+D GENES KO
#
KEGG Orthology (KO) - Streptococcus intermedius B196
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:sib00010]
D SIR_0864 glcK; glucokinase putative K25026 glk; glucokinase [EC:2.7.1.2]
D SIR_0155 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D SIR_0534 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D SIR_0917 putative fructose-1,6-bisphosphatase III K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D SIR_1382 fba; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D SIR_1893 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D SIR_1026 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D SIR_0213 gap; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D SIR_1676 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D SIR_1767 gpm; putative phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D SIR_0426 gpmA; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D SIR_0832 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D SIR_0535 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D SIR_0920 ppdK; pyruvate phosphate, orthophosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D SIR_0813 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D SIR_0086 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D SIR_1424 adhP; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D SIR_0076 galM; putative aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D SIR_0574 pgm; putative phosphoglucomutase/phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SIR_0506 putative phosphoglucomutase/phosphomannomutase protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SIR_1242 pckA; putative phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D SIR_1126 celA; 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D SIR_1495 beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D SIR_0281 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D SIR_0349 glucose-specific enzyme K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D SIR_1769 putative PTS enzyme K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
C 00020 Citrate cycle (TCA cycle)
D SIR_1242 pckA; putative phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
C 00030 Pentose phosphate pathway [PATH:sib00030]
D SIR_0155 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D SIR_0593 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D SIR_1094 3-carboxymuconate cyclase K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D SIR_0347 gnd; 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D SIR_0204 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D SIR_1650 tkt; putative transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D SIR_1021 rpiA; ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D SIR_0851 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D SIR_0574 pgm; putative phosphoglucomutase/phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SIR_0506 putative phosphoglucomutase/phosphomannomutase protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SIR_0041 prs1; putative ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D SIR_0565 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D SIR_1545 putative 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D SIR_1544 carbohydrate kinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D SIR_1382 fba; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D SIR_0917 putative fructose-1,6-bisphosphatase III K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D SIR_0534 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:sib00040]
D SIR_1692 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D SIR_1655 ulaD; putative 3-keto-L-gulonate-6-phosphate decarboxylase K03078 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]
D SIR_1654 sga; putative L-xylulose 5-phosphate 3-epimerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D SIR_1653 araD; putative L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D SIR_0204 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
C 00051 Fructose and mannose metabolism [PATH:sib00051]
D SIR_1502 scrK; putative fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D SIR_1492 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D SIR_0534 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D SIR_0917 putative fructose-1,6-bisphosphatase III K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D SIR_0510 fruB; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D SIR_1382 fba; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D SIR_1893 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D SIR_1026 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D SIR_0511 fruA; putative PTS system, fructose-specific enzyme IIABC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D SIR_0073 putative PTS system, mannose-specific IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D SIR_1425 manL; putative phosphotransferase system, mannose-specific EIIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D SIR_1426 manM; PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D SIR_1630 phosphotransferase system, IIC component K02795 manY; mannose PTS system EIIC component
D SIR_0071 putative PTS phosphotransferase system sugar-specific EIIC component K02795 manY; mannose PTS system EIIC component
D SIR_1427 manN; PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component
D SIR_0072 putative mannose permease IID component K02796 manZ; mannose PTS system EIID component
C 00052 Galactose metabolism [PATH:sib00052]
D SIR_0076 galM; putative aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D SIR_0669 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D SIR_0671 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D SIR_0937 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D SIR_1892 galE1; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D SIR_1692 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D SIR_0574 pgm; putative phosphoglucomutase/phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SIR_0506 putative phosphoglucomutase/phosphomannomutase protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SIR_0864 glcK; glucokinase putative K25026 glk; glucokinase [EC:2.7.1.2]
D SIR_0448 lacZ; beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D SIR_0069 putative beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D SIR_0447 lacC; fructose-1-phosphate/tagatose-6-phosphate kinase-like protein K00917 lacC; tagatose 6-phosphate kinase [EC:2.7.1.144]
D SIR_0534 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D SIR_0075 lacD; tagatose 1,6-diphosphate aldolase K01635 lacD; tagatose 1,6-diphosphate aldolase [EC:4.1.2.40]
D SIR_0440 lacD1; tagatose 1,6-diphosphate aldolase K01635 lacD; tagatose 1,6-diphosphate aldolase [EC:4.1.2.40]
D SIR_0442 lacB; putative galactose-6-phosphate isomerase subunit LacB K01819 E5.3.1.26; galactose-6-phosphate isomerase [EC:5.3.1.26]
D SIR_0443 lacA; putative galactose-6-phosphate isomerase subunit LacA K01819 E5.3.1.26; galactose-6-phosphate isomerase [EC:5.3.1.26]
D SIR_0452 lacG; 6-phospho-beta-galactosidase K01220 E3.2.1.85; 6-phospho-beta-galactosidase [EC:3.2.1.85]
D SIR_0450 lacF; PTS system, lactose-specific IIA component K02786 lacF; lactose PTS system EIIA component [EC:2.7.1.207]
D SIR_0451 lacE; PTS system, lactose-specific IIBC component K02788 lacE; lactose PTS system EIICB component [EC:2.7.1.207]
D SIR_1504 scrB; sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D SIR_0409 beta-fructofuranosidase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D SIR_1541 PTS system, N-acetylgalactosamine-specific IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D SIR_1632 PTS system, sugar-specific IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D SIR_1539 PTS system, N-acetylgalactosamine-specific IIB component K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D SIR_1538 PTS system, N-acetylgalactosamine-specific IIC component K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D SIR_1537 PTS system, N-acetylgalactosamine-specific IID component K02747 agaE; N-acetylgalactosamine PTS system EIID component
D SIR_0074 putative sugar isomerase domain protein K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-]
C 00053 Ascorbate and aldarate metabolism [PATH:sib00053]
D SIR_1656 ptxA; putative phosphotransferase system sugar-specific EII component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D SIR_1657 putative phosphotransferase system sugar-specific EII component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D SIR_1658 sgaT; putative sugar-specific permease, SgaT/UlaA K03475 ulaA; ascorbate PTS system EIIC component
D SIR_1651 putative L-ascorbate 6-phosphate lactonase K03476 ulaG; L-ascorbate 6-phosphate lactonase [EC:3.1.1.-]
D SIR_1655 ulaD; putative 3-keto-L-gulonate-6-phosphate decarboxylase K03078 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]
D SIR_1654 sga; putative L-xylulose 5-phosphate 3-epimerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D SIR_1653 araD; putative L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
C 00500 Starch and sucrose metabolism [PATH:sib00500]
D SIR_0097 PTS system, sucrose-specific IIB component protein K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D SIR_1503 scrA; PTS system, sucrose-specific IIABC component K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D SIR_1504 scrB; sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D SIR_0409 beta-fructofuranosidase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D SIR_1692 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D SIR_1082 PTS system, IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D SIR_1122 celC1; putative PTS system, cellobiose-specific IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D SIR_0275 PTS system, IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D SIR_1081 PTS system, cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D SIR_1124 celB; PTS system, IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D SIR_0274 PTS system, lactose/cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D SIR_1080 PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D SIR_1120 celD; putative phosphotransferase (PTS) system K02761 celB; cellobiose PTS system EIIC component
D SIR_1494 PTS system, lactose/cellobiose family IIC component K02761 celB; cellobiose PTS system EIIC component
D SIR_0271 PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D SIR_0678 component of a phospotransferase system K02761 celB; cellobiose PTS system EIIC component
D SIR_1126 celA; 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D SIR_1495 beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D SIR_0281 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D SIR_0480 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D SIR_0481 glgD; glucose-1-phosphate adenylyltransferase, GlgD subunit K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D SIR_0482 glgA; glycogen synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21]
D SIR_0479 glgB; glycogen branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D SIR_1819 putative glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D SIR_0483 glgP; putative glycogen/starch phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D SIR_0743 pulA; pullulanase, type I K01200 pulA; pullulanase [EC:3.2.1.41]
D SIR_1826 pulA1; type I pullulanase K01200 pulA; pullulanase [EC:3.2.1.41]
D SIR_0857 amy; cytoplasmic alpha-amylase K01176 AMY; alpha-amylase [EC:3.2.1.1]
D SIR_1820 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D SIR_0349 glucose-specific enzyme K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D SIR_1769 putative PTS enzyme K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D SIR_0350 PTS system glucose-specific EIICBA component K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208]
D SIR_0351 hypothetical protein K06896 mapP; maltose 6'-phosphate phosphatase [EC:3.1.3.90]
D SIR_1239 putative PTS system, enzyme II K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D SIR_1238 treA; putative trehalose-6-phosphate hydrolase K01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93]
D SIR_0574 pgm; putative phosphoglucomutase/phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SIR_0506 putative phosphoglucomutase/phosphomannomutase protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SIR_0864 glcK; glucokinase putative K25026 glk; glucokinase [EC:2.7.1.2]
D SIR_0155 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D SIR_1502 scrK; putative fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:sib00520]
D SIR_1067 putative hydrolase protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D SIR_0349 glucose-specific enzyme K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D SIR_1403 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D SIR_1129 nagB; putative glucosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D SIR_1502 scrK; putative fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D SIR_1660 glmS; D-fructose-6-phosphate amidotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D SIR_0619 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D SIR_1175 glmU; putative glucosamine-1-phosphate acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D SIR_0098 N-acetylmuramic acid 6-phosphate etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D SIR_0496 murA1; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D SIR_0728 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D SIR_0638 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D SIR_0087 nanE; N-acetylmannosamine-6-phosphate 2-epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9]
D SIR_0093 putative N-acetylneuraminate lyase K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3]
D SIR_1775 nucleotide sugar dehydratase, putative K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35]
D SIR_1769 putative PTS enzyme K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D SIR_0864 glcK; glucokinase putative K25026 glk; glucokinase [EC:2.7.1.2]
D SIR_0574 pgm; putative phosphoglucomutase/phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SIR_0506 putative phosphoglucomutase/phosphomannomutase protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SIR_1692 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D SIR_0669 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D SIR_0671 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D SIR_0937 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D SIR_1892 galE1; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D SIR_0073 putative PTS system, mannose-specific IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D SIR_1425 manL; putative phosphotransferase system, mannose-specific EIIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D SIR_1426 manM; PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D SIR_1630 phosphotransferase system, IIC component K02795 manY; mannose PTS system EIIC component
D SIR_0071 putative PTS phosphotransferase system sugar-specific EIIC component K02795 manY; mannose PTS system EIIC component
D SIR_1427 manN; PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component
D SIR_0072 putative mannose permease IID component K02796 manZ; mannose PTS system EIID component
D SIR_0155 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D SIR_1492 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D SIR_0480 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D SIR_0481 glgD; glucose-1-phosphate adenylyltransferase, GlgD subunit K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:sib00620]
D SIR_0247 pfl; formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D SIR_0086 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D SIR_1424 adhP; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D SIR_1661 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D SIR_0570 pta; phosphate acetyl/butaryl transferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D SIR_0535 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D SIR_1431 accA; acetyl-CoA carboxylase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D SIR_1435 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D SIR_1433 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D SIR_1432 accD; acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D SIR_0367 acyP; acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D SIR_0813 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D SIR_0629 lguL; putative lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D SIR_1102 putative metallo-beta-lactamase superfamily protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D SIR_0584 mleS; malate dehydrogenase K22212 mleA; malolactic enzyme [EC:4.1.1.101]
D SIR_1030 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D SIR_1242 pckA; putative phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D SIR_0920 ppdK; pyruvate phosphate, orthophosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:sib00630]
D SIR_1879 putative phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D SIR_1671 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SIR_0780 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D SIR_0621 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D SIR_1545 putative 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
C 00640 Propanoate metabolism [PATH:sib00640]
D SIR_1661 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D SIR_0570 pta; phosphate acetyl/butaryl transferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D SIR_0247 pfl; formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D SIR_1431 accA; acetyl-CoA carboxylase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D SIR_1435 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D SIR_1433 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D SIR_1432 accD; acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D SIR_0813 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D SIR_1077 gldA; glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
C 00650 Butanoate metabolism [PATH:sib00650]
D SIR_0086 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D SIR_0247 pfl; formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D SIR_0244 mvaS; hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D SIR_0462 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SIR_0463 aldB; alpha-acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5]
D SIR_1468 putative dehydrogenase K00004 BDH; (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.4 1.1.1.- 1.1.1.303]
C 00660 C5-Branched dibasic acid metabolism [PATH:sib00660]
D SIR_0462 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SIR_0463 aldB; alpha-acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5]
C 00562 Inositol phosphate metabolism [PATH:sib00562]
D SIR_0553 suhB; inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D SIR_1893 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D SIR_1026 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:sib00190]
D SIR_0488 atpA; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D SIR_0490 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D SIR_0489 atpG; ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D SIR_0487 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D SIR_0491 atpC; ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D SIR_0485 atpB; ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D SIR_0486 atpF; proton-translocating ATPase b subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D SIR_0484 atpE; ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D SIR_0106 ntpA; V-type H+-transporting ATPase subunit A K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D SIR_0107 ntpB; V-type ATP synthase subunit B K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D SIR_0104 ntpC; V-type sodium ATP synthase subunit C K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C
D SIR_0108 ntpD; V-type ATP synthase subunit D K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D
D SIR_0103 ntpE; V-type H+-transporting ATPase subunit E K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E
D SIR_0105 ntpF; V-type ATP synthase subunit F K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F
D SIR_0100 hypothetical protein K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H
D SIR_0101 ntpI; V-type H+-transporting ATPase subunit I K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I
D SIR_0102 ntpK; V-type H+-transporting ATPase subunit K K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K
D SIR_1235 ppaC; putative manganese-dependent inorganic pyrophosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:sib00680]
D SIR_0780 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D SIR_0832 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D SIR_1030 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D SIR_1382 fba; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D SIR_0917 putative fructose-1,6-bisphosphatase III K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D SIR_0534 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D SIR_1661 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D SIR_0570 pta; phosphate acetyl/butaryl transferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D SIR_1767 gpm; putative phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D SIR_0426 gpmA; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D SIR_0620 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:sib00910]
D SIR_0263 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D SIR_1671 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SIR_1135 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00920 Sulfur metabolism [PATH:sib00920]
D SIR_0457 DHH subfamily 1 protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D SIR_1584 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D SIR_1271 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:sib00061]
D SIR_1431 accA; acetyl-CoA carboxylase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D SIR_1435 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D SIR_1433 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D SIR_1432 accD; acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D SIR_1440 hypothetical protein K02078 acpP; acyl carrier protein
D SIR_0045 putative acyl carrier protein K02078 acpP; acyl carrier protein
D SIR_1438 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D SIR_1441 fabH; 3-oxoacyl-(acyl carrier protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D SIR_1436 fabF; 3-oxoacyl-(acyl carrier protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D SIR_1179 fabG1; oxidoreductase, short chain dehydrogenase/reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SIR_1437 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SIR_1434 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D SIR_1439 fabK; enoyl-acyl carrier protein reductase K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
D SIR_1443 phaB; enoyl-CoA hydratase K18474 fabM; trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:5.3.3.14]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation
D SIR_0086 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D SIR_1424 adhP; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:sib00561]
D SIR_0621 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D SIR_1077 gldA; glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
D SIR_0156 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D SIR_0044 plsX; putative glycerol-3-phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D SIR_0824 putative glycerol-3-phosphate aceyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D SIR_1050 putative acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D SIR_0742 putative lipid kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D SIR_0932 glycosyl transferase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
D SIR_0933 putative glycosyl transferase K13677 dgs; 1,2-diacylglycerol-3-alpha-glucose alpha-1,2-glucosyltransferase [EC:2.4.1.208]
D SIR_1017 putative sulphatase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
C 00564 Glycerophospholipid metabolism [PATH:sib00564]
D SIR_1691 gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D SIR_0824 putative glycerol-3-phosphate aceyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D SIR_1050 putative acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D SIR_0742 putative lipid kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D SIR_0227 glycerophosphodiester phosphdiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D SIR_0298 hypothetical protein K01521 cdh; CDP-diacylglycerol pyrophosphatase [EC:3.6.1.26]
D SIR_1647 cdsA; putative phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D SIR_1884 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D SIR_1795 cls; putative cardiolipin synthetase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism [PATH:sib00600]
D SIR_0448 lacZ; beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D SIR_0015 nanA; neuraminidase A protein K01186 NEU1; sialidase-1 [EC:3.2.1.18]
D SIR_1067 putative hydrolase protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:sib00230]
D SIR_1174 NUDIX family hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D SIR_0574 pgm; putative phosphoglucomutase/phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SIR_0506 putative phosphoglucomutase/phosphomannomutase protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SIR_0041 prs1; putative ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D SIR_0565 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D SIR_0049 purF; putative amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D SIR_0060 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D SIR_0051 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D SIR_0047 purL; putative phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D SIR_0050 purM; putative phosphoribosylaminoimidazole synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D SIR_0062 purK; phosphoribosylaminoimidazole carboxylase ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D SIR_0061 purE; phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D SIR_0046 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D SIR_0067 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D SIR_0053 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D SIR_0503 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D SIR_1020 punA; purine nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D SIR_1019 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D SIR_0013 hpt; hypoxanthine-guanine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D SIR_1890 guaB; inosine-5-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D SIR_0874 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D SIR_0374 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D SIR_0788 xpt; xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D SIR_0775 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D SIR_0789 guaC; guanosine monophosphate reductase K00364 guaC; GMP reductase [EC:1.7.1.7]
D SIR_1300 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D SIR_1044 nrdE; ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D SIR_1046 nrdF; ribonucleotide-diphosphate reductase, subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D SIR_1792 nrdD; anaerobic ribonucleoside triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D SIR_1614 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D SIR_0567 GTP pyrophosphokinase K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]
D SIR_0149 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D SIR_1739 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D SIR_1135 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00240 Pyrimidine metabolism [PATH:sib00240]
D SIR_0865 carB; carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D SIR_0866 carA; carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D SIR_0867 pyrB; aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D SIR_0726 pyrC; dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D SIR_0695 pyrD; dihydroorotate dehydrogenase 1B K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D SIR_0694 dihydroorotate dehydrogenase electron transfer subunit K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit
D SIR_0264 pyrDa; dihydroorotate dehydrogenase A K00226 pyrD; dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
D SIR_0697 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D SIR_0696 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D SIR_1161 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D SIR_0874 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D SIR_1514 pyrG2; CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D SIR_0625 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D SIR_1761 hypothetical protein K00876 udk; uridine kinase [EC:2.7.1.48]
D SIR_0633 udk; uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D SIR_1859 HAD superfamily hydrolase K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-]
D SIR_1226 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D SIR_0869 pyrR; pyrimidine regulatory protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D SIR_0852 pdp; pyrimidine-nucleoside phosphorylase K00756 pdp; pyrimidine-nucleoside phosphorylase [EC:2.4.2.2]
D SIR_1792 nrdD; anaerobic ribonucleoside triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D SIR_1044 nrdE; ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D SIR_1046 nrdF; ribonucleotide-diphosphate reductase, subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D SIR_0826 putative ComE operon protein 2 family K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D SIR_1216 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D SIR_1689 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D SIR_0784 tdk; thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D SIR_0896 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D SIR_0340 putative short chain dehydrogenase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:sib00250]
D SIR_1478 ansB; asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D SIR_0840 asp; aspartate aminotransferase K22457 E2.6.1.14; asparagine---oxo-acid transaminase [EC:2.6.1.14]
D SIR_1475 aspC; putative aminotransferase AlaT K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D SIR_0703 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D SIR_0149 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D SIR_0067 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D SIR_0867 pyrB; aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D SIR_0263 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D SIR_1671 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SIR_0865 carB; carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D SIR_0866 carA; carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D SIR_1660 glmS; D-fructose-6-phosphate amidotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D SIR_0049 purF; putative amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:sib00260]
D SIR_1444 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D SIR_0643 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D SIR_0675 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D SIR_0676 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D SIR_0109 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D SIR_0780 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D SIR_0621 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D SIR_1767 gpm; putative phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D SIR_0426 gpmA; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D SIR_0620 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D SIR_0340 putative short chain dehydrogenase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D SIR_1877 sdaB; putative L-serine dehydratase beta subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D SIR_1878 sdaA; L-serine dehydratase alpha subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D SIR_0065 putative aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
C 00270 Cysteine and methionine metabolism [PATH:sib00270]
D SIR_1584 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D SIR_1271 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D SIR_0662 putative cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D SIR_1228 lcd; betaC-S lyase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D SIR_0296 methyltransferase protein K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D SIR_0727 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D SIR_1172 pfs; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D SIR_0266 chlorohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D SIR_0657 hypothetical protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D SIR_1302 luxS; S-ribosylhomocysteinase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D SIR_1444 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D SIR_0643 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D SIR_0675 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D SIR_0820 amino acid transferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D SIR_0813 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D SIR_0065 putative aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D SIR_1877 sdaB; putative L-serine dehydratase beta subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D SIR_1878 sdaA; L-serine dehydratase alpha subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
C 00280 Valine, leucine and isoleucine degradation [PATH:sib00280]
D SIR_0820 amino acid transferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D SIR_0244 mvaS; hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:sib00290]
D SIR_0462 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SIR_0820 amino acid transferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D SIR_1475 aspC; putative aminotransferase AlaT K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
C 00300 Lysine biosynthesis [PATH:sib00300]
D SIR_0675 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D SIR_1444 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D SIR_0643 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D SIR_0644 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D SIR_0514 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D SIR_1685 dapD; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D SIR_1452 putative succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D SIR_0371 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D SIR_0042 araT; putative aminotransferase, AraT K00841 patA; aminotransferase [EC:2.6.1.-]
D SIR_1684 hipO; putative N-acetyldiaminopimelate deacetylase K05823 dapL; N-acetyldiaminopimelate deacetylase [EC:3.5.1.47]
D SIR_0430 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation
D SIR_0065 putative aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
C 00220 Arginine biosynthesis [PATH:sib00220]
D SIR_1136 arcB; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D SIR_1137 arcA; arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6]
D SIR_1671 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SIR_0263 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D SIR_1135 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D SIR_1475 aspC; putative aminotransferase AlaT K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D SIR_0134 putative acetyltransferase K22477 argO; N-acetylglutamate synthase [EC:2.3.1.1]
C 00330 Arginine and proline metabolism
C 00340 Histidine metabolism
D SIR_0283 histidinol-phosphatase K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
C 00350 Tyrosine metabolism
D SIR_0086 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D SIR_1424 adhP; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00360 Phenylalanine metabolism
C 00380 Tryptophan metabolism
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:sib00400]
D SIR_1482 aroG; putative phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D SIR_1013 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D SIR_1015 aroD; 3-dehydroquinate dehydratase, type I K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10]
D SIR_1006 aroK; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D SIR_1007 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D SIR_1012 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D SIR_0898 putative chorismate mutase K04516 AROA1; chorismate mutase [EC:5.4.99.5]
D SIR_1009 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D SIR_1005 pheA; prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism
C 00430 Taurine and hypotaurine metabolism [PATH:sib00430]
D SIR_0703 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D SIR_0570 pta; phosphate acetyl/butaryl transferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D SIR_1661 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:sib00450]
D SIR_0662 putative cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D SIR_1228 lcd; betaC-S lyase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D SIR_0296 methyltransferase protein K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D SIR_1361 sufS; cysteine desulfurase, SufS subfamily K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D SIR_1354 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D SIR_1199 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:sib00460]
D SIR_1478 ansB; asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D SIR_0780 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:sib00470]
D SIR_1480 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D SIR_0429 ddl; D-alanyl-alanine synthetase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D SIR_1855 dltA; putative D-alanine-poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D SIR_1853 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13]
D SIR_0065 putative aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D SIR_0373 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D SIR_1254 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D SIR_0371 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:sib00480]
D SIR_0508 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D SIR_0522 gor; glutathione reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D SIR_0347 gnd; 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D SIR_0593 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D SIR_1548 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:sib00511]
D SIR_0015 nanA; neuraminidase A protein K01186 NEU1; sialidase-1 [EC:3.2.1.18]
D SIR_0448 lacZ; beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D SIR_1067 putative hydrolase protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D SIR_1069 putative hydrolase protein K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24]
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis [PATH:sib00542]
D SIR_1364 rgpG; putative glycosyl transferase N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:sib00541]
D SIR_1692 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D SIR_0937 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D SIR_1892 galE1; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D SIR_0940 rmlA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D SIR_0938 cpsN; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D SIR_0939 cpsM; dTDP-4-keto-6-deoxyglucose-3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D SIR_0958 rmlD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D SIR_1492 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D SIR_1175 glmU; putative glucosamine-1-phosphate acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D SIR_1783 extracellular polysaccharide biosynthesis K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
C 00550 Peptidoglycan biosynthesis [PATH:sib00550]
D SIR_0496 murA1; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D SIR_0728 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D SIR_0638 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D SIR_0360 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D SIR_1254 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D SIR_0429 ddl; D-alanyl-alanine synthetase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D SIR_0430 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D SIR_0710 dgkA; diacylglycerol kinase K00887 dgkA; undecaprenol kinase [EC:2.7.1.66]
D SIR_1648 uppS; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D SIR_1366 bacA; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D SIR_0387 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D SIR_1388 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D SIR_1253 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D SIR_1348 pbp1a; penicillin binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D SIR_0124 penicillin-binding protein K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4]
D SIR_1359 dacA; penicillin-binding protein 3 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D SIR_1231 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K05362 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [EC:6.3.2.7]
D SIR_0616 Mur ligase family protein K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
D SIR_0615 hypothetical protein K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
D SIR_1111 murM; FemAB family protein K05363 murM; serine/alanine adding enzyme [EC:2.3.2.10]
D SIR_1112 murN; FemAB family protein K12554 murN; alanine adding enzyme [EC:2.3.2.-]
D SIR_1679 putative penicillin binding protein IIB K03693 pbp1b; penicillin-binding protein 1B
D SIR_0427 pbp2b; putative penicillin binding protein 2B K00687 pbp2B; penicillin-binding protein 2B
D SIR_1389 pbp2X; penicillin-binding protein 2/putative cell division protein FtsI K12556 pbp2X; penicillin-binding protein 2X
C 00552 Teichoic acid biosynthesis [PATH:sib00552]
D SIR_1366 bacA; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D SIR_0387 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D SIR_1364 rgpG; putative glycosyl transferase N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D SIR_1855 dltA; putative D-alanine-poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D SIR_1853 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13]
D SIR_1854 dltB; putative membrane protein involved in D-alanine export K03739 dltB; membrane protein involved in D-alanine export
D SIR_1852 dltD; putative D-alanine transfer protein DltD K03740 dltD; D-alanine transfer protein
D SIR_1418 putative transcriptional regulator LytR K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D SIR_1004 putative transcriptional regulator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D SIR_1787 cpsA; Transcriptional regulator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D SIR_1017 putative sulphatase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
D SIR_0932 glycosyl transferase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
D SIR_1783 extracellular polysaccharide biosynthesis K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
D SIR_1779 licD; putative LicD-family phosphotransferase K07271 licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:sib00543]
D SIR_1364 rgpG; putative glycosyl transferase N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D SIR_1584 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:sib00730]
D SIR_0916 putative cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SIR_0564 csdA; putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SIR_0915 thiI; thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D SIR_0203 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D SIR_0205 thiamine pyrophosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2]
D SIR_1739 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:sib00740]
D SIR_1423 putative hydrolase K21064 ycsE; 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.104]
D SIR_0550 ribF; bifunctional riboflavin kinase/FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D SIR_1174 NUDIX family hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:sib00750]
D SIR_1519 thiD; phosphomethylpyrimidine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D SIR_0109 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:sib00760]
D SIR_1351 putative nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D SIR_1020 punA; purine nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D SIR_1019 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D SIR_1462 nadD; nicotinic acid mononucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D SIR_1350 nadE; NAD synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D SIR_0831 NAD-dependent deacetylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D SIR_0568 ppnK; inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:sib00770]
D SIR_0462 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SIR_0740 panE; 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D SIR_0854 coaA; pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D SIR_0577 coaB; phosphopantothenate-cysteine ligase K21977 coaB; phosphopantothenate---cysteine ligase (CTP) [EC:6.3.2.5]
D SIR_0576 coaC; phosphopantothenoylcysteine decarboxylase K01598 PPCDC; phosphopantothenoylcysteine decarboxylase [EC:4.1.1.36]
D SIR_1265 coaD; phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D SIR_0714 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D SIR_1481 acpS; Holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D SIR_0820 amino acid transferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00780 Biotin metabolism [PATH:sib00780]
D SIR_1436 fabF; 3-oxoacyl-(acyl carrier protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D SIR_1179 fabG1; oxidoreductase, short chain dehydrogenase/reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SIR_1437 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SIR_1434 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D SIR_0667 birA; biotin--protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism
C 00790 Folate biosynthesis [PATH:sib00790]
D SIR_0540 hypothetical protein K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D SIR_0895 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D SIR_1643 putative dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D SIR_1797 folC; dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
C 00670 One carbon pool by folate [PATH:sib00670]
D SIR_0895 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D SIR_0579 fhs; formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D SIR_0403 folD; methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D SIR_0780 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D SIR_0051 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D SIR_0053 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D SIR_1297 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D SIR_0896 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D SIR_1683 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:sib00860]
D SIR_0635 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:sib00900]
D SIR_0244 mvaS; hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D SIR_0243 putative hydroxymethylglutaryl-CoA reductase K00054 mvaA; hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88]
D SIR_0239 mvk; mevalonate kinase K00869 MVK; mevalonate kinase [EC:2.7.1.36]
D SIR_0241 phosphomevalonate kinase K00938 E2.7.4.2; phosphomevalonate kinase [EC:2.7.4.2]
D SIR_0240 mvaD; diphosphomevalonate decarboxylase K01597 MVD; diphosphomevalonate decarboxylase [EC:4.1.1.33]
D SIR_0242 fni; isopentenyl-diphosphate delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D SIR_0414 putative farnesyl diphosphate synthase/geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D SIR_1648 uppS; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D SIR_1650 tkt; putative transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:sib00523]
D SIR_0940 rmlA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D SIR_0938 cpsN; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D SIR_0939 cpsM; dTDP-4-keto-6-deoxyglucose-3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D SIR_0958 rmlD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D SIR_0938 cpsN; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis [PATH:sib00261]
D SIR_1444 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D SIR_0643 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D SIR_0644 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D SIR_0514 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:sib00521]
D SIR_0864 glcK; glucokinase putative K25026 glk; glucokinase [EC:2.7.1.2]
D SIR_0574 pgm; putative phosphoglucomutase/phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SIR_0506 putative phosphoglucomutase/phosphomannomutase protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SIR_0553 suhB; inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D SIR_0940 rmlA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D SIR_0938 cpsN; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D SIR_0939 cpsM; dTDP-4-keto-6-deoxyglucose-3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D SIR_0958 rmlD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D SIR_0864 glcK; glucokinase putative K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:sib00525]
D SIR_0940 rmlA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D SIR_0938 cpsN; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis
D SIR_1009 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
C 00333 Prodigiosin biosynthesis
D SIR_1438 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D SIR_1179 fabG1; oxidoreductase, short chain dehydrogenase/reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SIR_1437 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D SIR_1440 hypothetical protein K02078 acpP; acyl carrier protein
D SIR_0045 putative acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites
D SIR_0727 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation
D SIR_0785 xylH; putative tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00627 Aminobenzoate degradation
D SIR_0367 acyP; acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:sib00625]
D SIR_1424 adhP; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D SIR_0086 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
D SIR_0785 xylH; putative tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D SIR_0785 xylH; putative tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00626 Naphthalene degradation [PATH:sib00626]
D SIR_1424 adhP; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D SIR_0086 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:sib03020]
D SIR_1678 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D SIR_1677 rpoC; DNA-directed RNA polymerase, subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D SIR_1734 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D SIR_1299 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D SIR_1515 rpoE; DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:sib03010]
D SIR_0816 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D SIR_0129 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D SIR_1753 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D SIR_1868 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D SIR_1742 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D SIR_0304 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D SIR_0211 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D SIR_1745 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D SIR_1576 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D SIR_1760 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D SIR_1735 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D SIR_0210 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D SIR_1736 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D SIR_1746 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D SIR_1588 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D SIR_0744 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D SIR_1750 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D SIR_0306 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D SIR_1755 ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19
D SIR_0855 rpsT; putative 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D SIR_0760 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D SIR_1162 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D SIR_1756 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D SIR_1759 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D SIR_1758 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D SIR_1747 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D SIR_1744 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D SIR_0648 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D SIR_1872 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D SIR_0647 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D SIR_1163 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D SIR_1577 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D SIR_1749 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D SIR_1741 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D SIR_1752 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D SIR_1733 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D SIR_1743 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D SIR_0863 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D SIR_0628 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D SIR_0913 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D SIR_1754 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D SIR_1757 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D SIR_1748 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D SIR_0911 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D SIR_1378 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D SIR_1751 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D SIR_0456 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D SIR_1831 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D SIR_1832 rpmG3; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D SIR_0125 rpmG1; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D SIR_0716 rpmG2; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D SIR_0163 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D SIR_0627 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D SIR_1737 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D SIR_0017 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SIR_0317 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SIR_1731 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SIR_1449 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SIR_0019 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SIR_1729 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SIR_1447 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SIR_0319 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SIR_0020 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SIR_1728 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SIR_1446 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SIR_0320 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:sib00970]
D SIR_0018 trnaA; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SIR_1448 trnaA; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SIR_1730 trnaA; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SIR_0318 trnaA; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SIR_0028 trnaR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SIR_0328 trnaR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SIR_0329 trnaR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SIR_0815 trnaR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SIR_0862 trnaR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SIR_1902 trnaR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SIR_1445 trnaN; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SIR_1897 trnaN; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SIR_0022 trnaD; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D SIR_0322 trnaD; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D SIR_0128 trnaC; tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D SIR_0817 trnaQ; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D SIR_1717 trnaQ; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D SIR_1724 trnaE; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SIR_1898 trnaE; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SIR_0035 trnaG; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SIR_1726 trnaG; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SIR_0326 trnaG; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SIR_0026 trnaG; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SIR_1718 trnaH; tRNA-His K14226 tRNA-His; tRNA His
D SIR_1725 trnaI; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D SIR_0036 trnaI; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D SIR_0202 trnaL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SIR_0027 trnaL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SIR_0327 trnaL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SIR_1383 trnaL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SIR_1386 trnaL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SIR_1716 trnaL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SIR_0024 trnaL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SIR_0324 trnaL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SIR_1621 trnaK; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SIR_0023 trnaK; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SIR_0323 trnaK; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SIR_0031 trnaM; tRNA-Met K14230 tRNA-Met; tRNA Met
D SIR_0030 trnaM; tRNA-Met K14230 tRNA-Met; tRNA Met
D SIR_0033 trnaM; tRNA-Met K14230 tRNA-Met; tRNA Met
D SIR_1722 trnaM; tRNA-Met K14230 tRNA-Met; tRNA Met
D SIR_0034 trnaF; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D SIR_1721 trnaF; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D SIR_0029 trnaP; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D SIR_0330 trnaP; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D SIR_0032 trnaS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SIR_1723 trnaS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SIR_0037 trnaS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SIR_0501 trnaS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SIR_0201 trnaS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SIR_0025 trnaT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SIR_0325 trnaT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SIR_0705 trnaT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SIR_1381 trnaT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SIR_1719 trnaW; tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D SIR_0818 trnaY; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D SIR_1720 trnaY; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D SIR_0021 trnaV; tRNA-Val K14237 tRNA-Val; tRNA Val
D SIR_0321 trnaV; tRNA-Val K14237 tRNA-Val; tRNA Val
D SIR_1727 trnaV; tRNA-Val K14237 tRNA-Val; tRNA Val
D SIR_1686 gltX; glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D SIR_1470 gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D SIR_1469 gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D SIR_1471 gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D SIR_1114 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D SIR_1828 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SIR_1472 aspS1; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SIR_0838 asnC; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D SIR_1398 glyQ; glycyl-tRNA synthetase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D SIR_1397 glyS; glycyl-tRNA synthetase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D SIR_1090 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D SIR_1429 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D SIR_1582 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D SIR_1199 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D SIR_1297 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D SIR_1276 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D SIR_1607 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D SIR_1244 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D SIR_1055 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D SIR_1816 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D SIR_1645 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D SIR_1830 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D SIR_0517 pheS; phenylalanyl-tRNA synthetase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D SIR_0520 pheT; phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D SIR_1680 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D SIR_1891 trpS; tyryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:sib03060]
D SIR_1740 secY; preprotein translocase subunit K03076 secY; preprotein translocase subunit SecY
D SIR_0717 secG; putative preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D SIR_1649 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D SIR_1536 yajC1; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D SIR_0159 hypothetical protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D SIR_0366 yidC; OxaA-like protein precursor K03217 yidC; YidC/Oxa1 family membrane protein insertase
D SIR_1483 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D SIR_0772 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D SIR_0922 ftsY; cell division protein K03110 ftsY; fused signal recognition particle receptor
D SIR_0250 spi; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D SIR_0536 putative signal peptidase K03100 lepB; signal peptidase I [EC:3.4.21.89]
D SIR_0905 lspA; putative signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:sib04122]
D SIR_0916 putative cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SIR_0564 csdA; putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SIR_1875 mnmA; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D SIR_0915 thiI; thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
C 03050 Proteasome
C 03018 RNA degradation [PATH:sib03018]
D SIR_0832 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D SIR_1585 pnpA; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D SIR_0718 vacB; exoribonuclease II K12573 rnr; ribonuclease R [EC:3.1.13.1]
D SIR_0439 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D SIR_1301 hypothetical protein K18682 rny; ribonucrease Y [EC:3.1.-.-]
D SIR_0609 hypothetical protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D SIR_0214 metallo-beta-lactamase superfamily protein 1 K12574 rnj; ribonuclease J [EC:3.1.-.-]
D SIR_0534 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D SIR_1523 dnaK; heat shock protein 70/molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D SIR_1626 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:sib03030]
D SIR_0533 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D SIR_1604 polC; DNA polymerase III subunit alpha, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D SIR_0658 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D SIR_1214 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D SIR_1158 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D SIR_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D SIR_1871 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D SIR_0808 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D SIR_1637 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D SIR_0305 single strand binding protein K03111 ssb; single-strand DNA-binding protein
D SIR_0860 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D SIR_0762 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D SIR_0251 rnhC; ribonuclease HIII K03471 rnhC; ribonuclease HIII [EC:3.1.26.4]
D SIR_1766 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D SIR_0741 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:sib03410]
D SIR_1209 nth; putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D SIR_0724 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D SIR_0571 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D SIR_1848 putative DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D SIR_0713 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D SIR_1807 tag; putative DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D SIR_1207 xth; putative exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D SIR_1766 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D SIR_0532 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D SIR_0741 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:sib03420]
D SIR_0007 trcF; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D SIR_0310 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D SIR_0884 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D SIR_1040 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D SIR_0539 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D SIR_0979 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D SIR_1766 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D SIR_0741 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:sib03430]
D SIR_1814 hexA; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D SIR_0253 mutS2; DNA mismatch repair protein mutS K07456 mutS2; DNA mismatch repair protein MutS2
D SIR_1811 hexB; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D SIR_0539 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D SIR_0979 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D SIR_0412 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D SIR_0413 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D SIR_0532 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D SIR_1637 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D SIR_0305 single strand binding protein K03111 ssb; single-strand DNA-binding protein
D SIR_0860 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D SIR_0533 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D SIR_1604 polC; DNA polymerase III subunit alpha, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D SIR_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D SIR_0658 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D SIR_1158 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D SIR_1214 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D SIR_0741 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:sib03440]
D SIR_0532 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D SIR_1637 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D SIR_0305 single strand binding protein K03111 ssb; single-strand DNA-binding protein
D SIR_0860 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D SIR_1889 recF; DNA replication and repair protein K03629 recF; DNA replication and repair protein RecF
D SIR_0043 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D SIR_0428 recR; recombination protein RecR equivalog K06187 recR; recombination protein RecR
D SIR_1803 recA; recombinase A K03553 recA; recombination protein RecA
D SIR_1766 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D SIR_1808 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D SIR_0078 ruvB; Holliday junction DNA helicase B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D SIR_1479 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D SIR_0984 DNA binding protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D SIR_0249 recD; exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D SIR_0533 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D SIR_1604 polC; DNA polymerase III subunit alpha, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D SIR_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D SIR_0658 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D SIR_1158 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D SIR_1214 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D SIR_1298 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:sib03250]
D SIR_1168 ppiA; putative peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:sib02010]
D SIR_0642 potD; spermidine/putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D SIR_0641 potC; spermidine/putrescine transport system permease protein K11070 potC; spermidine/putrescine transport system permease protein
D SIR_0640 potB; spermidine/putrescine transport system permease protein K11071 potB; spermidine/putrescine transport system permease protein
D SIR_0639 potA; spermidine/putrescine transport ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D SIR_1035 putative ABC transporter K05845 opuC; osmoprotectant transport system substrate-binding protein
D SIR_1034 putative ABC transporter K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D SIR_1580 ABC transporter, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D SIR_1821 malX; maltose/maltodextrin-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D SIR_1822 malC; maltose/maltodextrin transport system permease protein K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D SIR_1823 malD; maltose/maltodextrin transport system permease protein K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D SIR_1064 putative transporter protein K17318 lplA; putative aldouronate transport system substrate-binding protein
D SIR_1066 putative transporter protein K17319 lplB; putative aldouronate transport system permease protein
D SIR_1065 putative transporter protein K17320 lplC; putative aldouronate transport system permease protein
D SIR_0850 putative lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D SIR_0848 putative ABC transporter, permease protein K23535 nupB; general nucleoside transport system permease protein
D SIR_0847 putative ABC transporter, permease protein K23536 nupC; general nucleoside transport system permease protein
D SIR_0849 putative ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D SIR_1636 putative periplasmic sugar-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D SIR_0555 pstS; putative ABC transporter, phosphate transport system K02040 pstS; phosphate transport system substrate-binding protein
D SIR_0556 pstC; putative phosphate transport protein K02037 pstC; phosphate transport system permease protein
D SIR_0557 pstA; phosphate transport system permease protein K02038 pstA; phosphate transport system permease protein
D SIR_0558 pstB2; phosphate transport system, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D SIR_0559 pstB1; phosphate transport system, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D SIR_0885 putative glutamine ABC transporter/glutamine-binding protein K10036 glnH; glutamine transport system substrate-binding protein
D SIR_0886 ABC transporter, ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D SIR_1454 ABC transporter, substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D SIR_1357 inner membrane amino-acid ABC transporter permease protein K10009 tcyB; L-cystine transport system permease protein
D SIR_1356 ABC transport system, ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D SIR_1368 ABC uptake transporter substrate binding protein/membrane-spanning protein K17073 lysX1; putative lysine transport system substrate-binding protein
D SIR_1369 polar amino acid transport system, ATP-binding protein K17076 lysY; putative lysine transport system ATP-binding protein
D SIR_1223 ABC-type transport system, periplasmic binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D SIR_1222 branched chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D SIR_1221 putative ABC transporter membrane-spanning permease K01998 livM; branched-chain amino acid transport system permease protein
D SIR_1220 putative branched-chain amino acid transport protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D SIR_1219 branched-chain amino acid transport protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D SIR_1453 hlpA; putative lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D SIR_1450 putative ABC transporter permease protein K02072 metI; D-methionine transport system permease protein
D SIR_1451 metN; methionine import ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D SIR_1387 putative extracellular solute-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D SIR_1511 aliA; oligopeptide-binding protein AliA K15580 oppA; oligopeptide transport system substrate-binding protein
D SIR_1512 amiA; oligopeptide-binding protein AmiA K15580 oppA; oligopeptide transport system substrate-binding protein
D SIR_1510 amiC; oligopeptide transport system permease protein AmiC K15581 oppB; oligopeptide transport system permease protein
D SIR_1509 amiD; oligopeptide transport system permease protein AmiD K15582 oppC; oligopeptide transport system permease protein
D SIR_1508 amiE; oligopeptide transport ATP-binding protein AmiE K15583 oppD; oligopeptide transport system ATP-binding protein
D SIR_1507 amiF; oligopeptide transport ATP-binding protein AmiF K10823 oppF; oligopeptide transport system ATP-binding protein
D SIR_0119 adcA; zinc-binding lipoprotein AdcA K09815 znuA; zinc transport system substrate-binding protein
D SIR_0653 metal binding lipoprotein K09815 znuA; zinc transport system substrate-binding protein
D SIR_0118 adcB; ABC transporter permease K09816 znuB; zinc transport system permease protein
D SIR_0117 adcC; putative zinc transport system ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D SIR_1611 putative metal ABC transporter substrate-binding lipoprotein K19971 psaA; manganese/zinc transport system substrate-binding protein
D SIR_1610 ABC transporter, permease component K19972 psaC; manganese/zinc transport system permease protein
D SIR_1609 putative ABC transporter, ATP-binding protein K10830 psaB; manganese/zinc transport system ATP-binding protein [EC:7.2.2.5]
D SIR_0521 bioY; putative biotin synthase K03523 bioY; biotin transport system substrate-specific component
D SIR_1881 cbiQ; putative cobalt transport protein CbiQ K16785 ecfT; energy-coupling factor transport system permease protein
D SIR_0293 hypothetical protein K16785 ecfT; energy-coupling factor transport system permease protein
D SIR_0339 ABC transporter permease protein K16785 ecfT; energy-coupling factor transport system permease protein
D SIR_1883 cbiO2; cobalt import ATP-binding protein K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D SIR_1882 cbiO1; cobalt import ATP-binding protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D SIR_1191 putative ABC transporter protein K11051 cylB; multidrug/hemolysin transport system permease protein
D SIR_1192 ABC transporter protein K11050 cylA; multidrug/hemolysin transport system ATP-binding protein
D SIR_0964 hypothetical protein K20491 nisE; lantibiotic transport system permease protein
D SIR_0963 hypothetical protein K20492 nisG; lantibiotic transport system permease protein
D SIR_0965 putative ATP-binding protein K20490 nisF; lantibiotic transport system ATP-binding protein
D SIR_1186 putative ABC transporter permease K19084 braE; bacitracin transport system permease protein
D SIR_1193 putative permease protein K19084 braE; bacitracin transport system permease protein
D SIR_1187 putative ABC transporter ATP-binding protein K19083 braD; bacitracin transport system ATP-binding protein
D SIR_1194 putative ABC transporter ATP-binding protein K19083 braD; bacitracin transport system ATP-binding protein
D SIR_1103 ftsX; cell division ABC transporter K09811 ftsX; cell division transport system permease protein
D SIR_1104 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D SIR_0542 putative ABC transporter, ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D SIR_0543 putative ABC transporter, ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D SIR_0751 ABC transporter permease/ATPase K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D SIR_0752 ABC-type multidrug transport system, permease component K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D SIR_0707 ABC-type transport system, ATPase and permease component K18216 steA; ATP-binding cassette, subfamily B, tetracycline resistant protein
D SIR_0708 putative ABC transporter K18217 steB; ATP-binding cassette, subfamily B, tetracycline resistant protein
D SIR_0498 putative ABC transporter ATP-binding/permease protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D SIR_0889 putative ATP-binding/permease protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D SIR_1498 lmrA1; putative ABC-type multidrug transport system protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D SIR_1497 lmrA2; putative ABC transporter K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D SIR_0499 putative ABC transporter ATP-binding/permease protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D SIR_0888 putative multidrug ABC transporter permease/ATPase K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D SIR_1155 putative ABC-type bacteriocin transporter K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter
D SIR_1554 hypothetical protein K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter
C 02060 Phosphotransferase system (PTS) [PATH:sib02060]
D SIR_1041 ptsI; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D SIR_1042 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D SIR_0349 glucose-specific enzyme K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D SIR_1769 putative PTS enzyme K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D SIR_0350 PTS system glucose-specific EIICBA component K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208]
D SIR_0097 PTS system, sucrose-specific IIB component protein K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D SIR_1503 scrA; PTS system, sucrose-specific IIABC component K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D SIR_1239 putative PTS system, enzyme II K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D SIR_0450 lacF; PTS system, lactose-specific IIA component K02786 lacF; lactose PTS system EIIA component [EC:2.7.1.207]
D SIR_0451 lacE; PTS system, lactose-specific IIBC component K02788 lacE; lactose PTS system EIICB component [EC:2.7.1.207]
D SIR_1082 PTS system, IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D SIR_1122 celC1; putative PTS system, cellobiose-specific IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D SIR_0275 PTS system, IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D SIR_1081 PTS system, cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D SIR_1124 celB; PTS system, IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D SIR_0274 PTS system, lactose/cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D SIR_1080 PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D SIR_1120 celD; putative phosphotransferase (PTS) system K02761 celB; cellobiose PTS system EIIC component
D SIR_1494 PTS system, lactose/cellobiose family IIC component K02761 celB; cellobiose PTS system EIIC component
D SIR_0271 PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D SIR_0678 component of a phospotransferase system K02761 celB; cellobiose PTS system EIIC component
D SIR_0073 putative PTS system, mannose-specific IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D SIR_1425 manL; putative phosphotransferase system, mannose-specific EIIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D SIR_1426 manM; PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D SIR_1630 phosphotransferase system, IIC component K02795 manY; mannose PTS system EIIC component
D SIR_0071 putative PTS phosphotransferase system sugar-specific EIIC component K02795 manY; mannose PTS system EIIC component
D SIR_1427 manN; PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component
D SIR_0072 putative mannose permease IID component K02796 manZ; mannose PTS system EIID component
D SIR_1541 PTS system, N-acetylgalactosamine-specific IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D SIR_1632 PTS system, sugar-specific IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D SIR_1539 PTS system, N-acetylgalactosamine-specific IIB component K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D SIR_1538 PTS system, N-acetylgalactosamine-specific IIC component K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D SIR_1537 PTS system, N-acetylgalactosamine-specific IID component K02747 agaE; N-acetylgalactosamine PTS system EIID component
D SIR_0444 PTS system enzyme IIBC component K20112 gatA; galactose PTS system EIIA component [EC:2.7.1.204]
D SIR_0445 putative PTS system, IIB component K20113 gatB; galactose PTS system EIIB component [EC:2.7.1.204]
D SIR_0446 putative PTS system IIC component K20114 gatC; galactose PTS system EIIC component
D SIR_1656 ptxA; putative phosphotransferase system sugar-specific EII component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D SIR_1657 putative phosphotransferase system sugar-specific EII component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D SIR_1658 sgaT; putative sugar-specific permease, SgaT/UlaA K03475 ulaA; ascorbate PTS system EIIC component
D SIR_0511 fruA; putative PTS system, fructose-specific enzyme IIABC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D SIR_0510 fruB; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
C 03070 Bacterial secretion system [PATH:sib03070]
D SIR_0717 secG; putative preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D SIR_1740 secY; preprotein translocase subunit K03076 secY; preprotein translocase subunit SecY
D SIR_1649 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D SIR_1536 yajC1; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D SIR_0159 hypothetical protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D SIR_0366 yidC; OxaA-like protein precursor K03217 yidC; YidC/Oxa1 family membrane protein insertase
D SIR_1483 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D SIR_0922 ftsY; cell division protein K03110 ftsY; fused signal recognition particle receptor
D SIR_0772 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D SIR_1336 putative conjugal transfer protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D SIR_0998 hypothetical protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:sib02020]
D SIR_0555 pstS; putative ABC transporter, phosphate transport system K02040 pstS; phosphate transport system substrate-binding protein
D SIR_1904 putative serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D SIR_0929 vicK; putative histidine sensory kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3]
D SIR_0930 vicR; putative response transcriptional regulator K07668 vicR; two-component system, OmpR family, response regulator VicR
D SIR_0001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D SIR_1771 saeS; histidine kinase K10681 saeS; two-component system, OmpR family, sensor histidine kinase SaeS [EC:2.7.13.3]
D SIR_1772 saeR; DNA-binding response regulator K10682 saeR; two-component system, OmpR family, response regulator SaeR
D SIR_1186 putative ABC transporter permease K19084 braE; bacitracin transport system permease protein
D SIR_1193 putative permease protein K19084 braE; bacitracin transport system permease protein
D SIR_1187 putative ABC transporter ATP-binding protein K19083 braD; bacitracin transport system ATP-binding protein
D SIR_1194 putative ABC transporter ATP-binding protein K19083 braD; bacitracin transport system ATP-binding protein
D SIR_1196 putative signal transduction histidine kinase K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3]
D SIR_1198 putative response regulator K19082 braR; two-component system, OmpR family, response regulator protein BraR/BceR
D SIR_1855 dltA; putative D-alanine-poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D SIR_1854 dltB; putative membrane protein involved in D-alanine export K03739 dltB; membrane protein involved in D-alanine export
D SIR_1853 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13]
D SIR_1852 dltD; putative D-alanine transfer protein DltD K03740 dltD; D-alanine transfer protein
D SIR_0858 ciaH; putative sensor histidine kinase K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3]
D SIR_0859 ciaR; two-component response transcriptional regulator K14983 ciaR; two-component system, OmpR family, response regulator CiaR
D SIR_1092 putative two component system histidine kinase K18986 ihk; two-component system, OmpR family, sensor kinase Ihk [EC:2.7.13.3]
D SIR_1093 putative two-component response regulator K18987 irr; two-component system, OmpR family, response regulator Irr
D SIR_0966 hypothetical protein K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D SIR_0967 putative response regulator K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D SIR_0587 epiB; putative biosynthesis protein K20483 nisB; lantibiotic biosynthesis protein
D SIR_0589 putative biosynthesis protein K20484 nisC; lantibiotic biosynthesis protein
D SIR_0590 putative antibiotic ABC transporter ATP-binding protein K20485 nisT; ATP-binding cassette, subfamily B, bacterial NisT/SpaT
D SIR_0968 hypothetical protein K20486 nisP; lantibiotic leader peptide-processing serine protease [EC:3.4.21.-]
D SIR_0969 hypothetical protein K20489 nisI; lantibiotic immunity protein
D SIR_0965 putative ATP-binding protein K20490 nisF; lantibiotic transport system ATP-binding protein
D SIR_0964 hypothetical protein K20491 nisE; lantibiotic transport system permease protein
D SIR_0963 hypothetical protein K20492 nisG; lantibiotic transport system permease protein
D SIR_1152 putative histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3]
D SIR_1151 putative response regulator K07707 agrA; two-component system, LytTR family, response regulator AgrA
D SIR_1900 comD; histidine kinase K12294 comD; two-component system, LytTR family, sensor histidine kinase ComD [EC:2.7.13.3]
D SIR_1899 comE; response regulator K12295 comE; two-component system, LytTR family, response regulator ComE
D SIR_1732 comX3; competence-specific global transcription modulator K12296 comX1_2; competence protein ComX
D SIR_0016 comX1; competence-specific global transcription modulator K12296 comX1_2; competence protein ComX
D SIR_0316 comX2; competence-specific global transcription modulator K12296 comX1_2; competence protein ComX
D SIR_0011 beta-lactamase class A K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D SIR_1373 histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D SIR_1372 two-component response transcriptional regulator K07693 desR; two-component system, NarL family, response regulator DesR
D SIR_1292 putative histidine kinase K11617 liaS; two-component system, NarL family, sensor histidine kinase LiaS [EC:2.7.13.3]
D SIR_1291 rr03; putative two-component response regulator K11618 liaR; two-component system, NarL family, response regulator LiaR
D SIR_1858 hypothetical protein K11621 liaG; lia operon protein LiaG
D SIR_1671 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SIR_0800 putative histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D SIR_1062 putative histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D SIR_1061 putative response regulator K07720 yesN; two-component system, response regulator YesN
D SIR_0801 rr09; putative two-component response transcriptional regulator K07720 yesN; two-component system, response regulator YesN
D SIR_0083 putative phosphotyrosine protein phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:sib02024]
D SIR_1302 luxS; S-ribosylhomocysteinase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D SIR_1482 aroG; putative phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D SIR_1223 ABC-type transport system, periplasmic binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D SIR_1222 branched chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D SIR_1221 putative ABC transporter membrane-spanning permease K01998 livM; branched-chain amino acid transport system permease protein
D SIR_1220 putative branched-chain amino acid transport protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D SIR_1219 branched-chain amino acid transport protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D SIR_1152 putative histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3]
D SIR_1151 putative response regulator K07707 agrA; two-component system, LytTR family, response regulator AgrA
D SIR_0115 ily; intermedilysin protein K11031 slo; thiol-activated cytolysin
D SIR_1900 comD; histidine kinase K12294 comD; two-component system, LytTR family, sensor histidine kinase ComD [EC:2.7.13.3]
D SIR_1899 comE; response regulator K12295 comE; two-component system, LytTR family, response regulator ComE
D SIR_0858 ciaH; putative sensor histidine kinase K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3]
D SIR_0859 ciaR; two-component response transcriptional regulator K14983 ciaR; two-component system, OmpR family, response regulator CiaR
D SIR_1387 putative extracellular solute-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D SIR_1511 aliA; oligopeptide-binding protein AliA K15580 oppA; oligopeptide transport system substrate-binding protein
D SIR_1512 amiA; oligopeptide-binding protein AmiA K15580 oppA; oligopeptide transport system substrate-binding protein
D SIR_1510 amiC; oligopeptide transport system permease protein AmiC K15581 oppB; oligopeptide transport system permease protein
D SIR_1509 amiD; oligopeptide transport system permease protein AmiD K15582 oppC; oligopeptide transport system permease protein
D SIR_1508 amiE; oligopeptide transport ATP-binding protein AmiE K15583 oppD; oligopeptide transport system ATP-binding protein
D SIR_1507 amiF; oligopeptide transport ATP-binding protein AmiF K10823 oppF; oligopeptide transport system ATP-binding protein
D SIR_1732 comX3; competence-specific global transcription modulator K12296 comX1_2; competence protein ComX
D SIR_0016 comX1; competence-specific global transcription modulator K12296 comX1_2; competence protein ComX
D SIR_0316 comX2; competence-specific global transcription modulator K12296 comX1_2; competence protein ComX
D SIR_1153 hypothetical protein K20343 blpC; peptide pheromone BlpC
D SIR_1155 putative ABC-type bacteriocin transporter K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter
D SIR_1554 hypothetical protein K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter
D SIR_1154 putative bacteriocin secretion accessory protein K20345 blpB; membrane fusion protein, peptide pheromone/bacteriocin exporter
D SIR_0153 transcriptional regulator K20373 rgg2; HTH-type transcriptional regulator, SHP2-responsive activator
D SIR_1845 transcriptional activator K20374 rgg3; HTH-type transcriptional regulator, SHP3-responsive repressor
D SIR_0140 XRE family transcriptional regulator K20374 rgg3; HTH-type transcriptional regulator, SHP3-responsive repressor
D SIR_1864 hypothetical protein K20375 ropB; HTH-type transcriptional regulator, pheromone-responsive regulator
D SIR_0075 lacD; tagatose 1,6-diphosphate aldolase K01635 lacD; tagatose 1,6-diphosphate aldolase [EC:4.1.2.40]
D SIR_0440 lacD1; tagatose 1,6-diphosphate aldolase K01635 lacD; tagatose 1,6-diphosphate aldolase [EC:4.1.2.40]
D SIR_0159 hypothetical protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D SIR_0366 yidC; OxaA-like protein precursor K03217 yidC; YidC/Oxa1 family membrane protein insertase
D SIR_0717 secG; putative preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D SIR_1740 secY; preprotein translocase subunit K03076 secY; preprotein translocase subunit SecY
D SIR_1649 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D SIR_1536 yajC1; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D SIR_1483 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D SIR_0922 ftsY; cell division protein K03110 ftsY; fused signal recognition particle receptor
D SIR_0772 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D SIR_0587 epiB; putative biosynthesis protein K20483 nisB; lantibiotic biosynthesis protein
D SIR_0589 putative biosynthesis protein K20484 nisC; lantibiotic biosynthesis protein
D SIR_0590 putative antibiotic ABC transporter ATP-binding protein K20485 nisT; ATP-binding cassette, subfamily B, bacterial NisT/SpaT
D SIR_0968 hypothetical protein K20486 nisP; lantibiotic leader peptide-processing serine protease [EC:3.4.21.-]
D SIR_0966 hypothetical protein K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D SIR_0967 putative response regulator K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D SIR_0969 hypothetical protein K20489 nisI; lantibiotic immunity protein
D SIR_0965 putative ATP-binding protein K20490 nisF; lantibiotic transport system ATP-binding protein
D SIR_0964 hypothetical protein K20491 nisE; lantibiotic transport system permease protein
D SIR_0963 hypothetical protein K20492 nisG; lantibiotic transport system permease protein
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
D SIR_1636 putative periplasmic sugar-binding protein K10439 rbsB; ribose transport system substrate-binding protein
C 02040 Flagellar assembly [PATH:sib02040]
D SIR_1454 ABC transporter, substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D SIR_0807 rpoD; RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D SIR_0832 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
D SIR_0870 inlA; putative internalin A precursor K13730 inlA; internalin A
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:sib01501]
D SIR_0011 beta-lactamase class A K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D SIR_1387 putative extracellular solute-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D SIR_1511 aliA; oligopeptide-binding protein AliA K15580 oppA; oligopeptide transport system substrate-binding protein
D SIR_1512 amiA; oligopeptide-binding protein AmiA K15580 oppA; oligopeptide transport system substrate-binding protein
D SIR_1510 amiC; oligopeptide transport system permease protein AmiC K15581 oppB; oligopeptide transport system permease protein
D SIR_1509 amiD; oligopeptide transport system permease protein AmiD K15582 oppC; oligopeptide transport system permease protein
D SIR_1508 amiE; oligopeptide transport ATP-binding protein AmiE K15583 oppD; oligopeptide transport system ATP-binding protein
D SIR_1507 amiF; oligopeptide transport ATP-binding protein AmiF K10823 oppF; oligopeptide transport system ATP-binding protein
D SIR_1348 pbp1a; penicillin binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D SIR_1679 putative penicillin binding protein IIB K03693 pbp1b; penicillin-binding protein 1B
D SIR_0124 penicillin-binding protein K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4]
D SIR_0427 pbp2b; putative penicillin binding protein 2B K00687 pbp2B; penicillin-binding protein 2B
D SIR_1389 pbp2X; penicillin-binding protein 2/putative cell division protein FtsI K12556 pbp2X; penicillin-binding protein 2X
C 01502 Vancomycin resistance [PATH:sib01502]
D SIR_0429 ddl; D-alanyl-alanine synthetase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D SIR_1480 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D SIR_0430 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D SIR_1388 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D SIR_1253 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:sib01503]
D SIR_1904 putative serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D SIR_1168 ppiA; putative peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D SIR_1855 dltA; putative D-alanine-poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D SIR_1854 dltB; putative membrane protein involved in D-alanine export K03739 dltB; membrane protein involved in D-alanine export
D SIR_1853 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13]
D SIR_1852 dltD; putative D-alanine transfer protein DltD K03740 dltD; D-alanine transfer protein
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:sib01000]
C 01001 Protein kinases [BR:sib01001]
D SIR_1294 pkn; putative serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D SIR_1784 wze; capsular exopolysaccharide family protein K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D SIR_0929 vicK; putative histidine sensory kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3]
D SIR_1771 saeS; histidine kinase K10681 saeS; two-component system, OmpR family, sensor histidine kinase SaeS [EC:2.7.13.3]
D SIR_1196 putative signal transduction histidine kinase K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3]
D SIR_0858 ciaH; putative sensor histidine kinase K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3]
D SIR_1092 putative two component system histidine kinase K18986 ihk; two-component system, OmpR family, sensor kinase Ihk [EC:2.7.13.3]
D SIR_0966 hypothetical protein K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D SIR_1373 histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D SIR_1292 putative histidine kinase K11617 liaS; two-component system, NarL family, sensor histidine kinase LiaS [EC:2.7.13.3]
D SIR_1152 putative histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3]
D SIR_1900 comD; histidine kinase K12294 comD; two-component system, LytTR family, sensor histidine kinase ComD [EC:2.7.13.3]
D SIR_0800 putative histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D SIR_1062 putative histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:sib01009]
D SIR_0534 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D SIR_1295 pppL; protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D SIR_0620 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:sib01002]
D SIR_0905 lspA; putative signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D SIR_1349 pepC; aminopeptidase C K01372 BLMH; bleomycin hydrolase [EC:3.4.22.40]
D SIR_0775 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D SIR_0659 putative glutamine amidotransferase K07010 K07010; putative glutamine amidotransferase
D SIR_1155 putative ABC-type bacteriocin transporter K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter
D SIR_1554 hypothetical protein K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter
D SIR_0040 putative stress protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D SIR_1674 hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D SIR_0054 surface antigen K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D SIR_0077 hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D SIR_0049 purF; putative amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D SIR_1660 glmS; D-fructose-6-phosphate amidotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D SIR_1098 thiJ; putative 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D SIR_1049 hypothetical protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D SIR_0811 srtA; sortase A K07284 srtA; sortase A [EC:3.4.22.70]
D SIR_0494 srtC; sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
D SIR_0082 hypothetical protein K07284 srtA; sortase A [EC:3.4.22.70]
D SIR_0254 pepD; dipeptidase A K08659 pepDA; dipeptidase [EC:3.4.-.-]
D SIR_1048 putative dipeptidase K08659 pepDA; dipeptidase [EC:3.4.-.-]
D SIR_1644 hypothetical protein K07052 K07052; CAAX protease family protein
D SIR_1806 putative protease K07052 K07052; CAAX protease family protein
D SIR_1047 hypothetical protein K07052 K07052; CAAX protease family protein
D SIR_1150 hypothetical protein K07052 K07052; CAAX protease family protein
D SIR_0221 hypothetical protein K07052 K07052; CAAX protease family protein
D SIR_0591 hypothetical protein K07052 K07052; CAAX protease family protein
D SIR_0875 hypothetical protein K07052 K07052; CAAX protease family protein
D SIR_1024 hypothetical protein K07052 K07052; CAAX protease family protein
D SIR_1205 hypothetical protein K07052 K07052; CAAX protease family protein
D SIR_0508 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D SIR_1118 pepB; oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D SIR_1608 pepO; putative endopeptidase O K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D SIR_1038 pepV; dipeptidase PepV K01274 pepV; beta-Ala-Xaa dipeptidase [EC:3.4.13.-]
D SIR_1452 putative succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D SIR_0634 pepT; peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D SIR_1684 hipO; putative N-acetyldiaminopimelate deacetylase K05823 dapL; N-acetyldiaminopimelate deacetylase [EC:3.5.1.47]
D SIR_0731 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D SIR_0935 pepQ; putative proline dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D SIR_0312 pepP; X-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D SIR_1602 pepS; aminopeptidase K19689 ampS; aminopeptidase [EC:3.4.11.-]
D SIR_0014 ftsH; cell division protein, putative K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D SIR_1641 pepA; glutamyl aminopeptidase K01261 pepA; glutamyl aminopeptidase [EC:3.4.11.7]
D SIR_0344 htpX; putative heat shock protein K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D SIR_1646 putative membrane-associated zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D SIR_1904 putative serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D SIR_1402 putative serine protease K01361 E3.4.21.96; lactocepin [EC:3.4.21.96]
D SIR_0968 hypothetical protein K20486 nisP; lantibiotic leader peptide-processing serine protease [EC:3.4.21.-]
D SIR_1359 dacA; penicillin-binding protein 3 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D SIR_1225 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D SIR_0234 pepX; x-prolyl-dipeptidyl aminopeptidase K01281 pepX; X-Pro dipeptidyl-peptidase [EC:3.4.14.11]
D SIR_1264 hypothetical protein K07177 K07177; Lon-like protease
D SIR_0250 spi; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D SIR_0536 putative signal peptidase K03100 lepB; signal peptidase I [EC:3.4.21.89]
D SIR_0974 putative peptidase E K05995 pepE; dipeptidase E [EC:3.4.13.21]
D SIR_0608 putative protease K08303 prtC; U32 family peptidase [EC:3.4.-.-]
C 01003 Glycosyltransferases [BR:sib01003]
D SIR_0932 glycosyl transferase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
D SIR_0933 putative glycosyl transferase K13677 dgs; 1,2-diacylglycerol-3-alpha-glucose alpha-1,2-glucosyltransferase [EC:2.4.1.208]
D SIR_0482 glgA; glycogen synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21]
D SIR_1348 pbp1a; penicillin binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D SIR_1679 putative penicillin binding protein IIB K03693 pbp1b; penicillin-binding protein 1B
D SIR_0124 penicillin-binding protein K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4]
D SIR_1596 lipopolysaccharide N-acetylglucosaminyltransferase K21011 pelF; polysaccharide biosynthesis protein PelF
D SIR_1364 rgpG; putative glycosyl transferase N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:sib01005]
D SIR_0949 rgpA; putative rhamnosyltransferase RgpA K12996 rgpA; rhamnosyltransferase [EC:2.4.1.-]
D SIR_0948 rgpB; putative polysaccharide biosynthesis protein/rhamnosyltransferase K12997 rgpB; rhamnosyltransferase [EC:2.4.1.-]
D SIR_0945 polysaccharide biosynthesis protein K07272 rgpF; rhamnosyltransferase [EC:2.4.1.-]
D SIR_1364 rgpG; putative glycosyl transferase N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D SIR_0960 putative glycosyl transferase K12999 rgpI; glucosyltransferase [EC:2.4.1.-]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:sib01011]
D SIR_0496 murA1; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D SIR_0728 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D SIR_0638 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D SIR_0360 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D SIR_1254 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D SIR_1231 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K05362 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [EC:6.3.2.7]
D SIR_0429 ddl; D-alanyl-alanine synthetase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D SIR_1111 murM; FemAB family protein K05363 murM; serine/alanine adding enzyme [EC:2.3.2.10]
D SIR_1112 murN; FemAB family protein K12554 murN; alanine adding enzyme [EC:2.3.2.-]
D SIR_1480 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D SIR_0373 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D SIR_1388 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D SIR_1253 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D SIR_1366 bacA; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D SIR_0387 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D SIR_1348 pbp1a; penicillin binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D SIR_1679 putative penicillin binding protein IIB K03693 pbp1b; penicillin-binding protein 1B
D SIR_0124 penicillin-binding protein K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4]
D SIR_0427 pbp2b; putative penicillin binding protein 2B K00687 pbp2B; penicillin-binding protein 2B
D SIR_1389 pbp2X; penicillin-binding protein 2/putative cell division protein FtsI K12556 pbp2X; penicillin-binding protein 2X
D SIR_1359 dacA; penicillin-binding protein 3 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D SIR_0040 putative stress protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D SIR_1674 hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D SIR_0054 surface antigen K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D SIR_0077 hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D SIR_0811 srtA; sortase A K07284 srtA; sortase A [EC:3.4.22.70]
D SIR_0494 srtC; sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
D SIR_0082 hypothetical protein K07284 srtA; sortase A [EC:3.4.22.70]
D SIR_0363 hypothetical protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
C 01004 Lipid biosynthesis proteins [BR:sib01004]
D SIR_1438 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D SIR_1441 fabH; 3-oxoacyl-(acyl carrier protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D SIR_1436 fabF; 3-oxoacyl-(acyl carrier protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D SIR_1179 fabG1; oxidoreductase, short chain dehydrogenase/reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SIR_1437 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SIR_1434 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D SIR_1439 fabK; enoyl-acyl carrier protein reductase K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
D SIR_1443 phaB; enoyl-CoA hydratase K18474 fabM; trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:5.3.3.14]
D SIR_0044 plsX; putative glycerol-3-phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D SIR_0824 putative glycerol-3-phosphate aceyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D SIR_1050 putative acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:sib01008]
C 01006 Prenyltransferases [BR:sib01006]
D SIR_0414 putative farnesyl diphosphate synthase/geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D SIR_1648 uppS; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D SIR_0524 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
C 01007 Amino acid related enzymes [BR:sib01007]
D SIR_1686 gltX; glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D SIR_1680 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D SIR_1891 trpS; tyryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D SIR_1582 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D SIR_1816 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D SIR_1199 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D SIR_1244 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D SIR_1276 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D SIR_1607 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D SIR_1055 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D SIR_1828 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SIR_1472 aspS1; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SIR_0838 asnC; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D SIR_1830 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D SIR_1398 glyQ; glycyl-tRNA synthetase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D SIR_1397 glyS; glycyl-tRNA synthetase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D SIR_1429 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D SIR_1645 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D SIR_1090 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D SIR_1114 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D SIR_0517 pheS; phenylalanyl-tRNA synthetase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D SIR_0520 pheT; phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D SIR_1475 aspC; putative aminotransferase AlaT K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D SIR_0042 araT; putative aminotransferase, AraT K00841 patA; aminotransferase [EC:2.6.1.-]
D SIR_1228 lcd; betaC-S lyase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D SIR_0820 amino acid transferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:sib00194]
D SIR_0491 atpC; ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D SIR_0490 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D SIR_0489 atpG; ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D SIR_0488 atpA; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D SIR_0487 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D SIR_0486 atpF; proton-translocating ATPase b subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D SIR_0484 atpE; ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D SIR_0485 atpB; ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:sib03000]
D SIR_0646 hypothetical protein K13653 K13653; AraC family transcriptional regulator
D SIR_0257 nac; LysR family transcriptional regulator K21959 ftsR; LysR family transcriptional regulator, cell division regulator
D SIR_0441 putative lactose phosphotransferase system transcriptional repressor K02530 lacR; DeoR family transcriptional regulator, lactose phosphotransferase system repressor
D SIR_0509 fruR; phosphotransferase system repressor K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D SIR_1849 putative DeoR family transcriptional regulator K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator
D SIR_0919 hypothetical protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
D SIR_0934 ccpA; catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SIR_1825 malR; maltose operon transcriptional repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SIR_0405 msmR; transcriptional repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SIR_0668 galR; galactose operon transcriptional regulator GalR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SIR_1534 regR; putative sugar binding transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D SIR_1505 scrR; sucrose regulon regulatory protein K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D SIR_1240 treR; trehalose operon repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D SIR_1493 GentR family transcriptional regulator K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization
D SIR_0774 hypothetical protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D SIR_0541 putative TetR/AcrR family transcriptional regulator K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase
D SIR_1400 putative transcriptional regulator K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility
D SIR_1036 putative MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D SIR_1672 glnR; putative transcription regulator K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
D SIR_0425 putative Fe/Zn uptake regulation protein K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D SIR_1138 hypothetical protein K21828 arcR; CRP/FNR family transcriptional regulator, arginine deiminase pathway regulator
D SIR_1834 cadC; cadmium efflux system accessory protein K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D SIR_1204 hypothetical protein K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons
D SIR_1857 putative transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D SIR_1612 putative transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D SIR_0099 transcriptional regulator protein K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor
D SIR_0667 birA; biotin--protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D SIR_0153 transcriptional regulator K20373 rgg2; HTH-type transcriptional regulator, SHP2-responsive activator
D SIR_1845 transcriptional activator K20374 rgg3; HTH-type transcriptional regulator, SHP3-responsive repressor
D SIR_0140 XRE family transcriptional regulator K20374 rgg3; HTH-type transcriptional regulator, SHP3-responsive repressor
D SIR_1864 hypothetical protein K20375 ropB; HTH-type transcriptional regulator, pheromone-responsive regulator
D SIR_0208 purR; purine operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D SIR_0562 redox-sensing transcriptional repressor REX K01926 rex; redox-sensing transcriptional repressor
D SIR_1474 codY; GTP-sensing transcriptional pleiotropic repressor K03706 codY; transcriptional pleiotropic repressor
D SIR_1392 putative transcriptional regulator K07729 K07729; putative transcriptional regulator
D SIR_0334 hypothetical protein K07729 K07729; putative transcriptional regulator
D SIR_1652 phosphotransferase K03493 bglG1; transcriptional antiterminator
D SIR_1123 celR; putative transcriptional regulator K03491 licR; probable licABCH operon transcriptional regulator
D SIR_1905 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SIR_0449 lacT; transcription antiterminator K02531 lacT; transcriptional antiterminator
D SIR_1132 arcR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D SIR_1815 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D SIR_0416 ahrC; transcriptional regulator K03402 argR; transcriptional regulator of arginine metabolism
D SIR_1525 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D SIR_0132 ctsR; transcriptional regulator CtsR K03708 ctsR; transcriptional regulator of stress and heat shock response
D SIR_1167 hypothetical protein K03973 pspC; phage shock protein C
D SIR_0600 hypothetical protein K03973 pspC; phage shock protein C
D SIR_0869 pyrR; pyrimidine regulatory protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D SIR_0353 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D SIR_1732 comX3; competence-specific global transcription modulator K12296 comX1_2; competence protein ComX
D SIR_0016 comX1; competence-specific global transcription modulator K12296 comX1_2; competence protein ComX
D SIR_0316 comX2; competence-specific global transcription modulator K12296 comX1_2; competence protein ComX
C 03021 Transcription machinery [BR:sib03021]
D SIR_1734 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D SIR_1678 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D SIR_1677 rpoC; DNA-directed RNA polymerase, subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D SIR_1515 rpoE; DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta
D SIR_1299 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D SIR_0807 rpoD; RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
D SIR_1409 nusA; transcription elongation protein K02600 nusA; transcription termination/antitermination protein NusA
D SIR_0315 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D SIR_0126 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D SIR_0364 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
C 03019 Messenger RNA biogenesis [BR:sib03019]
D SIR_0926 rnc; RNase III: ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D SIR_0609 hypothetical protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D SIR_0214 metallo-beta-lactamase superfamily protein 1 K12574 rnj; ribonuclease J [EC:3.1.-.-]
D SIR_1301 hypothetical protein K18682 rny; ribonucrease Y [EC:3.1.-.-]
D SIR_0718 vacB; exoribonuclease II K12573 rnr; ribonuclease R [EC:3.1.13.1]
D SIR_0207 cbf1; putative CMP-binding protein K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-]
D SIR_0439 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D SIR_1358 ATP-dependent RNA helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
D SIR_0832 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D SIR_1585 pnpA; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D SIR_0534 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D SIR_1523 dnaK; heat shock protein 70/molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D SIR_1626 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D SIR_0873 hypothetical protein K06958 rapZ; RNase adapter protein RapZ
C 03041 Spliceosome
C 03011 Ribosome [BR:sib03011]
D SIR_0816 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D SIR_0129 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D SIR_1753 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D SIR_1868 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D SIR_1742 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D SIR_0304 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D SIR_0211 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D SIR_1745 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D SIR_1576 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D SIR_1760 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D SIR_1735 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D SIR_0210 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D SIR_1736 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D SIR_1746 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D SIR_1588 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D SIR_0744 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D SIR_1750 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D SIR_0306 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D SIR_1755 ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19
D SIR_0855 rpsT; putative 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D SIR_0760 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D SIR_1162 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D SIR_1756 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D SIR_1759 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D SIR_1758 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D SIR_1747 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D SIR_1744 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D SIR_1872 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D SIR_0647 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D SIR_1163 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D SIR_0648 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D SIR_1577 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D SIR_1749 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D SIR_1741 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D SIR_1752 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D SIR_1733 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D SIR_1743 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D SIR_0863 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D SIR_0628 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D SIR_0913 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D SIR_1754 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D SIR_1757 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D SIR_1748 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D SIR_0911 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D SIR_1378 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D SIR_1751 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D SIR_0456 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D SIR_1831 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D SIR_1832 rpmG3; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D SIR_0125 rpmG1; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D SIR_0716 rpmG2; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D SIR_0163 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D SIR_0627 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D SIR_1737 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D SIR_0020 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SIR_1728 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SIR_1446 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SIR_0320 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SIR_0017 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SIR_0317 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SIR_1731 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SIR_1449 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SIR_0019 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SIR_1729 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SIR_1447 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SIR_0319 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:sib03009]
D SIR_0926 rnc; RNase III: ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D SIR_0711 era; GTP-binding protein Era K03595 era; GTPase
D SIR_0672 GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
D SIR_1409 nusA; transcription elongation protein K02600 nusA; transcription termination/antitermination protein NusA
D SIR_0315 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D SIR_0126 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D SIR_1589 rsuA1; putative ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D SIR_1257 synthase protein K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D SIR_0200 ksgA; putative dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D SIR_1296 methyltransferase protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D SIR_0853 ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D SIR_1266 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D SIR_1615 RNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D SIR_0342 rsmG; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D SIR_1391 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D SIR_1212 hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D SIR_0415 putative hemolysin RNA methylase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D SIR_1681 rrmA; ribosomal RNA large subunit methyltransferase A K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D SIR_1579 trmH; RNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D SIR_1903 rlmH; ribosomal RNA large subunit methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D SIR_1016 hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D SIR_1262 putative radical SAM enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D SIR_1003 rumA1; putative RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D SIR_0380 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D SIR_0123 rluD2; putative ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SIR_0569 rluD1; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SIR_0904 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SIR_0217 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D SIR_1183 acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D SIR_0651 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D SIR_1616 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D SIR_1799 hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D SIR_0439 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D SIR_1358 ATP-dependent RNA helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
D SIR_0203 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D SIR_0357 engA; GTP-binding protein EngA K03977 engA; GTPase
D SIR_0761 rbgA; ribosomal biogenesis GTPase K14540 rbgA; ribosome biogenesis GTPase A
D SIR_0525 hflX; putative GTP-binding protein K03665 hflX; GTPase
D SIR_1464 yqeH; GTP-binding protein YqeH K06948 yqeH; 30S ribosome assembly GTPase
D SIR_0781 putative tranlsation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D SIR_1614 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D SIR_1405 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D SIR_1410 hypothetical protein K09748 rimP; ribosome maturation factor RimP
D SIR_1888 hypothetical protein K14761 rlbA; ribosome-associated protein
D SIR_1459 hypothetical protein K09710 ybeB; ribosome-associated protein
D SIR_0709 hypothetical protein K07042 ybeY; probable rRNA maturation factor
D SIR_1463 hypothetical protein K07574 yhbY; RNA-binding protein
D SIR_1267 yfiA; putative 30S ribosomal interface protein S30EA K05808 hpf; ribosome hibernation promoting factor
D SIR_0005 ychF; translation-associated GTPase K06942 ychF; ribosome-binding ATPase
D SIR_0346 hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:sib03016]
D SIR_0527 rnz; ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D SIR_0515 papS; tRNA CCA-pyrophosphorylase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D SIR_1645 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D SIR_1244 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D SIR_1607 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D SIR_1199 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D SIR_1816 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D SIR_1055 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D SIR_1828 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SIR_1472 aspS1; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SIR_1114 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D SIR_0838 asnC; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D SIR_1090 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D SIR_1429 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D SIR_1582 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D SIR_1276 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D SIR_1830 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D SIR_0517 pheS; phenylalanyl-tRNA synthetase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D SIR_0520 pheT; phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D SIR_1680 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D SIR_1891 trpS; tyryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D SIR_1613 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D SIR_1416 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D SIR_1412 trmB; tRNA (guanine-N(7))-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D SIR_1520 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D SIR_0549 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D SIR_0916 putative cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SIR_0564 csdA; putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SIR_0781 putative tranlsation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D SIR_0524 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D SIR_1022 trmE; tRNA modification GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D SIR_1874 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D SIR_0158 rnpA; ribonuclease P K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D SIR_1398 glyQ; glycyl-tRNA synthetase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D SIR_1397 glyS; glycyl-tRNA synthetase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D SIR_1686 gltX; glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D SIR_1053 hypothetical protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D SIR_0908 hypothetical protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
D SIR_0151 tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D SIR_0135 tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D SIR_0767 gid; tRNA uracil-5 methyltransferase K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D SIR_0652 trmD; tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D SIR_0943 hypothetical protein K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D SIR_0384 rRNA methylase/RNA methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D SIR_0368 putative rRNA methylase K03437 spoU; RNA methyltransferase, TrmH family
D SIR_1875 mnmA; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D SIR_1131 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D SIR_1625 hypothetical protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D SIR_1762 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D SIR_0915 thiI; thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D SIR_0012 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D SIR_0216 glycoprotein endopeptidase K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D SIR_0218 gcp; glycoprotease family protein K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D SIR_1420 hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D SIR_1457 hypothetical protein K27343 tmcAL; tRNA(Met) cytidine acetate ligase [EC:6.3.4.-]
D SIR_0718 vacB; exoribonuclease II K12573 rnr; ribonuclease R [EC:3.1.13.1]
D SIR_1585 pnpA; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:sib03012]
D SIR_1406 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D SIR_0626 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D SIR_0613 hypothetical protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D SIR_0130 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D SIR_1027 tuf; translation elongation factor EF-Tu K02358 tuf; elongation factor Tu
D SIR_0212 fusA; elongation factor G K02355 fusA; elongation factor G
D SIR_0783 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D SIR_1160 frr; ribosome-recycling factor K02838 frr; ribosome recycling factor
D SIR_0782 hemK; HemK protein K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D SIR_0006 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D SIR_1738 hypothetical protein K02518 infA; translation initiation factor IF-1
D SIR_0313 efp; elongation factor P K02356 efp; elongation factor P
D SIR_1105 prfB; peptide chain release factor 1 K02836 prfB; peptide chain release factor 2
D SIR_0436 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
C 03110 Chaperones and folding catalysts [BR:sib03110]
D SIR_0133 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D SIR_0397 clpE; putative ATP-dependent Clp protease subunit K03697 clpE; ATP-dependent Clp protease ATP-binding subunit ClpE
D SIR_1659 clpL; ATP-dependent Clp protease ATP-binding subunit ClpL K04086 clpL; ATP-dependent Clp protease ATP-binding subunit ClpL
D SIR_0893 clpX; ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D SIR_1523 dnaK; heat shock protein 70/molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D SIR_1626 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D SIR_1522 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D SIR_0136 hslO; molecular chaperone Hsp33 K04083 hslO; molecular chaperone Hsp33
D SIR_1524 grpE; heat shock protein K03687 GRPE; molecular chaperone GrpE
D SIR_1627 groS; chaperonin Cpn10 K04078 groES; chaperonin GroES
D SIR_1904 putative serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D SIR_0014 ftsH; cell division protein, putative K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D SIR_0485 atpB; ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D SIR_1402 putative serine protease K01361 E3.4.21.96; lactocepin [EC:3.4.21.96]
D SIR_1067 putative hydrolase protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D SIR_1168 ppiA; putative peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D SIR_1290 Cof family protein K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D SIR_1116 prsA; foldase protein PrsA K07533 prsA; foldase protein PrsA [EC:5.2.1.8]
D SIR_0255 trx; thioredoxin K03671 TXN; thioredoxin
C 04131 Membrane trafficking [BR:sib04131]
D SIR_0874 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D SIR_1069 putative hydrolase protein K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24]
D SIR_0213 gap; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D SIR_1767 gpm; putative phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D SIR_0426 gpmA; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D SIR_0535 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
C 04121 Ubiquitin system
C 03051 Proteasome
C 03032 DNA replication proteins [BR:sib03032]
D SIR_0424 histone-like protein K03530 hupB; DNA-binding protein HU-beta
D SIR_0001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D SIR_1871 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D SIR_1339 putative DNA replaication protein K02315 dnaC; DNA replication protein DnaC
D SIR_1000 hypothetical protein K02315 dnaC; DNA replication protein DnaC
D SIR_0808 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D SIR_0354 replication initiation and membrane attachment protein K03346 dnaB; replication initiation and membrane attachment protein
D SIR_0355 dnaI; primosomal protein DnaI K11144 dnaI; primosomal protein DnaI
D SIR_1637 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D SIR_0305 single strand binding protein K03111 ssb; single-strand DNA-binding protein
D SIR_0860 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D SIR_0533 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D SIR_1604 polC; DNA polymerase III subunit alpha, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D SIR_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D SIR_1158 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D SIR_1214 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D SIR_0658 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D SIR_0762 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D SIR_0251 rnhC; ribonuclease HIII K03471 rnhC; ribonuclease HIII [EC:3.1.26.4]
D SIR_1766 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D SIR_0741 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D SIR_0812 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D SIR_1096 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D SIR_0821 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D SIR_0823 parE; topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D SIR_0765 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D SIR_1325 putative DNA topoisomerase K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
D SIR_0986 putative DNA topoisomerase K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:sib03036]
D SIR_0926 rnc; RNase III: ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D SIR_0424 histone-like protein K03530 hupB; DNA-binding protein HU-beta
D SIR_0001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D SIR_1259 dps; putative DNA-binding ferritin-like protein K04047 dps; starvation-inducible DNA-binding protein
D SIR_0925 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein
D SIR_0378 scpA; segregation and condensation protein A, ScpA K05896 scpA; segregation and condensation protein A
D SIR_0379 scpB; segregation and condensation protein B, ScpB K06024 scpB; segregation and condensation protein B
D SIR_1251 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D SIR_0009 hypothetical protein K13052 divIC; cell division protein DivIC
D SIR_1104 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D SIR_1166 ftsK; putative cell division protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D SIR_0175 hypothetical protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D SIR_1390 ftsL; cell division protein FtsL K03586 ftsL; cell division protein FtsL
D SIR_1252 divIB; putative cell division protein K03589 ftsQ; cell division protein FtsQ
D SIR_1031 hypothetical protein K03588 ftsW; cell division protein FtsW
D SIR_1103 ftsX; cell division ABC transporter K09811 ftsX; cell division transport system permease protein
D SIR_1250 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D SIR_1095 ezrA; septation ring formation regulator EzrA K06286 ezrA; septation ring formation regulator
D SIR_1245 divIVA; putative cell division protein DivIVA K04074 divIVA; cell division initiation protein
D SIR_1248 hypothetical protein K09772 sepF; cell division inhibitor SepF
D SIR_0038 mreC; putative cell shape-determining protein K03570 mreC; rod shape-determining protein MreC
D SIR_0039 hypothetical protein K03571 mreD; rod shape-determining protein MreD
D SIR_1099 rodA; putative rod-shape determing protein RodA K05837 rodA; rod shape determining protein RodA
D SIR_1905 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SIR_0821 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D SIR_0823 parE; topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D SIR_1874 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D SIR_0342 rsmG; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D SIR_0767 gid; tRNA uracil-5 methyltransferase K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D SIR_1565 hypothetical protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D SIR_0686 fic; putative fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D SIR_0892 ysxC; putative ribosome biogenesis GTP-binding protein YsxC K03978 engB; GTP-binding protein
D SIR_0871 hypothetical protein K09762 whiA; cell division protein WhiA
C 03400 DNA repair and recombination proteins [BR:sib03400]
D SIR_1211 ogt; methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D SIR_0724 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D SIR_1848 putative DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D SIR_0571 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D SIR_1209 nth; putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D SIR_0814 hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SIR_1618 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SIR_0365 mutT; putative mutT like protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SIR_0223 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SIR_0941 putative phosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SIR_0394 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SIR_0725 mutX; mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SIR_1689 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D SIR_1807 tag; putative DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D SIR_0713 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D SIR_1207 xth; putative exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D SIR_0532 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D SIR_0741 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D SIR_1766 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D SIR_0310 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D SIR_0884 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D SIR_1040 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D SIR_0539 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D SIR_0979 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D SIR_1678 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D SIR_1677 rpoC; DNA-directed RNA polymerase, subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D SIR_1734 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D SIR_1515 rpoE; DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta
D SIR_1299 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D SIR_0007 trcF; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D SIR_1814 hexA; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D SIR_0253 mutS2; DNA mismatch repair protein mutS K07456 mutS2; DNA mismatch repair protein MutS2
D SIR_1811 hexB; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D SIR_0412 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D SIR_0413 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D SIR_0533 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D SIR_1604 polC; DNA polymerase III subunit alpha, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D SIR_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D SIR_1158 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D SIR_1214 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D SIR_0658 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D SIR_1637 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D SIR_0305 single strand binding protein K03111 ssb; single-strand DNA-binding protein
D SIR_0860 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D SIR_0249 recD; exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D SIR_1803 recA; recombinase A K03553 recA; recombination protein RecA
D SIR_1808 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D SIR_0078 ruvB; Holliday junction DNA helicase B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D SIR_1298 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D SIR_1687 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms
D SIR_1889 recF; DNA replication and repair protein K03629 recF; DNA replication and repair protein RecF
D SIR_1479 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D SIR_0984 DNA binding protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D SIR_0043 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D SIR_0428 recR; recombination protein RecR equivalog K06187 recR; recombination protein RecR
D SIR_0417 recN; putative DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D SIR_1347 recU; Holliday junction resolvase RecU K03700 recU; recombination protein U
D SIR_0478 rexA; ATP-dependent nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D SIR_0477 rexB; ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D SIR_0755 cas1; CRISPR-associated Cas1 family protein K15342 cas1; CRISP-associated protein Cas1
D SIR_0812 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D SIR_1096 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D SIR_0765 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D SIR_0424 histone-like protein K03530 hupB; DNA-binding protein HU-beta
D SIR_0248 dinP; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D SIR_1286 recX; recombination regulator RecX K03565 recX; regulatory protein
D SIR_1101 dinG; putative DnaQ family exonuclease/DinG family helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D SIR_1044 nrdE; ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D SIR_1046 nrdF; ribonucleotide-diphosphate reductase, subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D SIR_0457 DHH subfamily 1 protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:sib03029]
D SIR_1406 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D SIR_0626 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D SIR_0130 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D SIR_1027 tuf; translation elongation factor EF-Tu K02358 tuf; elongation factor Tu
D SIR_0212 fusA; elongation factor G K02355 fusA; elongation factor G
D SIR_0711 era; GTP-binding protein Era K03595 era; GTPase
D SIR_1680 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D SIR_1607 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D SIR_1828 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SIR_1472 aspS1; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SIR_1816 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D SIR_1470 gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D SIR_1469 gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D SIR_1471 gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D SIR_1637 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D SIR_0305 single strand binding protein K03111 ssb; single-strand DNA-binding protein
D SIR_0860 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D SIR_1523 dnaK; heat shock protein 70/molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D SIR_1524 grpE; heat shock protein K03687 GRPE; molecular chaperone GrpE
D SIR_1626 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D SIR_1627 groS; chaperonin Cpn10 K04078 groES; chaperonin GroES
D SIR_1522 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D SIR_0916 putative cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SIR_0564 csdA; putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SIR_0159 hypothetical protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D SIR_0366 yidC; OxaA-like protein precursor K03217 yidC; YidC/Oxa1 family membrane protein insertase
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:sib02000]
D SIR_0542 putative ABC transporter, ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D SIR_0543 putative ABC transporter, ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D SIR_0751 ABC transporter permease/ATPase K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D SIR_0752 ABC-type multidrug transport system, permease component K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D SIR_0590 putative antibiotic ABC transporter ATP-binding protein K20485 nisT; ATP-binding cassette, subfamily B, bacterial NisT/SpaT
D SIR_0498 putative ABC transporter ATP-binding/permease protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D SIR_0889 putative ATP-binding/permease protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D SIR_1498 lmrA1; putative ABC-type multidrug transport system protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D SIR_1497 lmrA2; putative ABC transporter K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D SIR_0499 putative ABC transporter ATP-binding/permease protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D SIR_0888 putative multidrug ABC transporter permease/ATPase K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D SIR_0707 ABC-type transport system, ATPase and permease component K18216 steA; ATP-binding cassette, subfamily B, tetracycline resistant protein
D SIR_0708 putative ABC transporter K18217 steB; ATP-binding cassette, subfamily B, tetracycline resistant protein
D SIR_1155 putative ABC-type bacteriocin transporter K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter
D SIR_1554 hypothetical protein K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter
D SIR_0516 putative ABC transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein
D SIR_0642 potD; spermidine/putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D SIR_0641 potC; spermidine/putrescine transport system permease protein K11070 potC; spermidine/putrescine transport system permease protein
D SIR_0640 potB; spermidine/putrescine transport system permease protein K11071 potB; spermidine/putrescine transport system permease protein
D SIR_0639 potA; spermidine/putrescine transport ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D SIR_1035 putative ABC transporter K05845 opuC; osmoprotectant transport system substrate-binding protein
D SIR_1034 putative ABC transporter K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D SIR_1580 ABC transporter, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D SIR_1821 malX; maltose/maltodextrin-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D SIR_1822 malC; maltose/maltodextrin transport system permease protein K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D SIR_1823 malD; maltose/maltodextrin transport system permease protein K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D SIR_1064 putative transporter protein K17318 lplA; putative aldouronate transport system substrate-binding protein
D SIR_1066 putative transporter protein K17319 lplB; putative aldouronate transport system permease protein
D SIR_1065 putative transporter protein K17320 lplC; putative aldouronate transport system permease protein
D SIR_1636 putative periplasmic sugar-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D SIR_0406 msmE; ABC transporter, substrate-binding protein K10120 msmE; fructooligosaccharide transport system substrate-binding protein
D SIR_0407 msmF; ABC transporter, permease protein K10121 msmF; fructooligosaccharide transport system permease protein
D SIR_0408 msmG; ABC transporter, permease protein K10122 msmG; fructooligosaccharide transport system permease protein
D SIR_0850 putative lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D SIR_0848 putative ABC transporter, permease protein K23535 nupB; general nucleoside transport system permease protein
D SIR_0847 putative ABC transporter, permease protein K23536 nupC; general nucleoside transport system permease protein
D SIR_0849 putative ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D SIR_0088 sugar ABC transporter, sugar-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D SIR_1633 putative sugar-binding periplasmic protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D SIR_0089 putative ABC transporter permease protein yurN K02025 ABC.MS.P; multiple sugar transport system permease protein
D SIR_0090 sugar ABC transporter, sugar-binding protein K02026 ABC.MS.P1; multiple sugar transport system permease protein
D SIR_0555 pstS; putative ABC transporter, phosphate transport system K02040 pstS; phosphate transport system substrate-binding protein
D SIR_0556 pstC; putative phosphate transport protein K02037 pstC; phosphate transport system permease protein
D SIR_0557 pstA; phosphate transport system permease protein K02038 pstA; phosphate transport system permease protein
D SIR_0558 pstB2; phosphate transport system, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D SIR_0559 pstB1; phosphate transport system, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D SIR_0885 putative glutamine ABC transporter/glutamine-binding protein K10036 glnH; glutamine transport system substrate-binding protein
D SIR_0886 ABC transporter, ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D SIR_1454 ABC transporter, substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D SIR_1357 inner membrane amino-acid ABC transporter permease protein K10009 tcyB; L-cystine transport system permease protein
D SIR_1356 ABC transport system, ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D SIR_1223 ABC-type transport system, periplasmic binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D SIR_1222 branched chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D SIR_1221 putative ABC transporter membrane-spanning permease K01998 livM; branched-chain amino acid transport system permease protein
D SIR_1220 putative branched-chain amino acid transport protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D SIR_1219 branched-chain amino acid transport protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D SIR_1453 hlpA; putative lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D SIR_1450 putative ABC transporter permease protein K02072 metI; D-methionine transport system permease protein
D SIR_1451 metN; methionine import ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D SIR_0465 ABC transporter substrate binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein
D SIR_0466 putative ABC transporter permease component K05832 K05832; putative tryptophan/tyrosine transport system permease protein
D SIR_0467 putative ABC transporter ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein
D SIR_1368 ABC uptake transporter substrate binding protein/membrane-spanning protein K17073 lysX1; putative lysine transport system substrate-binding protein
D SIR_1369 polar amino acid transport system, ATP-binding protein K17076 lysY; putative lysine transport system ATP-binding protein
D SIR_1387 putative extracellular solute-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D SIR_1511 aliA; oligopeptide-binding protein AliA K15580 oppA; oligopeptide transport system substrate-binding protein
D SIR_1512 amiA; oligopeptide-binding protein AmiA K15580 oppA; oligopeptide transport system substrate-binding protein
D SIR_1510 amiC; oligopeptide transport system permease protein AmiC K15581 oppB; oligopeptide transport system permease protein
D SIR_1509 amiD; oligopeptide transport system permease protein AmiD K15582 oppC; oligopeptide transport system permease protein
D SIR_1508 amiE; oligopeptide transport ATP-binding protein AmiE K15583 oppD; oligopeptide transport system ATP-binding protein
D SIR_1507 amiF; oligopeptide transport ATP-binding protein AmiF K10823 oppF; oligopeptide transport system ATP-binding protein
D SIR_0419 fatB; putative ABC transporter, periplasmic component K25282 yclQ; iron-siderophore transport system substrate-binding protein
D SIR_0421 fatC; putative ABC transporter permease K25283 yclO; iron-siderophore transport system permease protein
D SIR_0422 fatD; putative iron compound ABC transporter permease protein K25284 yclN; iron-siderophore transport system permease protein
D SIR_0420 fatA; iron complex transport system ATP-binding protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D SIR_0119 adcA; zinc-binding lipoprotein AdcA K09815 znuA; zinc transport system substrate-binding protein
D SIR_0653 metal binding lipoprotein K09815 znuA; zinc transport system substrate-binding protein
D SIR_0118 adcB; ABC transporter permease K09816 znuB; zinc transport system permease protein
D SIR_0117 adcC; putative zinc transport system ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D SIR_1611 putative metal ABC transporter substrate-binding lipoprotein K19971 psaA; manganese/zinc transport system substrate-binding protein
D SIR_1610 ABC transporter, permease component K19972 psaC; manganese/zinc transport system permease protein
D SIR_1609 putative ABC transporter, ATP-binding protein K10830 psaB; manganese/zinc transport system ATP-binding protein [EC:7.2.2.5]
D SIR_0521 bioY; putative biotin synthase K03523 bioY; biotin transport system substrate-specific component
D SIR_0332 hypothetical protein K16924 mtsT; energy-coupling factor transport system substrate-specific component
D SIR_1881 cbiQ; putative cobalt transport protein CbiQ K16785 ecfT; energy-coupling factor transport system permease protein
D SIR_0293 hypothetical protein K16785 ecfT; energy-coupling factor transport system permease protein
D SIR_0339 ABC transporter permease protein K16785 ecfT; energy-coupling factor transport system permease protein
D SIR_1883 cbiO2; cobalt import ATP-binding protein K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D SIR_1882 cbiO1; cobalt import ATP-binding protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D SIR_0338 putative ABC transporter ATP-binding protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D SIR_0294 putative ABC transporter ATP-binding protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D SIR_0295 hypothetical protein K16925 ykoE; energy-coupling factor transport system permease protein
D SIR_1191 putative ABC transporter protein K11051 cylB; multidrug/hemolysin transport system permease protein
D SIR_1192 ABC transporter protein K11050 cylA; multidrug/hemolysin transport system ATP-binding protein
D SIR_0964 hypothetical protein K20491 nisE; lantibiotic transport system permease protein
D SIR_0963 hypothetical protein K20492 nisG; lantibiotic transport system permease protein
D SIR_0965 putative ATP-binding protein K20490 nisF; lantibiotic transport system ATP-binding protein
D SIR_1186 putative ABC transporter permease K19084 braE; bacitracin transport system permease protein
D SIR_1193 putative permease protein K19084 braE; bacitracin transport system permease protein
D SIR_1187 putative ABC transporter ATP-binding protein K19083 braD; bacitracin transport system ATP-binding protein
D SIR_1194 putative ABC transporter ATP-binding protein K19083 braD; bacitracin transport system ATP-binding protein
D SIR_1103 ftsX; cell division ABC transporter K09811 ftsX; cell division transport system permease protein
D SIR_1104 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D SIR_0799 hypothetical protein K25154 evrC; viologen exporter family transport system permease protein
D SIR_0798 putative ABC transporter, permease protein K25155 evrB; viologen exporter family transport system permease protein
D SIR_0797 ABC transporter, ATP-binding protein K25156 evrA; viologen exporter family transport system ATP-binding protein
D SIR_1414 ABC transporter permease protein K25157 ecsB; ABC-2 type transport system permease protein
D SIR_1415 ABC-type multidrug transport system/ATPase component K25158 ecsA; ABC-2 type transport system ATP-binding protein
D SIR_1374 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D SIR_1552 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D SIR_1526 transport system permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D SIR_0290 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D SIR_0947 rgpC; putative polysaccharide ABC transporter, permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D SIR_0476 putative ABC transporter, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein
D SIR_0145 putative ABC transporter, permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D SIR_0231 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D SIR_1375 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D SIR_1553 hypothetical protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D SIR_1527 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D SIR_1315 putative ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D SIR_0144 putative ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D SIR_0291 ABC transporter protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D SIR_0946 rgpD; putative polysaccharide ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D SIR_0475 putative ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D SIR_1087 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein
D SIR_0400 ABC superfamily ATP binding cassette transporter K02004 ABC.CD.P; putative ABC transport system permease protein
D SIR_0402 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein
D SIR_0268 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein
D SIR_0269 ABC superfamily ATP binding cassette transporter K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D SIR_1088 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D SIR_0401 putative ABC transporter, ATP binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D SIR_1363 sufC; FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D SIR_0786 matE efflux family protein K26939 norM; MATE family, multidrug efflux pump
D SIR_0110 putative MATE family transporter K26937 dinF; MATE family, multidrug efflux pump
D SIR_0277 putative efflux protein K26937 dinF; MATE family, multidrug efflux pump
D SIR_1127 putative major facilitator superfamily sugar transporter K02532 lacY; MFS transporter, OHS family, lactose permease
D SIR_1847 major facilitator superfamily transporter K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D SIR_0715 MFS-type transporter K08161 mdtG; MFS transporter, DHA1 family, multidrug resistance protein
D SIR_0594 putative transporter K18926 lmrB; MFS transporter, DHA2 family, lincomycin resistance protein
D SIR_1041 ptsI; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D SIR_1042 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D SIR_0349 glucose-specific enzyme K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D SIR_1769 putative PTS enzyme K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D SIR_0350 PTS system glucose-specific EIICBA component K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208]
D SIR_0097 PTS system, sucrose-specific IIB component protein K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D SIR_1503 scrA; PTS system, sucrose-specific IIABC component K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D SIR_1239 putative PTS system, enzyme II K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D SIR_0511 fruA; putative PTS system, fructose-specific enzyme IIABC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D SIR_0450 lacF; PTS system, lactose-specific IIA component K02786 lacF; lactose PTS system EIIA component [EC:2.7.1.207]
D SIR_0451 lacE; PTS system, lactose-specific IIBC component K02788 lacE; lactose PTS system EIICB component [EC:2.7.1.207]
D SIR_1082 PTS system, IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D SIR_1122 celC1; putative PTS system, cellobiose-specific IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D SIR_0275 PTS system, IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D SIR_1081 PTS system, cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D SIR_1124 celB; PTS system, IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D SIR_0274 PTS system, lactose/cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D SIR_1080 PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D SIR_1120 celD; putative phosphotransferase (PTS) system K02761 celB; cellobiose PTS system EIIC component
D SIR_1494 PTS system, lactose/cellobiose family IIC component K02761 celB; cellobiose PTS system EIIC component
D SIR_0271 PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D SIR_0678 component of a phospotransferase system K02761 celB; cellobiose PTS system EIIC component
D SIR_0444 PTS system enzyme IIBC component K20112 gatA; galactose PTS system EIIA component [EC:2.7.1.204]
D SIR_0445 putative PTS system, IIB component K20113 gatB; galactose PTS system EIIB component [EC:2.7.1.204]
D SIR_0446 putative PTS system IIC component K20114 gatC; galactose PTS system EIIC component
D SIR_1425 manL; putative phosphotransferase system, mannose-specific EIIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D SIR_0073 putative PTS system, mannose-specific IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D SIR_1426 manM; PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D SIR_1630 phosphotransferase system, IIC component K02795 manY; mannose PTS system EIIC component
D SIR_0071 putative PTS phosphotransferase system sugar-specific EIIC component K02795 manY; mannose PTS system EIIC component
D SIR_1427 manN; PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component
D SIR_0072 putative mannose permease IID component K02796 manZ; mannose PTS system EIID component
D SIR_1541 PTS system, N-acetylgalactosamine-specific IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D SIR_1632 PTS system, sugar-specific IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D SIR_1539 PTS system, N-acetylgalactosamine-specific IIB component K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D SIR_1538 PTS system, N-acetylgalactosamine-specific IIC component K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D SIR_1537 PTS system, N-acetylgalactosamine-specific IID component K02747 agaE; N-acetylgalactosamine PTS system EIID component
D SIR_1656 ptxA; putative phosphotransferase system sugar-specific EII component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D SIR_1657 putative phosphotransferase system sugar-specific EII component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D SIR_1658 sgaT; putative sugar-specific permease, SgaT/UlaA K03475 ulaA; ascorbate PTS system EIIC component
D SIR_0235 glpF; putative glycerol uptake facilitator protein K02440 glpF; glycerol uptake facilitator
D SIR_0809 mscL; putative large conductance mechano-sensitive ion channel K03282 mscL; large conductance mechanosensitive channel
D SIR_0260 small-conductance mechanosensitive channel K22044 ybiO; moderate conductance mechanosensitive channel
D SIR_0309 corA1; magnesium and cobalt transporter K03284 corA; magnesium transporter
D SIR_1241 hlyX; putative hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
D SIR_0392 putative transport protein K24163 nhaK; monovalent cation/hydrogen antiporter
D SIR_1394 trkH; potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein
D SIR_0382 trkG; cation transport protein K03498 trkH; trk/ktr system potassium uptake protein
D SIR_1395 trkA1; trk family potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein
D SIR_0383 trkA; Trk family potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein
D SIR_0868 pyrP; xanthinge/uracil permease K02824 uraA; uracil permease
D SIR_0787 pbuX; xanthine permease K16169 pbuX; xanthine permease
D SIR_1421 putative xanthine/uracil permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D SIR_0792 voltage-gated chloride channel family protein K03281 clcA; chloride channel protein, CIC family
D SIR_0897 putative permease, chloride channel K03281 clcA; chloride channel protein, CIC family
D SIR_1404 hypothetical protein K03324 yjbB; phosphate:Na+ symporter
D SIR_0585 putative permease K24180 mleP; malate permease and related proteins
D SIR_0386 hypothetical protein K23675 fmnP; riboflavin transporter
D SIR_0747 hypothetical protein K16788 niaX; niacin transporter
D SIR_1411 hypothetical protein K22736 VIT; vacuolar iron transporter family protein
D SIR_1031 hypothetical protein K03588 ftsW; cell division protein FtsW
D SIR_1125 hypothetical protein K15383 K15383; MtN3 and saliva related transmembrane protein
D SIR_0804 ccdA; cytochrome c-type biogenesis protein K06196 ccdA; cytochrome c-type biogenesis protein
D SIR_1154 putative bacteriocin secretion accessory protein K20345 blpB; membrane fusion protein, peptide pheromone/bacteriocin exporter
D SIR_1784 wze; capsular exopolysaccharide family protein K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D SIR_1785 wzd; putative capsular polysaccharide biosynthesis protein K19420 epsA; protein tyrosine kinase modulator
C 02044 Secretion system [BR:sib02044]
D SIR_1247 hypothetical protein K02221 yggT; YggT family protein
D SIR_0720 comEA; putative competance protein K02237 comEA; competence protein ComEA
D SIR_0826 putative ComE operon protein 2 family K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D SIR_0721 comEC; competence protein K02238 comEC; competence protein ComEC
D SIR_1269 comFA; putative ATP-dependent RNA helicase K02240 comFA; competence protein ComFA
D SIR_1268 comFC; putative competence protein FC K02242 comFC; competence protein ComFC
D SIR_1669 comYA; putative competence protein ComYA K02243 comGA; competence protein ComGA
D SIR_1668 comYB; putative competence protein K02244 comGB; competence protein ComGB
D SIR_1667 comYC; competence protein K02245 comGC; competence protein ComGC
D SIR_1666 comYD; competence protein K02246 comGD; competence protein ComGD
D SIR_1664 comGF; competence protein K02248 comGF; competence protein ComGF
D SIR_1260 pilD; putative type 4 prepilin peptidase K02236 comC; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D SIR_1336 putative conjugal transfer protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D SIR_0998 hypothetical protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D SIR_1483 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D SIR_0717 secG; putative preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D SIR_1740 secY; preprotein translocase subunit K03076 secY; preprotein translocase subunit SecY
D SIR_0772 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D SIR_0922 ftsY; cell division protein K03110 ftsY; fused signal recognition particle receptor
D SIR_1649 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D SIR_1536 yajC1; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D SIR_0159 hypothetical protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D SIR_0366 yidC; OxaA-like protein precursor K03217 yidC; YidC/Oxa1 family membrane protein insertase
C 02042 Bacterial toxins [BR:sib02042]
D SIR_0115 ily; intermedilysin protein K11031 slo; thiol-activated cytolysin
D SIR_1241 hlyX; putative hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
D SIR_0846 putative hemolysin III family K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:sib02022]
D SIR_0929 vicK; putative histidine sensory kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3]
D SIR_0930 vicR; putative response transcriptional regulator K07668 vicR; two-component system, OmpR family, response regulator VicR
D SIR_1771 saeS; histidine kinase K10681 saeS; two-component system, OmpR family, sensor histidine kinase SaeS [EC:2.7.13.3]
D SIR_1772 saeR; DNA-binding response regulator K10682 saeR; two-component system, OmpR family, response regulator SaeR
D SIR_1196 putative signal transduction histidine kinase K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3]
D SIR_1198 putative response regulator K19082 braR; two-component system, OmpR family, response regulator protein BraR/BceR
D SIR_0858 ciaH; putative sensor histidine kinase K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3]
D SIR_0859 ciaR; two-component response transcriptional regulator K14983 ciaR; two-component system, OmpR family, response regulator CiaR
D SIR_1092 putative two component system histidine kinase K18986 ihk; two-component system, OmpR family, sensor kinase Ihk [EC:2.7.13.3]
D SIR_1093 putative two-component response regulator K18987 irr; two-component system, OmpR family, response regulator Irr
D SIR_0966 hypothetical protein K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D SIR_0967 putative response regulator K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D SIR_1373 histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D SIR_1372 two-component response transcriptional regulator K07693 desR; two-component system, NarL family, response regulator DesR
D SIR_1292 putative histidine kinase K11617 liaS; two-component system, NarL family, sensor histidine kinase LiaS [EC:2.7.13.3]
D SIR_1291 rr03; putative two-component response regulator K11618 liaR; two-component system, NarL family, response regulator LiaR
D SIR_1152 putative histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3]
D SIR_1151 putative response regulator K07707 agrA; two-component system, LytTR family, response regulator AgrA
D SIR_1900 comD; histidine kinase K12294 comD; two-component system, LytTR family, sensor histidine kinase ComD [EC:2.7.13.3]
D SIR_1899 comE; response regulator K12295 comE; two-component system, LytTR family, response regulator ComE
D SIR_1190 hypothetical protein K02477 K02477; two-component system, LytTR family, response regulator
D SIR_0800 putative histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D SIR_1062 putative histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D SIR_1061 putative response regulator K07720 yesN; two-component system, response regulator YesN
D SIR_0801 rr09; putative two-component response transcriptional regulator K07720 yesN; two-component system, response regulator YesN
C 02035 Bacterial motility proteins [BR:sib02035]
D SIR_1454 ABC transporter, substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:sib04812]
D SIR_1250 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D SIR_1251 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D SIR_1905 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:sib04147]
D SIR_0832 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D SIR_0213 gap; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D SIR_1676 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D SIR_0535 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D SIR_1168 ppiA; putative peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D SIR_1626 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D SIR_1523 dnaK; heat shock protein 70/molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D SIR_0155 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D SIR_1890 guaB; inosine-5-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D SIR_1027 tuf; translation elongation factor EF-Tu K02358 tuf; elongation factor Tu
D SIR_1416 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D SIR_0813 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D SIR_1739 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D SIR_0503 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D SIR_0669 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D SIR_0479 glgB; glycogen branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D SIR_0156 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D SIR_1671 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SIR_0053 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D SIR_0593 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D SIR_1893 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D SIR_1026 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D SIR_1767 gpm; putative phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D SIR_0426 gpmA; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:sib02048]
D SIR_0755 cas1; CRISPR-associated Cas1 family protein K15342 cas1; CRISP-associated protein Cas1
D SIR_0756 cas2; CRISPR-associated CAS2 family protein K09951 cas2; CRISPR-associated protein Cas2
D SIR_0754 csn1; CRISPR-associated protein K09952 csn1; CRISPR-associated endonuclease Csn1 [EC:3.1.-.-]
D SIR_0682 hsdR; type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D SIR_0685 hsdS; putative type I S-subunit protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D SIR_0688 putative type I restriction enzyme, S subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D SIR_0690 putative type I restriction-modification system specificity subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D SIR_0687 hsdM; type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D SIR_1662 adenine-specific DNA methylase K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
D SIR_0284 mcrB; endonuclease, putative K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-]
D SIR_0150 putative restriction endonuclease K07448 mrr; restriction system protein
D SIR_1699 hypothetical protein K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-]
D SIR_1698 hypothetical protein K07473 dinJ; DNA-damage-inducible protein J
D SIR_1167 hypothetical protein K03973 pspC; phage shock protein C
D SIR_0600 hypothetical protein K03973 pspC; phage shock protein C
D SIR_1250 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D SIR_0821 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D SIR_0823 parE; topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D SIR_0916 putative cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SIR_0564 csdA; putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:sib01504]
D SIR_0822 putative aminoglycoside adenylyltransferase K05593 aadK; aminoglycoside 6-adenylyltransferase [EC:2.7.7.-]
D SIR_1285 putative aminoglycoside 3'-phosphotransferase K00897 aphA; kanamycin kinase [EC:2.7.1.95]
D SIR_0707 ABC-type transport system, ATPase and permease component K18216 steA; ATP-binding cassette, subfamily B, tetracycline resistant protein
D SIR_0708 putative ABC transporter K18217 steB; ATP-binding cassette, subfamily B, tetracycline resistant protein
D SIR_1855 dltA; putative D-alanine-poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D SIR_1854 dltB; putative membrane protein involved in D-alanine export K03739 dltB; membrane protein involved in D-alanine export
D SIR_1853 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13]
D SIR_1852 dltD; putative D-alanine transfer protein DltD K03740 dltD; D-alanine transfer protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:sib03100]
D SIR_0018 trnaA; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SIR_1448 trnaA; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SIR_1730 trnaA; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SIR_0318 trnaA; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SIR_0028 trnaR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SIR_0328 trnaR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SIR_0329 trnaR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SIR_0815 trnaR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SIR_0862 trnaR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SIR_1902 trnaR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SIR_1445 trnaN; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SIR_1897 trnaN; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SIR_0022 trnaD; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D SIR_0322 trnaD; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D SIR_0128 trnaC; tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D SIR_0817 trnaQ; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D SIR_1717 trnaQ; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D SIR_1724 trnaE; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SIR_1898 trnaE; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SIR_0035 trnaG; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SIR_1726 trnaG; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SIR_0326 trnaG; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SIR_0026 trnaG; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SIR_1718 trnaH; tRNA-His K14226 tRNA-His; tRNA His
D SIR_1725 trnaI; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D SIR_0036 trnaI; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D SIR_0202 trnaL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SIR_0027 trnaL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SIR_0327 trnaL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SIR_1383 trnaL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SIR_1386 trnaL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SIR_1716 trnaL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SIR_0024 trnaL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SIR_0324 trnaL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SIR_1621 trnaK; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SIR_0023 trnaK; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SIR_0323 trnaK; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SIR_0031 trnaM; tRNA-Met K14230 tRNA-Met; tRNA Met
D SIR_0030 trnaM; tRNA-Met K14230 tRNA-Met; tRNA Met
D SIR_0033 trnaM; tRNA-Met K14230 tRNA-Met; tRNA Met
D SIR_1722 trnaM; tRNA-Met K14230 tRNA-Met; tRNA Met
D SIR_0034 trnaF; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D SIR_1721 trnaF; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D SIR_0029 trnaP; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D SIR_0330 trnaP; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D SIR_0032 trnaS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SIR_1723 trnaS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SIR_0037 trnaS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SIR_0501 trnaS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SIR_0201 trnaS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SIR_0025 trnaT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SIR_0325 trnaT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SIR_0705 trnaT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SIR_1381 trnaT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SIR_1719 trnaW; tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D SIR_0818 trnaY; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D SIR_1720 trnaY; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D SIR_0021 trnaV; tRNA-Val K14237 tRNA-Val; tRNA Val
D SIR_0321 trnaV; tRNA-Val K14237 tRNA-Val; tRNA Val
D SIR_1727 trnaV; tRNA-Val K14237 tRNA-Val; tRNA Val
D SIR_0017 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SIR_0317 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SIR_1731 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SIR_1449 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SIR_0019 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SIR_1729 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SIR_1447 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SIR_0319 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SIR_0020 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SIR_1728 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SIR_1446 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SIR_0320 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D SIR_1542 gluconate 5-dehydrogenase K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69]
D SIR_1894 hypothetical protein K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10]
D SIR_1342 ahpF; alkyl hydroperoxide reductase subunit F K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-]
D SIR_0802 msrA; putative peptide methionine sulfoxide reductase K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
D SIR_0265 msr; peptide-methionine (S)-S-oxide reductase msrA/msrB K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
D SIR_1343 ahpC; alkyl hydroperoxide reductase subunit C K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D SIR_0507 trxB1; putative thioredoxin reductase K21567 fnr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D SIR_1788 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D SIR_1085 putative glycyl-radical enzyme activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D SIR_1236 pflA; pyruvate formate lyase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D SIR_1345 hypothetical protein K07444 ypsC; putative N6-adenine-specific DNA methylase [EC:2.1.1.-]
D SIR_0519 GNAT family acetyltransferase K22441 paiA; diamine N-acetyltransferase [EC:2.3.1.57]
D SIR_1617 putative acetyltransferase K22441 paiA; diamine N-acetyltransferase [EC:2.3.1.57]
D SIR_0763 acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D SIR_0603 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D SIR_0794 hypothetical protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D SIR_1376 putative kinase K07030 fakA; fatty acid kinase [EC:2.7.2.18]
D SIR_0918 hypothetical protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D SIR_0617 hypothetical protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85]
D SIR_0602 hprK; HPr kinase/phosphorylase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
D SIR_0610 estA; putative tributyrin esterase K03930 estA; putative tributyrin esterase [EC:3.1.1.-]
D SIR_1786 cpsB; protein-tyrosine phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D SIR_1465 HAD superfamily phosphatase K07015 yqeG; putative phosphatase [EC:3.1.3.-]
D SIR_1873 hypothetical protein K22927 gdpP; cyclic-di-AMP phosphodiesterase [EC:3.1.4.59]
D SIR_0164 tatD; putative deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D SIR_0165 putative primase-related protein K05985 rnmV; ribonuclease M5 [EC:3.1.26.8]
D SIR_0292 dexB; putative glucan 1,6-alpha-glucosidase K01215 dexB; glucan 1,6-alpha-glucosidase [EC:3.2.1.70]
D SIR_1540 glucuronyl hydrolase K18581 ugl; unsaturated chondroitin disaccharide hydrolase [EC:3.2.1.180]
D SIR_1128 dacA1; putative D-alanyl-D-alanine carboxypeptidase K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
D SIR_1600 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D SIR_1501 def1; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D SIR_0630 hypothetical protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D SIR_0661 hypothetical protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D SIR_0404 hypothetical protein K17758 nnrD; ADP-dependent NAD(P)H-hydrate dehydratase [EC:4.2.1.136]
D SIR_1547 hyaluronate lyase precursor K01727 hysA; hyaluronate lyase [EC:4.2.2.1]
D SIR_1107 putative calcium-translocating P-type ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D SIR_1846 cadmium-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D SIR_1227 mgt; translocating P-type ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]
D SIR_1165 aha1; putative cation-transporting ATPase K12952 ctpE; cation-transporting P-type ATPase E [EC:7.2.2.-]
D SIR_1051 putative cation transporter E1-E2 family ATPase K12952 ctpE; cation-transporting P-type ATPase E [EC:7.2.2.-]
C 99981 Carbohydrate metabolism
D SIR_1218 putative acetoin utilization protein AcuB K04767 acuB; acetoin utilization protein AcuB
C 99982 Energy metabolism
D SIR_0623 hypothetical protein K05337 fer; ferredoxin
D SIR_1360 SUF system FeS assembly protein K04488 iscU; nitrogen fixation protein NifU and related proteins
D SIR_0810 merA; pyridine nucleotide-disulfide oxidoreductase K21739 rclA; probable pyridine nucleotide-disulfide oxidoreductase
C 99983 Lipid metabolism
D SIR_0513 hypothetical protein K25232 fakB; fatty acid kinase fatty acid binding subunit
D SIR_0423 putative DegV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit
C 99984 Nucleotide metabolism
D SIR_1817 putative ribonucleotide reduction protein K03647 nrdI; protein involved in ribonucleotide reduction
D SIR_0497 endA; putative DNA-entry endonuclease K15051 endA; DNA-entry nuclease
C 99985 Amino acid metabolism
D SIR_1249 hypothetical protein K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
C 99987 Cofactor metabolism
C 99988 Secondary metabolism
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D SIR_1181 putative major cold shock protein K03704 cspA; cold shock protein
D SIR_0551 yjbD; transcriptional regulator Spx K16509 spxA; regulatory protein spx
D SIR_1802 spxA; transcriptional regulator Spx K16509 spxA; regulatory protein spx
D SIR_0598 putative transcriptional accessory protein K06959 tex; protein Tex
C 99974 Translation
D SIR_1289 general stress protein K07570 GSP13; general stress protein 13
C 99975 Protein processing
D SIR_1516 tig; trigger factor K03545 tig; trigger factor
D SIR_0719 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D SIR_1043 nrdH; putative glutaredoxin-like protein NrdH K06191 nrdH; glutaredoxin-like protein NrdH
D SIR_1365 mecA; adapter protein MecA K16511 mecA1_2; adapter protein MecA 1/2
C 99976 Replication and repair
D SIR_0388 DNA methyltransferase protein K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D SIR_0561 radC; putative DNA repair protein K03630 radC; DNA repair protein RadC
D SIR_0206 rmuC; putative DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC
D SIR_0980 hypothetical protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D SIR_0454 putative endonuclease K07461 K07461; putative endonuclease
D SIR_0764 dprA; DNA protecting protein K04096 smf; DNA processing protein
D SIR_0505 dnaD; putative DNA replication protein K02086 dnaD; DNA replication protein
D SIR_1703 transcriptional regulator K07467 nicK; putative DNA relaxase
D SIR_1573 hypothetical protein K07467 nicK; putative DNA relaxase
D SIR_1620 recombination factor protein RarA K07478 ycaJ; putative ATPase
D SIR_0735 transposase K07483 K07483; transposase
D SIR_1324 putative transposase K07486 K07486; transposase
D SIR_1562 hypothetical protein K07493 K07493; putative transposase
D SIR_0736 transposase K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D SIR_0233 hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D SIR_1353 putative amino acid transporter K03293 TC.AAT; amino acid transporter, AAT family
D SIR_1185 putative amino acid permease transporter K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D SIR_0805 brnQ; putative branched-chain amino acid carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
C 99978 Cell growth
D SIR_1344 hypothetical protein K20073 mapZ; mid-cell-anchored protein Z
D SIR_1594 hypothetical protein K06330 cotH; spore coat protein H
D SIR_0160 putative RNA-binding protein K06346 jag; spoIIIJ-associated protein
D SIR_1304 site-specific recombinase K06400 spoIVCA; site-specific DNA recombinase
D SIR_1305 site-specific recombinase K06400 spoIVCA; site-specific DNA recombinase
D SIR_1306 site-specific recombinase K06400 spoIVCA; site-specific DNA recombinase
C 99993 Cell motility
C 99995 Signaling proteins
D SIR_1256 typA; GTP-binding protein K06207 typA; GTP-binding protein
D SIR_1533 hypothetical protein K07166 K07166; ACT domain-containing protein
D SIR_0699 phoL; PhoH-like protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
C 99992 Structural proteins
D SIR_1032 glycosyl hydrolase family 25 K07273 acm; lysozyme
C 99994 Others
D SIR_0560 phoU; phosphate transport system, regulatory protein PhoU K02039 phoU; phosphate transport system protein
D SIR_0749 cutC; copper homeostasis protein CutC K06201 cutC; copper homeostasis protein
D SIR_1570 hypothetical protein K26996 sdpI; immunity protein, SdpI family
D SIR_1203 hypothetical protein K26996 sdpI; immunity protein, SdpI family
B
B 09194 Poorly characterized
C 99996 General function prediction only
D SIR_1119 coiA; putative competence protein CoiA K06198 coiA; competence protein CoiA
D SIR_1638 tRNA-binding domain-containing protein K06878 K06878; tRNA-binding protein
D SIR_1869 HAD superfamily hydrolase K07025 K07025; putative hydrolase of the HAD superfamily
D SIR_0459 sufB; FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D SIR_1362 sufD; Fe-S cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D SIR_0732 putative ribonuclease BN K07058 K07058; membrane protein
D SIR_0343 hypothetical protein K03744 lemA; LemA protein
D SIR_0599 hypothetical protein K03095 sprL; SprT-like protein
D SIR_1430 dedA; putative membrane protein K03975 dedA; membrane-associated protein
D SIR_1866 hypothetical protein K01421 yhgE; putative membrane protein
D SIR_1052 hypothetical protein K08974 K08974; putative membrane protein
D SIR_0595 putative substrate-binding transport protein K08986 ycgQ; putative membrane protein
D SIR_0901 phnA; putative alkylphosphonate utilization operon protein PhnA K06193 phnA; protein PhnA
C 99997 Function unknown
D SIR_0649 putative transcriptional regulator K06871 K06871; uncharacterized protein
D SIR_1109 hypothetical protein K06885 K06885; uncharacterized protein
D SIR_0410 putative thioesterase K06889 K06889; uncharacterized protein
D SIR_0370 hypothetical protein K06890 K06890; uncharacterized protein
D SIR_1765 hypothetical protein K06929 K06929; uncharacterized protein
D SIR_0369 hypothetical protein K06950 K06950; uncharacterized protein
D SIR_0745 hypothetical protein K06960 K06960; uncharacterized protein
D SIR_1237 putative nuclease K07004 K07004; uncharacterized protein
D SIR_1057 putative lactoylglutathione lyase K07032 K07032; uncharacterized protein
D SIR_0739 putative membrane protein, putative toxin regulator K07035 K07035; uncharacterized protein
D SIR_0596 hypothetical protein K07089 K07089; uncharacterized protein
D SIR_1011 hypothetical protein K07090 K07090; uncharacterized protein
D SIR_0375 putative phosphoesterase K07095 K07095; uncharacterized protein
D SIR_0746 putative transcriptional regulator K07105 K07105; uncharacterized protein
D SIR_0529 putative oxidoreductase K07124 K07124; uncharacterized protein
D SIR_0389 radical SAM protein K07139 K07139; uncharacterized protein
D SIR_0381 hypothetical protein K08998 K08998; uncharacterized protein
D SIR_1282 hypothetical protein K09155 K09155; uncharacterized protein
D SIR_1532 hypothetical protein K09157 K09157; uncharacterized protein
D SIR_1070 hypothetical protein K09704 K09704; uncharacterized protein
D SIR_0773 hypothetical protein K09787 K09787; uncharacterized protein
D SIR_0927 hypothetical protein K09790 K09790; uncharacterized protein
D SIR_1159 hypothetical protein K00243 K00243; uncharacterized protein
D SIR_0844 hypothetical protein K09861 K09861; uncharacterized protein
D SIR_0079 hypothetical protein K09962 K09962; uncharacterized protein
D SIR_0096 hypothetical protein K09963 K09963; uncharacterized protein
D SIR_0372 hypothetical protein K09976 K09976; uncharacterized protein
D SIR_0912 hypothetical protein K07584 ysxB; uncharacterized protein
D SIR_1287 hypothetical protein K07586 ygaC; uncharacterized protein
D SIR_1408 hypothetical protein K07742 ylxR; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024