+D GENES KO #

  KEGG Orthology (KO) - Shewanella loihica

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:slo00010] D Shew_1088 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Shew_0773 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Shew_0755 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Shew_2831 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Shew_2000 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Shew_2002 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Shew_0754 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Shew_3806 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Shew_1205 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Shew_2050 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Shew_1549 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Shew_3431 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Shew_3430 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Shew_3429 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shew_1540 Alcohol dehydrogenase, zinc-binding domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shew_1910 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Shew_1166 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Shew_3048 Alcohol dehydrogenase GroES domain protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D Shew_3574 Aldehyde dehydrogenase (NAD(+)) K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D Shew_1533 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Shew_3272 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Shew_1922 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Shew_2165 Aldose 1-epimerase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15] D Shew_3623 Phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D Shew_1864 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Shew_2641 PTS system, glucose-like IIB subunint K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] C 00020 Citrate cycle (TCA cycle) [PATH:slo00020] D Shew_1650 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D Shew_3424 aconitase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Shew_1563 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Shew_2760 Isocitrate dehydrogenase (NAD(+)) K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] D Shew_1655 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D Shew_1656 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Shew_3429 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shew_1658 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Shew_1657 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Shew_1653 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Shew_1654 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Shew_1651 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Shew_1652 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Shew_0334 succinate dehydrogenase subunit A K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D Shew_0335 succinate dehydrogenase subunit B K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D Shew_0332 fumarate reductase respiratory complex, transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C D Shew_0333 fumarate reductase respiratory complex, transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C D Shew_3112 flavocytochrome c K26318 fccA; fumarate reductase (cytochrome) [EC:1.3.2.4] D Shew_1904 fumarase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D Shew_0068 fumarase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D Shew_0867 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Shew_3623 Phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D Shew_3431 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Shew_3430 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:slo00030] D Shew_1088 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Shew_2048 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Shew_2047 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31] D Shew_2561 6-phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D Shew_0219 ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Shew_0752 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Shew_1089 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D Shew_0825 ribose-5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D Shew_1091 Phosphoketolase K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22] D Shew_2815 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D Shew_0696 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D Shew_2813 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D Shew_1922 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Shew_2916 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Shew_2046 6-phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12] D Shew_2045 2-keto-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Shew_2983 Tat (twin-arginine translocation) pathway signal sequence domain protein K06152 E1.1.99.3G; gluconate 2-dehydrogenase gamma chain [EC:1.1.99.3] D Shew_0755 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Shew_0773 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] C 00040 Pentose and glucuronate interconversions [PATH:slo00040] D Shew_1434 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Shew_1418 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Shew_0219 ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Shew_2364 aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] C 00051 Fructose and mannose metabolism [PATH:slo00051] D Shew_1428 N-acetylglucosamine kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Shew_2544 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8] D Shew_0773 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Shew_0755 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Shew_2831 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Shew_3425 HAD-superfamily hydrolase, subfamily IA, variant 3 K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68] C 00052 Galactose metabolism [PATH:slo00052] D Shew_3272 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Shew_2287 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D Shew_3271 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D Shew_2288 UDP-glucose-hexose-1-phosphate uridylyltransferase / UTP-hexose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D Shew_1433 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Shew_2285 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Shew_3111 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Shew_1434 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Shew_1418 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Shew_1922 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Shew_3269 Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D Shew_2298 putative alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D Shew_1876 alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D Shew_1889 alpha amylase, catalytic region K01187 malZ; alpha-glucosidase [EC:3.2.1.20] C 00053 Ascorbate and aldarate metabolism D Shew_2364 aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] C 00500 Starch and sucrose metabolism [PATH:slo00500] D Shew_2298 putative alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D Shew_1876 alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D Shew_1889 alpha amylase, catalytic region K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D Shew_1434 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Shew_1418 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Shew_1171 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D Shew_1172 Starch synthase K00703 glgA; starch synthase [EC:2.4.1.21] D Shew_1168 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D Shew_1170 glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D Shew_1873 glucan 1,4-alpha-glucosidase K01178 SGA1; glucoamylase [EC:3.2.1.3] D Shew_1167 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D Shew_1864 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Shew_1169 glycogen debranching enzyme GlgX K01214 ISA; isoamylase [EC:3.2.1.68] D Shew_1922 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Shew_1088 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Shew_1428 N-acetylglucosamine kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:slo00520] D Shew_1626 glycoside hydrolase, family 3 domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D Shew_1115 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D Shew_1864 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Shew_1117 N-acetylglucosamine 6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D Shew_0815 glucosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D Shew_1116 ATPase, BadF/BadG/BcrA/BcrD type K18676 gspK; glucosamine kinase [EC:2.7.1.8] D Shew_1428 N-acetylglucosamine kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Shew_3839 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Shew_2832 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D Shew_3842 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D Shew_1020 protein of unknown function UPF0075 K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D Shew_1947 HAD-superfamily hydrolase, subfamily IA, variant 1 K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105] D Shew_0883 aminoglycoside phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221] D Shew_0884 Nucleotidyl transferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99] D Shew_3298 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Shew_0141 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Shew_1318 polysaccharide biosynthesis protein CapD K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-] D Shew_2641 PTS system, glucose-like IIB subunint K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D Shew_1922 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Shew_1434 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Shew_1418 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Shew_2287 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D Shew_3271 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D Shew_2288 UDP-glucose-hexose-1-phosphate uridylyltransferase / UTP-hexose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D Shew_1433 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Shew_2285 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Shew_3111 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Shew_1088 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Shew_2544 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8] D Shew_1171 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] C 00620 Pyruvate metabolism [PATH:slo00620] D Shew_1533 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Shew_3431 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Shew_3430 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Shew_3429 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shew_2390 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D Shew_1910 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Shew_1166 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Shew_1540 Alcohol dehydrogenase, zinc-binding domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shew_3048 Alcohol dehydrogenase GroES domain protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D Shew_2393 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Shew_2394 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D Shew_2050 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Shew_3364 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Shew_3365 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D Shew_1628 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D Shew_3574 Aldehyde dehydrogenase (NAD(+)) K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D Shew_0787 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D Shew_3136 FAD linked oxidase domain protein K18930 dld; D-lactate dehydrogenase D Shew_2073 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D Shew_2114 Hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D Shew_2269 beta-lactamase domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D Shew_2962 Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D Shew_0383 Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D Shew_1220 oxaloacetate decarboxylase alpha subunit K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D Shew_1221 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Shew_1219 sodium pump decarboxylases, gamma subunit K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma D Shew_0867 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Shew_1904 fumarase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D Shew_0068 fumarase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D Shew_0334 succinate dehydrogenase subunit A K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D Shew_0335 succinate dehydrogenase subunit B K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D Shew_0332 fumarate reductase respiratory complex, transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C D Shew_0333 fumarate reductase respiratory complex, transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C D Shew_3112 flavocytochrome c K26318 fccA; fumarate reductase (cytochrome) [EC:1.3.2.4] D Shew_0200 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D Shew_3623 Phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D Shew_1549 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Shew_1275 malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D Shew_1667 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shew_2858 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shew_3472 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:slo00630] D Shew_1276 isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1] D Shew_1533 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Shew_1275 malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D Shew_0867 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Shew_1650 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D Shew_3424 aconitase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Shew_1667 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shew_2858 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shew_3190 Catalase K03781 katE; catalase [EC:1.11.1.6] D Shew_0887 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D Shew_0220 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Shew_1595 HAD-superfamily hydrolase, subfamily IA, variant 1 K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Shew_0294 alanine-glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Shew_0972 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shew_3554 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shew_1185 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Shew_3062 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D Shew_3064 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Shew_3429 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shew_3063 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Shew_1609 6-phosphogluconate dehydrogenase, NAD-binding K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] D Shew_2534 Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D Shew_2045 2-keto-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Shew_0059 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Shew_0063 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Shew_0809 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Shew_0064 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Shew_0060 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Shew_0065 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Shew_0061 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Shew_0239 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Shew_2640 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] C 00640 Propanoate metabolism [PATH:slo00640] D Shew_1533 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Shew_2568 AMP-dependent synthetase and ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D Shew_2393 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Shew_2394 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D Shew_1925 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D Shew_1926 Transketolase, central region K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D Shew_0901 branched-chain alpha-keto acid dehydrogenase E1 component K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D Shew_1927 catalytic domain of components of various dehydrogenase complexes K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D Shew_3429 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shew_2390 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D Shew_3572 Alcohol dehydrogenase GroES domain protein K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-] D Shew_0019 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shew_2425 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Shew_3364 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Shew_3365 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D Shew_3172 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Shew_0966 aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D Shew_1657 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Shew_1658 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Shew_0965 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Shew_1668 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Shew_1821 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D Shew_1822 aconitase K20455 acnD; 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) [EC:4.2.1.117] D Shew_1823 methylitaconate delta2-delta3-isomerase K09788 prpF; 2-methylaconitate isomerase [EC:5.3.3.-] D Shew_3424 aconitase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Shew_1820 2,3-dimethylmalate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30] D Shew_0070 iron-containing alcohol dehydrogenase K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-] C 00650 Butanoate metabolism [PATH:slo00650] D Shew_1667 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shew_2858 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shew_2864 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D Shew_0019 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shew_2425 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Shew_2503 short-chain alcohol dehydrogenase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D Shew_1910 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Shew_1221 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Shew_1653 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Shew_1654 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Shew_1651 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Shew_1652 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Shew_0334 succinate dehydrogenase subunit A K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D Shew_0335 succinate dehydrogenase subunit B K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D Shew_0332 fumarate reductase respiratory complex, transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C D Shew_0333 fumarate reductase respiratory complex, transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C D Shew_3112 flavocytochrome c K26318 fccA; fumarate reductase (cytochrome) [EC:1.3.2.4] D Shew_3172 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Shew_3173 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Shew_2390 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D Shew_2574 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Shew_2575 3-oxoacid CoA-transferase, A subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D Shew_2576 butyryl-CoA:acetate CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D Shew_1776 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shew_0289 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shew_1775 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Shew_0290 acetolactate synthase, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:slo00660] D Shew_1776 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shew_0289 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shew_1775 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Shew_0290 acetolactate synthase, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D Shew_1657 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Shew_1658 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Shew_3470 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Shew_3469 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Shew_3471 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:slo00562] D Shew_2321 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Shew_0965 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Shew_1668 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Shew_2831 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:slo00190] D Shew_2195 NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D Shew_1161 NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D Shew_1653 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Shew_1654 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Shew_1651 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Shew_1652 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Shew_0334 succinate dehydrogenase subunit A K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D Shew_0335 succinate dehydrogenase subunit B K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D Shew_0332 fumarate reductase respiratory complex, transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C D Shew_0333 fumarate reductase respiratory complex, transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C D Shew_0570 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D Shew_0571 Cytochrome b/b6, N-terminal domain K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D Shew_0572 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D Shew_0117 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Shew_0370 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Shew_0369 cytochrome C oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV D Shew_0122 cytochrome c oxidase, subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D Shew_0124 Cytochrome-c oxidase K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D Shew_0125 cytochrome c oxidase, subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D Shew_0123 cytochrome c oxidase assembly protein CtaG/Cox11 K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D Shew_0118 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D Shew_1985 cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D Shew_1986 cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D Shew_1987 Cbb3-type cytochrome oxidase component K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D Shew_1988 cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D Shew_0368 cytochrome c oxidase, subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III D Shew_0367 Cytochrome-c oxidase K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3] D Shew_0366 ubiquinol oxidase, subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3] D Shew_1302 cytochrome bd ubiquinol oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D Shew_1303 cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D Shew_1304 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D Shew_3847 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Shew_3845 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Shew_3846 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Shew_3848 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D Shew_3844 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Shew_3851 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Shew_3849 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Shew_3850 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Shew_1975 Inorganic diphosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1] D Shew_3079 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:slo00680] D Shew_1540 Alcohol dehydrogenase, zinc-binding domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shew_1541 Carboxylesterase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12] D Shew_0059 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Shew_0063 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Shew_0809 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Shew_0064 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Shew_0060 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Shew_0065 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Shew_0061 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Shew_0239 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Shew_1185 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Shew_0294 alanine-glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Shew_0887 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D Shew_1205 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Shew_0200 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D Shew_0867 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Shew_0755 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Shew_0773 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Shew_2798 trimethylamine-N-oxide reductase TorA K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3] D Shew_2797 trimethylamine-N-oxide reductase c-type cytochrome TorC K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC D Shew_2799 cytoplasmic chaperone TorD family protein K03533 torD; TorA specific chaperone D Shew_2984 ferredoxin-dependent glutamate synthase K22083 mgsC; methylamine---glutamate N-methyltransferase subunit C [EC:2.1.1.21] D Shew_2393 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Shew_2394 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D Shew_1533 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Shew_1549 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Shew_3806 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Shew_3196 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Shew_1950 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Shew_2810 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 00910 Nitrogen metabolism [PATH:slo00910] D Shew_3206 periplasmic nitrate reductase subunit NapA apoprotein K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1] D Shew_1770 periplasmic nitrate reductase subunit NapA apoprotein K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1] D Shew_3209 periplasmic nitrate reductase subunit NapB K02568 napB; nitrate reductase (cytochrome), electron transfer subunit D Shew_1771 periplasmic nitrate reductase subunit NapB K02568 napB; nitrate reductase (cytochrome), electron transfer subunit D Shew_0844 respiratory nitrite reductase (cytochrome; ammonia-forming) precursor K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2] D Shew_0505 Nitrite reductase (cytochrome; ammonia-forming) K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2] D Shew_3335 nitrite reductase, copper-containing K00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1] D Shew_0657 putative nitric oxide reductase (subunit B) transmembrane protein K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5] D Shew_3400 Nitrous-oxide reductase K00376 nosZ; nitrous-oxide reductase [EC:1.7.2.4] D Shew_1069 hybrid cluster protein K05601 hcp; hydroxylamine reductase [EC:1.7.99.1] D Shew_1878 2-nitropropane dioxygenase, NPD K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D Shew_1809 glutamate dehydrogenase (NAD) K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D Shew_0972 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shew_3554 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shew_1032 glutamate synthase (NADPH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Shew_1031 glutamate synthase (NADPH) small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Shew_1859 Carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:slo00920] D Shew_1423 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D Shew_1422 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D Shew_1425 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D Shew_1427 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D Shew_0130 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D Shew_0667 phosphoadenylylsulfate reductase (thioredoxin) K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D Shew_0665 sulfite reductase (NADPH) alpha subunit K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D Shew_0666 sulfite reductase (NADPH) beta subunit K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] D Shew_3243 molydopterin dinucleotide-binding region K08357 ttrA; tetrathionate reductase subunit A D Shew_3244 4Fe-4S ferredoxin, iron-sulfur binding domain protein K08358 ttrB; tetrathionate reductase subunit B D Shew_0608 molybdopterin oxidoreductase K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5] D Shew_0968 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D Shew_3711 Rhodanese domain protein K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1] D Shew_2319 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Shew_2060 Pyridoxal-5'-phosphate-dependent enzyme, beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47] D Shew_2382 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D Shew_2551 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D Shew_0520 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D Shew_2164 acyl-CoA dehydrogenase domain protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] D Shew_1961 acyl-CoA dehydrogenase domain protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:slo00061] D Shew_3364 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Shew_3365 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D Shew_1604 acyl carrier protein K02078 acpP; acyl carrier protein D Shew_3512 phosphopantetheine-binding K02078 acpP; acyl carrier protein D Shew_3511 acyl carrier protein, putative K02078 acpP; acyl carrier protein D Shew_1327 conserved hypothetical protein K02078 acpP; acyl carrier protein D Shew_1602 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Shew_1601 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Shew_1333 3-oxoacyl-(acyl-carrier-protein) synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Shew_1334 3-oxoacyl-(acyl-carrier-protein) synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Shew_2366 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Shew_3523 beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Shew_2410 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Shew_3526 beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Shew_1605 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Shew_1603 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shew_1322 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shew_1673 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shew_3525 3-oxoacyl-(acyl-carrier-protein) reductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shew_1817 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D Shew_2624 3-hydroxyacyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Shew_2503 short-chain alcohol dehydrogenase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D Shew_3084 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_2610 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_3776 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_2188 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_2866 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_3502 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:slo00071] D Shew_1667 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shew_2858 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shew_0018 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Shew_2426 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Shew_0019 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shew_2425 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Shew_2864 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D Shew_2860 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D Shew_2108 acyl-CoA dehydrogenase domain protein K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-] D Shew_2051 acyl-CoA dehydrogenase domain protein K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-] D Shew_3003 acyl-CoA dehydrogenase domain protein K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-] D Shew_0900 acyl-CoA dehydrogenase domain protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D Shew_3084 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_2610 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_3776 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_2188 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_2866 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_3502 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_1540 Alcohol dehydrogenase, zinc-binding domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shew_1910 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Shew_1166 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:slo00561] D Shew_2534 Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D Shew_3048 Alcohol dehydrogenase GroES domain protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D Shew_3466 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D Shew_3530 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D Shew_1600 phosphate:acyl-[acyl carrier protein] acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Shew_1001 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Shew_0450 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Shew_1586 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D Shew_3323 lipase-like K01046 lip; triacylglycerol lipase [EC:3.1.1.3] C 00564 Glycerophospholipid metabolism [PATH:slo00564] D Shew_3803 Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D Shew_0800 FAD dependent oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D Shew_3530 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D Shew_1001 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Shew_0450 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Shew_3695 Glycerol-3-phosphate cytidylyltransferase K00980 tagD; glycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39] D Shew_1586 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D Shew_0671 Phospholipase A(1) K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D Shew_3723 alpha/beta hydrolase fold K01048 pldB; lysophospholipase [EC:3.1.1.5] D Shew_3017 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D Shew_0554 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D Shew_2630 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D Shew_1965 phospholipase D/Transphosphatidylase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Shew_2945 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Shew_0557 phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D Shew_1826 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D Shew_1193 phosphatidylglycerophosphatase K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] D Shew_0302 phosphatidylglycerophosphatase K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27] D Shew_1932 cardiolipin synthetase 2 K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D Shew_1456 phospholipase D/Transphosphatidylase K06132 clsC; cardiolipin synthase C [EC:2.7.8.-] D Shew_0985 phospholipase D/Transphosphatidylase K06132 clsC; cardiolipin synthase C [EC:2.7.8.-] C 00565 Ether lipid metabolism [PATH:slo00565] D Shew_0671 Phospholipase A(1) K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00600 Sphingolipid metabolism [PATH:slo00600] D Shew_3269 Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D Shew_1115 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] C 00590 Arachidonic acid metabolism [PATH:slo00590] D Shew_0671 Phospholipase A(1) K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D Shew_2742 peptidase M1, membrane alanine aminopeptidase K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6] C 00591 Linoleic acid metabolism D Shew_0671 Phospholipase A(1) K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00592 alpha-Linolenic acid metabolism [PATH:slo00592] D Shew_0671 Phospholipase A(1) K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D Shew_0018 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Shew_2426 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids [PATH:slo01040] D Shew_0136 Delta-9 acyl-phospholipid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D Shew_2403 Arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D Shew_2989 lipolytic enzyme, G-D-S-L family K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D Shew_2556 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:slo00230] D Shew_0545 ADP-ribose diphosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D Shew_0129 NUDIX hydrolase K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-] D Shew_2813 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D Shew_1922 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Shew_2916 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Shew_2302 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Shew_3413 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D Shew_1512 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Shew_1301 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D Shew_1513 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D Shew_1249 phosphoribosylaminoimidazole carboxylase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D Shew_1230 phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D Shew_1248 phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D Shew_2211 Phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D Shew_1558 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Shew_3412 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Shew_2236 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Shew_1285 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D Shew_2135 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D Shew_1210 5'-nucleotidase / 3'-nucleotidase / exopolyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Shew_1511 HAD-superfamily hydrolase, subfamily IIA K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D Shew_0128 HAD-superfamily hydrolase, subfamily IA, variant 3 K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-] D Shew_2228 inosine-guanosine kinase K00892 gsk; inosine kinase [EC:2.7.1.73] D Shew_2812 purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D Shew_2949 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Shew_3142 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D Shew_1297 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Shew_2310 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Shew_0738 protein of unknown function DUF84 K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73] D Shew_1132 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D Shew_1298 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Shew_3497 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D Shew_1946 ribonucleoside-diphosphate reductase class Ia alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Shew_1945 ribonucleoside-diphosphate reductase class Ia beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D Shew_2449 ribonucleoside-triphosphate reductase class III catalytic subunit / ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Shew_1912 putative deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1] D Shew_1913 metal dependent phosphohydrolase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89] D Shew_3499 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Shew_0340 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D Shew_3078 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D Shew_1202 (p)ppGpp synthetase I, SpoT/RelA K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5] D Shew_1036 putative adenylate/guanylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D Shew_0319 adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1] D Shew_1517 putative adenylyl cyclase CyaB K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1] D Shew_3291 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Shew_3721 adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4] D Shew_2755 conserved hypothetical protein 730 K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D Shew_2162 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D Shew_2230 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Shew_1203 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Shew_0547 Calcineurin phosphoesterase C-terminal domain protein K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] D Shew_0877 Bis(5'nucleosyl)-tetraphosphatase, ApaH K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41] D Shew_1425 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D Shew_1423 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D Shew_1422 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] C 00240 Pyrimidine metabolism [PATH:slo00240] D Shew_2838 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Shew_2839 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Shew_1013 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Shew_0728 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D Shew_1810 dihydroorotate oxidase A K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D Shew_3487 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D Shew_1958 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D Shew_2633 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D Shew_2310 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Shew_1203 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Shew_0406 maf protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D Shew_2454 protein of unknown function DUF45 K07043 upp; UTP pyrophosphatase [EC:3.6.1.-] D Shew_1204 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D Shew_1953 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D Shew_1575 uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D Shew_1285 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D Shew_2135 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D Shew_1210 5'-nucleotidase / 3'-nucleotidase / exopolyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Shew_1511 HAD-superfamily hydrolase, subfamily IIA K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D Shew_0363 HAD-superfamily hydrolase, subfamily IA, variant 1 K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-] D Shew_3390 uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3] D Shew_1514 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D Shew_2162 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D Shew_2725 PfkB domain protein K16328 psuK; pseudouridine kinase [EC:2.7.1.83] D Shew_2724 Indigoidine synthase A family protein K16329 psuG; pseudouridylate synthase [EC:4.2.1.70] D Shew_0697 Purine nucleosidase K01250 rihA; pyrimidine-specific ribonucleoside hydrolase [EC:3.2.2.-] D Shew_2755 conserved hypothetical protein 730 K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D Shew_1610 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D Shew_2449 ribonucleoside-triphosphate reductase class III catalytic subunit / ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Shew_1576 dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D Shew_1946 ribonucleoside-diphosphate reductase class Ia alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Shew_1945 ribonucleoside-diphosphate reductase class Ia beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D Shew_1913 metal dependent phosphohydrolase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89] D Shew_3055 CMP/dCMP deaminase, zinc-binding K01493 comEB; dCMP deaminase [EC:3.5.4.12] D Shew_1579 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D Shew_3483 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Shew_2814 thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4] D Shew_2579 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D Shew_1041 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:slo00250] D Shew_1951 aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Shew_1047 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D Shew_1940 L-asparaginases, type I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D Shew_2171 peptidase T2, asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D Shew_3038 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Shew_1509 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Shew_1914 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D Shew_0294 alanine-glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Shew_2026 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D Shew_2027 alanine dehydrogenase/PNT domain protein K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D Shew_0205 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Shew_0206 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Shew_3291 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Shew_1558 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Shew_1013 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Shew_3172 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Shew_3173 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Shew_1032 glutamate synthase (NADPH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Shew_1031 glutamate synthase (NADPH) small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Shew_1809 glutamate dehydrogenase (NAD) K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D Shew_0615 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Shew_0972 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shew_3554 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shew_2838 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Shew_2839 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Shew_1126 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Shew_3839 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Shew_2302 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:slo00260] D Shew_0779 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Shew_1079 homoserine dehydrogenase / aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D Shew_0521 aspartate kinase / homoserine dehydrogenase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D Shew_2308 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Shew_1080 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D Shew_1081 L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D Shew_1155 L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D Shew_1185 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Shew_0294 alanine-glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Shew_0887 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D Shew_2534 Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D Shew_3806 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Shew_3196 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Shew_1950 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Shew_2810 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D Shew_3709 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D Shew_3710 L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103] D Shew_3062 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D Shew_3064 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Shew_3429 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shew_3063 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Shew_1965 phospholipase D/Transphosphatidylase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Shew_2945 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Shew_0740 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Shew_1625 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Shew_0293 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Shew_2256 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Shew_2255 tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:slo00270] D Shew_2319 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Shew_2060 Pyridoxal-5'-phosphate-dependent enzyme, beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47] D Shew_2382 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D Shew_1789 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Shew_0710 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Shew_2986 methionine synthase (B12-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D Shew_0751 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Shew_3344 dTDP-4-dehydrorhamnose reductase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Shew_1620 Adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Shew_0625 spermine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D Shew_1027 methylthioadenosine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D Shew_2949 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Shew_3771 2,3-diketo-5-methylthio-1-phosphopentane phosphatase K09880 mtnC; enolase-phosphatase E1 [EC:3.1.3.77] D Shew_1999 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Shew_2491 Methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D Shew_1800 putative GAF sensor protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D Shew_2882 quorum-sensing autoinducer 2 (AI-2), LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D Shew_2147 conserved hypothetical protein K01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7] D Shew_0779 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Shew_1079 homoserine dehydrogenase / aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D Shew_0521 aspartate kinase / homoserine dehydrogenase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D Shew_2308 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Shew_2551 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D Shew_0520 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D Shew_2710 O-acetylhomoserine/O-acetylserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D Shew_0278 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Shew_0291 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Shew_1227 glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D Shew_3225 glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D Shew_2899 glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D Shew_1951 aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Shew_0968 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D Shew_0867 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Shew_0740 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Shew_1625 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Shew_3196 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Shew_1950 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:slo00280] D Shew_0278 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Shew_0291 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Shew_1555 leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D Shew_1925 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D Shew_1926 Transketolase, central region K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D Shew_0901 branched-chain alpha-keto acid dehydrogenase E1 component K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D Shew_1927 catalytic domain of components of various dehydrogenase complexes K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D Shew_3429 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shew_2860 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D Shew_2570 isovaleryl-CoA dehydrogenase K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4] D Shew_0019 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shew_2425 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Shew_0018 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Shew_2426 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Shew_1672 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D Shew_0965 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Shew_1668 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Shew_0966 aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D Shew_3172 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Shew_2573 3-methylcrotonoyl-CoA carboxylase, alpha subunit K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4] D Shew_2571 Propionyl-CoA carboxylase K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] D Shew_2572 methylglutaconyl-CoA hydratase K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18] D Shew_2574 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Shew_2575 3-oxoacid CoA-transferase, A subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D Shew_2576 butyryl-CoA:acetate CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D Shew_1667 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shew_2858 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:slo00290] D Shew_0293 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Shew_3470 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Shew_3469 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Shew_3471 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D Shew_1776 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shew_0289 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shew_1775 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Shew_0290 acetolactate synthase, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D Shew_0288 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Shew_0292 dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Shew_0278 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Shew_0291 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Shew_1555 leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D Shew_1914 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D Shew_3472 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:slo00300] D Shew_0779 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Shew_1079 homoserine dehydrogenase / aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D Shew_0521 aspartate kinase / homoserine dehydrogenase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D Shew_2308 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Shew_1848 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Shew_2840 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D Shew_2638 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D Shew_0578 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Shew_1862 succinyldiaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Shew_2793 succinyldiaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Shew_0323 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Shew_0322 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Shew_3458 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Shew_3457 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:slo00310] D Shew_1656 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Shew_3429 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shew_0900 acyl-CoA dehydrogenase domain protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D Shew_0019 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shew_2425 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Shew_1667 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shew_2858 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shew_3172 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Shew_3173 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00220 Arginine biosynthesis [PATH:slo00220] D Shew_0204 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D Shew_0205 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Shew_0206 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Shew_1126 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Shew_0972 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shew_3554 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shew_1809 glutamate dehydrogenase (NAD) K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D Shew_1951 aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Shew_1914 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D Shew_3478 N-acetylglutamate synthase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1] D Shew_0203 N-acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D Shew_0202 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D Shew_0578 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Shew_0201 acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] C 00330 Arginine and proline metabolism [PATH:slo00330] D Shew_1619 arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D Shew_1621 agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D Shew_3392 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D Shew_0625 spermine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D Shew_1620 Adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Shew_0579 arginine succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109] D Shew_2225 succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23] D Shew_0580 succinylglutamic semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71] D Shew_1924 succinylglutamate desuccinylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96] D Shew_0977 FAD dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D Shew_0969 FAD dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D Shew_1537 FAD dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D Shew_0967 aldehyde dehydrogenase (acceptor) K09472 puuC; 4-(gamma-glutamylamino)butanal dehydrogenase [EC:1.2.1.99] D Shew_1136 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D Shew_3016 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D Shew_0615 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Shew_2848 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Shew_3014 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Shew_3015 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D Shew_2847 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D Shew_3544 alpha/beta hydrolase fold K01259 pip; proline iminopeptidase [EC:3.4.11.5] D Shew_1951 aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Shew_2361 proline racemase K01777 prdF; proline racemase [EC:5.1.1.4] D Shew_2955 ornithine cyclodeaminase K19742 lhpI; 1-pyrroline-2-carboxylate reductase [NAD(P)H] [EC:1.5.1.49] C 00340 Histidine metabolism [PATH:slo00340] D Shew_2197 ATP phosphoribosyltransferase (homohexameric) K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D Shew_2204 phosphoribosyl-ATP pyrophosphatase / phosphoribosyl-AMP cyclohydrolase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31] D Shew_2202 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D Shew_2201 imidazole glycerol phosphate synthase subunit hisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D Shew_2203 imidazole glycerol phosphate synthase subunit hisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D Shew_2200 histidinol-phosphate phosphatase / imidazoleglycerol-phosphate dehydratase K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15] D Shew_2199 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Shew_2198 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D Shew_2280 phenylalanine/histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D Shew_3517 histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D Shew_3756 histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D Shew_3757 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D Shew_3759 imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D Shew_3372 Arginase/agmatinase/formiminoglutamase K01479 hutG; formiminoglutamase [EC:3.5.3.8] C 00350 Tyrosine metabolism [PATH:slo00350] D Shew_1951 aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Shew_2199 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Shew_1999 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Shew_2155 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D Shew_2154 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D Shew_1439 maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D Shew_1438 fumarylacetoacetate (FAA) hydrolase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2] D Shew_1540 Alcohol dehydrogenase, zinc-binding domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shew_1910 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Shew_1166 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Shew_1507 5-carboxymethyl-2-hydroxymuconate isomerase K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10] D Shew_3173 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00360 Phenylalanine metabolism [PATH:slo00360] D Shew_1435 Phenylalanine 4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D Shew_1951 aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Shew_2199 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Shew_1999 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Shew_0903 GCN5-related N-acetyltransferase K03825 aaaT; L-phenylalanine/L-methionine N-acetyltransferase [EC:2.3.1.53 2.3.1.-] D Shew_2155 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D Shew_0709 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] C 00380 Tryptophan metabolism [PATH:slo00380] D Shew_3556 aminotransferase, class V K01556 KYNU; kynureninase [EC:3.7.1.3] D Shew_1656 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Shew_3429 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shew_0900 acyl-CoA dehydrogenase domain protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D Shew_0019 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shew_2425 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Shew_1667 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shew_2858 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shew_3190 Catalase K03781 katE; catalase [EC:1.11.1.6] D Shew_0709 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:slo00400] D Shew_0851 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Shew_1067 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Shew_1547 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Shew_0214 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D Shew_3363 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D Shew_3727 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D Shew_0213 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D Shew_1952 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D Shew_2416 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D Shew_2251 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Shew_2252 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Shew_2253 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D Shew_2254 phosphoribosylanthranilate isomerase / indole-3-glycerol phosphate synthase K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24] D Shew_2256 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Shew_2255 tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D Shew_1068 prephenate dehydrogenase / chorismate mutase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12] D Shew_1072 prephenate dehydratase / chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] D Shew_1951 aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Shew_2199 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Shew_1999 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Shew_1435 Phenylalanine 4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:slo00410] D Shew_3172 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Shew_3134 pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D Shew_0966 aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D Shew_0019 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shew_2425 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Shew_0965 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Shew_1668 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] C 00430 Taurine and hypotaurine metabolism [PATH:slo00430] D Shew_2158 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Shew_2026 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D Shew_2027 alanine dehydrogenase/PNT domain protein K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D Shew_1809 glutamate dehydrogenase (NAD) K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D Shew_2394 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D Shew_2393 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:slo00450] D Shew_0520 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D Shew_1789 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Shew_0710 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Shew_2986 methionine synthase (B12-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D Shew_2491 Methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D Shew_0735 cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D Shew_2028 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Shew_1423 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D Shew_1422 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D Shew_0135 selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D Shew_1573 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:slo00460] D Shew_2158 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Shew_1940 L-asparaginases, type I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D Shew_2171 peptidase T2, asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D Shew_1185 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:slo00470] D Shew_3277 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Shew_2133 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Shew_1126 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Shew_0139 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Shew_3455 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Shew_0323 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Shew_0322 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Shew_2361 proline racemase K01777 prdF; proline racemase [EC:5.1.1.4] D Shew_2363 proline racemase K12658 lhpA; 4-hydroxyproline epimerase [EC:5.1.1.8] D Shew_2360 D-amino-acid dehydrogenase K21060 lhpB; D-hydroxyproline dehydrogenase [EC:1.5.99.-] D Shew_2362 dihydrodipicolinate synthase K21062 lhpC; 1-pyrroline-4-hydroxy-2-carboxylate deaminase [EC:3.5.4.22] D Shew_2364 aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] C 00480 Glutathione metabolism [PATH:slo00480] D Shew_2158 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Shew_0006 LamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D Shew_0008 Allophanate hydrolase subunit 1 K23123 pxpB; 5-oxoprolinase (ATP-hydrolysing) subunit B [EC:3.5.2.9] D Shew_0007 urea amidolyase related protein K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9] D Shew_1227 glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D Shew_3225 glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D Shew_2899 glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D Shew_0939 PepA aminopeptidase. Metallo peptidase. MEROPS family M17 K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Shew_1677 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Shew_2851 peptidase M17, leucyl aminopeptidase domain protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Shew_3127 PepB aminopeptidase K07751 pepB; PepB aminopeptidase [EC:3.4.11.23] D Shew_0835 peptidase M1, membrane alanine aminopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2] D Shew_1803 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D Shew_2160 dipeptidase, putative K01270 pepD; dipeptidase D [EC:3.4.13.-] D Shew_2852 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D Shew_2968 Glutathione S-transferase, N-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Shew_3211 Glutathione S-transferase, C-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Shew_0859 Glutathione S-transferase, N-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Shew_0027 Glutathione S-transferase, N-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Shew_1780 Glutathione S-transferase, N-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Shew_3660 NADPH-glutathione reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7] D Shew_1563 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Shew_2561 6-phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D Shew_2048 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Shew_2741 Glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D Shew_3641 Redoxin domain protein K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27] D Shew_3392 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D Shew_0625 spermine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:slo00511] D Shew_3269 Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D Shew_1115 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] C 00540 Lipopolysaccharide biosynthesis [PATH:slo00540] D Shew_2623 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D Shew_3448 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D Shew_2625 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D Shew_2513 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D Shew_2622 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D Shew_1639 lipid-A-disaccharide synthase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D Shew_3306 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D Shew_2904 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D Shew_3307 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D Shew_1856 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Shew_3707 Three-deoxy-D-manno-octulosonic-acid transferase domain protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Shew_0658 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Shew_2213 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243] D Shew_2041 protein of unknown function DUF1705 K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D Shew_3020 hypothetical protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-] D Shew_3706 lipopolysaccharide kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166] D Shew_0659 D-beta-D-heptose 1-phosphate adenylyltransferase / D-alpha,beta-D-heptose 7-phosphate 1-kinase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D Shew_2357 D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D Shew_3694 ADP-glyceromanno-heptose 6-epimerase precursor K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] C 00542 O-Antigen repeat unit biosynthesis [PATH:slo00542] D Shew_1416 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Shew_1417 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:slo00541] D Shew_1434 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Shew_1418 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Shew_1433 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Shew_2285 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Shew_3111 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Shew_1402 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Shew_1401 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Shew_3704 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Shew_1404 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Shew_3703 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Shew_1403 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Shew_3705 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Shew_2544 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8] D Shew_3842 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D Shew_1318 polysaccharide biosynthesis protein CapD K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-] C 00550 Peptidoglycan biosynthesis [PATH:slo00550] D Shew_3298 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Shew_0141 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Shew_3452 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Shew_3455 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Shew_3458 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Shew_2133 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Shew_3457 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Shew_2631 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Shew_1004 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Shew_3368 phosphoesterase, PA-phosphatase related K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D Shew_3456 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Shew_3453 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Shew_0207 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Shew_3123 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D Shew_2935 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Shew_3459 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Shew_2939 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Shew_1962 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] C 00552 Teichoic acid biosynthesis [PATH:slo00552] D Shew_1004 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Shew_3368 phosphoesterase, PA-phosphatase related K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D Shew_1416 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Shew_1417 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Shew_3696 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase K21285 tagB; teichoic acid glycerol-phosphate primase [EC:2.7.8.44] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:slo00543] D Shew_1416 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Shew_1417 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Shew_2319 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:slo00730] D Shew_2096 thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D Shew_2095 phosphomethylpyrimidine kinase K14153 thiDE; hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase [EC:2.7.1.49 2.7.4.7 2.5.1.3] D Shew_2094 UBA/THIF-type NAD/FAD binding protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] D Shew_2317 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Shew_3354 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Shew_2766 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D Shew_2091 thiazole biosynthesis protein ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19] D Shew_2771 1-Deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Shew_2092 thiazole biosynthesis family protein K03149 thiG; thiazole synthase [EC:2.8.1.10] D Shew_1192 thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D Shew_0558 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Shew_1157 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shew_1158 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shew_3226 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shew_2230 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:slo00740] D Shew_2446 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D Shew_1189 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Shew_1187 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Shew_1306 CMP/dCMP deaminase, zinc-binding K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Shew_0326 HAD-superfamily hydrolase, subfamily IA, variant 1 K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104] D Shew_0040 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] D Shew_1190 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D Shew_1188 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D Shew_2036 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D Shew_1098 riboflavin kinase / FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D Shew_0359 oxidoreductase FAD/NAD(P)-binding domain protein K05368 fre; NAD(P)H-flavin reductase [EC:1.5.1.41] D Shew_0545 ADP-ribose diphosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D Shew_1561 NUDIX hydrolase K12152 nudJ; phosphatase NudJ [EC:3.6.1.-] D Shew_3143 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:slo00750] D Shew_1622 Pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D Shew_0753 D-erythrose-4-phosphate dehydrogenase K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72] D Shew_2309 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290] D Shew_1950 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Shew_0880 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D Shew_1057 pyridoxal phosphate biosynthetic protein PdxJ K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D Shew_1081 L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:slo00760] D Shew_1047 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D Shew_1928 quinolinate synthetase A K03517 nadA; quinolinate synthase [EC:2.5.1.72] D Shew_3435 nicotinate-nucleotide pyrophosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D Shew_2812 purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D Shew_1285 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D Shew_2135 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D Shew_1210 5'-nucleotidase / 3'-nucleotidase / exopolyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Shew_1511 HAD-superfamily hydrolase, subfamily IIA K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D Shew_2932 nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D Shew_1203 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Shew_1464 NH(3)-dependent NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D Shew_0198 competence/damage-inducible protein cinA K03742 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D Shew_1662 Silent information regulator protein Sir2 K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D Shew_2773 NAD(+) kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D Shew_0663 oxidoreductase K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D Shew_0664 alanine dehydrogenase/PNT domain protein K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D Shew_0662 NAD(P) transhydrogenase, beta subunit K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] D Shew_3173 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:slo00770] D Shew_1776 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shew_0289 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shew_1775 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Shew_0290 acetolactate synthase, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D Shew_0288 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Shew_0292 dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Shew_3133 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D Shew_2895 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D Shew_3134 pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D Shew_0143 pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33] D Shew_3482 Phosphopantothenoylcysteine decarboxylase / Phosphopantothenate-cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D Shew_1203 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Shew_3692 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D Shew_3441 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D Shew_1058 holo-acyl-carrier-protein synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D Shew_2656 4'-phosphopantetheinyl transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-] D Shew_2339 protein of unknown function DUF479 K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14] D Shew_0278 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Shew_0291 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Shew_2535 Pyridoxal-dependent decarboxylase K24264 panP; aspartate 1-decarboxylase [EC:4.1.1.11] C 00780 Biotin metabolism [PATH:slo00780] D Shew_1721 Methyltransferase type 11 K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197] D Shew_3523 beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Shew_2410 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Shew_3526 beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Shew_1605 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Shew_1603 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shew_1322 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shew_1673 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shew_3525 3-oxoacyl-(acyl-carrier-protein) reductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shew_2624 3-hydroxyacyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Shew_3630 bioH protein K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85] D Shew_1720 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D Shew_1718 aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D Shew_1722 dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D Shew_1719 biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D Shew_0142 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:slo00785] D Shew_2941 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D Shew_2942 lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D Shew_3429 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shew_3431 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Shew_3430 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Shew_1655 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D Shew_1656 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Shew_1925 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D Shew_1926 Transketolase, central region K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D Shew_0901 branched-chain alpha-keto acid dehydrogenase E1 component K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D Shew_1927 catalytic domain of components of various dehydrogenase complexes K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D Shew_3062 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D Shew_3064 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Shew_3063 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:slo00790] D Shew_3486 GTP cyclohydrolase K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D Shew_1157 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shew_1158 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shew_3226 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shew_0832 Alkaline phosphatase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D Shew_1002 dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D Shew_1003 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D Shew_3132 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D Shew_2833 Dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D Shew_0874 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D Shew_2305 FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D Shew_2446 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D Shew_1189 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Shew_0575 aminodeoxychorismate synthase, glutamine amidotransferase subunit K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85] D Shew_1903 aminodeoxychorismate synthase, subunit I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85] D Shew_1577 aminodeoxychorismate lyase apoprotein K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] D Shew_2399 dihydroneopterin aldolase K07589 folX; D-erythro-7,8-dihydroneopterin triphosphate epimerase [EC:5.1.99.7] D Shew_0048 short-chain dehydrogenase/reductase SDR K13938 folM; dihydromonapterin reductase / dihydrofolate reductase [EC:1.5.1.50 1.5.1.3] D Shew_1436 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D Shew_1435 Phenylalanine 4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D Shew_2034 short-chain dehydrogenase/reductase SDR K03793 PTR1; pteridine reductase [EC:1.5.1.33] D Shew_2061 Radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D Shew_2062 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D Shew_2654 GTP cyclohydrolase I K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D Shew_3688 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Shew_0087 GTP cyclohydrolase subunit MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Shew_0089 GTP cyclohydrolase subunit MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Shew_0091 molybdopterin synthase subunit MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D Shew_3787 molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D Shew_0088 molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D Shew_3687 molybdopterin-guanine dinucleotide biosynthesis protein B K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Shew_0046 molybdopterin molybdochelatase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Shew_2267 conserved hypothetical protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76] D Shew_3686 molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:slo00670] D Shew_0874 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D Shew_0048 short-chain dehydrogenase/reductase SDR K13938 folM; dihydromonapterin reductase / dihydrofolate reductase [EC:1.5.1.50 1.5.1.3] D Shew_0443 Formate-tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D Shew_2510 Methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D Shew_1185 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Shew_1512 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Shew_3412 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Shew_3737 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Shew_3064 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Shew_0710 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Shew_1041 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D Shew_2640 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D Shew_0522 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D Shew_3069 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:slo00860] D Shew_1449 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Shew_2913 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D Shew_1012 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D Shew_3382 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Shew_0318 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D Shew_0317 Uroporphyrinogen III synthase HEM4 K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D Shew_3422 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D Shew_3729 Coproporphyrinogen oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D Shew_3720 oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D Shew_0025 Protoporphyrinogen oxidase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3] D Shew_0678 protoporphyrinogen oxidase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3] D Shew_0023 Protoporphyrinogen oxidase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3] D Shew_1140 Ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D Shew_2229 Ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D Shew_0316 protein of unknown function DUF513, hemX K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D Shew_0672 uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D Shew_2332 siroheme synthase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76] D Shew_0117 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Shew_0370 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Shew_0118 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D Shew_0718 cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D Shew_0717 adenosylcobyric acid synthase (glutamine-hydrolysing) K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D Shew_1026 cobalamin biosynthesis protein CbiB K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D Shew_0716 adenosylcobinamide kinase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D Shew_0715 cobalamin-5'-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D Shew_0714 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D Shew_0711 Phosphoglycerate mutase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73] D Shew_2872 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] D Shew_2873 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:slo00130] D Shew_3743 chorismate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40] D Shew_3384 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D Shew_0360 3-octaprenyl-4hydroxybenzoate decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D Shew_3143 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Shew_3065 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240] D Shew_1948 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D Shew_3858 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D Shew_3066 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase / 2-octaprenyl-6-methoxyphenol hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D Shew_3373 demethylmenaquinone methyltransferase / 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D Shew_2921 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60] D Shew_3677 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] D Shew_3599 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9] D Shew_1408 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9] D Shew_3600 alpha/beta hydrolase fold K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20] D Shew_3601 O-succinylbenzoate-CoA synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113] D Shew_3602 O-succinylbenzoate-CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26] D Shew_3814 1,4-Dihydroxy-2-naphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36] D Shew_3192 uncharacterized domain 1 protein K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28] D Shew_2558 1,4-Dihydroxy-2-naphtoate prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D Shew_2155 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:slo00900] D Shew_2771 1-Deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Shew_2629 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D Shew_1207 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D Shew_2915 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D Shew_1208 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D Shew_1290 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D Shew_1102 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D Shew_1667 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shew_2858 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shew_3143 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Shew_2770 farnesyl-diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D Shew_0868 Trans-hexaprenyltranstransferase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D Shew_2631 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation [PATH:slo00907] D Shew_0019 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shew_2425 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Shew_2574 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Shew_0018 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Shew_2426 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D Shew_0752 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products D Shew_1646 beta-lactamase domain protein K05555 actIV; cyclase [EC:4.-.-.-] C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:slo00523] D Shew_1402 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Shew_1401 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Shew_3704 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Shew_1404 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Shew_3703 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Shew_1403 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Shew_3705 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides D Shew_3677 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] C 01055 Biosynthesis of vancomycin group antibiotics D Shew_1401 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Shew_3704 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis D Shew_2669 Penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11] C 00332 Carbapenem biosynthesis [PATH:slo00332] D Shew_2848 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Shew_3014 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Shew_3015 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D Shew_2847 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:slo00261] D Shew_1423 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D Shew_1422 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D Shew_0779 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Shew_1079 homoserine dehydrogenase / aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D Shew_0521 aspartate kinase / homoserine dehydrogenase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D Shew_2308 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Shew_1848 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Shew_2840 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:slo00521] D Shew_1922 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Shew_2321 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Shew_1402 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Shew_1401 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Shew_3704 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Shew_1404 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Shew_3703 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Shew_1403 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Shew_3705 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis C 00525 Acarbose and validamycin biosynthesis [PATH:slo00525] D Shew_1402 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Shew_1401 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Shew_3704 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:slo00401] D Shew_1068 prephenate dehydrogenase / chorismate mutase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12] D Shew_1951 aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Shew_2199 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Shew_1999 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] C 00404 Staurosporine biosynthesis D Shew_1113 tryptophan halogenase K14266 prnA; tryptophan 7-halogenase [EC:1.14.19.9] D Shew_2293 tryptophan halogenase K14266 prnA; tryptophan 7-halogenase [EC:1.14.19.9] C 00405 Phenazine biosynthesis D Shew_2251 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Shew_2252 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D Shew_1602 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Shew_1603 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shew_1322 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shew_1673 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shew_3525 3-oxoacyl-(acyl-carrier-protein) reductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D Shew_1604 acyl carrier protein K02078 acpP; acyl carrier protein D Shew_3512 phosphopantetheine-binding K02078 acpP; acyl carrier protein D Shew_3511 acyl carrier protein, putative K02078 acpP; acyl carrier protein D Shew_1327 conserved hypothetical protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:slo00999] D Shew_0751 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Shew_3344 dTDP-4-dehydrorhamnose reductase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Shew_3727 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:slo00362] D Shew_0018 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Shew_2426 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Shew_3046 Carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D Shew_2734 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D Shew_2425 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Shew_0019 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shew_2864 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D Shew_1221 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Shew_0900 acyl-CoA dehydrogenase domain protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D Shew_1667 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shew_2858 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:slo00627] D Shew_1628 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D Shew_3143 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00364 Fluorobenzoate degradation [PATH:slo00364] D Shew_0788 dienelactone hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00625 Chloroalkane and chloroalkene degradation [PATH:slo00625] D Shew_1166 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Shew_1540 Alcohol dehydrogenase, zinc-binding domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shew_1910 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:slo00361] D Shew_0788 dienelactone hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00623 Toluene degradation [PATH:slo00623] D Shew_0788 dienelactone hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00622 Xylene degradation C 00633 Nitrotoluene degradation [PATH:slo00633] D Shew_0688 dihydropteridine reductase K10679 nfnB; nitroreductase / dihydropteridine reductase [EC:1.-.-.- 1.5.1.34] D Shew_0507 NADH:flavin oxidoreductase/NADH oxidase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] D Shew_3098 NADH:flavin oxidoreductase/NADH oxidase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] C 00642 Ethylbenzene degradation D Shew_0018 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Shew_2426 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation [PATH:slo00643] D Shew_2154 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D Shew_1439 maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D Shew_1438 fumarylacetoacetate (FAA) hydrolase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2] C 00791 Atrazine degradation C 00930 Caprolactam degradation [PATH:slo00930] D Shew_0019 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shew_2425 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation [PATH:slo00626] D Shew_1166 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Shew_1540 Alcohol dehydrogenase, zinc-binding domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shew_1910 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:slo03020] D Shew_0151 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Shew_0152 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Shew_0183 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Shew_3498 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:slo03010] D Shew_1954 SSU ribosomal protein S1P K02945 RP-S1; small subunit ribosomal protein S1 D Shew_2635 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2 D Shew_0164 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3 D Shew_0182 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4 D Shew_0175 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5 D Shew_3284 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6 D Shew_0154 SSU ribosomal protein S7P K02992 RP-S7; small subunit ribosomal protein S7 D Shew_0172 SSU ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8 D Shew_3293 SSU ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9 D Shew_0157 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10 D Shew_0181 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11 D Shew_0153 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12 D Shew_0180 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13 D Shew_0171 SSU ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14 D Shew_2824 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15 D Shew_1063 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16 D Shew_0167 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17 D Shew_3282 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18 D Shew_0162 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19 D Shew_1096 SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20 D Shew_0999 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21 D Shew_0148 LSU ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1 D Shew_0161 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2 D Shew_0158 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3 D Shew_0159 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4 D Shew_0170 LSU ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5 D Shew_0173 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6 D Shew_0150 LSU ribosomal protein L12P / LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12 D Shew_3281 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9 D Shew_0149 LSU ribosomal protein L10P K02864 RP-L10; large subunit ribosomal protein L10 D Shew_0147 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11 D Shew_3294 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13 D Shew_0168 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14 D Shew_0177 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15 D Shew_0165 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16 D Shew_0184 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17 D Shew_0174 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18 D Shew_1066 LSU ribosomal protein L19P K02884 RP-L19; large subunit ribosomal protein L19 D Shew_2029 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20 D Shew_0869 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21 D Shew_0163 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22 D Shew_0160 LSU ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23 D Shew_0169 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24 D Shew_1830 LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25 D Shew_0870 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27 D Shew_3480 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28 D Shew_0166 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29 D Shew_0176 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30 D Shew_0381 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31 D Shew_1599 LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32 D Shew_3479 LSU ribosomal protein L33P K02913 RP-L33; large subunit ribosomal protein L33 D Shew_3869 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34 D Shew_2030 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35 D Shew_0179 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36 D Shew_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shew_R0125 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shew_R0009 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shew_R0085 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shew_R0118 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shew_R0111 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shew_R0122 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shew_R0104 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shew_R0004 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shew_R0110 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shew_R0115 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shew_R0124 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shew_R0121 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shew_R0082 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shew_R0103 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shew_R0010 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shew_R0005 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shew_R0011 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shew_R0081 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shew_R0112 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shew_R0109 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shew_R0123 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shew_R0120 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shew_R0102 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shew_R0114 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:slo00970] D Shew_R0003 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shew_R0083 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shew_R0116 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shew_R0040 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shew_R0048 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shew_R0014 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shew_R0033 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shew_R0088 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shew_R0027 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shew_R0028 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shew_R0030 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shew_R0029 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shew_R0075 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shew_R0077 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shew_R0076 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shew_R0074 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shew_R0012 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shew_R0080 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shew_R0119 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shew_R0079 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shew_R0062 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Shew_R0066 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Shew_R0094 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Shew_R0098 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Shew_R0097 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Shew_R0041 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shew_R0042 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shew_R0045 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shew_R0044 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shew_R0043 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shew_R0047 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shew_R0046 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shew_R0019 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shew_R0061 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shew_R0020 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shew_R0067 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shew_R0021 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shew_R0022 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shew_R0008 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shew_R0015 tRNA-His K14226 tRNA-His; tRNA His D Shew_R0087 tRNA-His K14226 tRNA-His; tRNA His D Shew_R0002 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Shew_R0084 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Shew_R0117 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Shew_R0063 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shew_R0065 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shew_R0108 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shew_R0093 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shew_R0099 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shew_R0095 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shew_R0107 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shew_R0092 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shew_R0050 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shew_R0055 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shew_R0053 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shew_R0056 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shew_R0052 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shew_R0054 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shew_R0051 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shew_R0023 tRNA-Met K14230 tRNA-Met; tRNA Met D Shew_R0096 tRNA-Met K14230 tRNA-Met; tRNA Met D Shew_R0100 tRNA-Met K14230 tRNA-Met; tRNA Met D Shew_R0057 tRNA-Met K14230 tRNA-Met; tRNA Met D Shew_R0058 tRNA-Met K14230 tRNA-Met; tRNA Met D Shew_R0059 tRNA-Met K14230 tRNA-Met; tRNA Met D Shew_R0060 tRNA-Met K14230 tRNA-Met; tRNA Met D Shew_R0091 tRNA-Met K14230 tRNA-Met; tRNA Met D Shew_R0025 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Shew_R0105 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Shew_R0016 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shew_R0089 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shew_R0017 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shew_R0049 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shew_R0026 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shew_R0031 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shew_R0018 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shew_R0068 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shew_R0064 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shew_R0113 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shew_R0006 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shew_R0024 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shew_R0101 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Shew_R0007 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shew_R0073 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shew_R0071 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shew_R0072 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shew_R0034 tRNA-Val K14237 tRNA-Val; tRNA Val D Shew_R0038 tRNA-Val K14237 tRNA-Val; tRNA Val D Shew_R0037 tRNA-Val K14237 tRNA-Val; tRNA Val D Shew_R0036 tRNA-Val K14237 tRNA-Val; tRNA Val D Shew_R0039 tRNA-Val K14237 tRNA-Val; tRNA Val D Shew_R0035 tRNA-Val K14237 tRNA-Val; tRNA Val D Shew_R0069 tRNA-Val K14237 tRNA-Val; tRNA Val D Shew_R0070 tRNA-Val K14237 tRNA-Val; tRNA Val D Shew_1449 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Shew_2516 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Shew_1217 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Shew_2079 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Shew_1900 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Shew_0010 Glycine--tRNA ligase K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Shew_0009 Glycine--tRNA ligase K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Shew_2032 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Shew_2020 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Shew_2511 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Shew_1573 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Shew_3737 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Shew_0923 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Shew_2929 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Shew_1099 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Shew_0812 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Shew_0378 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Shew_2596 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Shew_1291 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Shew_2216 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Shew_2215 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Shew_1022 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Shew_0221 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:slo03060] D Shew_0178 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D Shew_0145 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D Shew_2830 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG D Shew_2335 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Shew_2334 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF D Shew_2336 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC D Shew_3866 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D Shew_3445 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Shew_3804 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB D Shew_1062 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Shew_R0086 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA D Shew_3606 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Shew_3376 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Shew_3377 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB D Shew_3378 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D Shew_0362 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D Shew_1053 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D Shew_1100 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:slo04122] D Shew_2317 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Shew_3354 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Shew_0968 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D Shew_0015 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D Shew_1842 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D Shew_2017 DsrH like protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B D Shew_2016 DsrE family protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C D Shew_2015 DsrE family protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D Shew_2018 DsrC family protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D Shew_1560 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Shew_0091 molybdopterin synthase subunit MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D Shew_3688 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Shew_0087 GTP cyclohydrolase subunit MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Shew_0090 molybdopterin synthase subunit MoaD K03636 moaD; sulfur-carrier protein D Shew_0047 [molybdopterin synthase] sulfurylase K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D Shew_0089 GTP cyclohydrolase subunit MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Shew_3787 molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D Shew_0088 molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D Shew_2766 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D Shew_2093 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein D Shew_2094 UBA/THIF-type NAD/FAD binding protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] C 03050 Proteasome C 03018 RNA degradation [PATH:slo03018] D Shew_1038 NUDIX hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D Shew_1593 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12] D Shew_0339 DEAD/DEAH box helicase domain protein K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D Shew_1205 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Shew_2822 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Shew_0604 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Shew_2777 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Shew_2800 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Shew_1884 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Shew_0950 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Shew_1454 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Shew_3289 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Shew_0531 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Shew_3474 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Shew_0337 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Shew_2844 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Shew_0472 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Shew_0566 RNA-binding protein Hfq K03666 hfq; host factor-I protein D Shew_3079 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D Shew_3131 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:slo03030] D Shew_1871 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shew_0050 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shew_2111 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shew_2368 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shew_2620 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Shew_2235 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Shew_1580 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Shew_2931 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Shew_0924 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Shew_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Shew_3278 primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Shew_0997 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D Shew_0535 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Shew_2112 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Shew_1682 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Shew_2621 RNase HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Shew_3714 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Shew_2377 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:slo03410] D Shew_2072 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Shew_3073 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D Shew_1123 A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D Shew_3690 Formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D Shew_1452 DNA-3-methyladenine glycosylase II / DNA-O6-methylguanine--protein-cysteine S-methyltransferase / Transcriptional regulator Ada K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D Shew_0011 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D Shew_2262 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Shew_1083 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D Shew_3714 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Shew_0772 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Shew_2377 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:slo03420] D Shew_1630 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Shew_0533 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D Shew_2064 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D Shew_1825 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D Shew_1264 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Shew_3385 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Shew_3714 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Shew_2377 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:slo03430] D Shew_1214 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Shew_0564 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Shew_1037 DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH D Shew_1264 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Shew_3385 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Shew_1611 Exodeoxyribonuclease I subunit C K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D Shew_1296 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Shew_2769 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Shew_0772 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Shew_0535 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Shew_2620 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Shew_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Shew_2235 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Shew_2931 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Shew_1580 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Shew_1871 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shew_0050 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shew_2111 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shew_2368 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shew_0924 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Shew_2377 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Shew_0216 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] C 03440 Homologous recombination [PATH:slo03440] D Shew_0772 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Shew_0535 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Shew_0003 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D Shew_1056 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Shew_2233 recombination protein RecR K06187 recR; recombination protein RecR D Shew_1215 recA protein K03553 recA; recombination protein RecA D Shew_3714 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Shew_2076 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D Shew_2075 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Shew_2077 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Shew_3507 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Shew_1142 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Shew_2130 exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D Shew_2129 exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D Shew_2131 exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D Shew_2620 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Shew_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Shew_2235 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Shew_2931 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Shew_1580 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Shew_1871 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shew_0050 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shew_2111 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shew_2368 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shew_0924 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Shew_0379 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D Shew_3283 restart primosome assembly protein PriB K02686 priB; primosomal replication protein N D Shew_2485 primosomal replication protein N'', putative K04067 priC; primosomal replication protein N'' C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 [PATH:slo03250] D Shew_2890 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Shew_0827 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus D Shew_2420 peptidase M16 domain protein K01408 IDE; insulysin [EC:3.4.24.56] C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:slo02010] D Shew_3683 extracellular solute-binding protein, family 1 K05772 tupA; tungstate transport system substrate-binding protein D Shew_3684 binding-protein-dependent transport systems inner membrane component K05773 tupB; tungstate transport system permease protein D Shew_3685 ABC transporter-related protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D Shew_0092 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Shew_2687 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Shew_0093 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein D Shew_0094 ABC transporter-related protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D Shew_0861 extracellular solute-binding protein, family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Shew_0862 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Shew_0863 ABC transporter-related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Shew_0973 extracellular solute-binding protein, family 1 K11073 potF; putrescine transport system substrate-binding protein D Shew_0976 binding-protein-dependent transport systems inner membrane component K11074 potI; putrescine transport system permease protein D Shew_0975 binding-protein-dependent transport systems inner membrane component K11075 potH; putrescine transport system permease protein D Shew_0974 spermidine/putrescine ABC transporter ATPase subunit K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D Shew_3301 toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein D Shew_3302 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Shew_3303 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Shew_3300 anti-sigma-factor antagonist K07122 mlaB; phospholipid transport system transporter-binding protein D Shew_3304 ABC transporter-related protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Shew_3045 sugar-binding protein, putative K10439 rbsB; ribose transport system substrate-binding protein D Shew_2747 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D Shew_1698 binding-protein-dependent transport systems inner membrane component K02037 pstC; phosphate transport system permease protein D Shew_1699 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein D Shew_1700 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Shew_2347 phosphonate ABC transporter, periplasmic phosphonate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein D Shew_2345 binding-protein-dependent transport systems inner membrane component K02042 phnE; phosphonate transport system permease protein D Shew_2346 ABC transporter-related protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D Shew_3166 extracellular solute-binding protein, family 3 K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein D Shew_3165 polar amino acid ABC transporter, inner membrane subunit K17077 artQ; arginine/lysine/histidine transport system permease protein D Shew_3164 ABC transporter-related protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D Shew_2607 putative branched-chain amino acid ABC transporter K01999 livK; branched-chain amino acid transport system substrate-binding protein D Shew_2609 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Shew_2608 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Shew_2611 ABC transporter-related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D Shew_2606 ABC transporter-related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D Shew_2498 extracellular solute-binding protein, family 5 K19226 sapA; cationic peptide transport system substrate-binding protein D Shew_2499 binding-protein-dependent transport systems inner membrane component K19227 sapB; cationic peptide transport system permease protein D Shew_2500 binding-protein-dependent transport systems inner membrane component K19228 sapC; cationic peptide transport system permease protein D Shew_2501 oligopeptide/dipeptide ABC transporter, ATPase subunit K19229 sapD; cationic peptide transport system ATP-binding protein D Shew_2502 ABC transporter-related protein K19230 sapF; cationic peptide transport system ATP-binding protein D Shew_0719 periplasmic binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein D Shew_3674 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein D Shew_3782 ABC-2 type transporter K09696 natB; sodium transport system permease protein D Shew_3781 ABC transporter-related protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D Shew_1632 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein D Shew_1634 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein D Shew_1633 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D Shew_0187 Heme exporter protein D (CcmD) K02196 ccmD; heme exporter protein D D Shew_0188 heme exporter protein CcmC K02195 ccmC; heme exporter protein C D Shew_0189 heme exporter protein CcmB K02194 ccmB; heme exporter protein B D Shew_0190 heme exporter protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D Shew_0940 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein D Shew_0941 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D Shew_3310 ABC transporter-related protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D Shew_0357 copper ABC transporter, permease protein K19341 nosY; Cu-processing system permease protein D Shew_3403 ABC-2 type transporter K19341 nosY; Cu-processing system permease protein D Shew_0356 ABC transporter-related protein K19340 nosF; Cu-processing system ATP-binding protein D Shew_3402 ABC transporter-related protein K19340 nosF; Cu-processing system ATP-binding protein D Shew_3604 cell division protein FtsX K09811 ftsX; cell division transport system permease protein D Shew_3605 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D Shew_1638 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D Shew_0853 ABC transporter-related protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D Shew_1451 ABC transporter-related protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D Shew_0312 ABC transporter-related protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D Shew_0512 ABC transporter-related protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D Shew_0513 ABC transporter-related protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D Shew_0614 ABC transporter, transmembrane region, type 1 K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D Shew_0613 ABC transporter, transmembrane region, type 1 K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD C 02060 Phosphotransferase system (PTS) [PATH:slo02060] D Shew_1865 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D Shew_1866 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D Shew_1864 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Shew_2641 PTS system, glucose-like IIB subunint K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D Shew_1039 PTSINtr with GAF domain, PtsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D Shew_3315 Phosphotransferase system, phosphocarrier protein HPr K08485 ptsO; phosphocarrier protein NPr D Shew_3313 PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:slo03070] D Shew_0544 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Shew_3619 general secretion pathway protein D K02453 gspD; general secretion pathway protein D D Shew_3620 general secretion pathway protein C K02452 gspC; general secretion pathway protein C D Shew_3617 general secretion pathway protein F K02455 gspF; general secretion pathway protein F D Shew_3616 general secretion pathway protein G K02456 gspG; general secretion pathway protein G D Shew_3615 general secretion pathway protein H K02457 gspH; general secretion pathway protein H D Shew_3614 general secretion pathway protein I K02458 gspI; general secretion pathway protein I D Shew_3613 general secretion pathway protein J K02459 gspJ; general secretion pathway protein J D Shew_3612 General secretion pathway protein K K02460 gspK; general secretion pathway protein K D Shew_3611 general secretion pathway protein L K02461 gspL; general secretion pathway protein L D Shew_3610 General secretion pathway M protein K02462 gspM; general secretion pathway protein M D Shew_3618 type II secretion system protein E (GspE) K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D Shew_2335 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Shew_2334 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF D Shew_0145 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D Shew_2830 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG D Shew_0178 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D Shew_2336 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC D Shew_3866 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D Shew_3445 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Shew_3606 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Shew_3804 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB D Shew_1062 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Shew_3376 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Shew_3377 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB D Shew_3378 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D Shew_0197 protein of unknown function DUF796 K11903 hcp; type VI secretion system secreted protein Hcp B B 09132 Signal transduction C 02020 Two-component system [PATH:slo02020] D Shew_2748 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Shew_2749 two component transcriptional regulator, winged helix family K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D Shew_1157 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shew_1158 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shew_3226 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shew_0832 Alkaline phosphatase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D Shew_2747 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D Shew_2696 integral membrane sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shew_2349 integral membrane sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shew_2348 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Shew_2695 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Shew_3638 integral membrane sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D Shew_3637 two component transcriptional regulator, winged helix family K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D Shew_3571 integral membrane sensor signal transduction histidine kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D Shew_3570 two component transcriptional regulator, winged helix family K07662 cpxR; two-component system, OmpR family, response regulator CpxR D Shew_0080 integral membrane sensor signal transduction histidine kinase K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3] D Shew_0081 two component transcriptional regulator, winged helix family K07661 rstA; two-component system, OmpR family, response regulator RstA D Shew_2206 two component transcriptional regulator, winged helix family K07661 rstA; two-component system, OmpR family, response regulator RstA D Shew_3259 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Shew_3258 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D Shew_3535 efflux transporter, RND family, MFP subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D Shew_3534 heavy metal efflux pump, CzcA family K07787 cusA; copper/silver efflux system protein D Shew_1356 flagellin domain protein K02406 fliC; flagellin D Shew_1357 flagellin domain protein K02406 fliC; flagellin D Shew_1383 RNA polymerase, sigma 28 subunit, FliA/WhiG family K02405 fliA; RNA polymerase sigma factor FliA D Shew_2768 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Shew_2801 multi-sensor hybrid histidine kinase K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3] D Shew_2803 two component transcriptional regulator, winged helix family K07772 torR; two-component system, OmpR family, torCAD operon response regulator TorR D Shew_2797 trimethylamine-N-oxide reductase c-type cytochrome TorC K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC D Shew_2798 trimethylamine-N-oxide reductase TorA K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3] D Shew_2799 cytoplasmic chaperone TorD family protein K03533 torD; TorA specific chaperone D Shew_0777 two component transcriptional regulator, winged helix family K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA D Shew_0118 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D Shew_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Shew_0803 integral membrane sensor signal transduction histidine kinase K18072 parS; two-component system, OmpR family, sensor kinase ParS [EC:2.7.13.3] D Shew_1936 two component transcriptional regulator, winged helix family K19610 pfeR; two-component system, OmpR family, response regulator PfeR D Shew_2962 Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D Shew_3781 ABC transporter-related protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D Shew_3782 ABC-2 type transporter K09696 natB; sodium transport system permease protein D Shew_0843 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3] D Shew_0842 two component transcriptional regulator, LuxR family K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP D Shew_2588 lipoprotein, putative K06080 rcsF; RcsF protein D Shew_1200 Hpt sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D Shew_1824 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D Shew_1218 carbon storage regulator, CsrA K03563 csrA; carbon storage regulator D Shew_1968 beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6] D Shew_3505 integral membrane sensor signal transduction histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D Shew_3506 two component transcriptional regulator, LuxR family K07693 desR; two-component system, NarL family, response regulator DesR D Shew_0646 SAF domain protein K02279 cpaB; pilus assembly protein CpaB D Shew_0645 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC D Shew_0644 FHA domain containing protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Shew_0643 type II secretion system protein K12510 tadB; tight adherence protein B D Shew_0642 type II secretion system protein K12511 tadC; tight adherence protein C D Shew_2637 UTP-GlnB uridylyltransferase, GlnD K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D Shew_1110 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D Shew_3560 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D Shew_3561 nitrogen metabolism transcriptional regulator, NtrC, Fis family K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D Shew_0972 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shew_3554 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shew_3088 short chain fatty acid transporter K02106 atoE; short-chain fatty acids transporter D Shew_1667 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shew_2858 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shew_1443 integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Shew_1442 two component, sigma54 specific, transcriptional regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D Shew_3311 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Shew_3436 methylation site containing protein K02650 pilA; type IV pilus assembly protein PilA D Shew_1763 Ni/Fe-hydrogenase, b-type cytochrome subunit K03620 hyaC; Ni/Fe-hydrogenase 1 B-type cytochrome subunit D Shew_0110 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Shew_1344 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Shew_1310 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_0111 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein D Shew_0085 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_0237 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_0922 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_0876 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_0808 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_0891 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein D Shew_0596 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_1868 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_2119 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_2217 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_2263 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_2301 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_2952 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_2954 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_2902 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_2577 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor D Shew_2159 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor D Shew_1390 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Shew_0112 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Shew_1391 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Shew_1386 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Shew_0113 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Shew_1384 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Shew_0114 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Shew_0109 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Shew_1387 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Shew_1343 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shew_2144 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shew_1457 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shew_1446 TRAP dicarboxylate transporter, DctP subunit K11688 dctP; C4-dicarboxylate-binding protein DctP D Shew_1445 Tripartite ATP-independent periplasmic transporter, DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D Shew_1444 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Shew_0610 histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D Shew_1970 histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D Shew_0609 two component transcriptional regulator, LuxR family K13041 ttrR; two-component system, LuxR family, response regulator TtrR D Shew_1969 two component transcriptional regulator, LuxR family K13041 ttrR; two-component system, LuxR family, response regulator TtrR D Shew_3243 molydopterin dinucleotide-binding region K08357 ttrA; tetrathionate reductase subunit A D Shew_3244 4Fe-4S ferredoxin, iron-sulfur binding domain protein K08358 ttrB; tetrathionate reductase subunit B D Shew_3240 two component transcriptional regulator, LuxR family K14987 fixJ; two-component system, LuxR family, response regulator FixJ D Shew_1362 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D Shew_1363 PAS/PAC sensor signal transduction histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D Shew_1364 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Shew_0585 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Shew_1126 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Shew_3343 integral membrane sensor signal transduction histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D Shew_3342 response regulator receiver protein K15012 regA; two-component system, response regulator RegA D Shew_0570 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D Shew_0571 Cytochrome b/b6, N-terminal domain K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D Shew_0572 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D Shew_1985 cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D Shew_1986 cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D Shew_1987 Cbb3-type cytochrome oxidase component K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D Shew_1988 cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D Shew_1302 cytochrome bd ubiquinol oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D Shew_1303 cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D Shew_1304 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D Shew_0544 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Shew_1399 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein D Shew_1588 protein tyrosine phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D Shew_1341 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis [PATH:slo04148] D Shew_3392 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D Shew_0570 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:slo02024] D Shew_2882 quorum-sensing autoinducer 2 (AI-2), LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D Shew_0566 RNA-binding protein Hfq K03666 hfq; host factor-I protein D Shew_2251 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Shew_2252 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Shew_0851 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Shew_1067 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Shew_1547 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Shew_2607 putative branched-chain amino acid ABC transporter K01999 livK; branched-chain amino acid transport system substrate-binding protein D Shew_2609 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Shew_2608 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Shew_2611 ABC transporter-related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D Shew_2606 ABC transporter-related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D Shew_0510 putative outer membrane adhesin like proteiin K20276 bapA; large repetitive protein D Shew_3084 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_2610 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_3776 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_2188 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_2866 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_3502 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_0585 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Shew_2446 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D Shew_1187 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Shew_1306 CMP/dCMP deaminase, zinc-binding K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Shew_2291 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D Shew_2290 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D Shew_3866 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D Shew_2443 peptidase S8 and S53, subtilisin, kexin, sedolisin K14645 K14645; serine protease [EC:3.4.21.-] D Shew_2209 peptidase S8 and S53, subtilisin, kexin, sedolisin K14645 K14645; serine protease [EC:3.4.21.-] D Shew_3021 Endonuclease I K14645 K14645; serine protease [EC:3.4.21.-] D Shew_0145 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D Shew_2830 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG D Shew_0178 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D Shew_2336 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC D Shew_3445 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Shew_3606 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Shew_3804 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB D Shew_1062 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:slo02030] D Shew_1310 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_0111 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein D Shew_0085 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_0237 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_0922 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_0876 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_0808 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_0891 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein D Shew_0596 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_1868 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_2119 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_2217 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_2263 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_2301 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_2952 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_2954 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_2902 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_2577 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor D Shew_2159 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor D Shew_3045 sugar-binding protein, putative K10439 rbsB; ribose transport system substrate-binding protein D Shew_1386 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Shew_0113 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Shew_1390 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Shew_0112 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Shew_1391 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Shew_1384 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Shew_0114 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Shew_1385 chemotaxis phosphatase, CheZ K03414 cheZ; chemotaxis protein CheZ D Shew_3275 CheC domain protein K03409 cheX; chemotaxis protein CheX D Shew_0109 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Shew_1387 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Shew_1343 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shew_2144 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shew_1457 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shew_0439 CheD, stimulates methylation of MCP proteins K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D Shew_0110 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Shew_1344 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Shew_1367 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Shew_1373 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Shew_1374 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Shew_2768 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Shew_2767 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:slo02040] D Shew_1365 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Shew_1366 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Shew_1367 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Shew_1368 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D Shew_1369 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Shew_1370 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D Shew_1371 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D Shew_3742 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Shew_1372 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Shew_1373 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Shew_1374 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Shew_1375 flagellar biosynthesis protein, FliO K02418 fliO; flagellar protein FliO/FliZ D Shew_1376 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Shew_1377 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Shew_1378 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Shew_1380 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Shew_1379 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Shew_1342 SAF domain protein K02386 flgA; flagellar basal body P-ring formation protein FlgA D Shew_1345 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Shew_1346 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D Shew_1347 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D Shew_1348 flagellar basal body FlaE domain protein K02390 flgE; flagellar hook protein FlgE D Shew_1349 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D Shew_1350 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D Shew_1351 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH D Shew_1352 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI D Shew_1353 flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D Shew_1354 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Shew_1355 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D Shew_1339 protein of unknown function DUF400 K09860 flgP; outer membrane protein FlgP D Shew_3290 Sel1 domain protein repeat-containing protein K21217 motX; sodium-type polar flagellar protein MotX D Shew_1521 OmpA/MotB domain protein K21218 motY; sodium-type flagellar protein MotY D Shew_1356 flagellin domain protein K02406 fliC; flagellin D Shew_1357 flagellin domain protein K02406 fliC; flagellin D Shew_1359 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2 D Shew_1361 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D Shew_2768 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Shew_2767 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Shew_1341 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D Shew_1340 FlgN family protein K02399 flgN; flagellar biosynthesis protein FlgN D Shew_0996 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor D Shew_1362 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D Shew_3311 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Shew_1364 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Shew_1383 RNA polymerase, sigma 28 subunit, FliA/WhiG family K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D Shew_1205 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism D Shew_0710 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:slo01501] D Shew_2892 major facilitator superfamily MFS_1 K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D Shew_1626 glycoside hydrolase, family 3 domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D Shew_1968 beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6] D Shew_2995 TonB family protein K02172 blaR1; bla regulator protein blaR1 D Shew_2994 transcriptional repressor, CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D Shew_0803 integral membrane sensor signal transduction histidine kinase K18072 parS; two-component system, OmpR family, sensor kinase ParS [EC:2.7.13.3] D Shew_1163 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shew_0031 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shew_1851 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shew_1177 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shew_0032 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Shew_1852 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shew_1164 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Shew_0544 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Shew_0207 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Shew_2935 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Shew_3459 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Shew_3220 Beta-lactamase K17838 oxa; beta-lactamase class D [EC:3.5.2.6] C 01502 Vancomycin resistance [PATH:slo01502] D Shew_2133 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Shew_3277 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Shew_3457 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Shew_3456 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Shew_3453 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:slo01503] D Shew_2696 integral membrane sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shew_2349 integral membrane sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shew_2348 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Shew_2695 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Shew_0803 integral membrane sensor signal transduction histidine kinase K18072 parS; two-component system, OmpR family, sensor kinase ParS [EC:2.7.13.3] D Shew_2041 protein of unknown function DUF1705 K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D Shew_2498 extracellular solute-binding protein, family 5 K19226 sapA; cationic peptide transport system substrate-binding protein D Shew_2499 binding-protein-dependent transport systems inner membrane component K19227 sapB; cationic peptide transport system permease protein D Shew_2500 binding-protein-dependent transport systems inner membrane component K19228 sapC; cationic peptide transport system permease protein D Shew_2501 oligopeptide/dipeptide ABC transporter, ATPase subunit K19229 sapD; cationic peptide transport system ATP-binding protein D Shew_2502 ABC transporter-related protein K19230 sapF; cationic peptide transport system ATP-binding protein D Shew_3571 integral membrane sensor signal transduction histidine kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D Shew_3570 two component transcriptional regulator, winged helix family K07662 cpxR; two-component system, OmpR family, response regulator CpxR D Shew_0563 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Shew_2373 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D Shew_0265 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D Shew_2890 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Shew_0827 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Shew_1163 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shew_0031 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shew_1851 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shew_1177 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shew_0032 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Shew_1852 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shew_1164 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Shew_0544 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Shew_2623 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:slo01000] C 01001 Protein kinases [BR:slo01001] D Shew_0479 HipA domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D Shew_2748 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Shew_2696 integral membrane sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shew_2349 integral membrane sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shew_3638 integral membrane sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D Shew_0080 integral membrane sensor signal transduction histidine kinase K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3] D Shew_3571 integral membrane sensor signal transduction histidine kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D Shew_3259 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Shew_2801 multi-sensor hybrid histidine kinase K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3] D Shew_0803 integral membrane sensor signal transduction histidine kinase K18072 parS; two-component system, OmpR family, sensor kinase ParS [EC:2.7.13.3] D Shew_0895 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Shew_0843 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3] D Shew_1200 Hpt sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D Shew_3505 integral membrane sensor signal transduction histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D Shew_2328 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D Shew_3560 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D Shew_1443 integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Shew_3681 integral membrane sensor signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D Shew_1386 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Shew_0113 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Shew_0610 histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D Shew_1970 histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D Shew_1363 PAS/PAC sensor signal transduction histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D Shew_3343 integral membrane sensor signal transduction histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:slo01009] D Shew_2232 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG D Shew_2810 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:slo01002] D Shew_1100 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D Shew_3440 Prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Shew_1762 hydrogenase expression/formation protein K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-] D Shew_1298 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Shew_0971 peptidase C26 K07010 K07010; putative glutamine amidotransferase D Shew_2532 peptidase C26 K07010 K07010; putative glutamine amidotransferase D Shew_2302 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Shew_1032 glutamate synthase (NADPH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Shew_3839 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Shew_3038 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Shew_1509 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Shew_1794 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70] D Shew_1006 ErfK/YbiS/YcfS/YnhG family protein K19235 ybiS; L,D-transpeptidase YbiS D Shew_1828 Peptidoglycan-binding domain 1 protein K21470 ycbB; L,D-transpeptidase YcbB D Shew_2742 peptidase M1, membrane alanine aminopeptidase K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6] D Shew_0835 peptidase M1, membrane alanine aminopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2] D Shew_1803 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D Shew_2053 Peptidyl-dipeptidase A K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1] D Shew_3657 Oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70] D Shew_2161 Peptidyl-dipeptidase Dcp K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5] D Shew_2212 Peptidyl-dipeptidase Dcp K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5] D Shew_2581 Peptidyl-dipeptidase Dcp K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5] D Shew_3744 peptidase M6, immune inhibitor A K09607 ina; immune inhibitor A [EC:3.4.24.-] D Shew_1685 Microbial collagenase K01387 colA; microbial collagenase [EC:3.4.24.3] D Shew_3732 Microbial collagenase K01387 colA; microbial collagenase [EC:3.4.24.3] D Shew_2973 Endothelin-converting enzyme 1 K07386 pepO; putative endopeptidase [EC:3.4.24.-] D Shew_3426 Endothelin-converting enzyme 1 K07386 pepO; putative endopeptidase [EC:3.4.24.-] D Shew_2420 peptidase M16 domain protein K01408 IDE; insulysin [EC:3.4.24.56] D Shew_1226 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-] D Shew_0655 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-] D Shew_3581 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-] D Shew_3580 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-] D Shew_0939 PepA aminopeptidase. Metallo peptidase. MEROPS family M17 K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Shew_1677 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Shew_2851 peptidase M17, leucyl aminopeptidase domain protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Shew_3127 PepB aminopeptidase K07751 pepB; PepB aminopeptidase [EC:3.4.11.23] D Shew_1862 succinyldiaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Shew_2793 succinyldiaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Shew_0982 peptidase M20 K13049 PM20D1; carboxypeptidase PM20D1 [EC:3.4.17.-] D Shew_3250 peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D Shew_2160 dipeptidase, putative K01270 pepD; dipeptidase D [EC:3.4.13.-] D Shew_2852 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D Shew_2455 peptidase M23B K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-] D Shew_2636 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D Shew_0020 Xaa-Pro dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9] D Shew_0955 peptidase M24 K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9] D Shew_0952 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D Shew_2358 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D Shew_0947 Carboxypeptidase Taq K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19] D Shew_1243 Peptidyl-Lys metalloendopeptidase K08646 MEP; peptidyl-Lys metalloendopeptidase [EC:3.4.24.20] D Shew_2834 membrane protease FtsH catalytic subunit K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Shew_1723 HtpX-2 peptidase. Metallo peptidase. MEROPS family M48B K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D Shew_1841 peptidase M48, Ste24p K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-] D Shew_2628 putative membrane-associated zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D Shew_2995 TonB family protein K02172 blaR1; bla regulator protein blaR1 D Shew_0921 conserved hypothetical protein K21429 impA; immunomodulating metalloprotease D Shew_1279 protein of unknown function DUF980 K09933 mtfA; MtfA peptidase D Shew_3296 protease Do K04772 degQ; serine protease DegQ [EC:3.4.21.-] D Shew_3297 periplasmic serine protease DegS K04691 hhoB; serine protease DegS [EC:3.4.21.-] D Shew_2443 peptidase S8 and S53, subtilisin, kexin, sedolisin K14645 K14645; serine protease [EC:3.4.21.-] D Shew_2209 peptidase S8 and S53, subtilisin, kexin, sedolisin K14645 K14645; serine protease [EC:3.4.21.-] D Shew_3021 Endonuclease I K14645 K14645; serine protease [EC:3.4.21.-] D Shew_0781 peptidase S8 and S53, subtilisin, kexin, sedolisin K14647 vpr; minor extracellular serine protease Vpr [EC:3.4.21.-] D Shew_1522 Prolyl oligopeptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26] D Shew_0774 peptidase S9B, dipeptidylpeptidase IV domain protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D Shew_0039 Oligopeptidase B K01354 ptrB; oligopeptidase B [EC:3.4.21.83] D Shew_2939 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Shew_1962 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D Shew_2508 ATP-dependent Clp protease proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D Shew_2506 Lon-A peptidase. Serine peptidase. MEROPS family S16 K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D Shew_0127 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D Shew_0362 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D Shew_1053 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D Shew_3544 alpha/beta hydrolase fold K01259 pip; proline iminopeptidase [EC:3.4.11.5] D Shew_1802 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D Shew_3808 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D Shew_2716 peptidase S41 K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D Shew_1234 peptidase S41 K08676 tri; tricorn protease [EC:3.4.21.-] D Shew_2669 Penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11] D Shew_1941 signal peptide peptidase SppA, 67K type K04773 sppA; protease IV [EC:3.4.21.-] D Shew_2407 Peptidase S49, N-terminal domain protein K04774 sohB; serine protease SohB [EC:3.4.21.-] D Shew_1665 peptidase S51, dipeptidase E K05995 pepE; dipeptidase E [EC:3.4.13.21] D Shew_3712 Rhomboid family protein K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105] D Shew_0375 HslV component of HslUV peptidase. Threonine peptidase. MEROPS family T01B K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D Shew_2171 peptidase T2, asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D Shew_2158 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Shew_2783 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-] D Shew_0818 peptidase U32 K24847 rlhA; 23S rRNA 5-hydroxycytidine C2501 synthase D Shew_2788 peptidase U32 K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV D Shew_2787 peptidase U32 K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU D Shew_0416 peptidase U62, modulator of DNA gyrase K03592 pmbA; PmbA protein D Shew_0410 peptidase U62, modulator of DNA gyrase K03568 tldD; TldD protein D Shew_2044 proteinase inhibitor I11, ecotin K08276 eco; ecotin D Shew_0569 HflC protein K04087 hflC; modulator of FtsH protease HflC D Shew_0568 HflK protein K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:slo01003] D Shew_1172 Starch synthase K00703 glgA; starch synthase [EC:2.4.1.21] D Shew_3123 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D Shew_0207 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Shew_1416 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Shew_1417 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01005 Lipopolysaccharide biosynthesis proteins [BR:slo01005] D Shew_2623 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D Shew_2622 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D Shew_3448 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D Shew_2625 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D Shew_2513 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D Shew_1639 lipid-A-disaccharide synthase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D Shew_0658 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Shew_2213 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243] D Shew_3707 Three-deoxy-D-manno-octulosonic-acid transferase domain protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Shew_3020 hypothetical protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-] D Shew_2041 protein of unknown function DUF1705 K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D Shew_3706 lipopolysaccharide kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166] D Shew_1858 DegT/DnrJ/EryC1/StrS aminotransferase K19715 kdnA; 8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase [EC:2.6.1.109] D Shew_1857 iron-containing alcohol dehydrogenase K19714 kdnB; 3-deoxy-alpha-D-manno-octulosonate 8-oxidase [EC:1.1.3.48] D Shew_2904 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D Shew_1856 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Shew_3307 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D Shew_3306 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D Shew_3702 glycosyl transferase, family 9 K12982 opsX; heptosyltransferase I [EC:2.4.-.-] D Shew_2357 D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D Shew_0659 D-beta-D-heptose 1-phosphate adenylyltransferase / D-alpha,beta-D-heptose 7-phosphate 1-kinase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D Shew_3694 ADP-glyceromanno-heptose 6-epimerase precursor K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D Shew_1416 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Shew_1417 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:slo01011] D Shew_3298 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Shew_0141 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Shew_3452 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Shew_3455 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Shew_3458 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Shew_2133 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Shew_3277 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Shew_0139 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Shew_3456 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Shew_3453 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Shew_1004 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Shew_3368 phosphoesterase, PA-phosphatase related K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D Shew_1097 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D Shew_0207 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Shew_3123 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D Shew_2935 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Shew_3459 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Shew_2939 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Shew_1962 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D Shew_1006 ErfK/YbiS/YcfS/YnhG family protein K19235 ybiS; L,D-transpeptidase YbiS D Shew_1828 Peptidoglycan-binding domain 1 protein K21470 ycbB; L,D-transpeptidase YcbB D Shew_2455 peptidase M23B K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-] D Shew_1794 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70] D Shew_2125 Lytic transglycosylase, catalytic K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Shew_2937 lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D Shew_2141 lytic murein transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D Shew_2182 putative transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D Shew_2115 Lytic transglycosylase, catalytic K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D Shew_1300 Lytic transglycosylase, catalytic K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29] D Shew_1578 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D Shew_2938 rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Shew_0563 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Shew_3434 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28] D Shew_1007 major outer membrane lipoprotein, putative K06078 lpp; murein lipoprotein C 01004 Lipid biosynthesis proteins [BR:slo01004] D Shew_1602 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Shew_1601 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Shew_1333 3-oxoacyl-(acyl-carrier-protein) synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Shew_1334 3-oxoacyl-(acyl-carrier-protein) synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Shew_2366 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Shew_3523 beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Shew_2410 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Shew_3526 beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Shew_1605 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Shew_1603 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shew_1322 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shew_1673 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shew_3525 3-oxoacyl-(acyl-carrier-protein) reductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shew_1817 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D Shew_2624 3-hydroxyacyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Shew_2503 short-chain alcohol dehydrogenase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D Shew_2403 Arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D Shew_2989 lipolytic enzyme, G-D-S-L family K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D Shew_2556 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D Shew_0136 Delta-9 acyl-phospholipid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D Shew_1533 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Shew_2568 AMP-dependent synthetase and ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D Shew_3084 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_2610 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_3776 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_2188 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_2866 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_3502 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_2593 AMP-dependent synthetase and ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D Shew_3530 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D Shew_1600 phosphate:acyl-[acyl carrier protein] acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Shew_1001 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Shew_0450 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:slo01008] D Shew_1646 beta-lactamase domain protein K05555 actIV; cyclase [EC:4.-.-.-] C 01006 Prenyltransferases [BR:slo01006] D Shew_2770 farnesyl-diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D Shew_0868 Trans-hexaprenyltranstransferase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D Shew_2631 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Shew_0565 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Shew_2558 1,4-Dihydroxy-2-naphtoate prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D Shew_3384 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D Shew_0117 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Shew_0370 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:slo01007] D Shew_1449 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Shew_2516 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Shew_3130 Glutamate--tRNA ligase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D Shew_1022 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Shew_0221 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Shew_2511 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Shew_0378 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Shew_1573 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Shew_1099 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Shew_0923 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Shew_2929 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Shew_0812 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Shew_2079 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Shew_1900 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Shew_1291 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Shew_0010 Glycine--tRNA ligase K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Shew_0009 Glycine--tRNA ligase K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Shew_2020 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Shew_2596 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Shew_2032 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Shew_1217 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Shew_2216 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Shew_2215 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Shew_1951 aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Shew_1914 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D Shew_1999 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Shew_2199 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Shew_3709 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D Shew_1720 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D Shew_0966 aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D Shew_0578 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Shew_3172 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Shew_1718 aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D Shew_1012 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D Shew_0278 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Shew_0291 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Shew_0294 alanine-glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Shew_1950 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:slo00194] D Shew_3844 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Shew_3845 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Shew_3846 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Shew_3847 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Shew_3848 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D Shew_3849 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Shew_3850 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Shew_3851 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Shew_3852 ATP synthase I chain K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:slo03000] D Shew_2295 transcriptional regulator, AraC family K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein D Shew_0371 transcriptional regulator, AraC family K13652 K13652; AraC family transcriptional regulator D Shew_1452 DNA-3-methyladenine glycosylase II / DNA-O6-methylguanine--protein-cysteine S-methyltransferase / Transcriptional regulator Ada K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D Shew_2764 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Shew_0222 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Shew_2465 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Shew_2670 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Shew_0287 transcriptional regulator, LysR family K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D Shew_2987 transcriptional regulator, LysR family K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D Shew_1044 transcriptional regulator, LysR family K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D Shew_1035 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D Shew_1844 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D Shew_1624 transcriptional regulator, LysR family K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D Shew_3007 transcriptional regulator, LysR family K18927 lldR; LysR family transcriptional regulator, L-lactate utilization regulator D Shew_3174 transcriptional regulator, LysR family K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon D Shew_1245 transcriptional regulator, LysR family K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D Shew_2897 transcriptional regulator, LysR family K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator D Shew_1111 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Shew_3758 transcriptional regulator, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D Shew_2174 transcriptional regulator, GntR family K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D Shew_3432 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Shew_3176 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Shew_3484 cell division inhibitor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D Shew_0299 transcriptional regulator K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness D Shew_2729 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D Shew_1544 transcriptional regulator, TetR family K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D Shew_1313 transcriptional regulator, TetR family K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D Shew_0137 transcriptional regulator, TetR family K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D Shew_0782 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D Shew_2025 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Shew_0301 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Shew_3558 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Shew_3598 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Shew_0653 transcriptional regulator, LuxR family K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation D Shew_1782 transcriptional regulator, MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D Shew_0799 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D Shew_2562 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D Shew_3411 transcriptional regulator, MerR family K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D Shew_3819 transcriptional regulator, MerR family K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D Shew_1661 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Shew_0585 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Shew_1993 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D Shew_3233 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D Shew_3331 transcriptional regulator, Crp/Fnr family K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator D Shew_2318 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D Shew_3810 transcriptional regulator, BadM/Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D Shew_0417 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Shew_1095 transcriptional regulator, ArsR family K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator D Shew_0024 transcriptional regulator, ArsR family K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator D Shew_2049 transcriptional regulator, RpiR family K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D Shew_2994 transcriptional repressor, CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D Shew_0142 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Shew_0329 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D Shew_1076 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D Shew_1362 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D Shew_3573 GAF modulated sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D Shew_3082 DNA-binding protein Fis / transcriptional regulator, Fis family K12146 hyfR; hydrogenase-4 transcriptional activator D Shew_0656 transcriptional regulator, NifA subfamily, Fis family K12266 norR; anaerobic nitric oxide reductase transcription regulator D Shew_2528 transcriptional regulator, CdaR family K02647 cdaR; carbohydrate diacid regulator D Shew_3627 transcriptional regulator, XRE family K07729 K07729; putative transcriptional regulator D Shew_0519 methionine repressor, MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D Shew_0615 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Shew_3399 FMN-binding domain protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator D Shew_2883 transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D Shew_3853 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Shew_1398 transcription antitermination protein nusG K05785 rfaH; transcriptional antiterminator RfaH D Shew_0866 transcriptional regulator, ArgR family K03402 argR; transcriptional regulator of arginine metabolism D Shew_1437 transcriptional regulator, TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D Shew_1847 amino acid-binding ACT domain protein K03567 gcvR; glycine cleavage system transcriptional repressor D Shew_2497 sigma54 specific transcriptional regulator, Fis family K03974 pspF; psp operon transcriptional activator D Shew_2494 phage shock protein C, PspC K03973 pspC; phage shock protein C D Shew_0421 phage shock protein C, PspC K03973 pspC; phage shock protein C D Shew_1258 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein D Shew_1259 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein D Shew_1144 protein of unknown function DUF179 K07735 algH; putative transcriptional regulator D Shew_3129 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Shew_1186 ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR D Shew_3462 MraZ protein K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:slo03021] D Shew_0183 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Shew_0151 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Shew_0152 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Shew_3498 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Shew_0996 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor D Shew_1213 RNA polymerase, sigma 70 subunit, RpoD family K03087 rpoS; RNA polymerase nonessential primary-like sigma factor D Shew_1231 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Shew_1476 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Shew_2433 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Shew_2956 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Shew_1048 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Shew_3603 RNA polymerase, sigma 32 subunit, RpoH K03089 rpoH; RNA polymerase sigma-32 factor D Shew_3311 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Shew_1383 RNA polymerase, sigma 28 subunit, FliA/WhiG family K02405 fliA; RNA polymerase sigma factor FliA D Shew_0457 SNF2-related protein K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-] D Shew_2828 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA D Shew_1191 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB D Shew_0146 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG D Shew_0573 Glutathione S-transferase, N-terminal domain K03599 sspA; stringent starvation protein A D Shew_0574 Stringent starvation protein B K03600 sspB; stringent starvation protein B D Shew_1049 anti sigma-E protein, RseA K03597 rseA; sigma-E factor negative regulatory protein RseA D Shew_1050 sigma E regulatory protein, MucB/RseB K03598 rseB; sigma-E factor negative regulatory protein RseB D Shew_1051 positive regulator of sigma(E), RseC/MucC K03803 rseC; sigma-E factor negative regulatory protein RseC D Shew_3129 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Shew_2837 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D Shew_3636 transcription elongation factor GreB K04760 greB; transcription elongation factor GreB D Shew_0337 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Shew_0268 transcriptional antiterminator, Rof K19000 rof; Rho-binding antiterminator C 03019 Messenger RNA biogenesis [BR:slo03019] D Shew_1593 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12] D Shew_0407 RNAse G K08301 rng; ribonuclease G [EC:3.1.26.-] D Shew_1054 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Shew_3289 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Shew_0559 Exonuclease, RNase T and DNA polymerase III K13288 orn; oligoribonuclease [EC:3.1.-.-] D Shew_0339 DEAD/DEAH box helicase domain protein K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D Shew_0604 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Shew_2777 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Shew_2800 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Shew_1884 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Shew_0950 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Shew_1454 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Shew_0531 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Shew_3474 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Shew_1205 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Shew_2822 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Shew_0337 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Shew_2844 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Shew_0472 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Shew_0566 RNA-binding protein Hfq K03666 hfq; host factor-I protein D Shew_3079 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D Shew_3131 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D Shew_1038 NUDIX hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D Shew_1218 carbon storage regulator, CsrA K03563 csrA; carbon storage regulator D Shew_0384 diguanylate cyclase/phosphodiesterase K18765 csrD; RNase E specificity factor CsrD D Shew_3370 protein of unknown function 1935 K02553 rraA; regulator of ribonuclease activity A D Shew_2117 regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A D Shew_0451 protein of unknown function DUF1260 K09893 rraB; regulator of ribonuclease activity B D Shew_3314 uncharacterized P-loop ATPase protein UPF0042 K06958 rapZ; RNase adapter protein RapZ D Shew_1767 ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] D Shew_3124 ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:slo03011] D Shew_1954 SSU ribosomal protein S1P K02945 RP-S1; small subunit ribosomal protein S1 D Shew_2635 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2 D Shew_0164 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3 D Shew_0182 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4 D Shew_0175 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5 D Shew_3284 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6 D Shew_0154 SSU ribosomal protein S7P K02992 RP-S7; small subunit ribosomal protein S7 D Shew_0172 SSU ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8 D Shew_3293 SSU ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9 D Shew_0157 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10 D Shew_0181 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11 D Shew_0153 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12 D Shew_0180 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13 D Shew_0171 SSU ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14 D Shew_2824 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15 D Shew_1063 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16 D Shew_0167 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17 D Shew_3282 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18 D Shew_0162 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19 D Shew_1096 SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20 D Shew_0999 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21 D Shew_0148 LSU ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1 D Shew_0161 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2 D Shew_0158 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3 D Shew_0159 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4 D Shew_0170 LSU ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5 D Shew_0173 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6 D Shew_3281 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9 D Shew_0149 LSU ribosomal protein L10P K02864 RP-L10; large subunit ribosomal protein L10 D Shew_0147 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11 D Shew_0150 LSU ribosomal protein L12P / LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12 D Shew_3294 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13 D Shew_0168 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14 D Shew_0177 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15 D Shew_0165 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16 D Shew_0184 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17 D Shew_0174 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18 D Shew_1066 LSU ribosomal protein L19P K02884 RP-L19; large subunit ribosomal protein L19 D Shew_2029 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20 D Shew_0869 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21 D Shew_0163 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22 D Shew_0160 LSU ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23 D Shew_0169 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24 D Shew_0870 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27 D Shew_3480 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28 D Shew_0166 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29 D Shew_0176 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30 D Shew_0381 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31 D Shew_1599 LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32 D Shew_3479 LSU ribosomal protein L33P K02913 RP-L33; large subunit ribosomal protein L33 D Shew_3869 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34 D Shew_2030 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35 D Shew_0179 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36 D Shew_1830 LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25 D Shew_R0005 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shew_R0011 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shew_R0081 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shew_R0112 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shew_R0109 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shew_R0123 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shew_R0120 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shew_R0102 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shew_R0114 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shew_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shew_R0125 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shew_R0009 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shew_R0085 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shew_R0118 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shew_R0111 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shew_R0122 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shew_R0104 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shew_R0004 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shew_R0110 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shew_R0115 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shew_R0124 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shew_R0121 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shew_R0082 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shew_R0103 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shew_R0010 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:slo03009] D Shew_1054 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Shew_0559 Exonuclease, RNase T and DNA polymerase III K13288 orn; oligoribonuclease [EC:3.1.-.-] D Shew_1055 GTP-binding protein Era K03595 era; GTPase D Shew_0871 GTP1/OBG sub domain protein K03979 obgE; GTPase [EC:3.6.5.-] D Shew_3129 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Shew_2828 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA D Shew_1191 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB D Shew_0146 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG D Shew_0916 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D Shew_2975 ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D Shew_3180 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D Shew_0879 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D Shew_2739 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Shew_3738 sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Shew_1891 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Shew_3230 16S rRNA m(2)G 1207 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D Shew_3607 putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D Shew_3224 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D Shew_1583 putative RNA methylase, NOL1/NOP2/sun family K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178] D Shew_3855 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Shew_3461 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D Shew_0228 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D Shew_3647 protein of unknown function DUF548 K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] D Shew_1005 rRNA (guanine-N(1)-)-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D Shew_1613 rRNA (guanine-N(1)-)-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D Shew_3288 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D Shew_2835 ribosomal RNA methyltransferase RrmJ/FtsJ K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D Shew_3741 protein of unknown function DUF890 K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181] D Shew_2886 rRNA (guanine-N(2)-)-methyltransferase K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174] D Shew_2934 protein of unknown function DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D Shew_2397 conserved hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Shew_3324 conserved hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Shew_3648 protein of unknown function DUF519 K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D Shew_1812 putative RNA methylase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D Shew_2761 conserved hypothetical protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D Shew_1287 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D Shew_1201 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D Shew_0801 23S rRNA (uracil-5-)-methyltransferase RumB K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189] D Shew_2529 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shew_0783 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shew_1460 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shew_0099 pseudouridine synthase Rlu family protein, TIGR01621 K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shew_2547 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shew_3348 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shew_2246 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D Shew_1594 ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D Shew_2950 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Shew_0814 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D Shew_1562 ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D Shew_2943 SSU ribosomal protein S18P alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D Shew_0248 GCN5-related N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] D Shew_3664 SSU ribosomal protein S6P modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] D Shew_3037 alpha-L-glutamate ligases, RimK family K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] D Shew_1064 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D Shew_3033 uncharacterized domain protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor D Shew_0331 LSU ribosomal protein L11P methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D Shew_2417 modification methylase, HemK family K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] D Shew_1557 Cupin 4 family protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] D Shew_1593 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12] D Shew_0407 RNAse G K08301 rng; ribonuclease G [EC:3.1.26.-] D Shew_1143 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D Shew_0598 DEAD/DEAH box helicase domain protein K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] D Shew_0531 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Shew_0767 DEAD/DEAH box helicase domain protein K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7] D Shew_0558 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Shew_1294 small GTP-binding protein K03977 engA; GTPase D Shew_1589 GTP-binding protein, HSR1-related K14540 rbgA; ribosome biogenesis GTPase A D Shew_0567 GTP-binding protein, HSR1-related K03665 hflX; GTPase D Shew_3730 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Shew_3499 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Shew_2826 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D Shew_2829 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP D Shew_2468 RNA-binding S4 domain protein K14761 rlbA; ribosome-associated protein D Shew_2933 iojap-like protein K09710 ybeB; ribosome-associated protein D Shew_2925 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor D Shew_2836 protein of unknown function UPF0044 K07574 yhbY; RNA-binding protein D Shew_2447 conserved hypothetical protein K14762 yibL; ribosome-associated protein D Shew_0415 protein of unknown function DUF615 K09889 yjgA; ribosome-associated protein D Shew_1816 ribosome modulation factor K03812 rmf; ribosome modulation factor D Shew_3312 sigma 54 modulation protein / SSU ribosomal protein S30P K05808 hpf; ribosome hibernation promoting factor D Shew_1073 sigma 54 modulation protein / SSU ribosomal protein S30P K05809 raiA; ribosome-associated inhibitor A D Shew_1241 sigma 54 modulation protein/ribosomal protein S30EA K05809 raiA; ribosome-associated inhibitor A D Shew_2919 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase D Shew_1598 protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:slo03016] D Shew_1008 metal dependent phosphohydrolase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D Shew_1449 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Shew_2596 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Shew_1099 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Shew_2929 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Shew_1573 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Shew_2516 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Shew_0378 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Shew_0812 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Shew_2079 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Shew_1217 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Shew_1900 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Shew_2032 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Shew_2020 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Shew_2511 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Shew_0923 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Shew_1291 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Shew_2216 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Shew_2215 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Shew_1022 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Shew_0221 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Shew_3542 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D Shew_1731 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Shew_1124 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D Shew_2589 protein of unknown function UPF0066 K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D Shew_2306 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D Shew_2825 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D Shew_1209 Pseudouridylate synthase K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D Shew_2317 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Shew_3354 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Shew_3730 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Shew_0565 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Shew_3865 tRNA modification GTPase trmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D Shew_3856 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Shew_0135 selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D Shew_1427 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D Shew_0130 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D Shew_3868 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D Shew_R0013 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA D Shew_1520 RNAse T K03683 rnt; ribonuclease T [EC:3.1.13.-] D Shew_3488 RNAse PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D Shew_2187 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D Shew_3126 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D Shew_1183 ABC transporter-related protein K06020 ettA; energy-dependent translational throttle protein EttA D Shew_0010 Glycine--tRNA ligase K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Shew_0009 Glycine--tRNA ligase K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Shew_3130 Glutamate--tRNA ligase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D Shew_0016 ybaK/ebsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D Shew_0707 YbaK/prolyl-tRNA synthetase associated region K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-] D Shew_1299 tRNA-adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D Shew_0536 TIM-barrel protein, yjbN family K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D Shew_0330 putative TIM-barrel protein, nifR3 family K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D Shew_2242 dihydrouridine synthase, DuS K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-] D Shew_2923 tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D Shew_2081 putative methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D Shew_2082 putative methyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-] D Shew_0440 Methyltransferase type 12 K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-] D Shew_0138 tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35] D Shew_1065 tRNA (Guanine37-N(1)-) methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D Shew_3501 tRNA guanosine-2'-O-methyltransferase K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34] D Shew_2320 RNA methyltransferase, TrmH family, group 1 K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200] D Shew_2722 conserved hypothetical protein K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217] D Shew_3577 RNA methyltransferase, TrmH family, group 2 K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D Shew_0768 methyltransferase small K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223] D Shew_2643 tRNA pseudouridine synthase C K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26] D Shew_2529 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shew_0783 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shew_1460 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shew_0099 pseudouridine synthase Rlu family protein, TIGR01621 K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shew_2547 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shew_3348 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shew_1560 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Shew_1995 PP-loop domain protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D Shew_0015 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D Shew_1842 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D Shew_2017 DsrH like protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B D Shew_2016 DsrE family protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C D Shew_2015 DsrE family protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D Shew_2018 DsrC family protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D Shew_2315 iron-sulfur cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein D Shew_3198 glycine cleavage T protein (aminomethyl transferase) K06980 ygfZ; tRNA-modifying protein YgfZ D Shew_2514 tRNA--hydroxylase K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69] D Shew_2411 FAD dependent oxidoreductase K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] D Shew_2338 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D Shew_2062 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D Shew_2061 Radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D Shew_2654 GTP cyclohydrolase I K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D Shew_2979 putative iron-sulfur cluster binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D Shew_0134 tRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3] D Shew_2337 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D Shew_2766 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D Shew_2619 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D Shew_2193 peptidase M22, glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D Shew_1000 O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D Shew_0562 protein of unknown function UPF0079 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D Shew_3251 UBA/THIF-type NAD/FAD binding protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D Shew_3289 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Shew_2822 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:slo03012] D Shew_1145 translation initiation factor 1 (eIF-1/SUI1) K03113 EIF1; translation initiation factor 1 D Shew_2827 bacterial translation initiation factor 2 (bIF-2) K02519 infB; translation initiation factor IF-2 D Shew_2031 bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3 D Shew_0593 ABC transporter-related protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D Shew_2634 translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts D Shew_0144 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D Shew_0156 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D Shew_2663 small GTP-binding protein K02355 fusA; elongation factor G D Shew_1872 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G D Shew_0155 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G D Shew_2912 bacterial peptide chain release factor 1 (bRF-1) K02835 prfA; peptide chain release factor 1 D Shew_2632 ribosome recycling factor K02838 frr; ribosome recycling factor D Shew_2911 modification methylase, HemK family K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D Shew_2920 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D Shew_1567 bacterial translation initiation factor 1 (bIF-1) K02518 infA; translation initiation factor IF-1 D Shew_1915 translation elongation factor P (EF-P) K02356 efp; elongation factor P D Shew_0811 bacterial peptide chain release factor 2 (bRF-2) K02836 prfB; peptide chain release factor 2 D Shew_2820 bacterial peptide chain release factor 3 (bRF-3) K02837 prfC; peptide chain release factor 3 D Shew_0695 protein of unknown function DUF331 K09890 arfA; alternative ribosome-rescue factor D Shew_3362 Class I peptide chain release factor K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:slo03110] D Shew_1566 ATP-dependent Clp protease, ATP-binding subunit clpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D Shew_2948 ATPase AAA-2 domain protein K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D Shew_2507 ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D Shew_0374 heat shock protein HslVU, ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D Shew_2232 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG D Shew_2844 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Shew_2313 Fe-S protein assembly chaperone HscA K04044 hscA; molecular chaperone HscA D Shew_1787 conserved hypothetical protein K04046 yegD; hypothetical chaperone protein D Shew_0472 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Shew_2843 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Shew_0885 heat shock protein DnaJ domain protein K05801 djlA; DnaJ like chaperone protein D Shew_2314 co-chaperone Hsc20 K04082 hscB; molecular chaperone HscB D Shew_3622 Hsp33 protein K04083 hslO; molecular chaperone Hsp33 D Shew_2772 GrpE protein K03687 GRPE; molecular chaperone GrpE D Shew_0296 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein D Shew_2134 heat shock protein Hsp20 K04080 ibpA; molecular chaperone IbpA D Shew_3621 RNA-binding S4 domain protein K04762 hslR; ribosome-associated heat shock protein Hsp15 D Shew_0471 chaperonin Cpn10 K04078 groES; chaperonin GroES D Shew_2834 membrane protease FtsH catalytic subunit K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Shew_3851 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Shew_3804 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB D Shew_3569 protein of unknown function, Spy-related K06006 cpxP; periplasmic protein CpxP/Spy D Shew_0541 protein of unknown function DUF461 K09796 pccA; periplasmic copper chaperone A D Shew_3332 protein of unknown function DUF461 K09796 pccA; periplasmic copper chaperone A D Shew_1755 hydrogenase expression/synthesis, HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF D Shew_1759 hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB D Shew_2799 cytoplasmic chaperone TorD family protein K03533 torD; TorA specific chaperone D Shew_0240 cytoplasmic chaperone TorD family protein K23349 dmsD; putative dimethyl sulfoxide reductase chaperone D Shew_2443 peptidase S8 and S53, subtilisin, kexin, sedolisin K14645 K14645; serine protease [EC:3.4.21.-] D Shew_2209 peptidase S8 and S53, subtilisin, kexin, sedolisin K14645 K14645; serine protease [EC:3.4.21.-] D Shew_3021 Endonuclease I K14645 K14645; serine protease [EC:3.4.21.-] D Shew_0781 peptidase S8 and S53, subtilisin, kexin, sedolisin K14647 vpr; minor extracellular serine protease Vpr [EC:3.4.21.-] D Shew_1115 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D Shew_2890 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Shew_0827 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Shew_2512 Peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D Shew_2504 PpiC-type peptidyl-prolyl cis-trans isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D Shew_0840 peptidylprolyl isomerase, FKBP-type K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] D Shew_0350 peptidylprolyl isomerase, FKBP-type K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] D Shew_2841 peptidylprolyl isomerase, FKBP-type K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D Shew_1101 peptidylprolyl isomerase, FKBP-type K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8] D Shew_2139 peptidylprolyl isomerase, FKBP-type K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D Shew_1078 peptidylprolyl isomerase, FKBP-type K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D Shew_3008 PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D Shew_2470 PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D Shew_0881 PpiC-type peptidyl-prolyl cis-trans isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D Shew_0338 thioredoxin K03671 TXN; thioredoxin D Shew_0503 thioredoxin domain protein K03671 TXN; thioredoxin D Shew_2231 thioredoxin domain protein K05838 ybbN; putative thioredoxin D Shew_1531 Glutaredoxin, GrxA family K03674 grxA; glutaredoxin 1 D Shew_1835 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin D Shew_2373 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D Shew_0265 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D Shew_2176 Disulphide bond formation protein DsbB K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9] D Shew_0771 thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D Shew_3266 Protein-disulfide reductase K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16] D Shew_0194 periplasmic protein thiol--disulphide oxidoreductase DsbE K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE C 04131 Membrane trafficking [BR:slo04131] D Shew_2310 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Shew_3189 protein of unknown function UPF0016 K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D Shew_2000 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Shew_2002 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Shew_2050 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Shew_2232 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system [BR:slo04121] C 03051 Proteasome [BR:slo03051] D Shew_2232 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:slo03032] D Shew_2112 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Shew_1682 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Shew_2505 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Shew_0430 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Shew_2214 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D Shew_1955 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D Shew_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Shew_3278 primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Shew_0997 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D Shew_0535 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Shew_2620 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Shew_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Shew_0924 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Shew_2931 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Shew_1580 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Shew_1871 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shew_0050 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shew_2111 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shew_2368 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shew_2235 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Shew_2621 RNase HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Shew_3714 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Shew_2377 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Shew_0216 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Shew_1921 SeqA family protein K03645 seqA; negative modulator of initiation of replication D Shew_1838 regulatory inactivation of DnaA Hda protein K10763 hda; DnaA-homolog protein D Shew_1949 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Shew_0004 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Shew_0551 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Shew_0549 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Shew_2224 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Shew_2299 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:slo03036] D Shew_1054 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Shew_2585 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS D Shew_2505 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Shew_0430 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Shew_2214 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D Shew_1955 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D Shew_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Shew_0225 phosphoheptose isomerase K12961 diaA; DnaA initiator-associating protein D Shew_0329 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D Shew_0566 RNA-binding protein Hfq K03666 hfq; host factor-I protein D Shew_1844 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D Shew_2025 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Shew_0301 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Shew_3558 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Shew_3598 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Shew_1472 37 kDa nucleoid-associated protein K06899 ndpA; nucleoid-associated protein D Shew_2379 chromosome segregation protein SMC K03529 smc; chromosome segregation protein D Shew_2248 condensin subunit ScpA K05896 scpA; segregation and condensation protein A D Shew_2247 condensin subunit ScpB K06024 scpB; segregation and condensation protein B D Shew_3450 cell division protein FtsA K03590 ftsA; cell division protein FtsA D Shew_1206 cell division protein FtsB K05589 ftsB; cell division protein FtsB D Shew_3605 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D Shew_3459 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Shew_2024 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D Shew_3460 cell division protein FtsL K03586 ftsL; cell division protein FtsL D Shew_0377 Sporulation domain protein K03591 ftsN; cell division protein FtsN D Shew_3451 Polypeptide-transport-associated domain protein, FtsQ-type K03589 ftsQ; cell division protein FtsQ D Shew_3454 cell division protein FtsW K03588 ftsW; cell division protein FtsW D Shew_3604 cell division protein FtsX K09811 ftsX; cell division transport system permease protein D Shew_3449 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Shew_2378 cell division protein ZipA K03528 zipA; cell division protein ZipA D Shew_3068 cell division protein ZapA K09888 zapA; cell division protein ZapA D Shew_0267 protein of unknown function DUF904 K09892 zapB; cell division protein ZapB D Shew_1811 protein of unknown function DUF1379 K18657 zapC; cell division protein ZapC D Shew_3442 protein of unknown function DUF1342 K18778 zapD; cell division protein ZapD D Shew_3295 AFG1-family ATPase K06916 zapE; cell division protein ZapE D Shew_0631 AFG1-family ATPase K06916 zapE; cell division protein ZapE D Shew_0563 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Shew_1163 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shew_0031 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shew_1851 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shew_1177 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shew_2184 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D Shew_2185 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D Shew_2186 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D Shew_0126 conserved hypothetical protein K13053 sulA; cell division inhibitor SulA D Shew_3484 cell division inhibitor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D Shew_1921 SeqA family protein K03645 seqA; negative modulator of initiation of replication D Shew_0403 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D Shew_2595 hypothetical protein K03569 mreB; rod shape-determining protein MreB and related proteins D Shew_0404 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D Shew_0405 Rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D Shew_2936 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D Shew_3854 chromosome segregation ATPase K03496 parA; chromosome partitioning protein D Shew_2325 conserved hypothetical protein K03496 parA; chromosome partitioning protein D Shew_1389 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein D Shew_1281 conserved hypothetical protein K03496 parA; chromosome partitioning protein D Shew_3853 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Shew_0551 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Shew_0549 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Shew_3856 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Shew_3855 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Shew_0325 tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC D Shew_0770 tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D Shew_1574 ATP-binding protein, Mrp/Nbp35 family K03593 mrp; ATP-binding protein involved in chromosome partitioning D Shew_3715 cell division checkpoint GTPase YihA K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:slo03400] D Shew_1453 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Shew_1479 Deoxyribodipyrimidine photo-lyase type I K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D Shew_3073 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D Shew_1123 A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D Shew_2072 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Shew_3444 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Shew_3483 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Shew_1452 DNA-3-methyladenine glycosylase II / DNA-O6-methylguanine--protein-cysteine S-methyltransferase / Transcriptional regulator Ada K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D Shew_0011 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D Shew_3690 Formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D Shew_2262 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Shew_1083 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D Shew_0772 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Shew_2377 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Shew_3714 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Shew_0533 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D Shew_2064 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D Shew_1825 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D Shew_1264 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Shew_3385 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Shew_0151 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Shew_0152 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Shew_0183 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Shew_3498 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Shew_1630 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Shew_1214 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Shew_0564 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Shew_1037 DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH D Shew_1611 Exodeoxyribonuclease I subunit C K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D Shew_1296 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Shew_2769 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Shew_2620 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Shew_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Shew_0924 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Shew_2931 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Shew_1580 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Shew_1871 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shew_0050 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shew_2111 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shew_2368 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shew_2235 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Shew_0535 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Shew_0216 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Shew_2130 exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D Shew_2129 exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D Shew_2131 exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D Shew_1215 recA protein K03553 recA; recombination protein RecA D Shew_2076 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D Shew_2075 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Shew_2077 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Shew_0379 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D Shew_3283 restart primosome assembly protein PriB K02686 priB; primosomal replication protein N D Shew_2485 primosomal replication protein N'', putative K04067 priC; primosomal replication protein N'' D Shew_2456 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 D Shew_2457 Exodeoxyribonuclease I subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D Shew_2807 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D Shew_0003 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D Shew_3507 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Shew_1142 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Shew_1056 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Shew_2233 recombination protein RecR K06187 recR; recombination protein RecR D Shew_1196 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Shew_2751 putative exonuclease, RdgC K03554 rdgC; recombination associated protein RdgC D Shew_1532 type III restriction enzyme, res subunit K19789 radD; DNA repair protein RadD D Shew_1949 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Shew_0004 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Shew_2224 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Shew_2505 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Shew_0430 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Shew_0329 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D Shew_2214 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D Shew_1955 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D Shew_3474 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Shew_2585 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS D Shew_2871 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D Shew_0127 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D Shew_2482 DNA damage-inducible DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D Shew_2101 hypothetical protein K14161 imuB; protein ImuB D Shew_2100 DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D Shew_1216 regulatory protein RecX K03565 recX; regulatory protein D Shew_0305 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D Shew_2196 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D Shew_2483 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D Shew_1946 ribonucleoside-diphosphate reductase class Ia alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Shew_1945 ribonucleoside-diphosphate reductase class Ia beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:slo03029] D Shew_0571 Cytochrome b/b6, N-terminal domain K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D Shew_2827 bacterial translation initiation factor 2 (bIF-2) K02519 infB; translation initiation factor IF-2 D Shew_2031 bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3 D Shew_2634 translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts D Shew_0144 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D Shew_0156 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D Shew_2663 small GTP-binding protein K02355 fusA; elongation factor G D Shew_1872 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G D Shew_0155 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G D Shew_1055 GTP-binding protein Era K03595 era; GTPase D Shew_1022 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Shew_2929 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Shew_2079 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Shew_0378 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Shew_0535 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Shew_2627 surface antigen (D15) K07277 SAM50; outer membrane protein insertion porin family D Shew_2844 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Shew_2772 GrpE protein K03687 GRPE; molecular chaperone GrpE D Shew_0472 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Shew_0471 chaperonin Cpn10 K04078 groES; chaperonin GroES D Shew_2843 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Shew_2317 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Shew_3354 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Shew_2314 co-chaperone Hsc20 K04082 hscB; molecular chaperone HscB D Shew_1835 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin D Shew_1574 ATP-binding protein, Mrp/Nbp35 family K03593 mrp; ATP-binding protein involved in chromosome partitioning D Shew_0117 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Shew_0370 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Shew_0123 cytochrome c oxidase assembly protein CtaG/Cox11 K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D Shew_0118 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D Shew_3866 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D Shew_0120 conserved hypothetical protein K14998 SURF1; surfeit locus 1 family protein D Shew_0116 electron transport protein SCO1/SenC K07152 SCO1; protein SCO1 D Shew_3333 electron transport protein SCO1/SenC K07152 SCO1; protein SCO1 D Shew_2232 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:slo02000] D Shew_1638 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D Shew_0853 ABC transporter-related protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D Shew_1451 ABC transporter-related protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D Shew_3087 lipid A ABC exporter family, fused ATPase and inner membrane subunits K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Shew_0312 ABC transporter-related protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D Shew_0512 ABC transporter-related protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D Shew_0513 ABC transporter-related protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D Shew_0614 ABC transporter, transmembrane region, type 1 K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D Shew_0613 ABC transporter, transmembrane region, type 1 K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D Shew_1814 ABC transporter-related protein K15738 uup; ABC transport system ATP-binding/permease protein D Shew_0092 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Shew_2687 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Shew_0093 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein D Shew_0094 ABC transporter-related protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D Shew_3683 extracellular solute-binding protein, family 1 K05772 tupA; tungstate transport system substrate-binding protein D Shew_3684 binding-protein-dependent transport systems inner membrane component K05773 tupB; tungstate transport system permease protein D Shew_3685 ABC transporter-related protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D Shew_0861 extracellular solute-binding protein, family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Shew_0862 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Shew_0863 ABC transporter-related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Shew_0973 extracellular solute-binding protein, family 1 K11073 potF; putrescine transport system substrate-binding protein D Shew_0976 binding-protein-dependent transport systems inner membrane component K11074 potI; putrescine transport system permease protein D Shew_0975 binding-protein-dependent transport systems inner membrane component K11075 potH; putrescine transport system permease protein D Shew_0974 spermidine/putrescine ABC transporter ATPase subunit K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D Shew_3789 ABC-type nitrate/sulfonate/bicarbonate transport system protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D Shew_3045 sugar-binding protein, putative K10439 rbsB; ribose transport system substrate-binding protein D Shew_0630 conserved hypothetical protein 245 K02069 STAR2; UDP-glucose/iron transport system permease protein D Shew_3302 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Shew_3303 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Shew_3304 ABC transporter-related protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Shew_3301 toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein D Shew_3300 anti-sigma-factor antagonist K07122 mlaB; phospholipid transport system transporter-binding protein D Shew_2747 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D Shew_1698 binding-protein-dependent transport systems inner membrane component K02037 pstC; phosphate transport system permease protein D Shew_1699 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein D Shew_1700 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Shew_2347 phosphonate ABC transporter, periplasmic phosphonate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein D Shew_2345 binding-protein-dependent transport systems inner membrane component K02042 phnE; phosphonate transport system permease protein D Shew_2346 ABC transporter-related protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D Shew_3166 extracellular solute-binding protein, family 3 K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein D Shew_3165 polar amino acid ABC transporter, inner membrane subunit K17077 artQ; arginine/lysine/histidine transport system permease protein D Shew_3164 ABC transporter-related protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D Shew_2607 putative branched-chain amino acid ABC transporter K01999 livK; branched-chain amino acid transport system substrate-binding protein D Shew_2609 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Shew_2608 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Shew_2611 ABC transporter-related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D Shew_2606 ABC transporter-related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D Shew_3070 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Shew_2779 conserved hypothetical amino acid ABC transporter K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Shew_2978 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Shew_0229 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Shew_0286 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Shew_2578 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Shew_1934 conserved hypothetical protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Shew_2149 conserved hypothetical ABC transporter protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Shew_0850 hypothetical protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Shew_0629 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Shew_1508 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Shew_1518 conserved hypothetical protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Shew_3678 conserved hypothetical protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Shew_2498 extracellular solute-binding protein, family 5 K19226 sapA; cationic peptide transport system substrate-binding protein D Shew_2499 binding-protein-dependent transport systems inner membrane component K19227 sapB; cationic peptide transport system permease protein D Shew_2500 binding-protein-dependent transport systems inner membrane component K19228 sapC; cationic peptide transport system permease protein D Shew_2501 oligopeptide/dipeptide ABC transporter, ATPase subunit K19229 sapD; cationic peptide transport system ATP-binding protein D Shew_2502 ABC transporter-related protein K19230 sapF; cationic peptide transport system ATP-binding protein D Shew_0713 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D Shew_0712 ABC transporter-related protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D Shew_0719 periplasmic binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein D Shew_3674 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein D Shew_3675 ABC transporter-related protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Shew_0448 periplasmic solute binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein D Shew_0449 ABC-3 protein K02075 ABC.ZM.P; zinc/manganese transport system permease protein D Shew_0940 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein D Shew_0941 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D Shew_3310 ABC transporter-related protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D Shew_3782 ABC-2 type transporter K09696 natB; sodium transport system permease protein D Shew_3781 ABC transporter-related protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D Shew_0357 copper ABC transporter, permease protein K19341 nosY; Cu-processing system permease protein D Shew_3403 ABC-2 type transporter K19341 nosY; Cu-processing system permease protein D Shew_0356 ABC transporter-related protein K19340 nosF; Cu-processing system ATP-binding protein D Shew_3402 ABC transporter-related protein K19340 nosF; Cu-processing system ATP-binding protein D Shew_1632 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein D Shew_1634 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein D Shew_1633 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D Shew_0187 Heme exporter protein D (CcmD) K02196 ccmD; heme exporter protein D D Shew_0188 heme exporter protein CcmC K02195 ccmC; heme exporter protein C D Shew_0189 heme exporter protein CcmB K02194 ccmB; heme exporter protein B D Shew_0190 heme exporter protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D Shew_3604 cell division protein FtsX K09811 ftsX; cell division transport system permease protein D Shew_3605 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D Shew_0413 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Shew_3140 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Shew_0414 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Shew_1616 conserved hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D Shew_0425 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Shew_3778 ABC transporter-related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Shew_3141 ABC transporter-related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Shew_1615 ABC transporter-related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Shew_0426 ABC transporter-related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Shew_0725 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Shew_0724 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Shew_3202 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Shew_2401 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Shew_2659 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Shew_0723 ABC transporter-related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Shew_2402 ABC transporter-related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Shew_3201 ABC transporter-related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Shew_2658 ABC transporter-related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Shew_2490 anion transporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5 D Shew_2037 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D Shew_1492 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Shew_0107 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Shew_0470 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Shew_2775 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Shew_1890 glucose/galactose transporter K02429 fucP; MFS transporter, FHS family, L-fucose permease D Shew_1119 glucose/galactose transporter K02429 fucP; MFS transporter, FHS family, L-fucose permease D Shew_2415 major facilitator superfamily MFS_1 K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter D Shew_0420 major facilitator superfamily MFS_1 K25223 arsJ; MFS transporter, APGE family, 1-arseno-3-phosphoglycerate exporter D Shew_2892 major facilitator superfamily MFS_1 K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D Shew_3588 drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D Shew_1777 drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D Shew_3405 drug resistance transporter, EmrB/QacA subfamily K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D Shew_1542 major facilitator superfamily MFS_1 K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D Shew_1441 major facilitator superfamily MFS_1 K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein D Shew_2681 General substrate transporter K08368 yaaU; MFS transporter, putative metabolite transport protein D Shew_1865 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D Shew_1039 PTSINtr with GAF domain, PtsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D Shew_1866 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D Shew_3315 Phosphotransferase system, phosphocarrier protein HPr K08485 ptsO; phosphocarrier protein NPr D Shew_1864 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Shew_2641 PTS system, glucose-like IIB subunint K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D Shew_3313 PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D Shew_1491 Ion transport protein K10716 kch; voltage-gated potassium channel D Shew_0620 ion transport 2 domain protein K10716 kch; voltage-gated potassium channel D Shew_0255 ion transport 2 domain protein K10716 kch; voltage-gated potassium channel D Shew_0847 Rh family protein/ammonium transporter K03320 amt; ammonium transporter, Amt family D Shew_2968 Glutathione S-transferase, N-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Shew_3211 Glutathione S-transferase, C-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Shew_0859 Glutathione S-transferase, N-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Shew_0027 Glutathione S-transferase, N-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Shew_1780 Glutathione S-transferase, N-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Shew_0573 Glutathione S-transferase, N-terminal domain K03599 sspA; stringent starvation protein A D Shew_2431 Tetratricopeptide TPR_2 repeat protein K07114 yfbK; Ca-activated chloride channel homolog D Shew_2430 von Willebrand factor, type A K07114 yfbK; Ca-activated chloride channel homolog D Shew_1793 Vault protein inter-alpha-trypsin domain protein K07114 yfbK; Ca-activated chloride channel homolog D Shew_2014 protein of unknown function UPF0005 K19416 yccA; modulator of FtsH protease D Shew_2388 formate/nitrite transporter K06212 focA; formate transporter D Shew_0555 MscS Mechanosensitive ion channel K22051 mscM; miniconductance mechanosensitive channel D Shew_0444 MscS Mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel D Shew_1152 MscS Mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel D Shew_3394 MscS Mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel D Shew_2145 MscS Mechanosensitive ion channel K16052 ynaI; MscS family membrane protein D Shew_3752 MscS Mechanosensitive ion channel K16053 ybdG; miniconductance mechanosensitive channel D Shew_3011 magnesium transporter K06213 mgtE; magnesium transporter D Shew_3316 magnesium transporter K06213 mgtE; magnesium transporter D Shew_2768 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Shew_2767 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Shew_3290 Sel1 domain protein repeat-containing protein K21217 motX; sodium-type polar flagellar protein MotX D Shew_1521 OmpA/MotB domain protein K21218 motY; sodium-type flagellar protein MotY D Shew_2476 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB D Shew_2477 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB D Shew_2475 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD D Shew_1524 MotA/TolQ/ExbB proton channel K03562 tolQ; biopolymer transport protein TolQ D Shew_1525 Biopolymer transport protein ExbD/TolR K03560 tolR; biopolymer transport protein TolR D Shew_0789 Mg2+ transporter protein, CorA family protein K03284 corA; magnesium transporter D Shew_2353 magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter D Shew_2021 camphor resistance protein CrcB K06199 crcB; fluoride exporter D Shew_1286 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Shew_1060 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Shew_0284 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Shew_2691 OmpA domain protein transmembrane region-containing protein K16079 omp31; outer membrane immunogenic protein D Shew_1090 OmpA/MotB domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D Shew_1151 OmpA/MotB domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D Shew_0309 OmpA/MotB domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D Shew_2436 membrane protein involved in aromatic hydrocarbon degradation K06076 fadL; long-chain fatty acid transport protein D Shew_3468 membrane protein involved in aromatic hydrocarbon degradation K06076 fadL; long-chain fatty acid transport protein D Shew_2816 nucleoside-specific channel-forming protein, Tsx K05517 tsx; nucleoside-specific channel-forming protein D Shew_3676 TonB-dependent receptor, plug K16092 btuB; vitamin B12 transporter D Shew_3097 TonB-dependent siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D Shew_2385 TonB-dependent receptor, plug K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shew_2480 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shew_2718 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shew_2990 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shew_3081 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shew_3241 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shew_3340 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shew_3841 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shew_1112 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shew_2870 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shew_1688 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shew_2967 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shew_1888 TonB-dependent receptor, plug K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shew_1735 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shew_2244 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shew_2074 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shew_2296 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shew_0341 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shew_3358 outer membrane efflux family protein, putative K15725 czcC; outer membrane protein, heavy metal efflux system D Shew_0544 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Shew_0310 type I secretion outer membrane protein, TolC family K12543 lapE; outer membrane protein, adhesin transport system D Shew_1399 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein D Shew_2627 surface antigen (D15) K07277 SAM50; outer membrane protein insertion porin family D Shew_1293 Pyrrolo-quinoline quinone K17713 bamB; outer membrane protein assembly factor BamB D Shew_1849 NlpBDapX family lipoprotein K07287 bamC; outer membrane protein assembly factor BamC D Shew_2951 putative lipoprotein K05807 bamD; outer membrane protein assembly factor BamD D Shew_1271 SmpA/OmlA domain protein K06186 bamE; outer membrane protein assembly factor BamE D Shew_2172 surface antigen (D15) K07278 tamA; translocation and assembly module TamA D Shew_2173 protein of unknown function DUF490 K09800 tamB; translocation and assembly module TamB D Shew_3309 OstA family protein K09774 lptA; lipopolysaccharide export system protein LptA D Shew_3308 protein of unknown function DUF1239 K11719 lptC; lipopolysaccharide export system protein LptC D Shew_0882 Organic solvent tolerance protein K04744 lptD; LPS-assembly protein D Shew_2930 Rare lipoprotein B K03643 lptE; LPS-assembly lipoprotein D Shew_2926 CBS domain containing protein K06189 corC; hemolysin (HlyC) family protein D Shew_0829 LrgA family protein K06518 cidA; holin-like protein D Shew_1874 major facilitator superfamily MFS_1 K16211 malY; maltose/moltooligosaccharide transporter D Shew_3597 amino acid permease-associated region K16263 yjeH; amino acid efflux transporter D Shew_3568 cation diffusion facilitator family transporter K13283 fieF; ferrous-iron efflux pump FieF D Shew_3356 heavy metal efflux pump, CzcA family K15726 czcA; heavy metal efflux system protein D Shew_3766 heavy metal efflux pump, CzcA family K15726 czcA; heavy metal efflux system protein D Shew_3534 heavy metal efflux pump, CzcA family K07787 cusA; copper/silver efflux system protein D Shew_1311 acriflavin resistance protein K18303 mexK; multidrug efflux pump D Shew_0032 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Shew_1852 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shew_1164 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Shew_3476 RarD protein, DMT superfamily transporter K05786 rarD; chloramphenicol-sensitive protein RarD D Shew_3322 RarD protein, DMT superfamily transporter K05786 rarD; chloramphenicol-sensitive protein RarD D Shew_2291 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D Shew_2290 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D Shew_1515 Na+/H+ antiporter NhaC K07084 yuiF; putative amino acid transporter D Shew_2533 Gluconate transporter K03299 TC.GNTP; gluconate:H+ symporter, GntP family D Shew_3135 L-lactate permease K03303 lutP; lactate permease D Shew_2676 choline/carnitine/betaine transporter K05245 caiT; L-carnitine/gamma-butyrobetaine antiporter D Shew_3305 Na+/Ca+ antiporter, CaCA family K07301 yrbG; cation:H+ antiporter D Shew_3503 Na+/Ca+ antiporter, CaCA family K07301 yrbG; cation:H+ antiporter D Shew_2435 sodium/proline symporter K11928 putP; sodium/proline symporter D Shew_2371 Na+/solute symporter K14393 actP; cation/acetate symporter D Shew_1458 sodium:dicarboxylate symporter K07862 sstT; serine/threonine transporter D Shew_0103 sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family D Shew_1042 Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family D Shew_2175 Na+/H+ antiporter NhaB K03314 nhaB; Na+:H+ antiporter, NhaB family D Shew_0344 Na+/H+ antiporter NhaC K03315 nhaC; Na+:H+ antiporter, NhaC family D Shew_2582 Na+/H+ antiporter NhaC K18218 tet35; tetracycline resistance efflux pump D Shew_3326 sodium/hydrogen exchanger K24160 NHA1; sodium/hydrogen antiporter D Shew_3170 sodium/hydrogen exchanger K11105 cvrA; potassium/hydrogen antiporter D Shew_2548 potassium efflux system protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB D Shew_2549 NAD(P)H dehydrogenase (quinone) K11748 kefG; glutathione-regulated potassium-efflux system ancillary protein KefG D Shew_2617 potassium efflux system protein K03455 KEA1_2_3; K+:H+ antiporter D Shew_3217 sodium/hydrogen exchanger K26730 napA; Na+:H+ antiporter D Shew_3740 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein D Shew_0022 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein D Shew_3739 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein D Shew_1836 uracil-xanthine permease K02824 uraA; uracil permease D Shew_2795 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease D Shew_2849 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease D Shew_3188 aromatic amino acid permease K03834 tyrP; tyrosine-specific transport protein D Shew_3531 aromatic amino acid transporter K03835 mtr; tryptophan-specific transport protein D Shew_0739 aromatic amino acid permease K03837 sdaC; serine transporter D Shew_1015 Cl-channel, voltage-gated family protein K03281 clcA; chloride channel protein, CIC family D Shew_0802 chromate transporter, chromate ion transporter (CHR) family K07240 chrA; chromate transporter D Shew_0497 sulphate transporter K03321 TC.SULP; sulfate permease, SulP family D Shew_1592 sulphate transporter K03321 TC.SULP; sulfate permease, SulP family D Shew_1446 TRAP dicarboxylate transporter, DctP subunit K11688 dctP; C4-dicarboxylate-binding protein DctP D Shew_1445 Tripartite ATP-independent periplasmic transporter, DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D Shew_1444 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Shew_0418 arsenical-resistance protein K03325 ACR3; arsenite transporter D Shew_1097 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D Shew_1197 Auxin Efflux Carrier K13936 mdcF; malonate transporter and related proteins D Shew_1845 Lysine exporter protein (LYSE/YGGA) K06895 lysE; L-lysine exporter family protein LysE/ArgO D Shew_2156 Lysine exporter protein (LYSE/YGGA) K05834 rhtB; homoserine/homoserine lactone efflux protein D Shew_3751 Lysine exporter protein (LYSE/YGGA) K05834 rhtB; homoserine/homoserine lactone efflux protein D Shew_1462 Lysine exporter protein (LYSE/YGGA) K05835 rhtC; threonine efflux protein D Shew_3076 Lysine exporter protein (LYSE/YGGA) K05835 rhtC; threonine efflux protein D Shew_2538 AzlC family protein K26605 azlC; branched chain amino acid efflux pump D Shew_2539 branched-chain amino acid transport K26606 azlD; branched chain amino acid efflux pump D Shew_1843 protein of unknown function UPF0118 K03548 perM; putative permease D Shew_3679 conserved hypothetical integral membrane protein K09125 yhhQ; queuosine precursor transporter D Shew_1911 multiple antibiotic resistance (MarC)-related protein K05595 marC; multiple antibiotic resistance protein D Shew_3454 cell division protein FtsW K03588 ftsW; cell division protein FtsW D Shew_3189 protein of unknown function UPF0016 K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D Shew_2474 TonB family protein K03832 tonB; periplasmic protein TonB D Shew_1528 OmpA domain protein K03640 pal; peptidoglycan-associated lipoprotein D Shew_1526 TolA family protein K03646 tolA; colicin import membrane protein D Shew_1527 TolB, N-terminal domain protein K03641 tolB; TolB protein D Shew_1221 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Shew_1220 oxaloacetate decarboxylase alpha subunit K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D Shew_1219 sodium pump decarboxylases, gamma subunit K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma D Shew_2798 trimethylamine-N-oxide reductase TorA K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3] D Shew_2797 trimethylamine-N-oxide reductase c-type cytochrome TorC K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC D Shew_2799 cytoplasmic chaperone TorD family protein K03533 torD; TorA specific chaperone D Shew_0608 molybdopterin oxidoreductase K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5] D Shew_0607 4Fe-4S ferredoxin, iron-sulfur binding domain protein K16293 psrB; polysulfide reductase chain B D Shew_0606 Polysulphide reductase, NrfD K16294 psrC; polysulfide reductase chain C D Shew_3243 molydopterin dinucleotide-binding region K08357 ttrA; tetrathionate reductase subunit A D Shew_3244 4Fe-4S ferredoxin, iron-sulfur binding domain protein K08358 ttrB; tetrathionate reductase subunit B D Shew_3406 secretion protein HlyD family protein K03543 emrA; membrane fusion protein, multidrug efflux system D Shew_1543 secretion protein HlyD family protein K03543 emrA; membrane fusion protein, multidrug efflux system D Shew_3357 efflux transporter, RND family, MFP subunit K15727 czcB; membrane fusion protein, heavy metal efflux system D Shew_3535 efflux transporter, RND family, MFP subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D Shew_0311 type I secretion membrane fusion protein, HlyD family K12542 lapC; membrane fusion protein, adhesin transport system D Shew_0511 type I secretion membrane fusion protein, HlyD family K12542 lapC; membrane fusion protein, adhesin transport system D Shew_1163 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shew_0031 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shew_1851 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shew_1177 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shew_1737 nicotinamide mononucleotide transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter D Shew_2518 FeoA family protein K04758 feoA; ferrous iron transport protein A D Shew_2517 ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D Shew_0193 cytochrome c-type biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF D Shew_0347 cytochrome c assembly protein K02198 ccmF; cytochrome c-type biogenesis protein CcmF D Shew_3628 MgtC/SapB transporter K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D Shew_2564 MltA-interacting MipA family protein K07274 mipA; MipA family protein D Shew_0898 MltA-interacting MipA family protein K07274 mipA; MipA family protein D Shew_0806 MltA-interacting MipA family protein K07274 mipA; MipA family protein C 02044 Secretion system [BR:slo02044] D Shew_0544 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Shew_0312 ABC transporter-related protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D Shew_0512 ABC transporter-related protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D Shew_0513 ABC transporter-related protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D Shew_0311 type I secretion membrane fusion protein, HlyD family K12542 lapC; membrane fusion protein, adhesin transport system D Shew_0511 type I secretion membrane fusion protein, HlyD family K12542 lapC; membrane fusion protein, adhesin transport system D Shew_0310 type I secretion outer membrane protein, TolC family K12543 lapE; outer membrane protein, adhesin transport system D Shew_1009 Peptidoglycan-binding domain 1 protein K02450 gspA; general secretion pathway protein A D Shew_1010 general secretion pathway protein B K02451 gspB; general secretion pathway protein B D Shew_3620 general secretion pathway protein C K02452 gspC; general secretion pathway protein C D Shew_3619 general secretion pathway protein D K02453 gspD; general secretion pathway protein D D Shew_3618 type II secretion system protein E (GspE) K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D Shew_3617 general secretion pathway protein F K02455 gspF; general secretion pathway protein F D Shew_3616 general secretion pathway protein G K02456 gspG; general secretion pathway protein G D Shew_3615 general secretion pathway protein H K02457 gspH; general secretion pathway protein H D Shew_3614 general secretion pathway protein I K02458 gspI; general secretion pathway protein I D Shew_3613 general secretion pathway protein J K02459 gspJ; general secretion pathway protein J D Shew_3612 General secretion pathway protein K K02460 gspK; general secretion pathway protein K D Shew_3611 general secretion pathway protein L K02461 gspL; general secretion pathway protein L D Shew_3610 General secretion pathway M protein K02462 gspM; general secretion pathway protein M D Shew_3609 type II secretion system protein N K02463 gspN; general secretion pathway protein N D Shew_3440 Prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Shew_3436 methylation site containing protein K02650 pilA; type IV pilus assembly protein PilA D Shew_3438 type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB D Shew_3439 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC D Shew_1107 methylation site containing protein K02655 pilE; type IV pilus assembly protein PilE D Shew_1288 type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF D Shew_0208 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM D Shew_0209 Fimbrial assembly family protein K02663 pilN; type IV pilus assembly protein PilN D Shew_0210 Pilus assembly protein, PilO K02664 pilO; type IV pilus assembly protein PilO D Shew_0211 Pilus assembly protein, PilQ K02665 pilP; type IV pilus assembly protein PilP D Shew_0212 type IV pilus secretin PilQ K02666 pilQ; type IV pilus assembly protein PilQ D Shew_1138 twitching motility protein K02669 pilT; twitching motility protein PilT D Shew_1139 twitching motility protein K02670 pilU; twitching motility protein PilU D Shew_1103 type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV D Shew_1104 prepilin-type cleavage/methylation-like protein K02672 pilW; type IV pilus assembly protein PilW D Shew_1105 type IV pilus assembly protein PilX K02673 pilX; type IV pilus assembly protein PilX D Shew_1106 type IV pilin biogenesis protein, putative K02674 pilY1; type IV pilus assembly protein PilY1 D Shew_1179 type IV pilin biogenesis protein, putative K02674 pilY1; type IV pilus assembly protein PilY1 D Shew_1581 type IV pilus assembly PilZ K02676 pilZ; type IV pilus assembly protein PilZ D Shew_1109 type IV pilus biogenesis protein, putative K08084 fimT; type IV fimbrial biogenesis protein FimT D Shew_1108 methylation site containing protein K08085 fimU; type IV fimbrial biogenesis protein FimU D Shew_2307 conserved hypothetical protein K08086 fimV; pilus assembly protein FimV D Shew_0646 SAF domain protein K02279 cpaB; pilus assembly protein CpaB D Shew_0645 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC D Shew_0644 FHA domain containing protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Shew_0643 type II secretion system protein K12510 tadB; tight adherence protein B D Shew_0642 type II secretion system protein K12511 tadC; tight adherence protein C D Shew_0396 methylation site containing protein K10924 mshA; MSHA pilin protein MshA D Shew_0397 methylation site containing protein K10924 mshA; MSHA pilin protein MshA D Shew_0364 MshA, mannose-sensitive haemaglutinin K10924 mshA; MSHA pilin protein MshA D Shew_0067 hypothetical protein K10924 mshA; MSHA pilin protein MshA D Shew_0395 methylation site containing protein K10925 mshB; MSHA pilin protein MshB D Shew_3074 pilin, putative K10925 mshB; MSHA pilin protein MshB D Shew_0398 MSHA pilin protein MshC K10926 mshC; MSHA pilin protein MshC D Shew_0399 methylation site containing protein K10927 mshD; MSHA pilin protein MshD D Shew_0392 type II secretion system protein E K12276 mshE; MSHA biogenesis protein MshE D Shew_0393 type II secretion system protein K12278 mshG; MSHA biogenesis protein MshG D Shew_0385 conserved hypothetical biogenesis protein MshI K12279 mshI; MSHA biogenesis protein MshI D Shew_0387 MSHA biogenesis protein MshJ K12280 mshJ; MSHA biogenesis protein MshJ D Shew_0388 MSHA biogenesis protein MshK K12281 mshK; MSHA biogenesis protein MshK D Shew_0389 pilus (MSHA type) biogenesis protein MshL K12282 mshL; MSHA biogenesis protein MshL D Shew_0390 MSHA biogenesis protein MshM K12283 mshM; MSHA biogenesis protein MshM D Shew_0391 Tetratricopeptide TPR_2 repeat protein K12284 mshN; MSHA biogenesis protein MshN D Shew_0400 methylation site containing protein K12285 mshO; MSHA biogenesis protein MshO D Shew_0401 MSHA biogenesis protein MshP K12286 mshP; MSHA biogenesis protein MshP D Shew_0402 MSHA biogenesis protein MshQ K12287 mshQ; MSHA biogenesis protein MshQ D Shew_1135 protein of unknown function YGGT K02221 yggT; YggT family protein D Shew_2489 competence protein ComEA helix-hairpin-helix repeat protein K02237 comEA; competence protein ComEA D Shew_3055 CMP/dCMP deaminase, zinc-binding K01493 comEB; dCMP deaminase [EC:3.5.4.12] D Shew_1637 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC D Shew_1380 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Shew_1379 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Shew_1393 FlhB domain protein K04061 flhB2; flagellar biosynthesis protein D Shew_1366 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Shew_1368 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D Shew_1369 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Shew_1374 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Shew_1375 flagellar biosynthesis protein, FliO K02418 fliO; flagellar protein FliO/FliZ D Shew_1376 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Shew_1377 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Shew_1378 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Shew_0771 thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D Shew_0197 protein of unknown function DUF796 K11903 hcp; type VI secretion system secreted protein Hcp D Shew_1725 Curlin associated repeat protein K04335 csgB; minor curlin subunit D Shew_1727 hypothetical protein K04337 csgE; curli production assembly/transport component CsgE D Shew_1728 curli production assembly/transport component CsgF precursor K04338 csgF; curli production assembly/transport component CsgF D Shew_1729 Curli production assembly/transport component CsgG K06214 csgG; curli production assembly/transport component CsgG D Shew_3445 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Shew_3804 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB D Shew_2335 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Shew_0145 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D Shew_2334 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF D Shew_2830 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG D Shew_0178 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D Shew_1062 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Shew_3606 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Shew_2336 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC D Shew_3866 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D Shew_3376 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Shew_3377 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB D Shew_3378 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:slo02042] D Shew_2530 C4-dicarboxylate transporter/malic acid transport protein K11041 eta; exfoliative toxin A/B D Shew_1286 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Shew_1060 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Shew_0284 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Shew_2098 channel protein, hemolysin III family K11068 hlyIII; hemolysin III D Shew_1685 Microbial collagenase K01387 colA; microbial collagenase [EC:3.4.24.3] D Shew_3732 Microbial collagenase K01387 colA; microbial collagenase [EC:3.4.24.3] C 02022 Two-component system [BR:slo02022] D Shew_2748 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Shew_2749 two component transcriptional regulator, winged helix family K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D Shew_2696 integral membrane sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shew_2349 integral membrane sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shew_2348 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Shew_2695 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Shew_3638 integral membrane sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D Shew_3637 two component transcriptional regulator, winged helix family K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D Shew_0080 integral membrane sensor signal transduction histidine kinase K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3] D Shew_0081 two component transcriptional regulator, winged helix family K07661 rstA; two-component system, OmpR family, response regulator RstA D Shew_2206 two component transcriptional regulator, winged helix family K07661 rstA; two-component system, OmpR family, response regulator RstA D Shew_3571 integral membrane sensor signal transduction histidine kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D Shew_3570 two component transcriptional regulator, winged helix family K07662 cpxR; two-component system, OmpR family, response regulator CpxR D Shew_3259 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Shew_3258 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D Shew_2801 multi-sensor hybrid histidine kinase K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3] D Shew_2803 two component transcriptional regulator, winged helix family K07772 torR; two-component system, OmpR family, torCAD operon response regulator TorR D Shew_0777 two component transcriptional regulator, winged helix family K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA D Shew_0803 integral membrane sensor signal transduction histidine kinase K18072 parS; two-component system, OmpR family, sensor kinase ParS [EC:2.7.13.3] D Shew_1936 two component transcriptional regulator, winged helix family K19610 pfeR; two-component system, OmpR family, response regulator PfeR D Shew_0895 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Shew_1791 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Shew_0097 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Shew_0896 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Shew_0804 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Shew_0583 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Shew_0843 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3] D Shew_0842 two component transcriptional regulator, LuxR family K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP D Shew_1200 Hpt sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D Shew_1824 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D Shew_3505 integral membrane sensor signal transduction histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D Shew_3506 two component transcriptional regulator, LuxR family K07693 desR; two-component system, NarL family, response regulator DesR D Shew_2328 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D Shew_2329 response regulator receiver protein K02477 K02477; two-component system, LytTR family, response regulator D Shew_3560 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D Shew_3561 nitrogen metabolism transcriptional regulator, NtrC, Fis family K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D Shew_1443 integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Shew_1442 two component, sigma54 specific, transcriptional regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D Shew_3681 integral membrane sensor signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D Shew_1386 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Shew_0113 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Shew_1384 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Shew_0114 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Shew_0109 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Shew_1387 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Shew_1343 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shew_2144 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shew_1457 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shew_0610 histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D Shew_1970 histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D Shew_0609 two component transcriptional regulator, LuxR family K13041 ttrR; two-component system, LuxR family, response regulator TtrR D Shew_1969 two component transcriptional regulator, LuxR family K13041 ttrR; two-component system, LuxR family, response regulator TtrR D Shew_3240 two component transcriptional regulator, LuxR family K14987 fixJ; two-component system, LuxR family, response regulator FixJ D Shew_1363 PAS/PAC sensor signal transduction histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D Shew_1364 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Shew_3343 integral membrane sensor signal transduction histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D Shew_3342 response regulator receiver protein K15012 regA; two-component system, response regulator RegA C 02035 Bacterial motility proteins [BR:slo02035] D Shew_1386 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Shew_0113 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Shew_1390 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Shew_0112 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Shew_1391 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Shew_3275 CheC domain protein K03409 cheX; chemotaxis protein CheX D Shew_0439 CheD, stimulates methylation of MCP proteins K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D Shew_0110 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Shew_1344 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Shew_0109 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Shew_1387 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Shew_1384 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Shew_0114 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Shew_1385 chemotaxis phosphatase, CheZ K03414 cheZ; chemotaxis protein CheZ D Shew_1343 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shew_2144 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shew_1457 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shew_1310 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_0111 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein D Shew_0085 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_0237 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_0922 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_0876 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_0808 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_0891 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein D Shew_0596 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_1868 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_2119 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_2217 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_2263 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_2301 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_2952 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_2954 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_2902 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shew_2577 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor D Shew_2159 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor D Shew_1368 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D Shew_1369 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Shew_1370 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D Shew_1375 flagellar biosynthesis protein, FliO K02418 fliO; flagellar protein FliO/FliZ D Shew_1376 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Shew_1377 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Shew_1378 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Shew_1380 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Shew_1379 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Shew_1367 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Shew_1373 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Shew_1374 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Shew_1366 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Shew_1352 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI D Shew_1342 SAF domain protein K02386 flgA; flagellar basal body P-ring formation protein FlgA D Shew_1351 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH D Shew_3742 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Shew_1372 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Shew_1365 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Shew_1371 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D Shew_1345 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Shew_1346 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D Shew_1347 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D Shew_1349 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D Shew_1350 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D Shew_1353 flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D Shew_1348 flagellar basal body FlaE domain protein K02390 flgE; flagellar hook protein FlgE D Shew_1354 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Shew_1355 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D Shew_1340 FlgN family protein K02399 flgN; flagellar biosynthesis protein FlgN D Shew_1339 protein of unknown function DUF400 K09860 flgP; outer membrane protein FlgP D Shew_3290 Sel1 domain protein repeat-containing protein K21217 motX; sodium-type polar flagellar protein MotX D Shew_1521 OmpA/MotB domain protein K21218 motY; sodium-type flagellar protein MotY D Shew_1356 flagellin domain protein K02406 fliC; flagellin D Shew_1357 flagellin domain protein K02406 fliC; flagellin D Shew_1359 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2 D Shew_1361 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D Shew_1383 RNA polymerase, sigma 28 subunit, FliA/WhiG family K02405 fliA; RNA polymerase sigma factor FliA D Shew_2768 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Shew_2767 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Shew_1362 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D Shew_1363 PAS/PAC sensor signal transduction histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D Shew_1364 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Shew_1341 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D Shew_1358 flagellar protein FlaG protein K06603 flaG; flagellar protein FlaG D Shew_1381 GTP-binding signal recognition particle SRP54, G-domain K02404 flhF; flagellar biosynthesis protein FlhF D Shew_1382 Cobyrinic acid a,c-diamide synthase K04562 flhG; flagellar biosynthesis protein FlhG D Shew_1138 twitching motility protein K02669 pilT; twitching motility protein PilT D Shew_1139 twitching motility protein K02670 pilU; twitching motility protein PilU D Shew_3436 methylation site containing protein K02650 pilA; type IV pilus assembly protein PilA D Shew_3438 type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB D Shew_3439 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC D Shew_3440 Prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Shew_1288 type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF D Shew_0212 type IV pilus secretin PilQ K02666 pilQ; type IV pilus assembly protein PilQ D Shew_0211 Pilus assembly protein, PilQ K02665 pilP; type IV pilus assembly protein PilP D Shew_0210 Pilus assembly protein, PilO K02664 pilO; type IV pilus assembly protein PilO D Shew_0209 Fimbrial assembly family protein K02663 pilN; type IV pilus assembly protein PilN D Shew_0208 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM D Shew_1581 type IV pilus assembly PilZ K02676 pilZ; type IV pilus assembly protein PilZ D Shew_1103 type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV D Shew_1104 prepilin-type cleavage/methylation-like protein K02672 pilW; type IV pilus assembly protein PilW D Shew_1105 type IV pilus assembly protein PilX K02673 pilX; type IV pilus assembly protein PilX D Shew_1106 type IV pilin biogenesis protein, putative K02674 pilY1; type IV pilus assembly protein PilY1 D Shew_1179 type IV pilin biogenesis protein, putative K02674 pilY1; type IV pilus assembly protein PilY1 D Shew_1107 methylation site containing protein K02655 pilE; type IV pilus assembly protein PilE D Shew_0646 SAF domain protein K02279 cpaB; pilus assembly protein CpaB D Shew_0645 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC D Shew_0644 FHA domain containing protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:slo04812] D Shew_0931 protein of unknown function DUF52 K06990 MEMO1; MEMO1 family protein D Shew_0403 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D Shew_2595 hypothetical protein K03569 mreB; rod shape-determining protein MreB and related proteins D Shew_3449 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Shew_3450 cell division protein FtsA K03590 ftsA; cell division protein FtsA D Shew_2184 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D Shew_2185 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D Shew_2186 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D Shew_3854 chromosome segregation ATPase K03496 parA; chromosome partitioning protein D Shew_2325 conserved hypothetical protein K03496 parA; chromosome partitioning protein D Shew_1389 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein D Shew_1281 conserved hypothetical protein K03496 parA; chromosome partitioning protein D Shew_3853 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:slo04147] D Shew_2232 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG D Shew_1205 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Shew_2000 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Shew_2002 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Shew_0754 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Shew_2050 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Shew_2890 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Shew_0827 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Shew_1516 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D Shew_0472 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Shew_2844 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Shew_1088 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Shew_0774 peptidase S9B, dipeptidylpeptidase IV domain protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D Shew_1297 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Shew_0144 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D Shew_0156 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D Shew_1731 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Shew_3084 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_2610 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_3776 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_2188 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_2866 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_3502 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shew_1667 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shew_2858 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shew_2053 Peptidyl-dipeptidase A K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1] D Shew_2230 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Shew_2236 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Shew_0206 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Shew_0205 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Shew_0773 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Shew_2287 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D Shew_3271 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D Shew_1168 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D Shew_3466 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D Shew_0972 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shew_3554 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shew_3382 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Shew_2155 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D Shew_1436 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D Shew_1157 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shew_1158 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shew_3226 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shew_3196 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Shew_3412 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Shew_3429 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shew_2583 electron transfer flavoprotein, alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit D Shew_2678 electron transfer flavoprotein, alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit D Shew_2048 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Shew_2831 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Shew_3085 Lipocalin family protein K03098 APOD; apolipoprotein D and lipocalin family protein C 02048 Prokaryotic defense system [BR:slo02048] D Shew_0216 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Shew_1261 type III restriction enzyme, res subunit K01156 res; type III restriction enzyme [EC:3.1.21.5] D Shew_1260 DNA methylase N-4/N-6 domain protein K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D Shew_0479 HipA domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D Shew_2494 phage shock protein C, PspC K03973 pspC; phage shock protein C D Shew_0421 phage shock protein C, PspC K03973 pspC; phage shock protein C D Shew_2495 phage shock B family protein K03970 pspB; phage shock protein B D Shew_3449 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Shew_0403 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D Shew_2595 hypothetical protein K03569 mreB; rod shape-determining protein MreB and related proteins D Shew_0551 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Shew_0549 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Shew_1449 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Shew_1046 conserved hypothetical protein K19168 cptA; toxin CptA D Shew_1045 protein of unknown function DUF339 K09159 cptB; antitoxin CptB D Shew_2317 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Shew_3354 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:slo04090] D Shew_0774 peptidase S9B, dipeptidylpeptidase IV domain protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D Shew_2053 Peptidyl-dipeptidase A K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1] C 01504 Antimicrobial resistance genes [BR:slo01504] D Shew_2582 Na+/H+ antiporter NhaC K18218 tet35; tetracycline resistance efflux pump D Shew_1536 putative chloramphenicol acetyltransferase K00638 catB; chloramphenicol O-acetyltransferase type B [EC:2.3.1.28] D Shew_0469 pentapeptide repeat protein K18555 qnr; fluoroquinolone resistance protein D Shew_2995 TonB family protein K02172 blaR1; bla regulator protein blaR1 D Shew_2994 transcriptional repressor, CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D Shew_0803 integral membrane sensor signal transduction histidine kinase K18072 parS; two-component system, OmpR family, sensor kinase ParS [EC:2.7.13.3] D Shew_3259 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Shew_3258 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D Shew_2696 integral membrane sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shew_2349 integral membrane sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shew_2348 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Shew_2695 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Shew_1163 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shew_0031 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shew_1851 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shew_1177 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shew_0032 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Shew_1852 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shew_1164 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Shew_1544 transcriptional regulator, TetR family K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D Shew_1313 transcriptional regulator, TetR family K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D Shew_1311 acriflavin resistance protein K18303 mexK; multidrug efflux pump D Shew_0544 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:slo00537] D Shew_1157 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shew_1158 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shew_3226 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:slo03100] D Shew_R0003 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shew_R0083 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shew_R0116 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shew_R0040 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shew_R0048 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shew_R0014 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shew_R0033 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shew_R0088 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shew_R0027 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shew_R0028 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shew_R0030 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shew_R0029 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shew_R0075 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shew_R0077 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shew_R0076 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shew_R0074 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shew_R0012 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shew_R0080 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shew_R0119 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shew_R0079 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shew_R0062 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Shew_R0066 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Shew_R0094 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Shew_R0098 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Shew_R0097 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Shew_R0041 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shew_R0042 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shew_R0045 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shew_R0044 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shew_R0043 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shew_R0047 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shew_R0046 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shew_R0019 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shew_R0061 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shew_R0020 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shew_R0067 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shew_R0021 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shew_R0022 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shew_R0008 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shew_R0015 tRNA-His K14226 tRNA-His; tRNA His D Shew_R0087 tRNA-His K14226 tRNA-His; tRNA His D Shew_R0002 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Shew_R0084 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Shew_R0117 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Shew_R0063 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shew_R0065 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shew_R0108 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shew_R0093 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shew_R0099 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shew_R0095 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shew_R0107 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shew_R0092 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shew_R0050 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shew_R0055 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shew_R0053 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shew_R0056 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shew_R0052 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shew_R0054 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shew_R0051 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shew_R0023 tRNA-Met K14230 tRNA-Met; tRNA Met D Shew_R0096 tRNA-Met K14230 tRNA-Met; tRNA Met D Shew_R0100 tRNA-Met K14230 tRNA-Met; tRNA Met D Shew_R0057 tRNA-Met K14230 tRNA-Met; tRNA Met D Shew_R0058 tRNA-Met K14230 tRNA-Met; tRNA Met D Shew_R0059 tRNA-Met K14230 tRNA-Met; tRNA Met D Shew_R0060 tRNA-Met K14230 tRNA-Met; tRNA Met D Shew_R0091 tRNA-Met K14230 tRNA-Met; tRNA Met D Shew_R0025 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Shew_R0105 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Shew_R0016 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shew_R0089 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shew_R0017 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shew_R0049 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shew_R0026 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shew_R0031 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shew_R0018 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shew_R0068 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shew_R0064 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shew_R0113 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shew_R0006 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shew_R0024 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shew_R0101 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Shew_R0007 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shew_R0073 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shew_R0071 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shew_R0072 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shew_R0034 tRNA-Val K14237 tRNA-Val; tRNA Val D Shew_R0038 tRNA-Val K14237 tRNA-Val; tRNA Val D Shew_R0037 tRNA-Val K14237 tRNA-Val; tRNA Val D Shew_R0036 tRNA-Val K14237 tRNA-Val; tRNA Val D Shew_R0039 tRNA-Val K14237 tRNA-Val; tRNA Val D Shew_R0035 tRNA-Val K14237 tRNA-Val; tRNA Val D Shew_R0069 tRNA-Val K14237 tRNA-Val; tRNA Val D Shew_R0070 tRNA-Val K14237 tRNA-Val; tRNA Val D Shew_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shew_R0125 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shew_R0009 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shew_R0085 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shew_R0118 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shew_R0111 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shew_R0122 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shew_R0104 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shew_R0004 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shew_R0110 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shew_R0115 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shew_R0124 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shew_R0121 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shew_R0082 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shew_R0103 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shew_R0010 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shew_R0005 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shew_R0011 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shew_R0081 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shew_R0112 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shew_R0109 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shew_R0123 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shew_R0120 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shew_R0102 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shew_R0114 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shew_R0086 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA D Shew_R0013 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA D Shew_R0032 ssrA; prediction based on tmRNA website at Indiana University K15035 ssrA; transfer-messenger RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D Shew_1716 3-beta hydroxysteroid dehydrogenase/isomerase K22320 oleD; 2-alkyl-3-oxoalkanoate reductase [EC:1.1.1.412] D Shew_3103 aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68] D Shew_0419 glyceraldehyde-3-phosphate dehydrogenase K25224 gapdh; glyceraldehyde-3-phosphate dehydrogenase (arsenate-transferring) [EC:1.2.1.107] D Shew_1942 2,4-dienoyl-CoA reductase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34] D Shew_2675 acyl-CoA dehydrogenase domain protein K08297 caiA; crotonobetainyl-CoA dehydrogenase [EC:1.3.8.13] D Shew_2266 (2Fe-2S)-binding domain protein K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16] D Shew_2265 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16] D Shew_0086 Electron-transferring-flavoprotein dehydrogenase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] D Shew_2679 FAD dependent oxidoreductase K00313 fixC; electron transfer flavoprotein-quinone oxidoreductase [EC:1.5.5.-] D Shew_3274 Alcohol dehydrogenase, zinc-binding domain protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D Shew_0914 NADPH-dependent FMN reductase K03206 azr; azobenzene reductase [EC:1.7.1.6] D Shew_3529 (Acyl-carrier-protein) phosphodiesterase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D Shew_0793 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-] D Shew_0524 cytochrome c, class I K19713 tsdA; thiosulfate dehydrogenase [EC:1.8.2.2] D Shew_1923 peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D Shew_1591 peptide methionine sulfoxide reductase K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12] D Shew_2458 Glutathione S-transferase, C-terminal domain K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D Shew_2137 Glutathione S-transferase, C-terminal domain K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7] D Shew_2276 glutathione S-transferase K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7] D Shew_2123 oxidoreductase, molybdopterin binding K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-] D Shew_1846 Redoxin domain protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Shew_0669 Redoxin domain protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Shew_0792 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26] D Shew_1244 OsmC family protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D Shew_0864 Dyp-type peroxidase family K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-] D Shew_1764 nickel-dependent hydrogenase, large subunit K05922 hydB; quinone-reactive Ni/Fe-hydrogenase large subunit [EC:1.12.5.1] D Shew_1765 hydrogenase (NiFe) small subunit HydA K05927 hydA; quinone-reactive Ni/Fe-hydrogenase small subunit [EC:1.12.5.1] D Shew_0700 Pirin domain protein domain protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D Shew_3576 cysteine dioxygenase type I K24700 mdo; 3-mercaptopropionate dioxygenase [EC:1.13.11.91] D Shew_0042 Ferritin, Dps family protein K02217 ftnA; ferritin [EC:1.16.3.2] D Shew_0858 oxidoreductase FAD/NAD(P)-binding domain protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D Shew_1840 arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D Shew_2448 ribonucleoside-triphosphate reductase class III activase subunit K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4] D Shew_2391 pyruvate formate-lyase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Shew_0932 Radical SAM domain protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Shew_1070 Oxidoreductase FAD-binding domain protein K11933 hcr; NADH oxidoreductase Hcr [EC:1.-.-.-] D Shew_1211 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D Shew_1484 cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D Shew_0073 Radical SAM domain protein K23078 mqnK; menaquinone C8-methyltransferase [EC:2.1.1.350] D Shew_2974 transferase hexapeptide repeat containing protein K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79] D Shew_2927 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D Shew_2806 GCN5-related N-acetyltransferase K03824 yhbS; putative acetyltransferase [EC:2.3.1.-] D Shew_0737 transcriptional regulator, MarR family with acetyltransferase activity K03828 yjgM; putative acetyltransferase [EC:2.3.1.-] D Shew_3527 GCN5-related N-acetyltransferase K03829 yedL; putative acetyltransferase [EC:2.3.1.-] D Shew_1284 Acetyltransferase, GNAT family K03830 yafP; putative acetyltransferase [EC:2.3.1.-] D Shew_1569 Leucyltransferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D Shew_2128 transglutaminase domain protein K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13] D Shew_1568 Arginyltransferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29] D Shew_1713 3-Oxoacyl-(acyl-carrier-protein (ACP)) synthase III C terminal domain protein K22317 oleA; acyl-CoA:acyl-CoA alkyltransferase [EC:2.3.3.20] D Shew_1966 DTW domain containing protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] D Shew_2099 DTW domain containing protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] D Shew_3586 DTW domain containing protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] D Shew_3171 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D Shew_2875 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Shew_1898 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Shew_1971 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Shew_1548 protein of unknown function DUF299 K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D Shew_0628 (Glutamate--ammonia-ligase) adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D Shew_0262 protein of unknown function UPF0061 K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108] D Shew_3263 serine/threonine protein kinase K08282 E2.7.11.1; non-specific serine/threonine protein kinase [EC:2.7.11.1] D Shew_2674 L-carnitine dehydratase/bile acid-inducible protein F K08298 caiB; L-carnitine CoA-transferase [EC:2.8.3.21] D Shew_1523 4-hydroxybenzoyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Shew_3775 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Shew_3518 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Shew_3772 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Shew_2780 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Shew_2250 PHP C-terminal domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D Shew_2419 phosphohistidine phosphatase, SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D Shew_3199 response regulator receiver modulated metal dependent phosphohydrolase K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-] D Shew_2259 metal dependent phosphohydrolase K25135 K25135; cyclic di-GMP phosphodiesterase [EC:3.1.4.-] D Shew_3670 metal dependent phosphohydrolase K25135 K25135; cyclic di-GMP phosphodiesterase [EC:3.1.4.-] D Shew_2981 beta-lactamase domain protein K25227 sdsA1; linear primary-alkylsulfatase [EC:3.1.6.21] D Shew_3832 putative hydrolase K25227 sdsA1; linear primary-alkylsulfatase [EC:3.1.6.21] D Shew_3223 Deoxyribonuclease I K01150 endA; deoxyribonuclease I [EC:3.1.21.1] D Shew_2818 TatD-related deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Shew_3380 Sec-independent protein translocase TatD K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Shew_1582 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Shew_0382 nuclease (SNase domain protein) K01174 nuc; micrococcal nuclease [EC:3.1.31.1] D Shew_1920 alpha/beta hydrolase fold K01175 ybfF; esterase [EC:3.1.-.-] D Shew_1887 alpha amylase, catalytic region K21575 susA; neopullulanase [EC:3.2.1.135] D Shew_3745 glycoside hydrolase, family 37 K03931 ygjK; glucosidase [EC:3.2.1.-] D Shew_2103 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D Shew_3736 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D Shew_1494 uncharacterized conserved protein UCP029143 K09900 E3.5.1.135; N4-acetylcytidine amidohydrolase [EC:3.5.1.135] D Shew_0619 adenylate cyclase K18446 ygiF; triphosphatase [EC:3.6.1.25] D Shew_1597 maf protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-] D Shew_2126 ATPase associated with various cellular activities, AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Shew_2427 ATPase associated with various cellular activities, AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Shew_1714 alpha/beta hydrolase fold K22318 oleB; cis-3-alkyl-4-acyloxetan-2-one decarboxylase [EC:4.1.1.114] D Shew_0561 carbohydrate kinase, YjeF-related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D Shew_2672 short chain enoyl-CoA hydratase K08299 caiD; crotonobetainyl-CoA hydratase [EC:4.2.1.149] D Shew_0956 peptidylprolyl isomerase, FKBP-type K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8] D Shew_1715 AMP-dependent synthetase and ligase K22319 oleC; olefin beta-lactone synthetase [EC:6.1.3.1] D Shew_2673 AMP-dependent synthetase and ligase K02182 caiC; carnitine-CoA ligase [EC:6.2.1.48] D Shew_3144 UDP-N-acetylmuramate K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45] D Shew_1587 ATP dependent DNA ligase K26441 lig; DNA ligase [EC:6.5.1.1] D Shew_2069 electron transport complex, RnfABCDGE type, D subunit K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2] D Shew_2068 electron transport complex, RnfABCDGE type, C subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2] D Shew_2067 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D Shew_2709 NADH:ubiquinone oxidoreductase, subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1] D Shew_2881 NADH:ubiquinone oxidoreductase, subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1] D Shew_2708 NADH:ubiquinone oxidoreductase, subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1] D Shew_2880 NADH:ubiquinone oxidoreductase, subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1] D Shew_2707 NADH:ubiquinone oxidoreductase, subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1] D Shew_2879 NADH:ubiquinone oxidoreductase, subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1] D Shew_2706 NADH:ubiquinone oxidoreductase, subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1] D Shew_2878 NADH:ubiquinone oxidoreductase, subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1] D Shew_2705 NADH:ubiquinone oxidoreductase, subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1] D Shew_2877 NADH:ubiquinone oxidoreductase, subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1] D Shew_2704 NADH:ubiquinone oxidoreductase, subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1] D Shew_2876 NADH:ubiquinone oxidoreductase, subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1] D Shew_1990 heavy metal translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D Shew_3215 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] C 99981 Carbohydrate metabolism D Shew_3128 sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A D Shew_2802 TonB box domain protein K11930 torT; periplasmic protein TorT D Shew_2794 CBS domain containing protein K04767 acuB; acetoin utilization protein AcuB D Shew_3004 protein of unknown function DUF224, cysteine-rich region domain protein K18928 lldE; L-lactate dehydrogenase complex protein LldE D Shew_3005 4Fe-4S ferredoxin, iron-sulfur binding domain protein K18929 lldF; L-lactate dehydrogenase complex protein LldF D Shew_3006 conserved hypothetical protein K00782 lldG; L-lactate dehydrogenase complex protein LldG C 99982 Energy metabolism D Shew_0053 formate dehydrogenase, subunit FdhD K02379 fdhD; FdhD protein D Shew_2312 ferredoxin, 2Fe-2S type, ISC system K04755 fdx; ferredoxin, 2Fe-2S D Shew_1944 ferredoxin K11107 yfaE; ferredoxin D Shew_2070 electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G D Shew_2071 electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E D Shew_2066 electron transport complex, RnfABCDGE type, A subunit K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A D Shew_3857 flavodoxin/nitric oxide synthase K06205 mioC; MioC protein D Shew_2316 FeS cluster assembly scaffold IscU K04488 iscU; nitrogen fixation protein NifU and related proteins D Shew_3205 NapD family protein K02570 napD; periplasmic nitrate reductase NapD D Shew_1769 periplasmic nitrate reductase chaperone NapD K02570 napD; periplasmic nitrate reductase NapD D Shew_1432 ferredoxin-type protein NapF K02572 napF; ferredoxin-type protein NapF D Shew_2796 periplasmic nitrate reductase NapE K02571 napE; periplasmic nitrate reductase NapE D Shew_1768 periplasmic nitrate reductase NapE K02571 napE; periplasmic nitrate reductase NapE D Shew_0346 cytochrome C biogenesis protein K04017 nrfF; formate-dependent nitrite reductase complex subunit NrfF D Shew_0351 Tetratricopeptide TPR_2 repeat protein K04018 nrfG; formate-dependent nitrite reductase complex subunit NrfG D Shew_1917 flavodoxin K03839 fldA; flavodoxin I D Shew_1772 periplasmic nitrate reductase subunit NapC K02569 napC; cytochrome c-type protein NapC D Shew_3207 periplasmic nitrate reductase subunit NapG K02573 napG; ferredoxin-type protein NapG D Shew_3208 periplasmic nitrate reductase subunit NapH K02574 napH; ferredoxin-type protein NapH D Shew_2584 electron transfer flavoprotein beta-subunit K03521 fixA; electron transfer flavoprotein beta subunit D Shew_2677 electron transfer flavoprotein beta-subunit K03521 fixA; electron transfer flavoprotein beta subunit D Shew_2680 putative ferredoxin K03855 fixX; ferredoxin like protein D Shew_3156 conserved hypothetical protein K04013 nrfB; cytochrome c-type protein NrfB D Shew_3157 4Fe-4S ferredoxin, iron-sulfur binding domain protein K04014 nrfC; protein NrfC D Shew_0352 4Fe-4S ferredoxin, iron-sulfur binding domain protein K04014 nrfC; protein NrfC D Shew_3158 Polysulphide reductase, NrfD K04015 nrfD; protein NrfD D Shew_0353 Polysulphide reductase, NrfD K04015 nrfD; protein NrfD D Shew_3245 Polysulphide reductase, NrfD K04015 nrfD; protein NrfD D Shew_2980 protein of unknown function DUF1458 K09165 K09165; dodecin C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D Shew_2380 protein of unknown function DUF540 K06203 cysZ; CysZ protein D Shew_3213 Glyoxalase/bleomycin resistance protein/dioxygenase K08234 yaeR; glyoxylase I family protein D Shew_1137 alanine racemase domain protein K06997 yggS; PLP dependent protein D Shew_1744 GCN5-related N-acetyltransferase K22479 argA; N-acetyltransferase C 99986 Glycan metabolism D Shew_1956 protein of unknown function DUF1049 K08992 lapA; lipopolysaccharide assembly protein A D Shew_1957 conserved hypothetical protein K19804 lapB; lipopolysaccharide assembly protein B C 99987 Cofactor metabolism D Shew_0315 HemY domain protein K02498 hemY; HemY protein D Shew_3375 2-octaprenylphenol hydroxylase K03688 ubiB; ubiquinone biosynthesis protein D Shew_3374 protein of unknown function DUF1243 K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ D Shew_0304 protein of unknown function DUF526 K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK D Shew_2786 Sterol-binding domain protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT D Shew_3654 AbgT putative transporter K12942 abgT; aminobenzoyl-glutamate transport protein C 99988 Secondary metabolism C 99999 Others D Shew_2277 DoxX family protein K15977 K15977; putative oxidoreductase D Shew_2136 Carboxylesterase K06999 K06999; phospholipase/carboxylesterase D Shew_2039 GCN5-related N-acetyltransferase K09181 yfiQ; acetyltransferase B B 09192 Unclassified: genetic information processing C 99973 Transcription D Shew_1165 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D Shew_1564 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D Shew_1614 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D Shew_3423 regulator of RpoD, Rsd/AlgQ K07740 rsd; regulator of sigma D D Shew_0846 nitrogen regulatory protein P-II K04752 glnK; nitrogen regulatory protein P-II 2 D Shew_3634 RNA binding S1 domain protein K06959 tex; protein Tex C 99974 Translation D Shew_3327 RNA-metabolising metallo-beta-lactamase K07576 K07576; metallo-beta-lactamase family protein C 99975 Protein processing D Shew_0744 protein of unknown function DUF306, Meta and HslJ K03668 hslJ; heat shock protein HslJ D Shew_1565 ATP-dependent Clp protease adaptor protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D Shew_2509 trigger factor K03545 tig; trigger factor D Shew_2122 Ferric reductase domain protein transmembrane component, N-terminal domain K17247 msrQ; methionine sulfoxide reductase heme-binding subunit D Shew_0327 HupE/UreJ protein K03192 ureJ; urease accessory protein D Shew_1268 SsrA-binding protein K03664 smpB; SsrA-binding protein D Shew_1758 hydrogenase assembly chaperone hypC/hupF K04653 hypC; hydrogenase expression/formation protein HypC D Shew_1757 hydrogenase expression/formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD D Shew_1756 hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE D Shew_1760 (NiFe) hydrogenase maturation protein HypF K04656 hypF; hydrogenase maturation protein HypF D Shew_0283 Mg chelatase, subunit ChlI K07391 comM; magnesium chelatase family protein D Shew_1909 2OG-Fe(II) oxygenase K07394 K07394; SM-20-related protein D Shew_0106 HesB/YadR/YfhF-family protein K07400 nfuA; Fe/S biogenesis protein NfuA D Shew_2268 protein of unknown function DUF182 K07402 xdhC; xanthine dehydrogenase accessory factor D Shew_1786 protein of unknown function DUF107 K07403 nfeD; membrane-bound serine protease (ClpP class) C 99976 Replication and repair D Shew_2105 methylated-DNA-(protein)-cysteine S-methyltransferase K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein D Shew_2756 5'-3' exonuclease K01146 xni; protein Xni D Shew_1257 DNA repair protein RadC K03630 radC; DNA repair protein RadC D Shew_3481 DNA repair protein RadC K03630 radC; DNA repair protein RadC D Shew_2124 protein of unknown function DUF195 K09760 rmuC; DNA recombination protein RmuC D Shew_0226 protein of unknown function UPF0102 K07460 yraN; putative endonuclease D Shew_0038 Excinuclease ABC, C subunit domain protein K07461 K07461; putative endonuclease D Shew_3734 DNA protecting protein DprA K04096 smf; DNA processing protein D Shew_2022 AAA ATPase, central domain protein K07478 ycaJ; putative ATPase D Shew_3731 DNA topoisomerase, type IA, zn finger domain protein K07479 yrdD; putative DNA topoisomerase D Shew_3838 transposase, IS4 family K07481 K07481; transposase, IS5 family D Shew_3829 transposase IS3/IS911 family protein K07483 K07483; transposase D Shew_3836 IS66 Orf2 family protein K07484 K07484; transposase D Shew_3009 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase D Shew_2273 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase D Shew_0928 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase D Shew_1141 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase D Shew_3552 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase D Shew_3830 Integrase, catalytic region K07497 K07497; putative transposase C 99979 Viral proteins C 99998 Others D Shew_2496 phage shock protein A, PspA K03969 pspA; phage shock protein A D Shew_2442 Rhodanese domain protein K03972 pspE; phage shock protein E D Shew_3528 Rhodanese domain protein K03972 pspE; phage shock protein E D Shew_2234 conserved hypothetical protein 103 K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D Shew_1648 acriflavin resistance protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D Shew_1647 acriflavin resistance protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D Shew_0049 choline/carnitine/betaine transporter K03451 TC.BCT; betaine/carnitine transporter, BCCT family D Shew_1397 amino acid/peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D Shew_2104 major facilitator superfamily MFS_1 K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D Shew_0617 phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family D Shew_3013 sodium/proline symporter K03307 TC.SSS; solute:Na+ symporter, SSS family D Shew_3270 SSS sodium solute transporter superfamily K03307 TC.SSS; solute:Na+ symporter, SSS family D Shew_2286 SSS sodium solute transporter superfamily K03307 TC.SSS; solute:Na+ symporter, SSS family D Shew_2896 sodium:neurotransmitter symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D Shew_0300 sodium:neurotransmitter symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D Shew_0424 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D Shew_0496 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D Shew_1092 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D Shew_0769 branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family D Shew_2817 nucleoside transporter K03317 TC.CNT; concentrative nucleoside transporter, CNT family C 99978 Cell growth D Shew_2260 intracellular septation protein A K06190 ispZ; intracellular septation protein D Shew_0328 protein of unknown function DUF542, ScdA domain protein K07322 ytfE; regulator of cell morphogenesis and NO signaling D Shew_1831 SpoVR family protein K06415 spoVR; stage V sporulation protein R D Shew_1328 acylneuraminate cytidylyltransferase K07257 spsF; spore coat polysaccharide biosynthesis protein SpsF D Shew_3807 peptidase M23B K22719 envC; murein hydrolase activator C 99993 Cell motility D Shew_0836 membrane lipoprotein lipid attachment site K07337 K07337; penicillin-binding protein activator D Shew_2653 Syd family protein K15723 syd; SecY interacting protein Syd C 99995 Signaling proteins D Shew_3433 signaling modulator of AmpD, AmpE K03807 ampE; AmpE protein D Shew_1801 ProQ activator of osmoprotectant transporter ProP K03607 proQ; ProP effector D Shew_3101 UspA domain protein K06149 uspA; universal stress protein A D Shew_1994 UspA domain protein K14055 uspE; universal stress protein E D Shew_3216 conserved hypothetical protein K14055 uspE; universal stress protein E D Shew_2169 hypothetical protein K14055 uspE; universal stress protein E D Shew_3553 GTP-binding protein TypA K06207 typA; GTP-binding protein D Shew_1477 anti-ECFsigma factor, ChrR K07167 chrR; putative transcriptional regulator D Shew_0831 CBS domain containing membrane protein K07168 K07168; CBS domain-containing membrane protein D Shew_2924 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D Shew_0458 PhoH family protein K07175 phoH2; PhoH-like ATPase D Shew_1833 putative serine protein kinase, PrkA K07180 prkA; serine protein kinase D Shew_0051 cyclic nucleotide-binding protein K07182 K07182; CBS domain-containing protein D Shew_2369 cyclic nucleotide-binding protein K07182 K07182; CBS domain-containing protein D Shew_0616 SH3 domain protein domain protein K07184 ygiM; SH3 domain protein D Shew_2811 membrane protein K07186 smp; membrane protein D Shew_2893 protein of unknown function DUF520 K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins D Shew_2023 outer membrane lipoprotein carrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein D Shew_2914 outer membrane lipoprotein LolB K02494 lolB; outer membrane lipoprotein LolB D Shew_1395 VacJ family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA D Shew_1570 17 kDa surface antigen K06077 slyB; outer membrane lipoprotein SlyB D Shew_2626 outer membrane chaperone Skp (OmpH) K06142 hlpA; outer membrane protein D Shew_1212 peptidase M23B K06194 nlpD; lipoprotein NlpD D Shew_2821 Tetratricopeptide TPR_2 repeat protein K05803 nlpI; lipoprotein NlpI D Shew_2554 OmpW family protein K07275 ompW; outer membrane protein D Shew_3285 protein of unknown function DUF481 K07283 ydiY; putative salt-induced outer membrane protein D Shew_0756 protein of unknown function DUF481 K07283 ydiY; putative salt-induced outer membrane protein D Shew_2889 uncharacterized lipoprotein K07286 yajG; uncharacterized lipoprotein D Shew_2116 AsmA family protein K07289 asmA; AsmA protein D Shew_3388 protein of unknown function DUF107 K07340 ybbJ; inner membrane protein D Shew_0412 secretion protein HlyD family protein K01993 ABC-2.TX; HlyD family secretion protein D Shew_0427 conserved hypothetical protein K01993 ABC-2.TX; HlyD family secretion protein D Shew_0721 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein D Shew_2398 protein of unknown function UPF0118 K11744 tqsA; AI-2 transport protein TqsA D Shew_0303 Inner membrane CreD family protein K06143 creD; inner membrane protein D Shew_0186 CcmE/CycJ protein K02197 ccmE; cytochrome c-type biogenesis protein CcmE D Shew_0192 TPR repeat-containing protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH D Shew_0195 cytochrome C biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH D Shew_1289 conserved hypothetical protein K15539 rodZ; cytoskeleton protein RodZ C 99994 Others D Shew_1701 phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein D Shew_0552 BFD domain protein (2Fe-2S)-binding domain protein K02192 bfd; bacterioferritin-associated ferredoxin D Shew_3265 CutA1 divalent ion tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein D Shew_0878 ApaG domain protein K06195 apaG; ApaG protein D Shew_0320 Frataxin family protein K06202 cyaY; iron-sulfur cluster assembly protein CyaY D Shew_0492 methyl-accepting chemotaxis sensory transducer K07216 hr; hemerythrin D Shew_3401 periplasmic copper-binding K07218 nosD; nitrous oxidase accessory protein D Shew_0355 periplasmic copper-binding K07218 nosD; nitrous oxidase accessory protein D Shew_0052 DNA binding domain, excisionase family K07219 K07219; putative molybdopterin biosynthesis protein D Shew_0676 putative lipoprotein K07231 K07231; putative iron-regulated protein D Shew_3256 copper resistance B precursor K07233 pcoB; copper resistance protein B D Shew_0504 NnrS family protein K07234 K07234; uncharacterized protein involved in response to NO D Shew_2322 NnrS family protein K07234 K07234; uncharacterized protein involved in response to NO D Shew_3843 DsrE family protein K06039 ychN; uncharacterized protein involved in oxidation of intracellular sulfur D Shew_3404 NosL family protein K19342 nosL; copper chaperone NosL D Shew_0354 NosL family protein K19342 nosL; copper chaperone NosL B B 09194 Poorly characterized C 99996 General function prediction only D Shew_2303 Colicin V production protein K03558 cvpA; membrane protein required for colicin V production D Shew_1997 bax protein, putative K03796 bax; Bax protein D Shew_3159 uncharacterized FlgJ-related protein-like K03796 bax; Bax protein D Shew_3397 GCN5-related N-acetyltransferase K02348 elaA; ElaA protein D Shew_1420 PHP C-terminal domain protein K04477 ycdX; putative hydrolase D Shew_3728 globin K06886 glbN; hemoglobin D Shew_3427 Patatin K07001 K07001; NTE family protein D Shew_2451 Patatin K07001 K07001; NTE family protein D Shew_2615 Patatin K07001 K07001; NTE family protein D Shew_1017 iron-sulfur cluster assembly accessory protein K15724 erpA; iron-sulfur cluster insertion protein D Shew_3545 tRNA-processing RNAse BN K07058 K07058; membrane protein D Shew_3264 FxsA cytoplasmic membrane protein K07113 fxsA; UPF0716 protein FxsA D Shew_0734 Fe-S metabolism associated SufE K02426 sufE; cysteine desulfuration protein SufE D Shew_1781 Rhodanese domain protein K07146 K07146; UPF0176 protein D Shew_1559 protein of unknown function DUF489 K07153 hflD; high frequency lysogenization protein D Shew_3652 LemA family protein K03744 lemA; LemA protein D Shew_0838 SlyX family protein K03745 slyX; SlyX protein D Shew_3733 protein of unknown function DUF494 K03747 smg; Smg protein D Shew_1788 CreA family protein K05805 creA; CreA protein D Shew_3222 protein of unknown function DUF335, SprT K02742 sprT; SprT protein D Shew_2304 Sporulation domain protein K03749 dedD; DedD protein D Shew_0215 Sporulation domain protein K03112 damX; DamX protein D Shew_1797 Paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A D Shew_1798 Paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A D Shew_0960 protein of unknown function DUF368 K08974 K08974; putative membrane protein D Shew_2966 membrane-flanked domain protein K08981 K08981; putative membrane protein D Shew_3092 membrane-flanked domain protein K08981 K08981; putative membrane protein D Shew_3195 conserved hypothetical protein K08984 yjdF; putative membrane protein D Shew_2492 conserved hypothetical protein 1620 K08990 ycjF; putative membrane protein D Shew_3608 protein of unknown function DUF1145 K08993 yhhL; putative membrane protein D Shew_2056 SEC-C motif domain protein K09858 K09858; SEC-C motif domain protein D Shew_2552 conserved hypothetical protein K09914 K09914; putative lipoprotein D Shew_2555 conserved hypothetical protein K09914 K09914; putative lipoprotein D Shew_0817 Cupin 2, conserved barrel domain protein K11312 K11312; cupin 2 domain-containing protein D Shew_2323 phosphate-starvation-inducible E K13256 psiE; protein PsiE D Shew_1931 alkylphosphonate utilization operon protein PhnA K06193 phnA; protein PhnA C 99997 Function unknown D Shew_1978 conserved hypothetical protein K06889 K06889; uncharacterized protein D Shew_1979 putative dienelactone hydrolase-related enzyme K06889 K06889; uncharacterized protein D Shew_2712 peptidase S15 K06889 K06889; uncharacterized protein D Shew_3047 conserved hypothetical signal peptide protein K06889 K06889; uncharacterized protein D Shew_2493 protein of unknown function DUF463, YcjX family protein K06918 K06918; uncharacterized protein D Shew_0501 protein of unknown function DUF134 K06933 K06933; uncharacterized protein D Shew_0894 protein of unknown function DUF1289 K06938 K06938; uncharacterized protein D Shew_1710 protein of unknown function DUF1289 K06938 K06938; uncharacterized protein D Shew_3811 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein D Shew_1482 amine oxidase K06954 K06954; uncharacterized protein D Shew_3774 acetyltransferase-like K06975 K06975; uncharacterized protein D Shew_2869 peptidase S15 K06978 K06978; uncharacterized protein D Shew_0780 Succinylglutamate desuccinylase/aspartoacylase K06987 K06987; uncharacterized protein D Shew_3665 Succinylglutamate desuccinylase/aspartoacylase K06987 K06987; uncharacterized protein D Shew_0964 protein of unknown function DUF861, cupin_3 K06995 K06995; uncharacterized protein D Shew_1506 Glyoxalase/bleomycin resistance protein/dioxygenase K06996 K06996; uncharacterized protein D Shew_2543 glyoxalase family protein K06996 K06996; uncharacterized protein D Shew_3533 Glyoxalase/bleomycin resistance protein/dioxygenase K06996 K06996; uncharacterized protein D Shew_0548 protein of unknown function UPF0227 K07000 K07000; uncharacterized protein D Shew_1627 protein of unknown function UPF0227 K07000 K07000; uncharacterized protein D Shew_1808 conserved hypothetical protein K07003 K07003; uncharacterized protein D Shew_3193 Endonuclease/exonuclease/phosphatase K07004 K07004; uncharacterized protein D Shew_2170 Endonuclease/exonuclease/phosphatase K07004 K07004; uncharacterized protein D Shew_1470 sulfatase K07014 K07014; uncharacterized protein D Shew_2744 putative esterase K07017 K07017; uncharacterized protein D Shew_1666 putative esterase K07017 K07017; uncharacterized protein D Shew_3769 conserved hypothetical protein K07017 K07017; uncharacterized protein D Shew_0589 alpha/beta hydrolase fold K07019 K07019; uncharacterized protein D Shew_2763 dienelactone hydrolase K07020 K07020; uncharacterized protein D Shew_0904 GPR1/FUN34/yaaH family protein K07034 K07034; uncharacterized protein D Shew_0594 conserved hypothetical protein K07070 K07070; uncharacterized protein D Shew_2400 domain of unknown function DUF1731 K07071 K07071; uncharacterized protein D Shew_0599 conserved hypothetical protein K07074 K07074; uncharacterized protein D Shew_1247 protein of unknown function DUF897 K07086 K07086; uncharacterized protein D Shew_3410 permease K07089 K07089; uncharacterized protein D Shew_0486 permease K07089 K07089; uncharacterized protein D Shew_1040 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Shew_3094 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Shew_2464 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Shew_2484 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Shew_0518 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Shew_0833 hypoxanthine-guanine phosphoribosyltransferase K07101 K07101; uncharacterized protein D Shew_0730 protein of unknown function DUF395, YeeE/YedE K07112 K07112; uncharacterized protein D Shew_0731 protein of unknown function DUF395, YeeE/YedE K07112 K07112; uncharacterized protein D Shew_0824 NAD-dependent epimerase/dehydratase K07118 K07118; uncharacterized protein D Shew_0227 LppC family lipoprotein K07121 K07121; uncharacterized protein D Shew_2703 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein D Shew_0527 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein D Shew_0528 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein D Shew_0529 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein D Shew_0586 tetratricopeptide TPR_2 repeat protein K07126 K07126; uncharacterized protein D Shew_3592 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein D Shew_3770 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein D Shew_0232 conserved hypothetical protein K07136 K07136; uncharacterized protein D Shew_1033 conserved hypothetical radical SAM protein K07139 K07139; uncharacterized protein D Shew_1475 conserved hypothetical protein K07157 K07157; uncharacterized protein D Shew_3349 ATP-dependent protease La (LON) domain protein, putative K07157 K07157; uncharacterized protein D Shew_3867 protein of unknown function DUF37 K08998 K08998; uncharacterized protein D Shew_0641 protein of unknown function DUF192 K09005 K09005; uncharacterized protein D Shew_0998 GatB/Yqey domain protein K09117 K09117; uncharacterized protein D Shew_1134 protein of unknown function DUF167 K09131 K09131; uncharacterized protein D Shew_0930 AMMECR1 domain protein K09141 K09141; uncharacterized protein D Shew_2940 protein of unknown function DUF493 K09158 K09158; uncharacterized protein D Shew_2181 protein of unknown function UPF0153 K09160 K09160; uncharacterized protein D Shew_3091 membrane-flanked domain protein K09167 K09167; uncharacterized protein D Shew_1483 protein of unknown function DUF1365 K09701 K09701; uncharacterized protein D Shew_3029 protein of unknown function DUF985 K09705 K09705; uncharacterized protein D Shew_1867 conserved hypothetical protein K09707 K09707; uncharacterized protein D Shew_0104 protein of unknown function DUF333 K09712 K09712; uncharacterized protein D Shew_3231 protein of unknown function DUF342 K09749 K09749; uncharacterized protein D Shew_2726 protein of unknown function DUF188 K09768 K09768; uncharacterized protein D Shew_2261 YCII-related protein K09780 K09780; uncharacterized protein D Shew_0826 protein of unknown function DUF808 K09781 K09781; uncharacterized protein D Shew_1832 protein of unknown function DUF444 K09786 K09786; uncharacterized protein D Shew_2237 protein of unknown function DUF454 K09790 K09790; uncharacterized protein D Shew_1640 protein of unknown function DUF343 K09791 K09791; uncharacterized protein D Shew_1992 conserved hypothetical protein K09792 K09792; uncharacterized protein D Shew_1538 conserved hypothetical protein K09794 K09794; uncharacterized protein D Shew_3391 protein of unknown function DUF465 K09794 K09794; uncharacterized protein D Shew_2438 protein of unknown function DUF541 K09797 K09797; uncharacterized protein D Shew_3809 protein of unknown function DUF610, YibQ K09798 K09798; uncharacterized protein D Shew_1270 protein of unknown function UPF0125 K09801 K09801; uncharacterized protein D Shew_3168 protein of unknown function DUF541 K09807 K09807; uncharacterized protein D Shew_2874 protein of unknown function DUF539 K05952 K05952; uncharacterized protein D Shew_1618 conserved hypothetical protein K00243 K00243; uncharacterized protein D Shew_0837 Tetratricopeptide TPR_2 repeat protein K09859 K09859; uncharacterized protein D Shew_1093 protein of unknown function DUF328 K09861 K09861; uncharacterized protein D Shew_3443 protein of unknown function DUF329 K09862 K09862; uncharacterized protein D Shew_1199 protein of unknown function DUF416 K09891 K09891; uncharacterized protein D Shew_3718 conserved hypothetical protein K09894 K09894; uncharacterized protein D Shew_3067 yecA family protein K09895 K09895; uncharacterized protein D Shew_2898 protein of unknown function DUF413 K09897 K09897; uncharacterized protein D Shew_0588 protein of unknown function UPF0270 K09898 K09898; uncharacterized protein D Shew_2392 protein of unknown function DUF412 K09899 K09899; uncharacterized protein D Shew_2183 protein of unknown function DUF709 K09902 K09902; uncharacterized protein D Shew_1471 protein of unknown function DUF1414 K09904 K09904; uncharacterized protein D Shew_1489 protein of unknown function DUF991 K09907 K09907; uncharacterized protein D Shew_2355 conserved hypothetical protein K09909 K09909; uncharacterized protein D Shew_2486 conserved hypothetical protein K09909 K09909; uncharacterized protein D Shew_0841 uncharacterized conserved protein UCP006287 K09910 K09910; uncharacterized protein D Shew_1960 conserved hypothetical protein K09912 K09912; uncharacterized protein D Shew_1617 protein of unknown function DUF480 K09915 K09915; uncharacterized protein D Shew_1939 protein of unknown function DUF1315 K09916 K09916; uncharacterized protein D Shew_1799 YebG family protein K09918 K09918; uncharacterized protein D Shew_2157 protein of unknown function DUF482 K09919 K09919; uncharacterized protein D Shew_0546 protein of unknown function DUF1249 K09920 K09920; uncharacterized protein D Shew_0324 protein of unknown function DUF484 K09921 K09921; uncharacterized protein D Shew_1125 protein of unknown function DUF469 K09923 K09923; uncharacterized protein D Shew_1989 conserved hypothetical protein K09926 K09926; uncharacterized protein D Shew_1636 conserved hypothetical protein K09928 K09928; uncharacterized protein D Shew_2239 conserved hypothetical protein K09929 K09929; uncharacterized protein D Shew_2240 protein of unknown function DUF692 K09930 K09930; uncharacterized protein D Shew_3292 conserved hypothetical protein K09937 K09937; uncharacterized protein D Shew_1837 conserved hypothetical protein K09938 K09938; uncharacterized protein D Shew_0084 conserved hypothetical protein K09940 K09940; uncharacterized protein D Shew_1683 protein of unknown function DUF1415 K09941 K09941; uncharacterized protein D Shew_1282 conserved hypothetical protein K09954 K09954; uncharacterized protein D Shew_0438 GumN family protein K09973 K09973; uncharacterized protein D Shew_2168 uncharacterized conserved protein UCP025560 K09978 K09978; uncharacterized protein D Shew_0624 conserved hypothetical protein K09980 K09980; uncharacterized protein D Shew_1551 conserved hypothetical protein K09986 K09986; uncharacterized protein D Shew_0618 protein of unknown function DUF47 K07220 K07220; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 2, 2024