+F Repair protein KO #

  DNA Repair and Recombination Proteins - Sulfurifustis variabilis

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D SVA_2374 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E SVA_2662 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E SVA_3698 DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SVA_3299 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E SVA_2761 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D SVA_0065 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SVA_0706 thiamin phosphate synthase superfamily K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SVA_2506 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SVA_2513 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D SVA_2374 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SVA_0086 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E SVA_0266 DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E SVA_0740 DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E SVA_1708 SPO1 DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E SVA_2153 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E SVA_2662 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E SVA_3698 DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SVA_3738 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E SVA_0491 5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E SVA_0791 DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E SVA_3299 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E SVA_2761 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E SVA_3557 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E SVA_0135 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E SVA_0541 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E SVA_1701 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E SVA_1165 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E SVA_3870 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E SVA_3332 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E SVA_1680 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E SVA_1709 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E SVA_3878 DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SVA_3870 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E SVA_1165 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F SVA_3366 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F SVA_3365 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F SVA_3335 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F SVA_0094 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F SVA_2029 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E SVA_1591 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E SVA_2474 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E SVA_1643 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SVA_0002 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E SVA_1090 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E SVA_0601 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E SVA_1871 DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E SVA_0635 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SVA_1322 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SVA_1600 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E SVA_1165 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E SVA_3878 DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SVA_3330 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SVA_3068 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E SVA_0997 exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E SVA_0996 exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E SVA_0998 exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E SVA_1449 recombinase RecA K03553 recA; recombination protein RecA E SVA_3319 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SVA_3318 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SVA_3320 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E SVA_0071 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E SVA_1449 recombinase RecA K03553 recA; recombination protein RecA E SVA_1913 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E SVA_0097 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E SVA_1701 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E SVA_1671 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E SVA_1602 recombinase RecR K06187 recR; recombination protein RecR E SVA_2439 recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E SVA_3319 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SVA_3318 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SVA_3320 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E SVA_0467 ATP-binding protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E SVA_1769 DNA repair protein K10979 ku; DNA end-binding protein Ku E SVA_1768 DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F SVA_2077 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SVA_0003 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F SVA_0025 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F SVA_3067 DNA recombinase K07455 recT; recombination protein RecT F SVA_1701 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F SVA_1671 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F SVA_1602 recombinase RecR K06187 recR; recombination protein RecR F SVA_1165 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F SVA_3831 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F SVA_1689 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F SVA_2068 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F SVA_2663 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SVA_3332 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F SVA_1680 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D SVA_0524 repressor K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D SVA_1449 recombinase RecA K03553 recA; recombination protein RecA D SVA_0745 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D SVA_2439 recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D SVA_2805 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D SVA_0746 CDP-6-deoxy-delta-3,4-glucoseen reductase K14160 imuA; protein ImuA D SVA_0747 DNA repair nucleotidyltransferase K14161 imuB; protein ImuB D SVA_0773 DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D SVA_3330 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SVA_3068 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SVA_1450 RecX family transcriptional regulator K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D SVA_2977 DNA polymerase III K02347 polX; DNA polymerase (family X) C DNA helicases D SVA_1087 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D SVA_2371 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D SVA_1432 helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D SVA_0776 ATP-dependent DNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D SVA_0065 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SVA_0706 thiamin phosphate synthase superfamily K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SVA_2506 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SVA_2513 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D SVA_3603 NrdJa K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SVA_3055 ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SVA_3056 ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SVA_2982 ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024