D Shewmr4_1279 PAS/PAC sensor signal transduction histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D Shewmr4_1280 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC
D Shewmr4_3530 periplasmic sensor signal transduction histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D Shewmr4_3529 response regulator receiver protein K15012 regA; two-component system, response regulator RegA
D Shewmr4_2095 response regulator receiver protein K20977 hsbR; two-component system, HptB-dependent secretion and biofilm response regulator
C 02035 Bacterial motility proteins [BR:she02035]
D Shewmr4_2093 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Shewmr4_1302 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Shewmr4_2092 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Shewmr4_1306 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Shewmr4_1307 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Shewmr4_3246 putative chemotaxis protein CheX K03409 cheX; chemotaxis protein CheX
D Shewmr4_2089 CheD, stimulates methylation of MCP proteins K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D Shewmr4_1258 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Shewmr4_2090 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Shewmr4_1303 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Shewmr4_2088 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Shewmr4_0549 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Shewmr4_1300 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Shewmr4_2094 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Shewmr4_1301 chemotaxis phosphatase, CheZ K03414 cheZ; chemotaxis protein CheZ
D Shewmr4_1257 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Shewmr4_1372 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Shewmr4_2272 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Shewmr4_0924 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_2937 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_1243 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_0271 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_0326 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_0632 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_0902 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_1155 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_0824 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_1767 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_1807 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_2091 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_2097 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_3042 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_2909 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_2995 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_3174 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_3323 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_3785 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_3728 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_3752 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_1442 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_3130 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Shewmr4_0583 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor
D Shewmr4_2808 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor
D Shewmr4_1149 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor
D Shewmr4_1284 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D Shewmr4_1285 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D Shewmr4_1286 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D Shewmr4_1291 flagellar biosynthesis protein, FliO K02418 fliO; flagellar protein FliO/FliZ
D Shewmr4_1292 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D Shewmr4_1293 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D Shewmr4_1294 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D Shewmr4_1296 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D Shewmr4_1295 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D Shewmr4_1283 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D Shewmr4_1289 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D Shewmr4_1290 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D Shewmr4_1282 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D Shewmr4_1266 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D Shewmr4_1256 flagellar basal-body P-ring formation protein FlgA, putative K02386 flgA; flagellar basal body P-ring formation protein FlgA
D Shewmr4_1265 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D Shewmr4_0127 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D Shewmr4_1288 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D Shewmr4_1281 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D Shewmr4_1287 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D Shewmr4_1259 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D Shewmr4_1260 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D Shewmr4_1261 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D Shewmr4_1263 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D Shewmr4_1264 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D Shewmr4_1267 flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D Shewmr4_1262 flagellar basal body FlaE domain protein K02390 flgE; flagellar hook protein FlgE
D Shewmr4_1268 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D Shewmr4_1269 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D Shewmr4_1254 FlgN family protein K02399 flgN; flagellar biosynthesis protein FlgN
D Shewmr4_1253 protein of unknown function DUF400 K09860 flgP; outer membrane protein FlgP
D Shewmr4_3265 Sel1 domain protein repeat-containing protein K21217 motX; sodium-type polar flagellar protein MotX
D Shewmr4_2374 OmpA/MotB domain protein K21218 motY; sodium-type flagellar protein MotY
D Shewmr4_1270 flagellin domain protein K02406 fliC; flagellin
D Shewmr4_1273 flagellin domain protein K02406 fliC; flagellin
D Shewmr4_1275 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2
D Shewmr4_1277 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D Shewmr4_1299 RNA polymerase, sigma 28 subunit K02405 fliA; RNA polymerase sigma factor FliA
D Shewmr4_2728 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D Shewmr4_2727 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D Shewmr4_1278 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D Shewmr4_1279 PAS/PAC sensor signal transduction histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D Shewmr4_1280 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC
D Shewmr4_1255 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D Shewmr4_1274 flagellar protein FlaG protein K06603 flaG; flagellar protein FlaG
D Shewmr4_1297 GTP-binding signal recognition particle SRP54, G-domain K02404 flhF; flagellar biosynthesis protein FlhF
D Shewmr4_1298 Cobyrinic acid a,c-diamide synthase K04562 flhG; flagellar biosynthesis protein FlhG
D Shewmr4_1194 pilus retraction ATPase PilT K02669 pilT; twitching motility protein PilT
D Shewmr4_1195 twitching motility protein K02670 pilU; twitching motility protein PilU
D Shewmr4_0422 methylation site containing protein K02650 pilA; type IV pilus assembly protein PilA
D Shewmr4_0420 type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB
D Shewmr4_0419 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC
D Shewmr4_0418 type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Shewmr4_1226 type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
D Shewmr4_3699 type IV pilus secretin PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D Shewmr4_3700 Pilus assembly protein, PilQ K02665 pilP; type IV pilus assembly protein PilP
D Shewmr4_3701 Pilus assembly protein, PilO K02664 pilO; type IV pilus assembly protein PilO
D Shewmr4_3702 Fimbrial assembly family protein K02663 pilN; type IV pilus assembly protein PilN
D Shewmr4_3703 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D Shewmr4_1663 type IV pilus biogenesis protein pilZ K02676 pilZ; type IV pilus assembly protein PilZ
D Shewmr4_2953 type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV
D Shewmr4_0854 type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV
D Shewmr4_0708 Prepilin-type cleavage/methylation-like protein K02671 pilV; type IV pilus assembly protein PilV
D Shewmr4_2952 Prepilin-type cleavage/methylation-like protein K02672 pilW; type IV pilus assembly protein PilW
D Shewmr4_2951 type IV pilus assembly protein PilX K02673 pilX; type IV pilus assembly protein PilX
D Shewmr4_2950 type IV pilin biogenesis protein, putative K02674 pilY1; type IV pilus assembly protein PilY1
D Shewmr4_1087 type IV pilin biogenesis protein, putative K02674 pilY1; type IV pilus assembly protein PilY1
D Shewmr4_0710 methylation site containing protein K02655 pilE; type IV pilus assembly protein PilE
D Shewmr4_0852 methylation site containing protein K02655 pilE; type IV pilus assembly protein PilE
D Shewmr4_2949 methylation site containing protein K02655 pilE; type IV pilus assembly protein PilE
D Shewmr4_2237 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D Shewmr4_2235 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:she04812]
D Shewmr4_3472 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D Shewmr4_3566 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Shewmr4_3745 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Shewmr4_3567 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D Shewmr4_2173 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D Shewmr4_2174 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D Shewmr4_2175 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D Shewmr4_3934 chromosome segregation ATPase K03496 parA; chromosome partitioning protein
D Shewmr4_2428 conserved hypothetical protein K03496 parA; chromosome partitioning protein
D Shewmr4_1305 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein
D Shewmr4_1214 conserved hypothetical protein K03496 parA; chromosome partitioning protein
D Shewmr4_3933 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:she04147]
D Shewmr4_2251 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
D Shewmr4_1115 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Shewmr4_2021 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Shewmr4_2023 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Shewmr4_0775 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Shewmr4_2048 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Shewmr4_3153 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D Shewmr4_2760 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D Shewmr4_2376 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D Shewmr4_2816 band 7 protein K07192 FLOT; flotillin
D Shewmr4_3397 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Shewmr4_0957 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Shewmr4_2968 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Shewmr4_0650 dipeptidyl-peptidase IV. Serine peptidase. MEROPS family S09B K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D Shewmr4_1234 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D Shewmr4_0185 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D Shewmr4_0197 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D Shewmr4_2314 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D Shewmr4_0078 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Shewmr4_2177 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Shewmr4_0883 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Shewmr4_3617 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Shewmr4_2597 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Shewmr4_2051 Peptidyl-dipeptidase A K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1]
D Shewmr4_2249 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D Shewmr4_2255 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D Shewmr4_3705 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Shewmr4_3706 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Shewmr4_0649 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Shewmr4_3408 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D Shewmr4_2758 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D Shewmr4_3583 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D Shewmr4_0305 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Shewmr4_2919 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Shewmr4_2183 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Shewmr4_3560 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Shewmr4_2292 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D Shewmr4_2606 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D Shewmr4_0688 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D Shewmr4_3369 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D Shewmr4_3370 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D Shewmr4_0718 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Shewmr4_0445 IMP cyclohydrolase / phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Shewmr4_0430 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Shewmr4_1353 electron transfer flavoprotein, alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit
D Shewmr4_2046 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Shewmr4_1022 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Shewmr4_2585 Lipocalin family protein K03098 APOD; apolipoprotein D and lipocalin family protein
C 02048 Prokaryotic defense system [BR:she02048]
D Shewmr4_3695 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D Shewmr4_3202 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Shewmr4_2778 type III restriction enzyme, res subunit K01156 res; type III restriction enzyme [EC:3.1.21.5]
D Shewmr4_2779 DNA methylase N-4/N-6 domain protein K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D Shewmr4_3203 hypothetical protein K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]
D Shewmr4_3395 HipA domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D Shewmr4_2480 phage shock protein C, PspC K03973 pspC; phage shock protein C
D Shewmr4_2481 phage shock B family protein K03970 pspB; phage shock protein B
D Shewmr4_0332 plasmid stabilization system K19092 parE1_3_4; toxin ParE1/3/4
D Shewmr4_3566 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Shewmr4_3745 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Shewmr4_3472 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D Shewmr4_3229 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D Shewmr4_3231 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D Shewmr4_1365 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Shewmr4_1697 YagBYeeUYfjZ family protein K18838 cbeA; cytoskeleton bundling-enhancing protein CbeA and related proteins
D Shewmr4_2856 conserved hypothetical protein K19168 cptA; toxin CptA
D Shewmr4_2857 protein of unknown function DUF339 K09159 cptB; antitoxin CptB
D Shewmr4_1739 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels [BR:she04040]
D Shewmr4_3393 putative outer membrane adhesin like protein K05030 CLCA3_4; calcium-activated chloride channel regulator 3/4
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:she04090]
D Shewmr4_0650 dipeptidyl-peptidase IV. Serine peptidase. MEROPS family S09B K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D Shewmr4_2051 Peptidyl-dipeptidase A K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1]
C 01504 Antimicrobial resistance genes [BR:she01504]
D Shewmr4_0694 Beta-lactamase K18976 blaOXA-48; beta-lactamase class D OXA-48 [EC:3.5.2.6]
D Shewmr4_3639 Na+/H+ antiporter NhaC K18218 tet35; tetracycline resistance efflux pump
D Shewmr4_2039 Na+/H+ antiporter NhaC K18218 tet35; tetracycline resistance efflux pump
D Shewmr4_1354 Na+/H+ antiporter NhaC K18218 tet35; tetracycline resistance efflux pump
D Shewmr4_2526 streptogramin A acetyl transferase K18234 vat; virginiamycin A acetyltransferase [EC:2.3.1.-]
D Shewmr4_3445 pentapeptide repeat protein K18555 qnr; fluoroquinolone resistance protein
D Shewmr4_1475 protein of unknown function DUF470 K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
D Shewmr4_1579 periplasmic sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D Shewmr4_3818 periplasmic sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D Shewmr4_1580 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP
D Shewmr4_3817 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP
D Shewmr4_3837 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Shewmr4_2338 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Shewmr4_1939 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Shewmr4_1084 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Shewmr4_1629 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Shewmr4_3836 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D Shewmr4_2337 acriflavin resistance protein K18138 acrB; multidrug efflux pump
D Shewmr4_1940 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D Shewmr4_1941 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D Shewmr4_1073 efflux transporter, RND family, MFP subunit K18298 mexE; membrane fusion protein, multidrug efflux system
D Shewmr4_1074 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18299 mexF; multidrug efflux pump
D Shewmr4_1863 RND efflux system, outer membrane lipoprotein, NodT family K18300 oprN; outer membrane protein, multidrug efflux system
D Shewmr4_1247 transcriptional regulator, TetR family K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D Shewmr4_2588 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D Shewmr4_0085 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D Shewmr4_3236 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D Shewmr4_2468 porin, Gram-negative type K09476 ompF; outer membrane pore protein F
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:she00537]
D Shewmr4_0688 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D Shewmr4_3369 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D Shewmr4_3370 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:she03100]
D Shewmr4_R0009 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Shewmr4_R0073 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Shewmr4_R0062 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Shewmr4_R0064 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Shewmr4_R0020 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Shewmr4_R0054 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Shewmr4_R0116 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Shewmr4_R0043 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Shewmr4_R0045 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Shewmr4_R0047 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Shewmr4_R0049 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Shewmr4_R0046 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Shewmr4_R0044 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Shewmr4_R0098 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Shewmr4_R0101 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Shewmr4_R0100 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Shewmr4_R0102 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Shewmr4_R0099 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Shewmr4_R0004 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Shewmr4_R0104 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Shewmr4_R0019 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Shewmr4_R0103 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Shewmr4_R0083 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Shewmr4_R0093 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Shewmr4_R0034 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Shewmr4_R0038 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Shewmr4_R0035 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Shewmr4_R0063 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Shewmr4_R0067 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Shewmr4_R0069 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Shewmr4_R0068 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Shewmr4_R0065 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Shewmr4_R0070 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Shewmr4_R0066 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Shewmr4_R0024 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Shewmr4_R0026 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Shewmr4_R0094 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Shewmr4_R0025 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Shewmr4_R0027 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Shewmr4_R0082 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Shewmr4_R0014 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Shewmr4_R0021 tRNA-His K14226 tRNA-His; tRNA His
D Shewmr4_R0115 tRNA-His K14226 tRNA-His; tRNA His
D Shewmr4_R0008 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Shewmr4_R0072 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Shewmr4_R0039 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Shewmr4_R0037 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Shewmr4_R0033 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Shewmr4_R0128 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Shewmr4_R0125 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Shewmr4_R0126 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Shewmr4_R0084 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Shewmr4_R0085 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Shewmr4_R0092 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Shewmr4_R0107 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Shewmr4_R0113 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Shewmr4_R0109 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Shewmr4_R0108 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Shewmr4_R0110 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Shewmr4_R0111 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Shewmr4_R0112 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Shewmr4_R0032 tRNA-Met K14230 tRNA-Met; tRNA Met
D Shewmr4_R0036 tRNA-Met K14230 tRNA-Met; tRNA Met
D Shewmr4_R0120 tRNA-Met K14230 tRNA-Met; tRNA Met
D Shewmr4_R0040 tRNA-Met K14230 tRNA-Met; tRNA Met
D Shewmr4_R0076 tRNA-Met K14230 tRNA-Met; tRNA Met
D Shewmr4_R0077 tRNA-Met K14230 tRNA-Met; tRNA Met
D Shewmr4_R0078 tRNA-Met K14230 tRNA-Met; tRNA Met
D Shewmr4_R0079 tRNA-Met K14230 tRNA-Met; tRNA Met
D Shewmr4_R0051 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Shewmr4_R0124 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Shewmr4_R0053 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Shewmr4_R0022 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Shewmr4_R0023 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Shewmr4_R0117 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Shewmr4_R0105 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Shewmr4_R0080 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Shewmr4_R0091 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Shewmr4_R0081 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Shewmr4_R0042 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Shewmr4_R0048 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Shewmr4_R0086 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Shewmr4_R0133 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Shewmr4_R0015 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Shewmr4_R0012 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Shewmr4_R0050 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Shewmr4_R0052 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Shewmr4_R0031 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D Shewmr4_R0013 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Shewmr4_R0096 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Shewmr4_R0095 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Shewmr4_R0097 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Shewmr4_R0056 tRNA-Val K14237 tRNA-Val; tRNA Val
D Shewmr4_R0057 tRNA-Val K14237 tRNA-Val; tRNA Val
D Shewmr4_R0058 tRNA-Val K14237 tRNA-Val; tRNA Val
D Shewmr4_R0060 tRNA-Val K14237 tRNA-Val; tRNA Val
D Shewmr4_R0059 tRNA-Val K14237 tRNA-Val; tRNA Val
D Shewmr4_R0061 tRNA-Val K14237 tRNA-Val; tRNA Val
D Shewmr4_R0089 tRNA-Val K14237 tRNA-Val; tRNA Val
D Shewmr4_R0090 tRNA-Val K14237 tRNA-Val; tRNA Val
D Shewmr4_R0005 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D Shewmr4_R0143 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Shewmr4_R0071 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Shewmr4_R0123 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Shewmr4_R0132 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Shewmr4_R0140 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Shewmr4_R0016 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Shewmr4_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Shewmr4_R0007 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Shewmr4_R0136 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Shewmr4_R0002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Shewmr4_R0142 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Shewmr4_R0135 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Shewmr4_R0010 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Shewmr4_R0139 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Shewmr4_R0131 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Shewmr4_R0017 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Shewmr4_R0074 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Shewmr4_R0122 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Shewmr4_R0003 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Shewmr4_R0134 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Shewmr4_R0141 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Shewmr4_R0138 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Shewmr4_R0018 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Shewmr4_R0011 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Shewmr4_R0075 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Shewmr4_R0130 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Shewmr4_R0121 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Shewmr4_R0114 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA
D Shewmr4_R0137 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA
D Shewmr4_R0119 ssrA; prediction based on tmRNA website at Indiana University K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D Shewmr4_2545 3-beta hydroxysteroid dehydrogenase/isomerase K22320 oleD; 2-alkyl-3-oxoalkanoate reductase [EC:1.1.1.412]
D Shewmr4_0872 aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
D Shewmr4_0536 glyceraldehyde-3-phosphate dehydrogenase K25224 gapdh; glyceraldehyde-3-phosphate dehydrogenase (arsenate-transferring) [EC:1.2.1.107]
D Shewmr4_1910 2,4-dienoyl-CoA reductase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D Shewmr4_1440 Twin-arginine translocation pathway signal K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16]
D Shewmr4_0272 Electron-transferring-flavoprotein dehydrogenase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
D Shewmr4_3411 Alcohol dehydrogenase, zinc-binding domain protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D Shewmr4_2999 NADPH-dependent FMN reductase K03206 azr; azobenzene reductase [EC:1.7.1.6]
D Shewmr4_0140 (Acyl-carrier-protein) phosphodiesterase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D Shewmr4_0321 (Acyl-carrier-protein) phosphodiesterase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D Shewmr4_0800 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-]
D Shewmr4_3431 cytochrome c, class I K19713 tsdA; thiosulfate dehydrogenase [EC:1.8.2.2]
D Shewmr4_2030 peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D Shewmr4_2184 peptide methionine sulfoxide reductase K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
D Shewmr4_2696 Glutathione S-transferase, N-terminal domain protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D Shewmr4_2109 oxidoreductase, molybdopterin binding K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D Shewmr4_2216 Cytochrome-c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D Shewmr4_2342 Redoxin domain protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D Shewmr4_1204 thiol peroxidase (atypical 2-Cys peroxiredoxin) K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D Shewmr4_0801 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D Shewmr4_0814 OsmC family protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D Shewmr4_3343 Dyp-type peroxidase family K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D Shewmr4_1821 nickel-dependent hydrogenase, large subunit K05922 hydB; quinone-reactive Ni/Fe-hydrogenase large subunit [EC:1.12.5.1]
D Shewmr4_1822 hydrogenase (NiFe) small subunit HydA K05927 hydA; quinone-reactive Ni/Fe-hydrogenase small subunit [EC:1.12.5.1]
D Shewmr4_3250 hydrogenases, Fe-only K00533 E1.12.7.2L; ferredoxin hydrogenase large subunit [EC:1.12.7.2]
D Shewmr4_3251 iron hydrogenase, small subunit K00534 E1.12.7.2S; ferredoxin hydrogenase small subunit [EC:1.12.7.2]
D Shewmr4_1220 Pirin domain protein domain protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D Shewmr4_0744 Pirin domain protein domain protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D Shewmr4_0055 Pirin domain protein domain protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D Shewmr4_3244 2OG-Fe(II) oxygenase K07336 K07336; PKHD-type hydroxylase [EC:1.14.11.-]
D Shewmr4_2996 globin K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17]
D Shewmr4_1454 L-lysine 6-monooxygenase (NADPH) K27501 alcA; putrescine N-hydroxylase [EC:1.14.13.252]
D Shewmr4_0133 Ferritin, Dps family protein K02217 ftnA; ferritin [EC:1.16.3.2]
D Shewmr4_3350 oxidoreductase FAD/NAD(P)-binding domain protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D Shewmr4_2348 arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D Shewmr4_2440 ribonucleoside-triphosphate reductase class III activase subunit K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D Shewmr4_1493 pyruvate formate-lyase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Shewmr4_2831 Oxidoreductase FAD-binding domain protein K11933 hcr; NADH oxidoreductase Hcr [EC:1.-.-.-]
D Shewmr4_1121 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D Shewmr4_1170 cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D Shewmr4_3730 Radical SAM domain protein K23078 mqnK; menaquinone C8-methyltransferase [EC:2.1.1.350]
D Shewmr4_2294 transferase hexapeptide repeat containing protein K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D Shewmr4_1502 3-oxoacyl-(acyl-carrier-protein) synthase K16872 E2.3.1.207; beta-ketodecanoyl-[acyl-carrier-protein] synthase [EC:2.3.1.207]
D Shewmr4_1000 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D Shewmr4_0758 transcriptional regulator, MarR family with acetyltransferase activity K03828 yjgM; putative acetyltransferase [EC:2.3.1.-]
D Shewmr4_0328 GCN5-related N-acetyltransferase K03829 yedL; putative acetyltransferase [EC:2.3.1.-]
D Shewmr4_1219 Acetyltransferase, GNAT family K03830 yafP; putative acetyltransferase [EC:2.3.1.-]
D Shewmr4_1218 Acetyltransferase, GNAT family K03830 yafP; putative acetyltransferase [EC:2.3.1.-]
D Shewmr4_1651 leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D Shewmr4_1776 transglutaminase domain protein K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13]
D Shewmr4_1650 Arginyltransferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D Shewmr4_2548 3-Oxoacyl-(acyl-carrier-protein (ACP)) synthase III C terminal domain protein K22317 oleA; acyl-CoA:acyl-CoA alkyltransferase [EC:2.3.3.20]
D Shewmr4_1938 DTW domain containing protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D Shewmr4_3749 DTW domain containing protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D Shewmr4_2862 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D Shewmr4_1826 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D Shewmr4_0922 ApbE family protein, putative K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D Shewmr4_0942 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D Shewmr4_1591 protein of unknown function DUF299 K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D Shewmr4_3109 (Glutamate--ammonia-ligase) adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D Shewmr4_2118 RNA-directed DNA polymerase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Shewmr4_3645 protein of unknown function UPF0061 K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D Shewmr4_0579 serine/threonine protein kinase K08282 E2.7.11.1; non-specific serine/threonine protein kinase [EC:2.7.11.1]
D Shewmr4_3646 hypothetical protein K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]
D Shewmr4_0080 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D Shewmr4_0084 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D Shewmr4_0343 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D Shewmr4_2372 4-hydroxybenzoyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D Shewmr4_1067 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D Shewmr4_1463 PHP C-terminal domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D Shewmr4_1413 phosphohistidine phosphatase, SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D Shewmr4_0481 response regulator receiver modulated metal dependent phosphohydrolase K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D Shewmr4_0716 response regulator receiver modulated metal dependent phosphohydrolase K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D Shewmr4_0792 response regulator receiver modulated metal dependent phosphohydrolase K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D Shewmr4_3861 metal dependent phosphohydrolase K25135 K25135; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D Shewmr4_3060 beta-lactamase domain protein K25227 sdsA1; linear primary-alkylsulfatase [EC:3.1.6.21]
D Shewmr4_0691 Deoxyribonuclease I K01150 endA; deoxyribonuclease I [EC:3.1.21.1]
D Shewmr4_3558 Sec-independent protein translocase TatD K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D Shewmr4_1664 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D Shewmr4_1034 TatD-related deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D Shewmr4_2033 alpha/beta hydrolase fold K01175 ybfF; esterase [EC:3.1.-.-]
D Shewmr4_1995 Arabinan endo-1,5-alpha-L-arabinosidase K06113 abnA; arabinan endo-1,5-alpha-L-arabinosidase [EC:3.2.1.99]
D Shewmr4_1999 glycoside hydrolase, family 43 K06113 abnA; arabinan endo-1,5-alpha-L-arabinosidase [EC:3.2.1.99]
D Shewmr4_2135 alpha amylase, catalytic region K21575 susA; neopullulanase [EC:3.2.1.135]
D Shewmr4_0029 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D Shewmr4_2142 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D Shewmr4_3037 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D Shewmr4_0760 peptidase S45, penicillin amidase K07116 pvdQ; acyl-homoserine-lactone acylase [EC:3.5.1.97]
D Shewmr4_1625 Uncharacterized conserved protein UCP029143 K09900 E3.5.1.135; N4-acetylcytidine amidohydrolase [EC:3.5.1.135]
D Shewmr4_2792 putative endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D Shewmr4_3118 adenylate cyclase K18446 ygiF; triphosphatase [EC:3.6.1.25]
D Shewmr4_2402 maf protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D Shewmr4_3389 ATPase associated with various cellular activities, AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Shewmr4_1702 ATPase associated with various cellular activities, AAA_5 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Shewmr4_1778 ATPase associated with various cellular activities, AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Shewmr4_1406 ATPase associated with various cellular activities, AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Shewmr4_2547 alpha/beta hydrolase fold K22318 oleB; cis-3-alkyl-4-acyloxetan-2-one decarboxylase [EC:4.1.1.114]
D Shewmr4_0593 carbohydrate kinase, YjeF related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D Shewmr4_0457 peptidylprolyl isomerase, FKBP-type K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D Shewmr4_2804 peptidylprolyl isomerase, FKBP-type K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D Shewmr4_2546 AMP-dependent synthetase and ligase K22319 oleC; olefin beta-lactone synthetase [EC:6.1.3.1]
D Shewmr4_3147 UDP-N-acetylmuramate K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D Shewmr4_2191 ATP dependent DNA ligase K26441 lig; DNA ligase [EC:6.5.1.1]
D Shewmr4_2067 electron transport complex, RnfABCDGE type, D subunit K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D Shewmr4_2066 electron transport complex, RnfABCDGE type, C subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D Shewmr4_2065 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D Shewmr4_0748 NADH:ubiquinone oxidoreductase, subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1]
D Shewmr4_0936 NADH:ubiquinone oxidoreductase, subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1]
D Shewmr4_0749 NADH:ubiquinone oxidoreductase, subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1]
D Shewmr4_0937 NADH:ubiquinone oxidoreductase, subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1]
D Shewmr4_0750 NADH:ubiquinone oxidoreductase, subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1]
D Shewmr4_0938 NADH:ubiquinone oxidoreductase, subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1]
D Shewmr4_0751 NADH:ubiquinone oxidoreductase, subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1]
D Shewmr4_0939 NADH:ubiquinone oxidoreductase, subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1]
D Shewmr4_0752 NADH:ubiquinone oxidoreductase, subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D Shewmr4_0940 NADH:ubiquinone oxidoreductase, subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D Shewmr4_0753 NADH:ubiquinone oxidoreductase, subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
D Shewmr4_0941 NADH:ubiquinone oxidoreductase, subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
D Shewmr4_2011 heavy metal translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
C 99981 Carbohydrate metabolism
D Shewmr4_0731 sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A
D Shewmr4_1048 periplasmic binding protein/LacI transcriptional regulator K11930 torT; periplasmic protein TorT
D Shewmr4_1055 CBS domain containing protein K04767 acuB; acetoin utilization protein AcuB
D Shewmr4_2736 protein of unknown function DUF224, cysteine-rich region domain protein K18928 lldE; L-lactate dehydrogenase complex protein LldE
D Shewmr4_2737 4Fe-4S ferredoxin, iron-sulfur binding domain protein K18929 lldF; L-lactate dehydrogenase complex protein LldF
D Shewmr4_2738 protein of unknown function DUF162 K00782 lldG; L-lactate dehydrogenase complex protein LldG
C 99982 Energy metabolism
D Shewmr4_3714 formate dehydrogenase, subunit FdhD K02379 fdhD; FdhD protein
D Shewmr4_0108 formate dehydrogenase family accessory protein FdhD K02379 fdhD; FdhD protein
D Shewmr4_1744 ferredoxin, 2Fe-2S type, ISC system K04755 fdx; ferredoxin, 2Fe-2S
D Shewmr4_1914 ferredoxin K11107 yfaE; ferredoxin
D Shewmr4_2068 electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D Shewmr4_0921 FMN-binding domain protein K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D Shewmr4_2069 electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D Shewmr4_2064 electron transport complex, RnfABCDGE type, A subunit K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D Shewmr4_3937 flavodoxin/nitric oxide synthase K06205 mioC; MioC protein
D Shewmr4_1740 FeS cluster assembly scaffold IscU K04488 iscU; nitrogen fixation protein NifU and related proteins
D Shewmr4_0705 NapD family protein K02570 napD; periplasmic nitrate reductase NapD
D Shewmr4_1841 NapD family protein K02570 napD; periplasmic nitrate reductase NapD
D Shewmr4_2610 ferredoxin-type protein NapF K02572 napF; ferredoxin-type protein NapF
D Shewmr4_1840 periplasmic nitrate reductase NapE K02571 napE; periplasmic nitrate reductase NapE
D Shewmr4_1053 periplasmic nitrate reductase NapE K02571 napE; periplasmic nitrate reductase NapE
D Shewmr4_0486 cytochrome C biogenesis protein K04017 nrfF; formate-dependent nitrite reductase complex subunit NrfF
D Shewmr4_0491 formate-dependent nitrite reductase, NrfG protein K04018 nrfG; formate-dependent nitrite reductase complex subunit NrfG
D Shewmr4_2036 flavodoxin K03839 fldA; flavodoxin I
D Shewmr4_1844 periplasmic nitrate reductase subunit NapC K02569 napC; cytochrome c-type protein NapC
D Shewmr4_3777 NapC/NirT cytochrome c domain protein K02569 napC; cytochrome c-type protein NapC
D Shewmr4_0703 periplasmic nitrate reductase subunit NapG K02573 napG; ferredoxin-type protein NapG
D Shewmr4_0702 periplasmic nitrate reductase subunit NapH K02574 napH; ferredoxin-type protein NapH
D Shewmr4_1352 electron transfer flavoprotein beta-subunit K03521 fixA; electron transfer flavoprotein beta subunit
D Shewmr4_3764 formate-dependent nitrite reductase K04013 nrfB; cytochrome c-type protein NrfB
D Shewmr4_0492 4Fe-4S ferredoxin, iron-sulfur binding domain protein K04014 nrfC; protein NrfC
D Shewmr4_3763 Twin-arginine translocation pathway signal K04014 nrfC; protein NrfC
D Shewmr4_3762 Polysulphide reductase, NrfD K04015 nrfD; protein NrfD
D Shewmr4_0493 Polysulphide reductase, NrfD K04015 nrfD; protein NrfD
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D Shewmr4_1505 protein of unknown function DUF540 K06203 cysZ; CysZ protein
D Shewmr4_2137 Glyoxalase/bleomycin resistance protein/dioxygenase K08234 yaeR; glyoxylase I family protein
D Shewmr4_1193 Protein of unknown function UPF0001 K06997 yggS; PLP dependent protein
D Shewmr4_1527 GCN5-related N-acetyltransferase K22479 argA; N-acetyltransferase
C 99986 Glycan metabolism
D Shewmr4_1926 protein of unknown function DUF1049 K08992 lapA; lipopolysaccharide assembly protein A
D Shewmr4_1927 conserved hypothetical protein K19804 lapB; lipopolysaccharide assembly protein B
C 99987 Cofactor metabolism
D Shewmr4_0385 HemY domain protein K02498 hemY; HemY protein
D Shewmr4_3553 2-octaprenylphenol hydroxylase K03688 ubiB; ubiquinone biosynthesis protein
D Shewmr4_3552 protein of unknown function DUF1243 K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D Shewmr4_0375 protein of unknown function DUF526 K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
D Shewmr4_1062 Sterol-binding domain protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT
D Shewmr4_3833 AbgT putative transporter K12942 abgT; aminobenzoyl-glutamate transport protein
D Shewmr4_0151 AbgT putative transporter K12942 abgT; aminobenzoyl-glutamate transport protein
C 99988 Secondary metabolism
C 99999 Others
D Shewmr4_1221 DoxX family protein K15977 K15977; putative oxidoreductase
D Shewmr4_2265 Carboxylesterase K06999 K06999; phospholipase/carboxylesterase
D Shewmr4_2098 CoA-binding domain protein K09181 yfiQ; acetyltransferase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D Shewmr4_1646 cold-shock DNA-binding protein family K03704 cspA; cold shock protein
D Shewmr4_2622 cold-shock DNA-binding protein family K03704 cspA; cold shock protein
D Shewmr4_2407 cold-shock DNA-binding protein family K03704 cspA; cold shock protein
D Shewmr4_0438 regulator of RpoD, Rsd/AlgQ K07740 rsd; regulator of sigma D
D Shewmr4_3159 nitrogen regulatory protein P-II K04752 glnK; nitrogen regulatory protein P-II 2
D Shewmr4_3362 nitrogen regulatory protein P-II K04752 glnK; nitrogen regulatory protein P-II 2
D Shewmr4_3809 RNA binding S1 domain protein K06959 tex; protein Tex
C 99974 Translation
D Shewmr4_0539 RNA-metabolizing metallo-beta-lactamase K07576 K07576; metallo-beta-lactamase family protein
C 99975 Protein processing
D Shewmr4_0765 protein of unknown function DUF306, Meta and HslJ K03668 hslJ; heat shock protein HslJ
D Shewmr4_1647 ATP-dependent Clp protease adaptor protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D Shewmr4_2496 trigger factor K03545 tig; trigger factor
D Shewmr4_2108 Ferric reductase domain protein transmembrane component, N-terminal domain protein K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D Shewmr4_0105 formate dehydrogenase accessory protein FdhE K02380 fdhE; FdhE protein
D Shewmr4_0396 HupE/UreJ protein K03192 ureJ; urease accessory protein
D Shewmr4_2776 SsrA-binding protein K03664 smpB; SsrA-binding protein
D Shewmr4_1815 hydrogenase assembly chaperone hypC/hupF K04653 hypC; hydrogenase expression/formation protein HypC
D Shewmr4_1814 hydrogenase expression/formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D Shewmr4_1813 hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE
D Shewmr4_1817 (NiFe) hydrogenase maturation protein HypF K04656 hypF; hydrogenase maturation protein HypF
D Shewmr4_3624 Mg chelatase, subunit ChlI K07391 comM; magnesium chelatase family protein
D Shewmr4_1526 Prolyl 4-hydroxylase, alpha subunit K07394 K07394; SM-20-related protein
D Shewmr4_1089 putative protein-disulfide isomerase K07396 K07396; putative protein-disulfide isomerase
D Shewmr4_0627 OsmC family protein K07397 yhfA; putative redox protein
D Shewmr4_3804 HesB/YadR/YfhF-family protein K07400 nfuA; Fe/S biogenesis protein NfuA
D Shewmr4_1437 protein of unknown function DUF182 K07402 xdhC; xanthine dehydrogenase accessory factor
C 99976 Replication and repair
D Shewmr4_2143 methylated-DNA-(protein)-cysteine S-methyltransferase K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D Shewmr4_2716 5'-3' exonuclease K01146 xni; protein Xni
D Shewmr4_3597 DNA repair protein RadC K03630 radC; DNA repair protein RadC
D Shewmr4_1699 DNA repair protein RadC K03630 radC; DNA repair protein RadC
D Shewmr4_2110 protein of unknown function DUF195 K09760 rmuC; DNA recombination protein RmuC
D Shewmr4_1846 ATP-dependent endonuclease of the OLD family-like protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D Shewmr4_3685 protein of unknown function UPF0102 K07460 yraN; putative endonuclease
D Shewmr4_0137 Excinuclease ABC, C subunit domain protein K07461 K07461; putative endonuclease
D Shewmr4_0031 DNA protecting protein DprA K04096 smf; DNA processing protein
D Shewmr4_1965 Recombination protein MgsA K07478 ycaJ; putative ATPase
D Shewmr4_0033 DNA topoisomerase, type IA, zn finger domain protein K07479 yrdD; putative DNA topoisomerase
D Shewmr4_2781 Resolvase, N-terminal domain protein K14060 pinR; putative DNA-invertase from lambdoid prophage Rac
D Shewmr4_0016 transposase K07483 K07483; transposase
D Shewmr4_2116 transposase K07483 K07483; transposase
D Shewmr4_1912 transposase K07483 K07483; transposase
D Shewmr4_0435 transposase K07483 K07483; transposase
D Shewmr4_0644 transposase K07483 K07483; transposase
D Shewmr4_0665 transposase IS3/IS911 family protein K07483 K07483; transposase
D Shewmr4_1757 transposase K07483 K07483; transposase
D Shewmr4_2232 transposase IS3/IS911 family protein K07483 K07483; transposase
D Shewmr4_2390 transposase K07483 K07483; transposase
D Shewmr4_1444 transposase, IS204/IS1001/IS1096/IS1165 family protein K07485 K07485; transposase
D Shewmr4_3024 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase
D Shewmr4_1779 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase
D Shewmr4_0504 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase
D Shewmr4_0754 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase
D Shewmr4_0914 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase
D Shewmr4_2336 transposase IS200-family protein K07491 rayT; REP-associated tyrosine transposase
D Shewmr4_3010 transposase IS200-family protein K07491 rayT; REP-associated tyrosine transposase
D Shewmr4_2843 transposase IS200-family protein K07491 rayT; REP-associated tyrosine transposase
D Shewmr4_2466 transposase IS200-family protein K07491 rayT; REP-associated tyrosine transposase
D Shewmr4_2117 Integrase, catalytic region K07497 K07497; putative transposase
D Shewmr4_1911 Integrase, catalytic region K07497 K07497; putative transposase
D Shewmr4_0015 Integrase, catalytic region K07497 K07497; putative transposase
D Shewmr4_0434 Integrase, catalytic region K07497 K07497; putative transposase
D Shewmr4_0643 Integrase, catalytic region K07497 K07497; putative transposase
D Shewmr4_1756 Integrase, catalytic region K07497 K07497; putative transposase
D Shewmr4_2389 Integrase, catalytic region K07497 K07497; putative transposase
D Shewmr4_3204 Integrase, catalytic region K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D Shewmr4_2482 phage shock protein A, PspA K03969 pspA; phage shock protein A
D Shewmr4_0323 Rhodanese domain protein K03972 pspE; phage shock protein E
D Shewmr4_1391 Rhodanese domain protein K03972 pspE; phage shock protein E
D Shewmr4_2253 conserved hypothetical protein 103 K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D Shewmr4_1994 sugar (Glycoside-Pentoside-Hexuronide) transporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family
D Shewmr4_1628 acriflavin resistance protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D Shewmr4_2910 amino acid/peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D Shewmr4_3938 TGF-beta receptor, type I/II extracellular region K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D Shewmr4_1313 amino acid/peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D Shewmr4_3120 phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family
D Shewmr4_3847 sodium/proline symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D Shewmr4_2964 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D Shewmr4_1431 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D Shewmr4_0714 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D Shewmr4_0794 branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D Shewmr4_3729 Bile acid:sodium symporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family
D Shewmr4_1035 nucleoside transporter K03317 TC.CNT; concentrative nucleoside transporter, CNT family
C 99978 Cell growth
D Shewmr4_1449 intracellular septation protein A K06190 ispZ; intracellular septation protein
D Shewmr4_0398 Hemerythrin HHE cation binding domain protein K07322 ytfE; regulator of cell morphogenesis and NO signaling
D Shewmr4_2662 SpoOM family protein K06377 spo0M; sporulation-control protein
C 99993 Cell motility
D Shewmr4_3039 conserved hypothetical protein K07337 K07337; penicillin-binding protein activator
D Shewmr4_2236 pili assembly chaperone K15540 ecpD; chaperone protein EcpD
D Shewmr4_2660 Syd family protein K15723 syd; SecY interacting protein Syd
C 99995 Signaling proteins
D Shewmr4_0426 signaling modulator of AmpD, AmpE K03807 ampE; AmpE protein
D Shewmr4_1672 ProQ activator of osmoprotectant transporter ProP K03607 proQ; ProP effector
D Shewmr4_0874 UspA domain protein K06149 uspA; universal stress protein A
D Shewmr4_2015 UspA domain protein K14055 uspE; universal stress protein E
D Shewmr4_1103 UspA domain protein K14055 uspE; universal stress protein E
D Shewmr4_0306 GTP-binding protein TypA K06207 typA; GTP-binding protein
D Shewmr4_2276 anti-ECFsigma factor, ChrR K07167 chrR; putative transcriptional regulator
D Shewmr4_3313 CBS domain containing membrane protein K07168 K07168; CBS domain-containing membrane protein
D Shewmr4_1003 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D Shewmr4_0576 PhoH family protein K07175 phoH2; PhoH-like ATPase
D Shewmr4_1515 cyclic nucleotide-binding protein K07182 K07182; CBS domain-containing protein
D Shewmr4_3121 SH3 domain protein domain protein K07184 ygiM; SH3 domain protein
D Shewmr4_1041 membrane protein K07186 smp; membrane protein
D Shewmr4_3156 protein of unknown function DUF520 K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D Shewmr4_1964 outer membrane lipoprotein carrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein
D Shewmr4_3171 outer membrane lipoprotein LolB K02494 lolB; outer membrane lipoprotein LolB
D Shewmr4_1311 VacJ family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D Shewmr4_1652 17 kDa surface antigen K06077 slyB; outer membrane lipoprotein SlyB
D Shewmr4_2632 outer membrane chaperone Skp (OmpH) K06142 hlpA; outer membrane protein
D Shewmr4_1122 peptidase M23B K06194 nlpD; lipoprotein NlpD
D Shewmr4_1032 Tetratricopeptide TPR_2 repeat protein K05803 nlpI; lipoprotein NlpI
D Shewmr4_2601 OmpW family protein K07275 ompW; outer membrane protein
D Shewmr4_0777 protein of unknown function DUF481 K07283 ydiY; putative salt-induced outer membrane protein
D Shewmr4_3261 protein of unknown function DUF481 K07283 ydiY; putative salt-induced outer membrane protein
D Shewmr4_3152 Uncharacterized lipoprotein K07286 yajG; uncharacterized lipoprotein
D Shewmr4_2164 AsmA family protein K07289 asmA; AsmA protein
D Shewmr4_3463 secretion protein HlyD family protein K01993 ABC-2.TX; HlyD family secretion protein
D Shewmr4_2575 secretion protein HlyD family protein K01993 ABC-2.TX; HlyD family secretion protein
D Shewmr4_0861 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein
D Shewmr4_1485 protein of unknown function UPF0118 K11744 tqsA; AI-2 transport protein TqsA
D Shewmr4_0370 Inner membrane CreD family protein K06143 creD; inner membrane protein
D Shewmr4_0227 CcmE/CycJ protein K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D Shewmr4_0236 cytochrome C biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D Shewmr4_0233 TPR repeat-containing protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D Shewmr4_1227 conserved hypothetical protein K15539 rodZ; cytoskeleton protein RodZ
C 99994 Others
D Shewmr4_2557 phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein
D Shewmr4_0582 BFD domain protein (2Fe-2S)-binding domain protein K02192 bfd; bacterioferritin-associated ferredoxin
D Shewmr4_1829 periplasmic glucan biosynthesis protein, MdoG K03670 mdoG; periplasmic glucans biosynthesis protein
D Shewmr4_3046 periplasmic glucan biosynthesis protein, MdoG K03670 mdoG; periplasmic glucans biosynthesis protein
D Shewmr4_2353 periplasmic glucan biosynthesis protein, MdoG K03670 mdoG; periplasmic glucans biosynthesis protein
D Shewmr4_2543 Integral membrane protein TerC K05794 terC; tellurite resistance protein TerC
D Shewmr4_3405 CutA1 divalent ion tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein
D Shewmr4_0904 ApaG domain protein K06195 apaG; ApaG protein
D Shewmr4_0390 Frataxin family protein K06202 cyaY; iron-sulfur cluster assembly protein CyaY
D Shewmr4_3223 methyl-accepting chemotaxis sensory transducer K07216 hr; hemerythrin
D Shewmr4_0495 periplasmic copper-binding K07218 nosD; nitrous oxidase accessory protein
D Shewmr4_3713 DNA binding domain, excisionase family K07219 K07219; putative molybdopterin biosynthesis protein
D Shewmr4_2425 NnrS family protein K07234 K07234; uncharacterized protein involved in response to NO
D Shewmr4_3648 DsrE family protein K06039 ychN; uncharacterized protein involved in oxidation of intracellular sulfur
D Shewmr4_0494 NosL family protein K19342 nosL; copper chaperone NosL
B
B 09194 Poorly characterized
C 99996 General function prediction only
D Shewmr4_1429 Colicin V production protein K03558 cvpA; membrane protein required for colicin V production
D Shewmr4_2018 bax protein, putative K03796 bax; Bax protein
D Shewmr4_1865 Mammalian cell entry related domain protein K06192 pqiB; paraquat-inducible protein B
D Shewmr4_0525 GCN5-related N-acetyltransferase K02348 elaA; ElaA protein
D Shewmr4_2676 transport-associated K04065 osmY; hyperosmotically inducible periplasmic protein
D Shewmr4_2619 PHP C-terminal domain protein K04477 ycdX; putative hydrolase
D Shewmr4_1079 globin K06886 glbN; hemoglobin
D Shewmr4_0036 globin K06886 glbN; hemoglobin
D Shewmr4_0432 Patatin K07001 K07001; NTE family protein
D Shewmr4_2443 Patatin K07001 K07001; NTE family protein
D Shewmr4_1344 Patatin K07001 K07001; NTE family protein
D Shewmr4_2889 iron-sulfur cluster assembly accessory protein K15724 erpA; iron-sulfur cluster insertion protein
D Shewmr4_0316 tRNA-processing RNAse BN K07058 K07058; membrane protein
D Shewmr4_3404 FxsA cytoplasmic membrane protein K07113 fxsA; UPF0716 protein FxsA
D Shewmr4_3132 Fe-S metabolism associated SufE K02426 sufE; cysteine desulfuration protein SufE
D Shewmr4_1760 Rhodanese domain protein K07146 K07146; UPF0176 protein
D Shewmr4_1602 protein of unknown function DUF489 K07153 hflD; high frequency lysogenization protein
D Shewmr4_1450 ferric iron reductase K13255 fhuF; ferric iron reductase protein FhuF
D Shewmr4_3832 LemA family protein K03744 lemA; LemA protein
D Shewmr4_3036 SlyX family protein K03745 slyX; SlyX protein
D Shewmr4_0032 protein of unknown function DUF494 K03747 smg; Smg protein
D Shewmr4_2205 CreA family protein K05805 creA; CreA protein
D Shewmr4_0692 protein of unknown function DUF335, SprT K02742 sprT; SprT protein
D Shewmr4_1428 Sporulation domain protein K03749 dedD; DedD protein
D Shewmr4_3696 Sporulation domain protein K03112 damX; DamX protein
D Shewmr4_1668 Paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A
D Shewmr4_1864 integral membrane protein, PqiA family K03808 pqiA; paraquat-inducible protein A
D Shewmr4_1669 Paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A
D Shewmr4_2796 protein of unknown function DUF368 K08974 K08974; putative membrane protein
D Shewmr4_3185 membrane-flanked domain K08981 K08981; putative membrane protein
D Shewmr4_0719 conserved hypothetical protein K08984 yjdF; putative membrane protein
D Shewmr4_2478 conserved hypothetical protein 1620 K08990 ycjF; putative membrane protein
D Shewmr4_3776 protein of unknown function DUF1145 K08993 yhhL; putative membrane protein
D Shewmr4_2054 SEC-C motif domain protein K09858 K09858; SEC-C motif domain protein
D Shewmr4_2599 conserved hypothetical protein K09914 K09914; putative lipoprotein
D Shewmr4_3135 Cupin 2, conserved barrel domain protein K11312 K11312; cupin 2 domain-containing protein
D Shewmr4_2426 phosphate-starvation-inducible E K13256 psiE; protein PsiE
D Shewmr4_2692 PhnA protein K06193 phnA; protein PhnA
C 99997 Function unknown
D Shewmr4_2073 Radical SAM domain protein K06871 K06871; uncharacterized protein
D Shewmr4_3390 Radical SAM domain protein K06871 K06871; uncharacterized protein
D Shewmr4_2479 protein of unknown function DUF463, YcjX family protein K06918 K06918; uncharacterized protein
D Shewmr4_3008 protein of unknown function DUF1289 K06938 K06938; uncharacterized protein
D Shewmr4_2412 protein of unknown function DUF1289 K06938 K06938; uncharacterized protein
D Shewmr4_2550 protein of unknown function DUF1289 K06938 K06938; uncharacterized protein
D Shewmr4_0357 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein
D Shewmr4_0040 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein
D Shewmr4_1168 amine oxidase K06954 K06954; uncharacterized protein
D Shewmr4_0083 conserved hypothetical protein K06975 K06975; uncharacterized protein
D Shewmr4_0654 Succinylglutamate desuccinylase/aspartoacylase K06987 K06987; uncharacterized protein
D Shewmr4_2690 Succinylglutamate desuccinylase/aspartoacylase K06987 K06987; uncharacterized protein
D Shewmr4_2929 protein of unknown function DUF861, cupin_3 K06995 K06995; uncharacterized protein
D Shewmr4_3786 Glyoxalase/bleomycin resistance protein/dioxygenase K06996 K06996; uncharacterized protein
D Shewmr4_2415 glyoxalase family protein K06996 K06996; uncharacterized protein
D Shewmr4_2413 Glyoxalase/bleomycin resistance protein/dioxygenase K06996 K06996; uncharacterized protein
D Shewmr4_2540 Glyoxalase/bleomycin resistance protein/dioxygenase K06996 K06996; uncharacterized protein
D Shewmr4_3232 protein of unknown function UPF0227 K07000 K07000; uncharacterized protein
D Shewmr4_1727 protein of unknown function UPF0227 K07000 K07000; uncharacterized protein
D Shewmr4_1679 conserved hypothetical protein K07003 K07003; uncharacterized protein
D Shewmr4_3033 Endonuclease/exonuclease/phosphatase K07004 K07004; uncharacterized protein
D Shewmr4_1534 PKD domain containing protein K07004 K07004; uncharacterized protein
D Shewmr4_2219 sulfatase K07014 K07014; uncharacterized protein
D Shewmr4_2563 putative esterase K07017 K07017; uncharacterized protein
D Shewmr4_0736 alpha/beta hydrolase fold K07019 K07019; uncharacterized protein
D Shewmr4_2723 conserved hypothetical protein K07020 K07020; uncharacterized protein
D Shewmr4_2565 conserved hypothetical protein K07032 K07032; uncharacterized protein
D Shewmr4_3002 GPR1/FUN34/yaaH family protein K07034 K07034; uncharacterized protein
D Shewmr4_0466 protein of unknown function, zinc metallopeptidase putative K07054 K07054; uncharacterized protein
D Shewmr4_0742 conserved hypothetical protein K07070 K07070; uncharacterized protein
D Shewmr4_1483 conserved hypothetical protein K07071 K07071; uncharacterized protein
D Shewmr4_0461 TRAP transporter solute receptor, TAXI family K07080 K07080; uncharacterized protein
D Shewmr4_3107 protein of unknown function DUF897 K07086 K07086; uncharacterized protein
D Shewmr4_0447 permease K07089 K07089; uncharacterized protein
D Shewmr4_0534 permease K07089 K07089; uncharacterized protein
D Shewmr4_0060 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Shewmr4_2471 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Shewmr4_3441 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Shewmr4_2333 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Shewmr4_2451 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Shewmr4_2939 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Shewmr4_1997 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Shewmr4_2863 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Shewmr4_1942 Twin-arginine translocation pathway signal K07093 K07093; uncharacterized protein
D Shewmr4_3311 hypoxanthine-guanine phosphoribosyltransferase K07101 K07101; uncharacterized protein
D Shewmr4_0109 protein of unknown function DUF395, YeeE/YedE K07112 K07112; uncharacterized protein
D Shewmr4_3341 NAD-dependent epimerase/dehydratase K07118 K07118; uncharacterized protein
D Shewmr4_3684 LppC family lipoprotein K07121 K07121; uncharacterized protein
D Shewmr4_3510 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein
D Shewmr4_0619 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein
D Shewmr4_0470 conserved hypothetical protein K07133 K07133; uncharacterized protein
D Shewmr4_3671 conserved hypothetical protein K07136 K07136; uncharacterized protein
D Shewmr4_2870 conserved hypothetical radical SAM protein K07139 K07139; uncharacterized protein
D Shewmr4_2799 protein of unknown function DUF405 K07148 K07148; uncharacterized protein
D Shewmr4_2274 peptidase S16, lon domain protein K07157 K07157; uncharacterized protein
D Shewmr4_3941 protein of unknown function DUF37 K08998 K08998; uncharacterized protein
D Shewmr4_2906 GatB/Yqey domain protein K09117 K09117; uncharacterized protein
D Shewmr4_1190 conserved hypothetical protein K09131 K09131; uncharacterized protein
D Shewmr4_0986 protein of unknown function DUF493 K09158 K09158; uncharacterized protein
D Shewmr4_2170 protein of unknown function UPF0153 K09160 K09160; uncharacterized protein
D Shewmr4_1169 protein of unknown function DUF1365 K09701 K09701; uncharacterized protein
D Shewmr4_3317 protein of unknown function DUF985 K09705 K09705; uncharacterized protein
D Shewmr4_1766 conserved hypothetical protein K09707 K09707; uncharacterized protein
D Shewmr4_0129 protein of unknown function DUF333 K09712 K09712; uncharacterized protein
D Shewmr4_3273 protein of unknown function DUF342 K09749 K09749; uncharacterized protein
D Shewmr4_1560 protein of unknown function DUF188 K09768 K09768; uncharacterized protein
D Shewmr4_1448 YCII-related K09780 K09780; uncharacterized protein
D Shewmr4_0975 protein of unknown function DUF808 K09781 K09781; uncharacterized protein
D Shewmr4_1570 protein of unknown function DUF444 K09786 K09786; uncharacterized protein
D Shewmr4_2256 protein of unknown function DUF454 K09790 K09790; uncharacterized protein
D Shewmr4_2420 protein of unknown function DUF343 K09791 K09791; uncharacterized protein
D Shewmr4_2013 conserved hypothetical protein K09792 K09792; uncharacterized protein
D Shewmr4_3506 protein of unknown function DUF465 K09794 K09794; uncharacterized protein
D Shewmr4_1244 protein of unknown function DUF465 K09794 K09794; uncharacterized protein
D Shewmr4_1395 protein of unknown function DUF541 K09797 K09797; uncharacterized protein
D Shewmr4_0042 protein of unknown function DUF610, YibQ K09798 K09798; uncharacterized protein
D Shewmr4_2774 protein of unknown function UPF0125 K09801 K09801; uncharacterized protein
D Shewmr4_3450 protein of unknown function DUF541 K09807 K09807; uncharacterized protein
D Shewmr4_0943 protein of unknown function DUF539 K05952 K05952; uncharacterized protein
D Shewmr4_1555 conserved hypothetical protein K00243 K00243; uncharacterized protein
D Shewmr4_1866 protein of unknown function DUF330 K09857 K09857; uncharacterized protein
D Shewmr4_3038 Tetratricopeptide TPR_2 repeat protein K09859 K09859; uncharacterized protein
D Shewmr4_2963 protein of unknown function DUF328 K09861 K09861; uncharacterized protein
D Shewmr4_0415 protein of unknown function DUF329 K09862 K09862; uncharacterized protein
D Shewmr4_1108 protein of unknown function DUF416 K09891 K09891; uncharacterized protein
D Shewmr4_3909 protein of unknown function DUF414 K09894 K09894; uncharacterized protein
D Shewmr4_3334 yecA family protein K09895 K09895; uncharacterized protein
D Shewmr4_2194 protein of unknown function DUF413 K09897 K09897; uncharacterized protein
D Shewmr4_0735 protein of unknown function UPF0270 K09898 K09898; uncharacterized protein
D Shewmr4_1492 protein of unknown function DUF412 K09899 K09899; uncharacterized protein
D Shewmr4_2172 protein of unknown function DUF709 K09902 K09902; uncharacterized protein
D Shewmr4_2218 protein of unknown function DUF1414 K09904 K09904; uncharacterized protein
D Shewmr4_2211 protein of unknown function DUF991 K09907 K09907; uncharacterized protein
D Shewmr4_1523 conserved hypothetical protein K09909 K09909; uncharacterized protein
D Shewmr4_2473 conserved hypothetical protein K09909 K09909; uncharacterized protein
D Shewmr4_0656 Uncharacterized conserved protein UCP006287 K09910 K09910; uncharacterized protein
D Shewmr4_1930 conserved hypothetical protein K09912 K09912; uncharacterized protein
D Shewmr4_1554 protein of unknown function DUF480 K09915 K09915; uncharacterized protein
D Shewmr4_1907 protein of unknown function DUF1315 K09916 K09916; uncharacterized protein
D Shewmr4_1670 YebG family protein K09918 K09918; uncharacterized protein
D Shewmr4_2296 protein of unknown function DUF482 K09919 K09919; uncharacterized protein
D Shewmr4_3234 protein of unknown function DUF1249 K09920 K09920; uncharacterized protein
D Shewmr4_0393 protein of unknown function DUF484 K09921 K09921; uncharacterized protein
D Shewmr4_2821 protein of unknown function DUF486 K09922 K09922; uncharacterized protein
D Shewmr4_1182 protein of unknown function DUF469 K09923 K09923; uncharacterized protein
D Shewmr4_0686 protein of unknown function DUF469 K09923 K09923; uncharacterized protein
D Shewmr4_2010 conserved hypothetical protein K09926 K09926; uncharacterized protein
D Shewmr4_0372 protein of unknown function DUF1006 K09927 K09927; uncharacterized protein
D Shewmr4_2424 conserved hypothetical protein K09928 K09928; uncharacterized protein
D Shewmr4_2258 conserved hypothetical protein K09929 K09929; uncharacterized protein
D Shewmr4_2259 protein of unknown function DUF692 K09930 K09930; uncharacterized protein
D Shewmr4_0971 protein of unknown function DUF692 K09930 K09930; uncharacterized protein
D Shewmr4_3267 conserved hypothetical protein K09937 K09937; uncharacterized protein
D Shewmr4_1575 conserved hypothetical protein K09938 K09938; uncharacterized protein
D Shewmr4_1010 conserved hypothetical protein K09939 K09939; uncharacterized protein
D Shewmr4_0270 conserved hypothetical protein K09940 K09940; uncharacterized protein
D Shewmr4_2568 protein of unknown function DUF1415 K09941 K09941; uncharacterized protein
D Shewmr4_3222 protein of unknown function DUF1508 K09946 K09946; uncharacterized protein
D Shewmr4_1216 conserved hypothetical protein K09954 K09954; uncharacterized protein
D Shewmr4_1993 protein of unknown function DUF1680 K09955 K09955; uncharacterized protein
D Shewmr4_2602 protein of unknown function DUF925 K09962 K09962; uncharacterized protein
D Shewmr4_0557 GumN family protein K09973 K09973; uncharacterized protein
D Shewmr4_1335 protein of unknown function DUF886 K09975 K09975; uncharacterized protein
D Shewmr4_1789 Uncharacterized conserved protein UCP025560 K09978 K09978; uncharacterized protein
D Shewmr4_3113 conserved hypothetical protein K09980 K09980; uncharacterized protein
D Shewmr4_0238 conserved hypothetical protein K09983 K09983; uncharacterized protein
D Shewmr4_1594 protein of unknown function DUF1285 K09986 K09986; uncharacterized protein
D Shewmr4_3119 protein of unknown function DUF47 K07220 K07220; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 9, 2024