+E Ribosome biogenesis KO
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Ribosome Biogenesis - Thermus aquaticus
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C TO73_1999 GTP-binding protein Era K03595 era; GTPase
C TO73_0216 GTP-binding protein Obg K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C TO73_0689 transcription termination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
C TO73_0752 transcription termination protein NusB K03625 nusB; transcription antitermination protein NusB
C TO73_0083 transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D TO73_2064 ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D TO73_1575 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D TO73_1690 ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D TO73_1770 ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D TO73_1085 ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D TO73_1280 ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D TO73_2391 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D TO73_1221 rRNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D TO73_2382 rRNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D TO73_1358 RNA binding methyltransferase FtsJ like K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D TO73_2283 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D TO73_0141 LSU m3Psi1915 methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D TO73_1607 LSU m5C1962 methyltransferase RlmI K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D TO73_2003 LSU m5C1962 methyltransferase RlmI K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D TO73_2351 ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D TO73_1358 RNA binding methyltransferase FtsJ like K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D TO73_0588 tRNA (uracil(54)-C5)-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D TO73_2021 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D TO73_1790 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C TO73_1118 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C TO73_1300 ribosomal protein S12p Asp88 methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C TO73_2407 ribosomal protein L11 methyltransferase E K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C TO73_0303 putative Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C TO73_1897 DEAD-box ATP-dependent RNA helicase CshA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C TO73_1999 GTP-binding protein Era K03595 era; GTPase
C TO73_0546 GTP-binding protein EngA K03977 engA; GTPase
C TO73_0216 GTP-binding protein Obg K03979 obgE; GTPase [EC:3.6.5.-]
C TO73_1401 GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C TO73_1479 TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C TO73_0147 GTP pyrophosphokinase (pppGpp) synthetase II K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C TO73_0715 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C TO73_0690 transcription termination protein NusA-like protein K09748 rimP; ribosome maturation factor RimP
C TO73_0220 ribosomal silencing factor RsfA (former Iojap) K09710 ybeB; ribosome-associated protein
C TO73_0706 metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly K07042 ybeY; probable rRNA maturation factor
C TO73_1723 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
C TO73_1312 GTP-binding and nucleic acid-binding protein YchF K06942 ychF; ribosome-binding ATPase
C TO73_0666 ribosomal protein L32p-like protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024