+E Ribosome biogenesis KO
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Ribosome Biogenesis - Thermococcus barophilus
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
D TERMP_01303 rRNA biogenesis Nop5/Nop56-like protein K14564 NOP56; nucleolar protein 56
C Box H/ACA snoRNPs
D TERMP_00124 tRNA pseudouridine 55 synthase K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
D TERMP_00377 ribosome biogenesis Nop10-like protein K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
B 90S particles
C U3 small nucleolar RNA-associated proteins
D TERMP_00167 brix-domain ribosomal biogenesis protein K14561 IMP4; U3 small nucleolar ribonucleoprotein protein IMP4
C Helicases
C GTPase
C RNase
C Kinase
C Other 90S particles
D TERMP_00041 N1-specific pseudouridine methyltransferase NEP1 K14568 EMG1; rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260]
D TERMP_00500 RNA-binding protein K06961 KRR1; ribosomal RNA assembly protein
B Pre-40S particles
C Kinases
D TERMP_00501 hypothetical protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D TERMP_00949 hypothetical protein K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
D TERMP_00572 AMP/CMP kinase K18532 AK6; adenylate kinase [EC:2.7.4.3]
C Other pre-40S particles
D TERMP_00675 RNase L inhibitor K06174 ABCE1; ATP-binding cassette, sub-family E, member 1
B Pre-60S particles
C Helicases
C GTPases
D TERMP_00703 GTP-binding protein K06943 NOG1; nucleolar GTP-binding protein
C RNases
D RNase MRP
E TERMP_00100 ribonuclease P protein component 1 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
E TERMP_00159 ribonuclease P protein component 2 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
E TERMP_00156 ribonuclease P protein component 3 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
C Kinases
D TERMP_02001 hypothetical protein K06947 GRC3; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-]
C Export and cytoplasmic maturation factors
D TERMP_01090 eukaryotic translation initiation factor 6 K03264 EIF6; translation initiation factor 6
D TERMP_02183 hypothetical protein K07562 NMD3; 60S ribosomal export protein NMD3
D TERMP_00161 hypothetical protein K14574 SDO1; ribosome maturation protein SDO1
C 5-FMC complex
C Ribosome quality control proteins
D TERMP_01274 cell division FtsH-like protein K13525 VCP; transitional endoplasmic reticulum ATPase
D TERMP_01112 cell division protein FtsH K13525 VCP; transitional endoplasmic reticulum ATPase
C Other pre-60S particles
D TERMP_01709 predicted RNA-binding protein involved in ribosomal biogenesis K07565 NIP7; 60S ribosome subunit biogenesis protein NIP7
B Other ribosome biogenesis factors
C TERMP_00798 GTP-binding Era-like protein K03595 era; GTPase
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
D TERMP_01303 rRNA biogenesis Nop5/Nop56-like protein K14564 NOP56; nucleolar protein 56
D TERMP_01302 fibrillarin K04795 flpA; fibrillarin-like pre-rRNA processing protein
D TERMP_01118 LSU ribosomal protein L7Ae K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
C Box H/ACA snoRNPs
D TERMP_00124 tRNA pseudouridine 55 synthase K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
D TERMP_00822 gar1-like small nucleolar rnp K07569 gar1; RNA-binding protein
D TERMP_00377 ribosome biogenesis Nop10-like protein K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
B rRNA transcription factors
C TERMP_00245 NusA-like protein K02600 nusA; transcription termination/antitermination protein NusA
B rRNA modification factors
C 16S rRNA modification factors
D TERMP_00391 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D TERMP_01003 ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D TERMP_01622 tRNA/RNA cytosine-C5-methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
C 23S rRNA modification factors
D TERMP_01666 LSU methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D TERMP_01125 TrmA-like RNA methyltransferase K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
B ribosomal protein modification factors
C TERMP_00920 ribosomal-protein-S18p-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
B rRNA processing factors
B rRNA helicases
C TERMP_01196 cold-shock DEAD-box protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C TERMP_00798 GTP-binding Era-like protein K03595 era; GTPase
C TERMP_01562 GTP-binding HflX-like protein K03665 hflX; GTPase
B Other maturation factors
C TERMP_01070 putative YrdC/Sua5 protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C TERMP_01094 hypothetical protein K07574 yhbY; RNA-binding protein
C TERMP_00325 GTP-binding and nucleic acid-binding protein YchF K06942 ychF; ribosome-binding ATPase
C TERMP_00932 hypothetical protein K22469 fau-1; probable ribonuclease FAU-1 [EC:3.1.26.-]
#
ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024