+F Chromosome and associated proteins KO #

  Chromosome and Associated Proteins - Ruegeria sp. TM1040

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AEukaryotic type B Sister chromatid cohesion proteins C Cohesin complex C Adherin complex C CTF18-RFC complex C Fork protection complex C Other sister chromatid cohesion factors B Meiosis-specific proteins C Cohesin complex and associated proteins C Synaptonemal complex C DSB formation-related proteins C Others B Nucleosome assembly factors C Histones C Histone chaperones D Nucleoplasmins D NAPs (Nucleosome assembly proteins) D CAF-1 D FACT complex D Other Histone chaperones and regulators C HMG (high mobility group) proteins B Histone modification proteins C HATs (histone acetyltransferases) C HAT complexes D PCAF complex D STAGA complex D TFTC complex D TIP60 complex D HBO1 complex D MOZ/MORF complex D SAGA complex D SLIK complex D ADA-HAT complex D HAT-A2 complex D ATAC complex D HATB complex D NSL complex D MSL complex D NuA3 complex D NuA4 complex D SAS complex C HDACs (histone deacetylases) D Class I HDACs D Class II HDACs D SIRTs (sirtuins, class III HDACs) D Class IV HDACs C HDAC complexes D Sin3A-HDAC complex D BRAF-HDAC complex D REST complex D SHIP complex D MiDAC complex D SMART complex D Other HDAC associated proteins C HMTs (histone methyltransferases) D HKMTs (histone lysine methyltransferases) D PRMTs (protein arginine metyltransferases) C HMT complexes D COMPASS/SET1 complex D COMPASS/SET1 complex (yeast) D MLL-HCF complex D MLL3/MLL4 complex D Dot1-containing complex C Histone demethylases C Polycomb repressive complex (PRC) and associated proteins D Canonical PRC1 (PRC1.2/1.4) E PRC1.4 specific proteins D Noncanonical PRC1 (PRC1.1) D Noncanonical PRC1 (PRC1.3/1.5) D Noncanonical PRC1 (PRC1.6) D PRC2.1 D PRC2.2 D PR-DUB complex D Other PRC associated proteins C Sir proteins C Other histone modification proteins B Chromosome condensation proteins C Condensin I C Condensin II C Other regulators of chromosome condensation B Centromeric chromatin formation proteins C Kinetochore proteins D Centromere proteins D CPC (chromosomal passenger complex) D KMN network proteins E MIS12 complex E NDC80 complex D Mis6 complex D COMA complex D NMS complex E NDC80 complex E MIND kinetochore complex D MIS16-MIS18 complex D DASH complex D CBF3 complex D Others C SAC (spindle assembly checkpoint) factors D Core SAC proteins D Motor proteins E RZZ complex E Dynein complex D Protein kinases D Others C Other centromeric chromatin formation proteins D Shugoshin D PP2A (protein phosphatase 2A) B Heterochromatin formation proteins C HP1 (heterochromatin protein 1) C MBPs (metylated DNA binding proteins) C Other heterochromatin formation proteins D TM1040_1691 prophage LambdaSo; type II DNA modification methyltransferase; putative K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] B Gene silencing C RISC (RNA-induced silencing complex) C piRNA pathway C RNA interference (RNAi) pathway D RITS (RNA-induced transcriptional silencing) complex D RDRC (RNA-directed RNA polymerase complex) D Other RNAi proteins C microRNA pathway D Microprocessor complex E TM1040_2559 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] D RISC loading complex D Other miRNA pathway proteins C Transposable elements B Centrosome formation proteins C Centriole proteins C Pericentriolar materials (PCM) D Centriolar satellite D Other PCM proteins C Cyclins C Kinases and associated factors D Kinase anchoring protein C Microtubules and associated factors D gamma-tubulin ring complex D Other tubulins D Dynactin complex D BRISC complex D Microtubule-associated proteins C Augmin complex C Centrosome duplication proteins D Centriole replication proteins D Regulators of centriole replication D Other centrosome duplication proteins C Nde1-Su48 complex C LINC complex C 3M complex C Other centriole associated proteins D TM1040_1976 fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] C Spindle formation proteins B Sister chromatid separation proteins C Securin and associated proteins C Separase C APC/C complex C Aurora kinases D Regulators of Aurora kinases C TACC proteins C Polo kinases C Early mitotic inhibitors B Chromatin remodeling factors C BAF complex C PBAF complex C GBAF(ncBAF) complex C CHRAC complex C RSF complex C WICH complex C B-WICH complex C NORC complex C BRF complex C NuRD complex C NuRF complex C NuRF complex (fruit fly) C CERF complex C SRCAP complex C INO80 complex C INO80 complex (yeast) C RSC complex C SWI/SNF complex C SWR1 complex C ASTRA complex C Other chromatin remodeling factors # AProkaryotic type B Nucleoid associated proteins C HNS (histone-like nucleoid structuring protein) D TM1040_3107 histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS C HU (heat unstable protein) D TM1040_2801 histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta C IHF (integration host factor) D TM1040_0913 integration host factor alpha subunit K04764 ihfA; integration host factor subunit alpha D TM1040_0202 integration host factor beta subunit K05788 ihfB; integration host factor subunit beta C Other nucleoid associated proteins D TM1040_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D TM1040_0063 Hemimethylated DNA-binding region K11940 hspQ; heat shock protein HspQ D TM1040_2721 Ferritin and Dps K04047 dps; starvation-inducible DNA-binding protein D TM1040_1356 RNA-binding protein Hfq K03666 hfq; host factor-I protein D TM1040_1891 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D TM1040_1694 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D TM1040_2780 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D TM1040_0910 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D TM1040_3163 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D TM1040_3629 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D TM1040_3679 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D TM1040_2738 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D TM1040_2708 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein B Chromosome partitioning proteins C MukBEF complex C Condensin-like complex D TM1040_2587 Chromosome segregation protein SMC K03529 smc; chromosome segregation protein D TM1040_0906 condensin subunit ScpA K05896 scpA; segregation and condensation protein A D TM1040_0907 condensin subunit ScpB K06024 scpB; segregation and condensation protein B D TM1040_3402 putative transcriptional regulator K06024 scpB; segregation and condensation protein B C Divisome proteins D TM1040_0688 cell division protein FtsA K03590 ftsA; cell division protein FtsA D TM1040_3498 ABC transporter-related protein K09812 ftsE; cell division transport system ATP-binding protein D TM1040_2017 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D TM1040_0060 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D TM1040_2016 hypothetical protein K03586 ftsL; cell division protein FtsL D TM1040_0687 cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ D TM1040_0681 Cell division protein FtsW K03588 ftsW; cell division protein FtsW D TM1040_3499 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein D TM1040_0689 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D TM1040_1115 hypothetical protein K09888 zapA; cell division protein ZapA D TM1040_2673 AFG1-like ATPase K06916 zapE; cell division protein ZapE D TM1040_0866 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D TM1040_3421 secretion protein HlyD K03585 acrA; membrane fusion protein, multidrug efflux system C Inhibitors of FtsZ assembly C Other chromosome partitioning proteins D TM1040_0473 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D TM1040_0472 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D TM1040_0471 putative rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D TM1040_0469 Rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D TM1040_2618 putative chromosome partitioning protein K03496 parA; chromosome partitioning protein D TM1040_2867 chromosome segregation ATPase K03496 parA; chromosome partitioning protein D TM1040_3773 repA; SopA protein (Plasmid partition protein A) K03496 parA; chromosome partitioning protein D TM1040_3406 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein D TM1040_3405 ParB-like nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TM1040_2868 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TM1040_1642 putative DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TM1040_3774 repB; Probable chromosome partitioning protein parB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TM1040_2432 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D TM1040_1740 DNA topoisomerase IV B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D TM1040_2865 gidA; Glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D TM1040_2866 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D TM1040_1391 gid protein K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D TM1040_2381 phage integrase K03733 xerC; integrase/recombinase XerC D TM1040_1428 phage integrase K04763 xerD; integrase/recombinase XerD D TM1040_0395 Mrp/NBP35 family protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D TM1040_2022 putative Mrp (multidrug resistance-associated proteins) family protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D TM1040_0305 GTP-binding K03978 engB; GTP-binding protein ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 16, 2024