+F Repair protein KO #

  DNA Repair and Recombination Proteins - Streptococcus thermophilus ND03

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D STND_1459 methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E STND_0993 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E STND_1691 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E STND_1157 Endonuclease III, DNA repair K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D STND_1427 Hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D STND_0599 MutT/NUDIX hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D STND_0140 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D STND_1062 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D STND_0423 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D STND_1761 Deoxyuridinetriphosphatase, putative K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D STND_1459 methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E STND_0993 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E STND_1691 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E STND_0064 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E STND_0620 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E STND_1157 Endonuclease III, DNA repair K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E STND_1484 Exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E STND_1161 Exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E STND_1488 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E STND_1696 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E STND_1682 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E STND_1428 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E STND_1252 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E STND_0944 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E STND_1696 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E STND_1488 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F STND_1807 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F STND_1806 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F STND_1859 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F STND_0137 Probable DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta F STND_1362 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F STND_0006 Transcription-repair coupling factor (Superfamily II helicase) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E STND_0056 Mismatch repair ATPase (MutS family) K03555 mutS; DNA mismatch repair protein MutS E STND_1697 Mismatch repair ATPase (MutS family) K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E STND_0061 DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E STND_0683 LlaKR2I restriction enzyme K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E STND_1154 Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E STND_1153 Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E STND_1134 DNA polymeraDNA polymerase III alphase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E STND_0068 DNA polymerase III polC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E STND_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E STND_0709 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E STND_0487 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E STND_1536 DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E STND_1101 DNA polymerase III, tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E STND_1488 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E STND_0944 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E STND_1687 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E STND_1783 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E STND_1702 ATP-dependent DNA helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E STND_0066 recombinase A K03553 recA; recombination protein RecA E STND_0063 Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E STND_1887 Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E STND_1361 Replication restart DNA helicase PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E STND_1330 ATPase involved in DNA repair K03546 sbcC; DNA repair protein SbcC/Rad50 E STND_1331 DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E STND_0066 recombinase A K03553 recA; recombination protein RecA E STND_1760 DNA repair protein radA K04485 radA; DNA repair protein RadA/Sms E STND_1958 DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF E STND_1661 ATP-dependent DNA helicase recG, transcription-repair coupling factor, putative K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E STND_1161 Exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E STND_0024 DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) E STND_0614 Recombination protein recR K06187 recR; recombination protein RecR E STND_1149 ATPase involved in DNA repair K03631 recN; DNA repair protein RecN (Recombination protein N) E STND_0230 Holliday junction resolvase recU K03700 recU; recombination protein U E STND_0063 Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E STND_1887 Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E STND_1650 ATP-dependent helicase/nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E STND_1651 ATP-dependent helicase/deoxyribonuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E STND_0919 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1 E STND_0659 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1 E STND_1450 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E STND_1330 ATPase involved in DNA repair K03546 sbcC; DNA repair protein SbcC/Rad50 E STND_1331 DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F STND_1229 DNA gyrase A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F STND_1454 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F STND_0872 DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F STND_1145 Histone-like DNA binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F STND_1161 Exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F STND_0024 DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) F STND_0614 Recombination protein recR K06187 recR; recombination protein RecR F STND_1488 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F STND_1682 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F STND_1428 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D STND_1593 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D STND_1306 Nucleotidyltransferase/DNA polymerase involved in DNA repair K03502 umuC; DNA polymerase V D STND_0855 SOS responce UmuC protein K03502 umuC; DNA polymerase V C Other SOS response factors D STND_0066 recombinase A K03553 recA; recombination protein RecA D STND_0867 Putative transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88] D STND_1149 ATPase involved in DNA repair K03631 recN; DNA repair protein RecN (Recombination protein N) D STND_1687 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D STND_1783 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D STND_0367 Regulatory protein recX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D STND_0801 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D STND_1427 Hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D STND_0599 MutT/NUDIX hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D STND_0140 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D STND_1062 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D STND_0423 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D STND_1761 Deoxyuridinetriphosphatase, putative K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D STND_1220 Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D STND_1221 Ribonucleoside-diphosphate reductase class Ib beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D STND_0736 Phosphoesterase, DHH family protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024