+D GENES KO #

  KEGG Orthology (KO) - Thiomicrospira cyclica

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:tcy00010] D Thicy_1318 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Thicy_0223 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Thicy_0357 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D Thicy_1238 Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Thicy_0092 fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thicy_0635 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Thicy_0089 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Thicy_0090 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Thicy_0255 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Thicy_0711 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Thicy_0091 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Thicy_1283 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Thicy_0699 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Thicy_0700 Dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Thicy_1236 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thicy_0701 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thicy_0872 Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Thicy_0054 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Thicy_0652 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Thicy_0079 Aldose 1-epimerase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15] C 00020 Citrate cycle (TCA cycle) [PATH:tcy00020] D Thicy_0177 Citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1] D Thicy_0664 aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Thicy_0053 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Thicy_1236 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thicy_0701 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thicy_1126 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Thicy_1127 Succinyl-CoA ligase (ADP-forming) subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Thicy_0877 succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Thicy_0878 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Thicy_0875 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Thicy_0876 hypothetical protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Thicy_1047 Fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D Thicy_0699 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Thicy_0700 Dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:tcy00030] D Thicy_0223 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Thicy_0754 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Thicy_0755 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31] D Thicy_0753 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D Thicy_0098 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Thicy_0088 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Thicy_0435 Ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D Thicy_0054 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Thicy_0652 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Thicy_1378 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Thicy_0019 3-oxoacyl-(acyl-carrier-protein) reductase K00034 gdh; glucose 1-dehydrogenase [EC:1.1.1.47] D Thicy_0092 fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thicy_1238 Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Thicy_0357 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] C 00040 Pentose and glucuronate interconversions [PATH:tcy00040] D Thicy_0224 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Thicy_0222 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Thicy_0098 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Thicy_0729 Carbohydrate kinase, FGGY K22935 XK1; D-ribulokinase [EC:2.7.1.47] C 00051 Fructose and mannose metabolism [PATH:tcy00051] D Thicy_1049 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Thicy_0652 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Thicy_1577 mannosyl-3-phosphoglycerate phosphatase family K07026 E3.1.3.70; mannosyl-3-phosphoglycerate phosphatase [EC:3.1.3.70] D Thicy_0357 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D Thicy_1238 Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Thicy_1233 Ketohexokinase K00846 KHK; ketohexokinase [EC:2.7.1.3] D Thicy_0092 fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thicy_0635 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 00052 Galactose metabolism [PATH:tcy00052] D Thicy_0906 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Thicy_0909 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Thicy_0222 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Thicy_0054 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Thicy_0652 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Thicy_1318 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Thicy_0357 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] C 00053 Ascorbate and aldarate metabolism D Thicy_0224 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] C 00500 Starch and sucrose metabolism [PATH:tcy00500] D Thicy_0222 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Thicy_1317 Glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D Thicy_1313 Glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] D Thicy_1314 1,4-alpha-glucan-branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D Thicy_1312 glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D Thicy_1315 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D Thicy_0054 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Thicy_0652 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Thicy_1318 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Thicy_0223 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Thicy_1049 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:tcy00520] D Thicy_1121 Beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D Thicy_1049 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Thicy_0005 Glucosamine--fructose-6-phosphate aminotransferase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Thicy_0634 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D Thicy_1605 Bifunctional protein glmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D Thicy_1190 Anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D Thicy_0822 HAD-superfamily hydrolase, subfamily IA, variant 1 K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105] D Thicy_1265 aminoglycoside phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221] D Thicy_1264 Nucleotidyl transferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99] D Thicy_0477 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Thicy_1120 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Thicy_1318 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Thicy_0054 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Thicy_0652 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Thicy_0222 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Thicy_0224 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Thicy_0906 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Thicy_0909 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Thicy_0223 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Thicy_0055 oxidoreductase FAD/NAD(P)-binding domain protein K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1] D Thicy_1317 Glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] C 00620 Pyruvate metabolism [PATH:tcy00620] D Thicy_0872 Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Thicy_0699 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Thicy_0700 Dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Thicy_1236 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thicy_0701 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thicy_0091 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Thicy_0707 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D Thicy_0396 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Thicy_0395 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D Thicy_0625 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D Thicy_1457 D-lactate dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D Thicy_0442 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D Thicy_0687 Hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D Thicy_1220 beta-lactamase-like protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D Thicy_1047 Fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D Thicy_1240 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D Thicy_1283 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Thicy_0226 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:tcy00630] D Thicy_0872 Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Thicy_0177 Citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1] D Thicy_0664 aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Thicy_1150 HAD-superfamily hydrolase, subfamily IA, variant 1 K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Thicy_0099 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Thicy_1565 Ribulose bisphosphate carboxylase large chain K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] D Thicy_1564 Ribulose-bisphosphate carboxylase K01602 rbcS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] D Thicy_1277 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thicy_1042 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Thicy_1236 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thicy_0701 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thicy_0295 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Thicy_1574 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D Thicy_0057 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] C 00640 Propanoate metabolism [PATH:tcy00640] D Thicy_0872 Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Thicy_1236 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thicy_0701 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thicy_0707 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D Thicy_0396 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Thicy_0395 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D Thicy_0625 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D Thicy_1127 Succinyl-CoA ligase (ADP-forming) subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Thicy_1126 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Thicy_0664 aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] C 00650 Butanoate metabolism [PATH:tcy00650] D Thicy_0877 succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Thicy_0878 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Thicy_0875 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Thicy_0876 hypothetical protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Thicy_0297 Succinate-semialdehyde dehydrogenase (NAD(P)(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Thicy_1411 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D Thicy_1179 Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Thicy_1658 Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Thicy_0249 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Thicy_0250 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:tcy00660] D Thicy_1179 Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Thicy_1658 Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Thicy_0249 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Thicy_0250 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Thicy_1127 Succinyl-CoA ligase (ADP-forming) subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Thicy_1126 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Thicy_0616 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Thicy_0617 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Thicy_0618 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:tcy00562] D Thicy_0229 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Thicy_0486 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Thicy_0635 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:tcy00190] D Thicy_0637 NAD(P)H-quinone oxidoreductase subunit 3 K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D Thicy_0638 NAD(P)H-quinone oxidoreductase subunit K K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D Thicy_0639 NAD(P)H-quinone oxidoreductase subunit J K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D Thicy_0640 NAD(P)H-quinone oxidoreductase subunit H K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D Thicy_0641 NADH-quinone oxidoreductase, E subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D Thicy_0642 NADH-quinone oxidoreductase, F subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D Thicy_0643 NADH-quinone oxidoreductase, chain G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D Thicy_0644 NAD(P)H-quinone oxidoreductase subunit 1 K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D Thicy_0645 NAD(P)H-quinone oxidoreductase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D Thicy_0646 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D Thicy_0647 NAD(P)H-quinone oxidoreductase subunit 4L K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D Thicy_0648 proton-translocating NADH-quinone oxidoreductase, chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D Thicy_0649 proton-translocating NADH-quinone oxidoreductase, chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D Thicy_0650 NAD(P)H-quinone oxidoreductase subunit 2 K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D Thicy_0877 succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Thicy_0878 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Thicy_0875 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Thicy_0876 hypothetical protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Thicy_0482 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D Thicy_0483 Cytochrome b/b6 domain protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D Thicy_0484 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D Thicy_1535 cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D Thicy_1534 cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D Thicy_1532 cytochrome c class I K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D Thicy_1609 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Thicy_1607 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Thicy_1608 ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Thicy_1610 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D Thicy_1606 ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Thicy_1613 ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Thicy_1611 ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Thicy_1612 ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Thicy_1239 Inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D Thicy_0280 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D Thicy_0302 polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms [PATH:tcy00710] D Thicy_1565 Ribulose bisphosphate carboxylase large chain K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] D Thicy_1564 Ribulose-bisphosphate carboxylase K01602 rbcS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] D Thicy_0090 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Thicy_0089 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Thicy_0092 fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thicy_1238 Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Thicy_0088 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Thicy_0435 Ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D Thicy_1648 Phosphoribulokinase K00855 PRK; phosphoribulokinase [EC:2.7.1.19] D Thicy_0635 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Thicy_0098 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Thicy_1240 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:tcy00680] D Thicy_1042 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Thicy_0711 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Thicy_1240 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D Thicy_0092 fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thicy_1238 Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Thicy_0357 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D Thicy_0872 Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Thicy_1283 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Thicy_0255 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Thicy_1298 Phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Thicy_0819 Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Thicy_0450 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 00910 Nitrogen metabolism [PATH:tcy00910] D Thicy_0778 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15576 nrtA; nitrate/nitrite transport system substrate-binding protein D Thicy_0779 ABC-type transporter, integral membrane subunit K15577 nrtB; nitrate/nitrite transport system permease protein D Thicy_0780 nitrate ABC transporter, ATPase subunits C and D K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4] D Thicy_0784 Nitrate reductase K00372 nasC; assimilatory nitrate reductase catalytic subunit [EC:1.7.99.-] D Thicy_0781 Nitrite reductase (NAD(P)H) K26139 nasD; nitrite reductase [NAD(P)H] large subunit [EC:1.7.1.4] D Thicy_0782 nitrite reductase (NAD(P)H), large subunit K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15] D Thicy_0783 nitrite reductase (NAD(P)H), small subunit K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15] D Thicy_0254 Glutamate dehydrogenase (NADP(+)) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D Thicy_1277 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thicy_0253 Glutamate synthase (ferredoxin) K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Thicy_0252 glutamate synthase, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] C 00920 Sulfur metabolism [PATH:tcy00920] D Thicy_0431 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D Thicy_0216 sulfur oxidation protein SoxA K17222 soxA; L-cysteine S-thiosulfotransferase [EC:2.8.5.2] D Thicy_0219 cytochrome c, class I K17223 soxX; L-cysteine S-thiosulfotransferase [EC:2.8.5.2] D Thicy_0218 sulfur oxidation protein SoxY-like protein K17226 soxY; sulfur-oxidizing protein SoxY D Thicy_0217 sulfur oxidation protein SoxZ K17227 soxZ; sulfur-oxidizing protein SoxZ D Thicy_0833 5'-Nucleotidase domain-containing protein K17224 soxB; S-sulfosulfanyl-L-cysteine sulfohydrolase [EC:3.1.6.20] D Thicy_0050 Nitrate reductase (NADH) K17225 soxC; sulfane dehydrogenase subunit SoxC D Thicy_0051 hypothetical protein K22622 soxD; S-disulfanyl-L-cysteine oxidoreductase SoxD [EC:1.8.2.6] D Thicy_0278 NADPH--hemoprotein reductase K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D Thicy_0064 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4] D Thicy_1132 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4] D Thicy_0004 Flavocytochrome c sulphide dehydrogenase flavin-binding protein K17229 fccB; sulfide dehydrogenase [flavocytochrome c] flavoprotein chain [EC:1.8.2.3] D Thicy_0003 hypothetical protein K17230 fccA; cytochrome subunit of sulfide dehydrogenase D Thicy_0231 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Thicy_0334 Homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D Thicy_0629 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:tcy00061] D Thicy_0707 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D Thicy_0396 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Thicy_0395 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D Thicy_0625 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D Thicy_1142 Acyl carrier protein K02078 acpP; acyl carrier protein D Thicy_1144 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Thicy_1145 3-oxoacyl-(acyl-carrier-protein) synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Thicy_0266 Beta-ketoacyl-acyl-carrier-protein synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Thicy_1141 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Thicy_1143 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Thicy_0265 3-hydroxydecanoyl-(acyl-carrier-protein) dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D Thicy_0961 (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Thicy_0857 Enoyl-(acyl-carrier-protein) reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00062 Fatty acid elongation C 00071 Fatty acid degradation D Thicy_1635 Acyl-(acyl-carrier-protein)--phospholipid O-acyltransferase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:tcy00561] D Thicy_1574 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D Thicy_1146 Phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Thicy_1362 Glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Thicy_1184 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 00564 Glycerophospholipid metabolism [PATH:tcy00564] D Thicy_0259 Glycerol-3-phosphate dehydrogenase (NAD(P)+) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D Thicy_1362 Glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Thicy_1184 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Thicy_0908 glycerol-3-phosphate cytidylyltransferase K00980 tagD; glycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39] D Thicy_0927 cytidyltransferase-related domain protein K00980 tagD; glycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39] D Thicy_0924 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D Thicy_1635 Acyl-(acyl-carrier-protein)--phospholipid O-acyltransferase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20] D Thicy_0966 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D Thicy_0225 CDP-diacylglycerol/serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Thicy_0675 Phosphatidylserine decarboxylase proenzyme K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D Thicy_0763 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D Thicy_0677 Phosphatidylglycerophosphatase K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids D Thicy_1066 Lysophospholipase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:tcy00230] D Thicy_0803 nucleoside diphosphate pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D Thicy_0430 NUDIX hydrolase K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-] D Thicy_0054 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Thicy_0652 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Thicy_1378 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Thicy_0628 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Thicy_0390 Phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D Thicy_0592 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Thicy_0012 Phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21] D Thicy_0834 Phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D Thicy_0593 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D Thicy_1329 phosphoribosylaminoimidazole carboxylase, ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D Thicy_1328 phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D Thicy_0096 Phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D Thicy_0663 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Thicy_0391 Bifunctional purine biosynthesis protein purH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Thicy_1641 Adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Thicy_0714 Multifunctional protein surE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Thicy_0429 HAD-superfamily hydrolase, subfamily IA, variant 3 K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-] D Thicy_0443 UPF0345 protein yaiE K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D Thicy_0693 Multi-copper polyphenol oxidoreductase, laccase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Thicy_0454 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Thicy_0234 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Thicy_1550 Nucleoside-triphosphatase rdgB K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D Thicy_0024 Nucleoside-triphosphatase rdgB K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D Thicy_0455 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Thicy_0076 Guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D Thicy_1193 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Thicy_1194 ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D Thicy_0523 Deoxyguanosinetriphosphate triphosphohydrolase-like protein K01129 dgt; dGTPase [EC:3.1.5.1] D Thicy_0044 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Thicy_0279 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D Thicy_0757 (p)ppGpp synthetase I, SpoT/RelA K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5] D Thicy_0750 adenylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D Thicy_0517 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Thicy_1472 Conserved hypothetical protein CHP00730 K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D Thicy_0020 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Thicy_1270 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41] C 00240 Pyrimidine metabolism [PATH:tcy00240] D Thicy_1053 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Thicy_1054 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Thicy_0320 Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Thicy_0298 Allantoinase K01465 URA4; dihydroorotase [EC:3.5.2.3] D Thicy_0319 dihydroorotase, multifunctional complex type K01465 URA4; dihydroorotase [EC:3.5.2.3] D Thicy_0261 dihydroorotate dehydrogenase family protein K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14] D Thicy_0277 Orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D Thicy_0810 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D Thicy_0969 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D Thicy_0234 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Thicy_0602 Septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D Thicy_0709 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D Thicy_0814 Cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D Thicy_0714 Multifunctional protein surE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Thicy_0443 UPF0345 protein yaiE K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D Thicy_0321 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D Thicy_1472 Conserved hypothetical protein CHP00730 K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D Thicy_0590 Deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D Thicy_1193 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Thicy_1194 ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D Thicy_1137 Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D Thicy_0284 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Thicy_0315 Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:tcy00250] D Thicy_1437 Aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Thicy_0890 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D Thicy_0736 Asparaginase/glutaminase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D Thicy_0210 asparagine synthase family amidotransferase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Thicy_0676 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Thicy_1633 Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Thicy_0517 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Thicy_0663 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Thicy_0320 Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Thicy_0297 Succinate-semialdehyde dehydrogenase (NAD(P)(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Thicy_0253 Glutamate synthase (ferredoxin) K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Thicy_0252 glutamate synthase, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Thicy_0254 Glutamate dehydrogenase (NADP(+)) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D Thicy_1277 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thicy_1053 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Thicy_1054 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Thicy_0005 Glucosamine--fructose-6-phosphate aminotransferase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Thicy_0628 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:tcy00260] D Thicy_0505 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Thicy_0620 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Thicy_0719 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Thicy_0052 Homoserine kinase K02204 thrB2; homoserine kinase type II [EC:2.7.1.39] D Thicy_0721 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D Thicy_1042 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Thicy_1574 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D Thicy_0255 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Thicy_1298 Phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Thicy_0819 Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Thicy_0450 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D Thicy_1236 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thicy_0701 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thicy_0295 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Thicy_0225 CDP-diacylglycerol/serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Thicy_1069 threonine dehydratase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Thicy_0624 Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Thicy_0623 Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D Thicy_0609 diaminobutyrate/2-oxoglutarate aminotransferase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] D Thicy_0608 L-2,4-diaminobutyric acid acetyltransferase K06718 ectA; L-2,4-diaminobutyric acid acetyltransferase [EC:2.3.1.178] D Thicy_0610 L-ectoine synthase K06720 ectC; L-ectoine synthase [EC:4.2.1.108] C 00270 Cysteine and methionine metabolism [PATH:tcy00270] D Thicy_0231 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Thicy_0018 Cystathionine beta-lyase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Thicy_0037 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Thicy_0387 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D Thicy_1332 S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Thicy_0105 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Thicy_0106 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D Thicy_0013 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D Thicy_0693 Multi-copper polyphenol oxidoreductase, laccase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Thicy_0014 quorum-sensing autoinducer 2 (AI-2), LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D Thicy_1098 putative D-cysteine desulfhydrase, DcyD K01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7] D Thicy_0505 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Thicy_0620 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Thicy_0719 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Thicy_0334 Homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D Thicy_1489 O-acetylhomoserine/O-acetylserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D Thicy_0629 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] D Thicy_1306 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Thicy_1338 glutamate/cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D Thicy_0325 Glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3] D Thicy_1437 Aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Thicy_0748 cysteine synthase B K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144] D Thicy_1298 Phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Thicy_0819 Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:tcy00280] D Thicy_1306 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Thicy_1236 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thicy_0701 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thicy_1411 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:tcy00290] D Thicy_1069 threonine dehydratase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Thicy_0616 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Thicy_0617 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Thicy_0618 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D Thicy_1179 Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Thicy_1658 Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Thicy_0249 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Thicy_0250 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Thicy_0251 Ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Thicy_0214 Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Thicy_1306 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Thicy_0226 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:tcy00300] D Thicy_0719 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Thicy_0505 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Thicy_0620 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Thicy_0836 Dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Thicy_1055 Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D Thicy_1114 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D Thicy_1307 Acetylornithine/succinyldiaminopimelate aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Thicy_1116 Succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Thicy_0370 Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Thicy_0151 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Thicy_1347 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Thicy_1346 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:tcy00310] D Thicy_1236 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thicy_0701 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thicy_0297 Succinate-semialdehyde dehydrogenase (NAD(P)(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Thicy_1257 D-amino-acid transaminase K00824 dat; D-alanine transaminase [EC:2.6.1.21] C 00220 Arginine biosynthesis [PATH:tcy00220] D Thicy_1308 Ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D Thicy_0676 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Thicy_1633 Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Thicy_1277 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thicy_0254 Glutamate dehydrogenase (NADP(+)) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D Thicy_1437 Aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Thicy_0213 amino-acid N-acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1] D Thicy_0206 Arginine biosynthesis bifunctional protein ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D Thicy_0275 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D Thicy_0175 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D Thicy_1307 Acetylornithine/succinyldiaminopimelate aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] C 00330 Arginine and proline metabolism [PATH:tcy00330] D Thicy_1450 Lysine decarboxylase K01584 adiA; arginine decarboxylase [EC:4.1.1.19] D Thicy_0106 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D Thicy_0105 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Thicy_0336 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D Thicy_0169 Glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Thicy_1383 Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D Thicy_0032 proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D Thicy_1437 Aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Thicy_1257 D-amino-acid transaminase K00824 dat; D-alanine transaminase [EC:2.6.1.21] C 00340 Histidine metabolism [PATH:tcy00340] D Thicy_0478 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D Thicy_0516 ATP phosphoribosyltransferase regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit D Thicy_1540 Phosphoribosyl-ATP pyrophosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31] D Thicy_1470 Phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] D Thicy_1538 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino) imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D Thicy_1537 Imidazole glycerol phosphate synthase subunit hisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D Thicy_1539 Imidazole glycerol phosphate synthase subunit hisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D Thicy_1536 Imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D Thicy_0817 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Thicy_0480 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Thicy_0479 Histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] C 00350 Tyrosine metabolism [PATH:tcy00350] D Thicy_1437 Aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Thicy_0817 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Thicy_0480 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Thicy_0922 HpcH/HpaI aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52] D Thicy_0297 Succinate-semialdehyde dehydrogenase (NAD(P)(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00360 Phenylalanine metabolism [PATH:tcy00360] D Thicy_1437 Aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Thicy_0817 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Thicy_0480 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Thicy_1257 D-amino-acid transaminase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D Thicy_0354 Catalase-peroxidase K03782 katG; catalase-peroxidase [EC:1.11.1.21] D Thicy_0923 pyruvate carboxyltransferase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] C 00380 Tryptophan metabolism [PATH:tcy00380] D Thicy_1236 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thicy_0701 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thicy_0354 Catalase-peroxidase K03782 katG; catalase-peroxidase [EC:1.11.1.21] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:tcy00400] D Thicy_1033 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Thicy_0078 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D Thicy_0397 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D Thicy_0048 Shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D Thicy_0077 Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D Thicy_0815 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D Thicy_0440 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D Thicy_0100 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Thicy_0101 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Thicy_0102 Anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D Thicy_0622 Phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D Thicy_0103 Indole-3-glycerol-phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D Thicy_0624 Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Thicy_0623 Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D Thicy_0818 chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] D Thicy_0816 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D Thicy_1437 Aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Thicy_0817 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Thicy_0480 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:tcy00410] D Thicy_1241 Aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D Thicy_1242 Pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] C 00430 Taurine and hypotaurine metabolism D Thicy_0294 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:tcy00450] D Thicy_0018 Cystathionine beta-lyase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Thicy_0037 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Thicy_0387 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D Thicy_0198 cysteine desulfurase, SufS subfamily K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D Thicy_0984 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Thicy_0368 Selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D Thicy_0588 Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:tcy00460] D Thicy_0294 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Thicy_0736 Asparaginase/glutaminase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D Thicy_1042 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:tcy00470] D Thicy_0804 Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Thicy_1257 D-amino-acid transaminase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D Thicy_0200 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Thicy_1344 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Thicy_0370 Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Thicy_0151 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] C 00480 Glutathione metabolism [PATH:tcy00480] D Thicy_0294 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Thicy_1338 glutamate/cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D Thicy_0325 Glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3] D Thicy_1433 cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Thicy_0355 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D Thicy_1107 Glutathione S-transferase domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Thicy_0071 Glutathione-disulfide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7] D Thicy_0053 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Thicy_0753 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D Thicy_0754 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Thicy_0070 glutaredoxin domain protein region K24136 pgdX; glutathione-dependent peroxiredoxin [EC:1.11.1.27] D Thicy_0106 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis [PATH:tcy00540] D Thicy_0960 Acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D Thicy_0203 UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D Thicy_0962 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D Thicy_0680 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D Thicy_0959 Lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D Thicy_1089 Tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D Thicy_1322 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D Thicy_0710 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D Thicy_0466 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D Thicy_0073 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Thicy_1087 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Thicy_0072 Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Thicy_1323 Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Thicy_0950 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Thicy_1588 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Thicy_1321 Lipid A 3-O-deacylase-related protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-] D Thicy_1319 sugar isomerase (SIS) K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D Thicy_1320 Bifunctional protein hldE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D Thicy_1185 histidinol-phosphate phosphatase family protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D Thicy_0946 ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D Thicy_0943 lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D Thicy_0937 O-antigen polymerase K02847 waaL; O-antigen ligase [EC:2.4.99.26] C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:tcy00541] D Thicy_0222 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Thicy_0906 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Thicy_0909 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Thicy_0224 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Thicy_0976 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Thicy_0978 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Thicy_0977 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Thicy_0055 oxidoreductase FAD/NAD(P)-binding domain protein K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1] D Thicy_1605 Bifunctional protein glmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] C 00550 Peptidoglycan biosynthesis [PATH:tcy00550] D Thicy_0477 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Thicy_1120 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Thicy_0199 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Thicy_1344 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Thicy_1347 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Thicy_0200 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Thicy_1346 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Thicy_0967 Undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Thicy_1365 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Thicy_1345 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Thicy_1342 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Thicy_0021 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Thicy_1254 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Thicy_1348 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Thicy_1256 Beta-lactamase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] C 00552 Teichoic acid biosynthesis [PATH:tcy00552] D Thicy_1365 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Thicy_0930 hypothetical protein K21285 tagB; teichoic acid glycerol-phosphate primase [EC:2.7.8.44] D Thicy_0925 CDP-glycerol glycerophosphotransferase K09809 tagF; CDP-glycerol glycerophosphotransferase [EC:2.7.8.12] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:tcy00543] D Thicy_0231 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:tcy00730] D Thicy_1595 Phosphomethylpyrimidine synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D Thicy_1297 phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D Thicy_1596 FAD dependent oxidoreductase K03153 thiO; glycine oxidase [EC:1.4.3.19] D Thicy_1598 Thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10] D Thicy_1296 Thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D Thicy_1035 thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D Thicy_0245 ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Thicy_0020 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:tcy00740] D Thicy_1038 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Thicy_1040 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Thicy_1037 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D Thicy_1039 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D Thicy_1177 riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D Thicy_0803 nucleoside diphosphate pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] C 00750 Vitamin B6 metabolism [PATH:tcy00750] D Thicy_1182 Pyridoxine/pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D Thicy_1405 Erythronate-4-phosphate dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290] D Thicy_0819 Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Thicy_1268 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D Thicy_0882 Pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D Thicy_0721 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:tcy00760] D Thicy_0890 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D Thicy_1025 quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72] D Thicy_0694 nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D Thicy_0714 Multifunctional protein surE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Thicy_1382 nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D Thicy_1125 NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D Thicy_0501 CinA domain protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D Thicy_0545 Silent information regulator protein Sir2 K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D Thicy_1059 inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D Thicy_0297 Succinate-semialdehyde dehydrogenase (NAD(P)(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:tcy00770] D Thicy_1179 Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Thicy_1658 Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Thicy_0249 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Thicy_0250 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Thicy_0251 Ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Thicy_0214 Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Thicy_1243 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D Thicy_1242 Pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D Thicy_0264 putative transcriptional acitvator, Baf family K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D Thicy_0155 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D Thicy_0272 Phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D Thicy_0208 Dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D Thicy_0881 Holo-(acyl-carrier-protein) synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D Thicy_1306 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Thicy_1241 Aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] C 00780 Biotin metabolism [PATH:tcy00780] D Thicy_1567 biotin biosynthesis protein BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197] D Thicy_0266 Beta-ketoacyl-acyl-carrier-protein synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Thicy_1141 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Thicy_1143 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Thicy_0961 (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Thicy_0857 Enoyl-(acyl-carrier-protein) reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Thicy_1568 Carboxylesterase K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85] D Thicy_1571 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D Thicy_0107 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D Thicy_0095 Dethiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D Thicy_1572 Biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D Thicy_0263 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:tcy00785] D Thicy_1259 Octanoyltransferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D Thicy_1260 Lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D Thicy_1236 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thicy_0701 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thicy_0699 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Thicy_0700 Dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Thicy_0295 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:tcy00790] D Thicy_0338 GTP cyclohydrolase I K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16] D Thicy_1363 dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D Thicy_1244 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D Thicy_0633 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D Thicy_0316 Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D Thicy_0626 FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D Thicy_1038 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Thicy_1140 Anthranilate synthase K25578 pabB; 4-amino-4-deoxychorismate synthase (2-amino-4-deoxychorismate-forming) component I [EC:2.6.1.123] D Thicy_1139 aminotransferase class IV K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] D Thicy_0293 Dihydrofolate reductase K13938 folM; dihydromonapterin reductase / dihydrofolate reductase [EC:1.5.1.50 1.5.1.3] D Thicy_1030 queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Thicy_0246 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D Thicy_0615 hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D Thicy_1014 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D Thicy_1624 NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D Thicy_0311 RimK domain protein ATP-grasp K15740 mptN; tetrahydromethanopterin:alpha-L-glutamate ligase [EC:6.3.2.33] D Thicy_0006 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Thicy_0010 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Thicy_0008 molybdopterin biosynthesis MoaE protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D Thicy_0438 molybdenum cofactor synthesis domain protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D Thicy_0009 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Thicy_0787 MoeA domain protein domain I and II K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Thicy_0788 Molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:tcy00670] D Thicy_0316 Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D Thicy_0293 Dihydrofolate reductase K13938 folM; dihydromonapterin reductase / dihydrofolate reductase [EC:1.5.1.50 1.5.1.3] D Thicy_0528 Bifunctional protein folD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D Thicy_1042 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Thicy_0592 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Thicy_0391 Bifunctional purine biosynthesis protein purH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Thicy_1520 Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Thicy_0037 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Thicy_0315 Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D Thicy_0057 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D Thicy_1333 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D Thicy_1163 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:tcy00860] D Thicy_0522 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Thicy_0607 Glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D Thicy_0432 Glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D Thicy_0049 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Thicy_1631 Porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D Thicy_1630 Uroporphyrinogen III synthase HEM4 K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D Thicy_1582 Uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D Thicy_1652 Coproporphyrinogen-III oxidase, aerobic K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D Thicy_1170 oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D Thicy_0654 Uncharacterized protein family UPF0093 K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-] D Thicy_1442 Ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D Thicy_0785 uroporphyrin-III C-methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4] D Thicy_0572 cob(I)alamin adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:tcy00130] D Thicy_0041 Chorismate--pyruvate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40] D Thicy_1603 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D Thicy_1156 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240] D Thicy_0821 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D Thicy_1157 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D Thicy_0365 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D Thicy_0747 UbiA prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:tcy00900] D Thicy_1411 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D Thicy_1409 Hydroxymethylglutaryl-CoA reductase (NADPH) K00021 HMGCR; hydroxymethylglutaryl-CoA reductase (NADPH) [EC:1.1.1.34] D Thicy_1412 GHMP kinase K00869 MVK; mevalonate kinase [EC:2.7.1.36] D Thicy_1413 GHMP kinase K00869 MVK; mevalonate kinase [EC:2.7.1.36] D Thicy_1414 diphosphomevalonate decarboxylase K01597 MVD; diphosphomevalonate decarboxylase [EC:4.1.1.33] D Thicy_1410 Isopentenyl-diphosphate delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D Thicy_1029 Geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D Thicy_0165 Trans-hexaprenyltranstransferase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D Thicy_0967 Undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Thicy_0247 Ste24 endopeptidase K06013 STE24; STE24 endopeptidase [EC:3.4.24.84] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis [PATH:tcy00906] D Thicy_1506 Phytoene synthase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] D Thicy_1507 phytoene desaturase K10027 crtI; phytoene desaturase [EC:1.3.99.26 1.3.99.28 1.3.99.29 1.3.99.31] D Thicy_1505 Lycopene beta and epsilon cyclase K06443 lcyB; lycopene beta-cyclase [EC:5.5.1.19] C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D Thicy_0088 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:tcy00523] D Thicy_0976 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Thicy_0978 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Thicy_0977 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics D Thicy_0976 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis [PATH:tcy00332] D Thicy_0169 Glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Thicy_1383 Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:tcy00261] D Thicy_0505 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Thicy_0620 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Thicy_0836 Dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Thicy_1055 Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:tcy00521] D Thicy_1318 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Thicy_0054 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Thicy_0652 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Thicy_0229 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Thicy_0486 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Thicy_0976 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Thicy_0978 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Thicy_0977 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D Thicy_1318 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis D Thicy_0976 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:tcy00401] D Thicy_0816 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D Thicy_1437 Aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Thicy_0817 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Thicy_0480 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D Thicy_0100 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Thicy_0101 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D Thicy_1144 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Thicy_1143 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Thicy_0857 Enoyl-(acyl-carrier-protein) reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D Thicy_1142 Acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:tcy00999] D Thicy_1332 S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Thicy_0048 Shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation D Thicy_0923 pyruvate carboxyltransferase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] C 00627 Aminobenzoate degradation C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation D Thicy_0923 pyruvate carboxyltransferase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation C 00643 Styrene degradation C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation D Thicy_0923 pyruvate carboxyltransferase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] C 00626 Naphthalene degradation C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:tcy03020] D Thicy_0115 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Thicy_0116 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Thicy_0146 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Thicy_0045 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:tcy03010] D Thicy_0813 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D Thicy_0971 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D Thicy_0128 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D Thicy_0145 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D Thicy_0139 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D Thicy_0809 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D Thicy_0118 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D Thicy_0136 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D Thicy_0179 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D Thicy_0121 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D Thicy_0144 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D Thicy_0117 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D Thicy_0143 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D Thicy_0135 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D Thicy_0860 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D Thicy_0490 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D Thicy_0131 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D Thicy_0808 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D Thicy_0126 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D Thicy_1379 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D Thicy_1360 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D Thicy_0112 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D Thicy_0125 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D Thicy_0122 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D Thicy_0123 ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4 D Thicy_0134 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D Thicy_0137 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D Thicy_0114 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D Thicy_0806 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D Thicy_0113 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D Thicy_0111 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D Thicy_0178 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D Thicy_0132 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D Thicy_0141 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D Thicy_0129 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D Thicy_0147 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D Thicy_0138 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D Thicy_0493 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D Thicy_1426 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D Thicy_0166 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D Thicy_0127 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D Thicy_0124 Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23 D Thicy_0133 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D Thicy_1377 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D Thicy_0167 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D Thicy_0331 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D Thicy_0130 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D Thicy_0140 ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D Thicy_1581 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D Thicy_1147 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D Thicy_0330 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D Thicy_1645 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D Thicy_1427 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D Thicy_0957 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D Thicy_R0007 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thicy_R0019 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thicy_R0010 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thicy_R0022 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thicy_R0023 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Thicy_R0011 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:tcy00970] D Thicy_R0009 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Thicy_R0021 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Thicy_R0032 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Thicy_R0014 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Thicy_R0045 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Thicy_R0017 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Thicy_R0051 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Thicy_R0048 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Thicy_R0029 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Thicy_R0031 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Thicy_R0037 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Thicy_R0050 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Thicy_R0033 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Thicy_R0035 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Thicy_R0004 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Thicy_R0034 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Thicy_R0036 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Thicy_R0018 tRNA-His K14226 tRNA-His; tRNA His D Thicy_R0008 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Thicy_R0020 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Thicy_R0001 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thicy_R0024 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thicy_R0038 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thicy_R0027 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thicy_R0041 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Thicy_R0025 tRNA-Met K14230 tRNA-Met; tRNA Met D Thicy_R0049 tRNA-Met K14230 tRNA-Met; tRNA Met D Thicy_R0047 tRNA-Met K14230 tRNA-Met; tRNA Met D Thicy_R0002 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Thicy_R0016 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Thicy_R0039 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Thicy_R0040 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Thicy_R0013 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Thicy_R0043 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Thicy_R0005 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Thicy_R0012 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Thicy_R0006 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Thicy_R0003 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Thicy_R0026 tRNA-Val K14237 tRNA-Val; tRNA Val D Thicy_R0028 tRNA-Val K14237 tRNA-Val; tRNA Val D Thicy_R0030 tRNA-Val K14237 tRNA-Val; tRNA Val D Thicy_0522 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Thicy_1249 Glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Thicy_1248 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D Thicy_1250 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D Thicy_0683 Glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Thicy_0504 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Thicy_1026 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Thicy_1187 Glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Thicy_1186 Glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Thicy_1429 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Thicy_0979 Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Thicy_0684 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Thicy_0588 Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Thicy_1520 Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Thicy_1397 Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Thicy_1389 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Thicy_1176 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Thicy_0827 Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Thicy_1514 Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Thicy_0601 Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Thicy_0237 Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Thicy_1425 Phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Thicy_1424 Phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Thicy_0262 Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Thicy_0445 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:tcy03060] D Thicy_0142 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Thicy_0109 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Thicy_0636 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Thicy_0987 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Thicy_0986 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D Thicy_0988 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Thicy_1643 Membrane protein oxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase D Thicy_0205 Protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Thicy_0353 SecA DEAD domain protein K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Thicy_0258 Protein-export protein secB K03071 secB; preprotein translocase subunit SecB D Thicy_0489 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Thicy_R0044 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA D Thicy_0268 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Thicy_1542 Sec-independent protein translocase protein tatA/E-like protein K03116 tatA; sec-independent protein translocase protein TatA D Thicy_1543 Sec-independent protein translocase protein tatB-like protein K03117 tatB; sec-independent protein translocase protein TatB D Thicy_1544 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC D Thicy_0886 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D Thicy_1175 Lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:tcy04122] D Thicy_0221 SirA-like domain-containing protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D Thicy_1188 SirA-like domain-containing protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D Thicy_1105 tRNA-specific 2-thiouridylase mnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Thicy_0008 molybdopterin biosynthesis MoaE protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D Thicy_0006 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Thicy_0007 molybdopterin converting factor, subunit 1 K03636 moaD; sulfur-carrier protein D Thicy_0604 UBA/THIF-type NAD/FAD binding protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D Thicy_0010 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Thicy_0438 molybdenum cofactor synthesis domain protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D Thicy_1597 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein C 03050 Proteasome C 03018 RNA degradation [PATH:tcy03018] D Thicy_0698 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D Thicy_1152 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12] D Thicy_0711 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Thicy_0859 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Thicy_0027 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Thicy_1235 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Thicy_1456 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Thicy_1580 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Thicy_0790 RNA-metabolising metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-] D Thicy_1057 Chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK D Thicy_0174 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Thicy_0511 Protein hfq K03666 hfq; host factor-I protein D Thicy_0280 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D Thicy_0302 polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D Thicy_1245 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:tcy03030] D Thicy_0840 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Thicy_0868 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Thicy_1469 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Thicy_0561 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Thicy_0873 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Thicy_1311 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Thicy_1136 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Thicy_1387 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Thicy_1434 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Thicy_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Thicy_0805 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Thicy_1358 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D Thicy_0164 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Thicy_0689 Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Thicy_0958 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Thicy_1586 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Thicy_0732 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:tcy03410] D Thicy_0581 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Thicy_1183 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D Thicy_1584 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D Thicy_0291 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D Thicy_0056 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Thicy_1586 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Thicy_0722 phosphoesterase RecJ domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Thicy_0732 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:tcy03420] D Thicy_1080 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Thicy_0156 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A D Thicy_1436 UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B D Thicy_0760 UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C D Thicy_1578 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Thicy_1586 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Thicy_0732 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:tcy03430] D Thicy_0500 DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS D Thicy_0509 DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL D Thicy_1578 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Thicy_0793 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Thicy_0794 Exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Thicy_0722 phosphoesterase RecJ domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Thicy_0164 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Thicy_0873 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Thicy_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Thicy_1311 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Thicy_1387 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Thicy_1136 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Thicy_0840 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Thicy_0868 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Thicy_1469 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Thicy_0561 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Thicy_1434 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Thicy_0732 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:tcy03440] D Thicy_0722 phosphoesterase RecJ domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Thicy_0164 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Thicy_1646 DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF D Thicy_0883 DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) D Thicy_1309 Recombination protein recR K06187 recR; recombination protein RecR D Thicy_0502 Protein recA K03553 recA; recombination protein RecA D Thicy_1586 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Thicy_1022 Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA D Thicy_1021 Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Thicy_1023 Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Thicy_0042 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Thicy_0526 exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D Thicy_0527 exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D Thicy_0525 exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D Thicy_0873 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Thicy_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Thicy_1311 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Thicy_1387 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Thicy_1136 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Thicy_0840 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Thicy_0868 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Thicy_1469 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Thicy_0561 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Thicy_1434 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Thicy_1443 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:tcy02010] D Thicy_0778 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15576 nrtA; nitrate/nitrite transport system substrate-binding protein D Thicy_0779 ABC-type transporter, integral membrane subunit K15577 nrtB; nitrate/nitrite transport system permease protein D Thicy_0780 nitrate ABC transporter, ATPase subunits C and D K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4] D Thicy_0417 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Thicy_0416 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein D Thicy_0415 molybdate ABC transporter, ATPase subunit K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D Thicy_0407 molybdate ABC transporter, ATPase subunit K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D Thicy_1666 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Thicy_1665 ABC-type transporter, integral membrane subunit K02011 afuB; iron(III) transport system permease protein D Thicy_1667 Fe(3+)-transporting ATPase K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Thicy_0472 toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein D Thicy_0471 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Thicy_0470 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Thicy_0473 hypothetical protein K07122 mlaB; phospholipid transport system transporter-binding protein D Thicy_0469 Sulfate-transporting ATPase K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Thicy_0193 ABC-type metal ion transporter, periplasmic subunit K09815 znuA; zinc transport system substrate-binding protein D Thicy_0191 ABC-type transporter, integral membrane subunit K09816 znuB; zinc transport system permease protein D Thicy_0192 ABC transporter related protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D Thicy_0670 ABC-type metal ion transporter, periplasmic subunit K11707 troA; manganese/zinc/iron transport system substrate-binding protein D Thicy_0668 ABC-type transporter, integral membrane subunit K11708 troC; manganese/zinc/iron transport system permease protein D Thicy_0667 ABC-type transporter, integral membrane subunit K11709 troD; manganese/zinc/iron transport system permease protein D Thicy_0669 Phosphonate-transporting ATPase K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5] D Thicy_1078 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein D Thicy_1077 Phosphonate-transporting ATPase K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D Thicy_1432 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein D Thicy_1431 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D Thicy_0463 Sulfate-transporting ATPase K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D Thicy_0949 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] C 02060 Phosphotransferase system (PTS) C 03070 Bacterial secretion system [PATH:tcy03070] D Thicy_0751 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Thicy_1403 outer membrane efflux protein K12340 tolC; outer membrane protein D Thicy_1006 general secretion pathway protein D K02453 gspD; general secretion pathway protein D D Thicy_1007 hypothetical protein K02452 gspC; general secretion pathway protein C D Thicy_1004 general secretion pathway protein F K02455 gspF; general secretion pathway protein F D Thicy_1003 general secretion pathway protein G K02456 gspG; general secretion pathway protein G D Thicy_1001 general secretion pathway protein I K02458 gspI; general secretion pathway protein I D Thicy_1000 general secretion pathway protein J K02459 gspJ; general secretion pathway protein J D Thicy_0999 general secretion pathway protein K K02460 gspK; general secretion pathway protein K D Thicy_0998 General secretion pathway L K02461 gspL; general secretion pathway protein L D Thicy_0997 General secretion pathway M protein K02462 gspM; general secretion pathway protein M D Thicy_1005 general secretory pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D Thicy_1168 type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D Thicy_0987 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Thicy_0986 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D Thicy_0109 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Thicy_0636 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Thicy_0142 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Thicy_0988 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Thicy_1643 Membrane protein oxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase D Thicy_0205 Protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Thicy_0353 SecA DEAD domain protein K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Thicy_0268 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Thicy_0258 Protein-export protein secB K03071 secB; preprotein translocase subunit SecB D Thicy_0489 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Thicy_1542 Sec-independent protein translocase protein tatA/E-like protein K03116 tatA; sec-independent protein translocase protein TatA D Thicy_1543 Sec-independent protein translocase protein tatB-like protein K03117 tatB; sec-independent protein translocase protein TatB D Thicy_1544 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC B B 09132 Signal transduction C 02020 Two-component system [PATH:tcy02020] D Thicy_0888 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Thicy_1451 integral membrane sensor signal transduction histidine kinase K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3] D Thicy_1452 two component transcriptional regulator, winged helix family K07664 baeR; two-component system, OmpR family, response regulator BaeR D Thicy_0001 Chromosomal replication initiator protein dnaA K02313 dnaA; chromosomal replication initiator protein D Thicy_0799 integral membrane sensor signal transduction histidine kinase K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3] D Thicy_0973 UTP-GlnB uridylyltransferase, GlnD K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D Thicy_0672 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D Thicy_0673 nitrogen metabolism transcriptional regulator, NtrC, Fis Family K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D Thicy_1277 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thicy_1523 integral membrane sensor signal transduction histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D Thicy_1524 two component, sigma54 specific, transcriptional regulator, Fis family K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D Thicy_0796 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Thicy_1118 putative transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Thicy_0861 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Thicy_1435 two component transcriptional regulator, Fis family K15012 regA; two-component system, response regulator RegA D Thicy_0482 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D Thicy_0483 Cytochrome b/b6 domain protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D Thicy_0484 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D Thicy_1535 cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D Thicy_1534 cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D Thicy_1532 cytochrome c class I K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D Thicy_0751 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Thicy_1403 outer membrane efflux protein K12340 tolC; outer membrane protein D Thicy_0461 protein tyrosine phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D Thicy_0031 Hpt domain protein K20976 hptB; histidine phosphotransfer protein HptB C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis D Thicy_0482 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:tcy02024] D Thicy_0014 quorum-sensing autoinducer 2 (AI-2), LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D Thicy_0511 Protein hfq K03666 hfq; host factor-I protein D Thicy_0100 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Thicy_0101 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Thicy_1033 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Thicy_1118 putative transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Thicy_0861 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Thicy_1040 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Thicy_0856 ABC-type transporter, periplasmic subunit K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Thicy_0752 ABC-type transporter, periplasmic subunit K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Thicy_0855 ABC-type transporter, integral membrane subunit K02033 ABC.PE.P; peptide/nickel transport system permease protein D Thicy_1123 ABC-type transporter, integral membrane subunit K02033 ABC.PE.P; peptide/nickel transport system permease protein D Thicy_0854 ABC-type transporter, integral membrane subunit K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Thicy_1122 ABC-type transporter, integral membrane subunit K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Thicy_0852 Nickel-transporting ATPase., Fe(3+)-transporting ATPase K02031 ddpD; peptide/nickel transport system ATP-binding protein D Thicy_1643 Membrane protein oxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase D Thicy_0109 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Thicy_0636 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Thicy_0142 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Thicy_0988 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Thicy_0205 Protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Thicy_0353 SecA DEAD domain protein K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Thicy_0268 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Thicy_0258 Protein-export protein secB K03071 secB; preprotein translocase subunit SecB D Thicy_0489 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis C 02040 Flagellar assembly [PATH:tcy02040] D Thicy_1357 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor D Thicy_0796 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D Thicy_0711 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism D Thicy_0037 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:tcy01501] D Thicy_1121 Beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D Thicy_1441 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Thicy_0349 hypothetical protein K03585 acrA; membrane fusion protein, multidrug efflux system D Thicy_1440 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Thicy_0751 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Thicy_1403 outer membrane efflux protein K12340 tolC; outer membrane protein D Thicy_0021 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Thicy_1254 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Thicy_1348 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:tcy01502] D Thicy_0200 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Thicy_0804 Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Thicy_1346 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Thicy_1345 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Thicy_1342 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:tcy01503] D Thicy_0508 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Thicy_0888 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Thicy_1657 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D Thicy_1441 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Thicy_0349 hypothetical protein K03585 acrA; membrane fusion protein, multidrug efflux system D Thicy_1440 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Thicy_0751 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Thicy_1403 outer membrane efflux protein K12340 tolC; outer membrane protein D Thicy_0960 Acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:tcy01000] C 01001 Protein kinases [BR:tcy01001] D Thicy_0300 HipA domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D Thicy_0420 HipA N-terminal domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D Thicy_0385 HipA N-terminal domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D Thicy_1451 integral membrane sensor signal transduction histidine kinase K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3] D Thicy_0799 integral membrane sensor signal transduction histidine kinase K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3] D Thicy_0672 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D Thicy_1523 integral membrane sensor signal transduction histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D Thicy_1650 integral membrane sensor signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D Thicy_1337 integral membrane sensor signal transduction histidine kinase K20971 ladS; two-component system, sensor histidine kinase LadS D Thicy_1478 integral membrane sensor signal transduction histidine kinase K20971 ladS; two-component system, sensor histidine kinase LadS C 01009 Protein phosphatases and associated proteins [BR:tcy01009] D Thicy_0458 Chaperone protein htpG K04079 HSP90A; molecular chaperone HtpG D Thicy_0450 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:tcy01002] D Thicy_1175 Lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D Thicy_1031 Prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Thicy_0455 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Thicy_0628 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Thicy_0253 Glutamate synthase (ferredoxin) K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Thicy_0005 Glucosamine--fructose-6-phosphate aminotransferase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Thicy_0210 asparagine synthase family amidotransferase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Thicy_0355 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D Thicy_1640 Oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70] D Thicy_0858 Peptidase M16C associated domain protein K06972 PITRM1; presequence protease [EC:3.4.24.-] D Thicy_0269 processing peptidase K07263 pqqL; zinc protease [EC:3.4.24.-] D Thicy_0270 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-] D Thicy_1433 cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Thicy_1116 Succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Thicy_0972 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D Thicy_1158 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D Thicy_0632 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Thicy_0247 Ste24 endopeptidase K06013 STE24; STE24 endopeptidase [EC:3.4.24.84] D Thicy_1247 protease htpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D Thicy_0220 peptidase M48 Ste24p K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-] D Thicy_0965 membrane-associated zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D Thicy_0352 secretion protein HlyD family protein K16922 yydH; putative peptide zinc metalloprotease protein D Thicy_0573 protein of unknown function DUF980 K09933 mtfA; MtfA peptidase D Thicy_0888 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Thicy_1256 Beta-lactamase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Thicy_0659 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D Thicy_0437 anti-sigma H sporulation factor, LonB K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D Thicy_0661 anti-sigma H sporulation factor, LonB K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D Thicy_0737 Peptidase S24/S26A/S26B, conserved region K01356 lexA; repressor LexA [EC:3.4.21.88] D Thicy_0839 Peptidase S24/S26A/S26B, conserved region K03503 umuD; DNA polymerase V [EC:3.4.21.-] D Thicy_0886 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D Thicy_0032 proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D Thicy_1340 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D Thicy_0759 peptidase S49 K04773 sppA; protease IV [EC:3.4.21.-] D Thicy_0373 ATP-dependent protease hslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D Thicy_0294 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Thicy_1109 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-] D Thicy_0514 HflC protein K04087 hflC; modulator of FtsH protease HflC D Thicy_0513 HflK protein K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:tcy01003] D Thicy_1313 Glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] D Thicy_0021 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Thicy_1576 hypothetical protein K13693 gpgS; glucosyl-3-phosphoglycerate synthase [EC:2.4.1.266] C 01005 Lipopolysaccharide biosynthesis proteins [BR:tcy01005] D Thicy_0960 Acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D Thicy_0959 Lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D Thicy_0203 UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D Thicy_0962 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D Thicy_0680 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D Thicy_1089 Tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D Thicy_0950 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Thicy_1588 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Thicy_0072 Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Thicy_1323 Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Thicy_1321 Lipid A 3-O-deacylase-related protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-] D Thicy_0075 Glutamine--scyllo-inositol transaminase K19715 kdnA; 8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase [EC:2.6.1.109] D Thicy_0074 iron-containing alcohol dehydrogenase K19714 kdnB; 3-deoxy-alpha-D-manno-octulosonate 8-oxidase [EC:1.1.3.48] D Thicy_0710 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D Thicy_0073 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Thicy_1087 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Thicy_0466 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D Thicy_1322 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D Thicy_0943 lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D Thicy_0937 O-antigen polymerase K02847 waaL; O-antigen ligase [EC:2.4.99.26] D Thicy_1319 sugar isomerase (SIS) K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D Thicy_1185 histidinol-phosphate phosphatase family protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D Thicy_1320 Bifunctional protein hldE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D Thicy_0946 ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D Thicy_1418 glycosyl transferase family 2 K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:tcy01011] D Thicy_0477 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Thicy_1120 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Thicy_0199 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Thicy_1344 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Thicy_1347 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Thicy_0200 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Thicy_0804 Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Thicy_1345 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Thicy_1342 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Thicy_1365 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Thicy_1178 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D Thicy_0021 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Thicy_1254 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Thicy_1348 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Thicy_1256 Beta-lactamase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Thicy_0685 Lytic transglycosylase catalytic K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Thicy_1172 lytic murein transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D Thicy_1679 Lytic transglycosylase catalytic K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29] D Thicy_0686 Peptidoglycan-binding lysin domain protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D Thicy_1138 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D Thicy_0508 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Thicy_0695 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:tcy01004] D Thicy_1144 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Thicy_1145 3-oxoacyl-(acyl-carrier-protein) synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Thicy_0266 Beta-ketoacyl-acyl-carrier-protein synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Thicy_1141 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Thicy_1143 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Thicy_0265 3-hydroxydecanoyl-(acyl-carrier-protein) dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D Thicy_0961 (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Thicy_0857 Enoyl-(acyl-carrier-protein) reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Thicy_1066 Lysophospholipase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D Thicy_0872 Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Thicy_1146 Phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Thicy_1362 Glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Thicy_1184 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:tcy01006] D Thicy_1029 Geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D Thicy_0165 Trans-hexaprenyltranstransferase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D Thicy_0967 Undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Thicy_1506 Phytoene synthase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] D Thicy_0510 tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Thicy_0747 UbiA prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D Thicy_1603 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] C 01007 Amino acid related enzymes [BR:tcy01007] D Thicy_0522 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Thicy_0683 Glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Thicy_0724 Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain protein K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D Thicy_0262 Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Thicy_0445 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Thicy_0684 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Thicy_1514 Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Thicy_0588 Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Thicy_1176 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Thicy_1397 Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Thicy_1389 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Thicy_0827 Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Thicy_1026 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Thicy_0237 Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Thicy_1187 Glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Thicy_1186 Glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Thicy_0979 Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Thicy_0601 Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Thicy_1429 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Thicy_0504 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Thicy_1425 Phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Thicy_1424 Phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Thicy_1437 Aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Thicy_0718 LL-diaminopimelate aminotransferase K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-] D Thicy_0817 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Thicy_0480 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Thicy_1571 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D Thicy_0018 Cystathionine beta-lyase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Thicy_1307 Acetylornithine/succinyldiaminopimelate aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Thicy_0609 diaminobutyrate/2-oxoglutarate aminotransferase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] D Thicy_0107 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D Thicy_0432 Glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D Thicy_1257 D-amino-acid transaminase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D Thicy_1306 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Thicy_0819 Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:tcy00194] D Thicy_1606 ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Thicy_1607 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Thicy_1608 ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Thicy_1609 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Thicy_1610 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D Thicy_1611 ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Thicy_1612 ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Thicy_1613 ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Thicy_1614 hypothetical protein K02116 atpI; ATP synthase protein I D Thicy_1615 hypothetical protein K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:tcy03000] D Thicy_0384 transcriptional regulator, LysR family K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D Thicy_1660 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D Thicy_1552 transcriptional regulator, LysR family K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D Thicy_1455 transcriptional regulator, TetR family K22106 fatR; TetR/AcrR family transcriptional regulator, repressor of fatR-cypB operon D Thicy_0411 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D Thicy_0181 transcriptional regulator, MerR family K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator D Thicy_1061 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Thicy_1118 putative transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Thicy_0861 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Thicy_0232 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D Thicy_0307 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Thicy_0671 iron (metal) dependent repressor, DtxR family K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D Thicy_0263 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Thicy_0392 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D Thicy_0419 helix-turn-helix domain protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D Thicy_0383 transcriptional regulator, XRE family K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D Thicy_0537 transcriptional regulator, XRE family K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D Thicy_0418 transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein D Thicy_1192 putative transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein D Thicy_1272 BolA family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D Thicy_1616 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Thicy_0321 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D Thicy_0323 UPF0301 protein yqgE K07735 algH; putative transcriptional regulator D Thicy_0725 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Thicy_1041 Transcriptional repressor nrdR K07738 nrdR; transcriptional repressor NrdR D Thicy_1352 Protein mraZ K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:tcy03021] D Thicy_0146 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Thicy_0115 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Thicy_0116 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Thicy_0045 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Thicy_1357 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor D Thicy_1547 RNA polymerase, sigma 32 subunit, RpoH K03089 rpoH; RNA polymerase sigma-32 factor D Thicy_0796 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Thicy_0866 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA D Thicy_1036 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB D Thicy_0110 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG D Thicy_1416 Glutathione S-transferase domain protein K03599 sspA; stringent starvation protein A D Thicy_1415 Stringent starvation protein B K03600 sspB; stringent starvation protein B D Thicy_0889 positive regulator of sigma E, RseC/MucC K03803 rseC; sigma-E factor negative regulatory protein RseC D Thicy_0725 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Thicy_1052 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D Thicy_1639 transcription elongation factor GreB K04760 greB; transcription elongation factor GreB D Thicy_1580 transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:tcy03019] D Thicy_1152 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12] D Thicy_0603 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-] D Thicy_0885 Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] D Thicy_0790 RNA-metabolising metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-] D Thicy_1235 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Thicy_0248 Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D Thicy_0027 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Thicy_1456 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Thicy_0711 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Thicy_0859 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Thicy_1580 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Thicy_1057 Chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK D Thicy_0174 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Thicy_0511 Protein hfq K03666 hfq; host factor-I protein D Thicy_0280 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D Thicy_0302 polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D Thicy_1245 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D Thicy_0698 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D Thicy_0564 ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] D Thicy_1621 ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:tcy03011] D Thicy_0813 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D Thicy_0971 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D Thicy_0128 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D Thicy_0145 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D Thicy_0139 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D Thicy_0809 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D Thicy_0118 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D Thicy_0136 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D Thicy_0179 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D Thicy_0121 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D Thicy_0144 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D Thicy_0117 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D Thicy_0143 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D Thicy_0135 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D Thicy_0860 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D Thicy_0490 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D Thicy_0131 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D Thicy_0808 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D Thicy_0126 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D Thicy_1379 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D Thicy_1360 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D Thicy_0112 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D Thicy_0125 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D Thicy_0122 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D Thicy_0123 ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4 D Thicy_0134 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D Thicy_0137 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D Thicy_0806 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D Thicy_0113 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D Thicy_0111 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D Thicy_0114 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D Thicy_0178 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D Thicy_0132 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D Thicy_0141 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D Thicy_0129 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D Thicy_0147 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D Thicy_0138 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D Thicy_0493 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D Thicy_1426 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D Thicy_0166 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D Thicy_0127 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D Thicy_0124 Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23 D Thicy_0133 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D Thicy_0167 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D Thicy_0331 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D Thicy_0130 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D Thicy_0140 ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D Thicy_1581 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D Thicy_1147 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D Thicy_0330 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D Thicy_1645 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D Thicy_1427 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D Thicy_0957 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D Thicy_1377 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D Thicy_R0023 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Thicy_R0011 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Thicy_R0007 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thicy_R0019 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thicy_R0010 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thicy_R0022 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:tcy03009] D Thicy_0885 Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] D Thicy_0248 Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D Thicy_0884 GTP-binding protein Era-like-protein K03595 era; GTPase D Thicy_0168 GTPase obg K03979 obgE; GTPase [EC:3.6.5.-] D Thicy_0725 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Thicy_0866 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA D Thicy_1036 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB D Thicy_0110 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG D Thicy_1269 Ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D Thicy_1521 sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Thicy_1491 methyltransferase small K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D Thicy_0271 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D Thicy_1334 Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D Thicy_1618 Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Thicy_1351 Ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D Thicy_1353 Ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D Thicy_1234 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D Thicy_0631 Ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D Thicy_1380 Ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D Thicy_0296 methyltransferase small K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Thicy_1231 protein of unknown function DUF519 K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D Thicy_1171 Ribosomal RNA large subunit methyltransferase L K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D Thicy_0235 Ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D Thicy_1439 RNA methyltransferase, TrmA family K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D Thicy_0702 pseudouridine synthase Rlu family protein, TIGR01621 K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Thicy_0460 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Thicy_0745 pseudouridine synthase Rsu K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D Thicy_1151 pseudouridine synthase, RluA family K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D Thicy_0692 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Thicy_1104 pseudouridine synthase Rsu K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D Thicy_0404 pseudouridine synthase Rsu K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D Thicy_0228 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D Thicy_0496 Ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] D Thicy_0491 Ribosome maturation factor rimM K02860 rimM; 16S rRNA processing protein RimM D Thicy_1111 Ribosomal protein S12 methylthiotransferase rimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D Thicy_0705 YcaO-domain protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor D Thicy_0394 Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D Thicy_0439 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] D Thicy_0662 Cupin 4 family protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] D Thicy_1152 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12] D Thicy_0603 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-] D Thicy_0322 Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D Thicy_1214 DEAD/DEAH box helicase domain protein K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] D Thicy_1456 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Thicy_1473 DEAD/DEAH box helicase domain protein K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7] D Thicy_0245 ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Thicy_0240 GTP-binding protein engA K03977 engA; GTPase D Thicy_0952 ribosome biogenesis GTP-binding protein YlqF K14540 rbgA; ribosome biogenesis GTPase A D Thicy_0512 GTP-binding proten HflX K03665 hflX; GTPase D Thicy_1664 SUA5/yciO/yrdC domain protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Thicy_0044 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Thicy_0864 Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D Thicy_0867 Ribosome maturation factor rimP K09748 rimP; ribosome maturation factor RimP D Thicy_1381 iojap-like protein K09710 ybeB; ribosome-associated protein D Thicy_1280 metalloprotease ybeY K07042 ybeY; probable rRNA maturation factor D Thicy_0630 RNA-binding, CRM domain protein K07574 yhbY; RNA-binding protein D Thicy_0733 Uncharacterized protein family UPF0307 K09889 yjgA; ribosome-associated protein D Thicy_0462 sigma 54 modulation protein/ribosomal protein S30EA K05808 hpf; ribosome hibernation promoting factor D Thicy_1375 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase D Thicy_1148 protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:tcy03016] D Thicy_0084 polynucleotide adenylyltransferase/metal dependent phosphohydrolase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D Thicy_0522 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Thicy_0601 Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Thicy_1176 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Thicy_1389 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Thicy_0588 Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Thicy_0683 Glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Thicy_1514 Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Thicy_0827 Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Thicy_1026 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Thicy_0504 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Thicy_1429 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Thicy_0979 Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Thicy_0684 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Thicy_1397 Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Thicy_0237 Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Thicy_1425 Phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Thicy_1424 Phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Thicy_0262 Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Thicy_0445 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Thicy_1541 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Thicy_1585 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D Thicy_0621 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D Thicy_0863 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D Thicy_1479 tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D Thicy_1664 SUA5/yciO/yrdC domain protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Thicy_0510 tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Thicy_1662 tRNA modification GTPase mnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D Thicy_1619 tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Thicy_0368 Selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D Thicy_0431 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D Thicy_1644 Ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D Thicy_R0046 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA D Thicy_0212 Ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-] D Thicy_0023 Ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D Thicy_0358 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D Thicy_1043 ATP-binding cassette protein, ChvD family K06020 ettA; energy-dependent translational throttle protein EttA D Thicy_1187 Glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Thicy_1186 Glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Thicy_0724 Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain protein K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D Thicy_0457 CMP/dCMP deaminase zinc-binding protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D Thicy_0792 TIM-barrel protein, yjbN family K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D Thicy_0393 TIM-barrel protein, nifR3 family K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D Thicy_1282 (Dimethylallyl)adenosine tRNA methylthiotransferase miaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D Thicy_1675 tRNA (cmo5U34)-methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D Thicy_1674 tRNA (mo5U34)-methyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-] D Thicy_1684 Methyltransferase type 11 K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-] D Thicy_1590 tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35] D Thicy_0492 tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D Thicy_0230 RNA methyltransferase, TrmH family, group 1 K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200] D Thicy_0260 tRNA/rRNA methyltransferase (SpoU) K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D Thicy_0702 pseudouridine synthase Rlu family protein, TIGR01621 K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Thicy_0460 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Thicy_1105 tRNA-specific 2-thiouridylase mnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Thicy_1589 PP-loop domain protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D Thicy_0221 SirA-like domain-containing protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D Thicy_1188 SirA-like domain-containing protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D Thicy_0233 iron-sulfur cluster assembly accessory protein K13628 iscA; iron-sulfur cluster assembly protein D Thicy_1011 folate-binding protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ D Thicy_0059 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] D Thicy_0990 S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D Thicy_1014 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D Thicy_1030 queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Thicy_0615 hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D Thicy_1624 NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D Thicy_0506 iron-sulfur cluster binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D Thicy_0369 tRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3] D Thicy_0989 Queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D Thicy_0708 tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D Thicy_0058 protein of unknown function DUF699 ATPase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193] D Thicy_0955 universal protein YeaZ K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D Thicy_1361 O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D Thicy_0507 Uncharacterized protein family UPF0079, ATPase K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D Thicy_0149 UBA/THIF-type NAD/FAD binding protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D Thicy_1235 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Thicy_0859 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Thicy_0904 PilT protein domain protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-] C 03012 Translation factors [BR:tcy03012] D Thicy_0865 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D Thicy_1428 Translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D Thicy_1076 ABC transporter related protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D Thicy_0970 Elongation factor Ts K02357 tsf; elongation factor Ts D Thicy_0108 translation elongation factor Tu K02358 tuf; elongation factor Tu D Thicy_0120 translation elongation factor Tu K02358 tuf; elongation factor Tu D Thicy_0119 translation elongation factor G K02355 fusA; elongation factor G D Thicy_0606 Peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D Thicy_0968 Ribosome-recycling factor K02838 frr; ribosome recycling factor D Thicy_0605 protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D Thicy_1376 Peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D Thicy_0880 Translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D Thicy_0843 Elongation factor P K02356 efp; elongation factor P D Thicy_0828 hypothetical protein K02836 prfB; peptide chain release factor 2 D Thicy_0985 Peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 C 03110 Chaperones and folding catalysts [BR:tcy03110] D Thicy_1102 ATP-dependent Clp protease, ATP-binding subunit clpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D Thicy_0376 ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D Thicy_0660 ATP-dependent Clp protease ATP-binding subunit clpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D Thicy_0367 ATP-dependent hsl protease ATP-binding subunit hslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D Thicy_0458 Chaperone protein htpG K04079 HSP90A; molecular chaperone HtpG D Thicy_1057 Chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK D Thicy_0174 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Thicy_1056 Chaperone protein dnaJ K03686 dnaJ; molecular chaperone DnaJ D Thicy_1471 chaperone DnaJ domain protein K05516 cbpA; curved DNA-binding protein D Thicy_1261 Hsp33 protein K04083 hslO; molecular chaperone Hsp33 D Thicy_1058 Protein grpE K03687 GRPE; molecular chaperone GrpE D Thicy_1651 RNA-binding S4 domain protein K04762 hslR; ribosome-associated heat shock protein Hsp15 D Thicy_0173 10 kDa chaperonin K04078 groES; chaperonin GroES D Thicy_0888 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Thicy_0632 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Thicy_1613 ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Thicy_0258 Protein-export protein secB K03071 secB; preprotein translocase subunit SecB D Thicy_1072 protein of unknown function DUF461 K09796 pccA; periplasmic copper chaperone A D Thicy_0681 peptidyl-prolyl cis-trans isomerase cyclophilin type K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D Thicy_0682 Peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D Thicy_0727 PpiC-type peptidyl-prolyl cis-trans isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D Thicy_0459 FKBP-type peptidyl-prolyl isomerase domain protein K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D Thicy_1129 peptidylprolyl isomerase FKBP-type K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8] D Thicy_0562 peptidylprolyl isomerase FKBP-type K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D Thicy_0653 Peptidylprolyl isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D Thicy_0758 PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D Thicy_0209 PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D Thicy_1267 PpiC-type peptidyl-prolyl cis-trans isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D Thicy_1579 thioredoxin K03671 TXN; thioredoxin D Thicy_1048 thioredoxin K03671 TXN; thioredoxin D Thicy_0499 thioredoxin K05838 ybbN; putative thioredoxin D Thicy_0257 glutaredoxin 3 K03676 grxC; glutaredoxin 3 D Thicy_0211 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin D Thicy_1657 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D Thicy_1399 disulfide bond isomerase, DsbC/G K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D Thicy_0398 Thiol:disulfide interchange protein dsbD K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16] C 04131 Membrane trafficking [BR:tcy04131] D Thicy_0234 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Thicy_0089 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Thicy_0091 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Thicy_0458 Chaperone protein htpG K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system [BR:tcy04121] C 03051 Proteasome [BR:tcy03051] D Thicy_0458 Chaperone protein htpG K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:tcy03032] D Thicy_0689 Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Thicy_1287 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Thicy_1423 Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D Thicy_0812 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D Thicy_0001 Chromosomal replication initiator protein dnaA K02313 dnaA; chromosomal replication initiator protein D Thicy_0805 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Thicy_1358 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D Thicy_0164 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Thicy_0873 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Thicy_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Thicy_1434 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Thicy_1387 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Thicy_1136 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Thicy_0840 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Thicy_0868 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Thicy_1469 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Thicy_0561 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Thicy_1311 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Thicy_0958 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Thicy_1586 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Thicy_0732 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Thicy_0595 DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein D Thicy_0820 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Thicy_1647 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Thicy_0613 DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Thicy_1181 DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Thicy_1515 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:tcy03036] D Thicy_0885 Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] D Thicy_0317 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS D Thicy_1287 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Thicy_1423 Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D Thicy_0812 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D Thicy_1471 chaperone DnaJ domain protein K05516 cbpA; curved DNA-binding protein D Thicy_0001 Chromosomal replication initiator protein dnaA K02313 dnaA; chromosomal replication initiator protein D Thicy_1356 Ferritin Dps family protein K04047 dps; starvation-inducible DNA-binding protein D Thicy_0392 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D Thicy_0511 Protein hfq K03666 hfq; host factor-I protein D Thicy_0730 chromosome segregation protein SMC K03529 smc; chromosome segregation protein D Thicy_0743 chromosome segregation and condensation protein ScpA K05896 scpA; segregation and condensation protein A D Thicy_0744 chromosome segregation and condensation protein, ScpB K06024 scpB; segregation and condensation protein B D Thicy_0202 cell division protein FtsA K03590 ftsA; cell division protein FtsA D Thicy_0712 Septum formation initiator K05589 ftsB; cell division protein FtsB D Thicy_1348 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Thicy_0983 cell division protein FtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D Thicy_1349 cell division protein FtsL K03586 ftsL; cell division protein FtsL D Thicy_0201 Polypeptide-transport-associated domain protein FtsQ-type K03589 ftsQ; cell division protein FtsQ D Thicy_1343 cell division protein FtsW K03588 ftsW; cell division protein FtsW D Thicy_1350 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Thicy_0731 ZipA FtsZ-binding region protein K03528 zipA; cell division protein ZipA D Thicy_0508 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Thicy_1441 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Thicy_0349 hypothetical protein K03585 acrA; membrane fusion protein, multidrug efflux system D Thicy_1084 septum site-determining protein minC K03610 minC; septum site-determining protein MinC D Thicy_1083 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D Thicy_1082 Cell division topological specificity factor K03608 minE; cell division topological specificity factor D Thicy_1251 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Thicy_1252 Rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D Thicy_1253 rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D Thicy_1255 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D Thicy_1599 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein D Thicy_1617 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein D Thicy_1616 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Thicy_0613 DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Thicy_1181 DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Thicy_1619 tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Thicy_1618 Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Thicy_0372 Tyrosine recombinase xerC K03733 xerC; integrase/recombinase XerC D Thicy_1400 Tyrosine recombinase xerC K04763 xerD; integrase/recombinase XerD D Thicy_0589 ATPase-like, ParA/MinD K03593 mrp; ATP-binding protein involved in chromosome partitioning D Thicy_0539 filamentation induced by cAMP protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D Thicy_1654 GTP-binding protein engB K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:tcy03400] D Thicy_0160 DNA photolyase FAD-binding protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D Thicy_0182 Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D Thicy_1290 DNA photolyase FAD-binding protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D Thicy_1183 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D Thicy_1584 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D Thicy_0581 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Thicy_0207 thiamine monophosphate synthase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Thicy_0284 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Thicy_0162 deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] D Thicy_0291 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D Thicy_0056 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Thicy_0722 phosphoesterase RecJ domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Thicy_0732 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Thicy_1586 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Thicy_0156 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A D Thicy_1436 UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B D Thicy_0760 UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C D Thicy_1578 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Thicy_0115 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Thicy_0116 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Thicy_0146 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Thicy_0045 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Thicy_1080 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Thicy_0500 DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS D Thicy_0509 DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL D Thicy_0793 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Thicy_0794 Exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Thicy_0873 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Thicy_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Thicy_1434 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Thicy_1387 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Thicy_1136 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Thicy_0840 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Thicy_0868 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Thicy_1469 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Thicy_0561 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Thicy_1311 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Thicy_0164 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Thicy_0526 exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D Thicy_0527 exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D Thicy_0525 exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D Thicy_0502 Protein recA K03553 recA; recombination protein RecA D Thicy_1022 Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA D Thicy_1021 Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Thicy_1023 Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Thicy_1443 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D Thicy_0485 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D Thicy_1646 DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF D Thicy_0042 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Thicy_0883 DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) D Thicy_1309 Recombination protein recR K06187 recR; recombination protein RecR D Thicy_1060 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Thicy_0820 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Thicy_1647 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Thicy_1515 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Thicy_1287 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Thicy_0392 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D Thicy_1423 Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D Thicy_0812 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D Thicy_0317 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS D Thicy_0841 DNA-directed DNA polymerase K03502 umuC; DNA polymerase V D Thicy_0839 Peptidase S24/S26A/S26B, conserved region K03503 umuD; DNA polymerase V [EC:3.4.21.-] D Thicy_0737 Peptidase S24/S26A/S26B, conserved region K01356 lexA; repressor LexA [EC:3.4.21.88] D Thicy_0503 regulatory protein RecX K03565 recX; regulatory protein D Thicy_1482 UvrD/REP helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D Thicy_0956 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D Thicy_1193 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Thicy_1194 ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:tcy03029] D Thicy_0483 Cytochrome b/b6 domain protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D Thicy_0865 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D Thicy_1428 Translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D Thicy_0970 Elongation factor Ts K02357 tsf; elongation factor Ts D Thicy_0108 translation elongation factor Tu K02358 tuf; elongation factor Tu D Thicy_0120 translation elongation factor Tu K02358 tuf; elongation factor Tu D Thicy_0119 translation elongation factor G K02355 fusA; elongation factor G D Thicy_0884 GTP-binding protein Era-like-protein K03595 era; GTPase D Thicy_0262 Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Thicy_1389 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Thicy_1026 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Thicy_1514 Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Thicy_1249 Glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Thicy_1248 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D Thicy_1250 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D Thicy_1683 DNA/RNA non-specific endonuclease K01173 ENDOG; endonuclease G, mitochondrial D Thicy_0164 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Thicy_0964 outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family D Thicy_1057 Chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK D Thicy_1058 Protein grpE K03687 GRPE; molecular chaperone GrpE D Thicy_0174 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Thicy_0173 10 kDa chaperonin K04078 groES; chaperonin GroES D Thicy_1056 Chaperone protein dnaJ K03686 dnaJ; molecular chaperone DnaJ D Thicy_0211 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin D Thicy_0589 ATPase-like, ParA/MinD K03593 mrp; ATP-binding protein involved in chromosome partitioning D Thicy_1643 Membrane protein oxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase D Thicy_1071 electron transport protein SCO1/SenC K07152 SCO1; protein SCO1 D Thicy_0458 Chaperone protein htpG K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:tcy02000] D Thicy_0949 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D Thicy_1134 Xenobiotic-transporting ATPase K06148 ABCC-BAC; ATP-binding cassette, subfamily C, bacterial D Thicy_0427 ABC transporter related protein K15738 uup; ABC transport system ATP-binding/permease protein D Thicy_0417 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Thicy_0416 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein D Thicy_0415 molybdate ABC transporter, ATPase subunit K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D Thicy_0407 molybdate ABC transporter, ATPase subunit K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D Thicy_0778 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15576 nrtA; nitrate/nitrite transport system substrate-binding protein D Thicy_0779 ABC-type transporter, integral membrane subunit K15577 nrtB; nitrate/nitrite transport system permease protein D Thicy_0780 nitrate ABC transporter, ATPase subunits C and D K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4] D Thicy_1666 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Thicy_1665 ABC-type transporter, integral membrane subunit K02011 afuB; iron(III) transport system permease protein D Thicy_1667 Fe(3+)-transporting ATPase K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Thicy_0471 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Thicy_0470 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Thicy_0469 Sulfate-transporting ATPase K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Thicy_0472 toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein D Thicy_0473 hypothetical protein K07122 mlaB; phospholipid transport system transporter-binding protein D Thicy_0856 ABC-type transporter, periplasmic subunit K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Thicy_0752 ABC-type transporter, periplasmic subunit K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Thicy_0855 ABC-type transporter, integral membrane subunit K02033 ABC.PE.P; peptide/nickel transport system permease protein D Thicy_1123 ABC-type transporter, integral membrane subunit K02033 ABC.PE.P; peptide/nickel transport system permease protein D Thicy_0854 ABC-type transporter, integral membrane subunit K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Thicy_1122 ABC-type transporter, integral membrane subunit K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Thicy_0852 Nickel-transporting ATPase., Fe(3+)-transporting ATPase K02031 ddpD; peptide/nickel transport system ATP-binding protein D Thicy_0388 ABC-type transporter, integral membrane subunit K25133 hmuU; heme transport system permease protein D Thicy_0389 Iron-chelate-transporting ATPase K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5] D Thicy_0571 ABC-type transporter, periplasmic subunit K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D Thicy_0193 ABC-type metal ion transporter, periplasmic subunit K09815 znuA; zinc transport system substrate-binding protein D Thicy_0191 ABC-type transporter, integral membrane subunit K09816 znuB; zinc transport system permease protein D Thicy_0192 ABC transporter related protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D Thicy_0670 ABC-type metal ion transporter, periplasmic subunit K11707 troA; manganese/zinc/iron transport system substrate-binding protein D Thicy_0668 ABC-type transporter, integral membrane subunit K11708 troC; manganese/zinc/iron transport system permease protein D Thicy_0667 ABC-type transporter, integral membrane subunit K11709 troD; manganese/zinc/iron transport system permease protein D Thicy_0669 Phosphonate-transporting ATPase K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5] D Thicy_1432 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein D Thicy_1431 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D Thicy_0463 Sulfate-transporting ATPase K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D Thicy_1078 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein D Thicy_1077 Phosphonate-transporting ATPase K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D Thicy_0475 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Thicy_0474 Sulfate-transporting ATPase K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Thicy_1068 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Thicy_1067 Phosphonate-transporting ATPase K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Thicy_0196 FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein D Thicy_0801 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D Thicy_0441 major facilitator superfamily MFS_1 K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter D Thicy_0309 major facilitator superfamily MFS_1 K25223 arsJ; MFS transporter, APGE family, 1-arseno-3-phosphoglycerate exporter D Thicy_0656 Ion transport protein K08714 VGSC; voltage-gated sodium channel D Thicy_1394 putative ammonium transporter, marine subtype K03320 amt; ammonium transporter, Amt family D Thicy_1107 Glutathione S-transferase domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Thicy_1416 Glutathione S-transferase domain protein K03599 sspA; stringent starvation protein A D Thicy_1669 Tetratricopeptide TPR_1 repeat-containing protein K07114 yfbK; Ca-activated chloride channel homolog D Thicy_1670 von Willebrand factor type A K07114 yfbK; Ca-activated chloride channel homolog D Thicy_1205 von Willebrand factor type A K07114 yfbK; Ca-activated chloride channel homolog D Thicy_1206 von Willebrand factor type A K07114 yfbK; Ca-activated chloride channel homolog D Thicy_0046 MscS Mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel D Thicy_0520 MscS Mechanosensitive ion channel K16052 ynaI; MscS family membrane protein D Thicy_1284 MscS Mechanosensitive ion channel K16053 ybdG; miniconductance mechanosensitive channel D Thicy_1367 magnesium transporter K06213 mgtE; magnesium transporter D Thicy_0448 tonB-system energizer ExbB K03561 exbB; biopolymer transport protein ExbB D Thicy_0286 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB D Thicy_0288 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD D Thicy_0447 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD D Thicy_0287 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD D Thicy_1020 protein TolQ K03562 tolQ; biopolymer transport protein TolQ D Thicy_1019 Biopolymer transport protein ExbD/TolR K03560 tolR; biopolymer transport protein TolR D Thicy_0980 CrcB-like protein K06199 crcB; fluoride exporter D Thicy_0487 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Thicy_1385 hypothetical protein K16079 omp31; outer membrane immunogenic protein D Thicy_0069 OmpA/MotB domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D Thicy_1407 membrane protein involved in aromatic hydrocarbon degradation K06076 fadL; long-chain fatty acid transport protein D Thicy_1625 TonB-dependent receptor K16091 fecA; Fe(3+) dicitrate transport protein D Thicy_0578 TonB-dependent receptor plug K16092 btuB; vitamin B12 transporter D Thicy_1681 TonB-dependent receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D Thicy_1070 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Thicy_1682 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Thicy_1462 outer membrane insertion C-terminal signal K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Thicy_1301 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Thicy_0751 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Thicy_1403 outer membrane efflux protein K12340 tolC; outer membrane protein D Thicy_0964 outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family D Thicy_0239 outer membrane assembly lipoprotein YfgL K17713 bamB; outer membrane protein assembly factor BamB D Thicy_0835 hypothetical protein K07287 bamC; outer membrane protein assembly factor BamC D Thicy_0691 outer membrane assembly lipoprotein YfiO K05807 bamD; outer membrane protein assembly factor BamD D Thicy_1062 SmpA/OmlA domain-containing protein K06186 bamE; outer membrane protein assembly factor BamE D Thicy_1161 surface antigen (D15) K07278 tamA; translocation and assembly module TamA D Thicy_1162 protein of unknown function DUF490 K09800 tamB; translocation and assembly module TamB D Thicy_0464 lipopolysaccharide transport periplasmic protein LptA K09774 lptA; lipopolysaccharide export system protein LptA D Thicy_1266 Organic solvent tolerance protein K04744 lptD; LPS-assembly protein D Thicy_1388 hypothetical protein K03643 lptE; LPS-assembly lipoprotein D Thicy_1279 CBS domain containing protein K06189 corC; hemolysin (HlyC) family protein D Thicy_0085 cation diffusion facilitator family transporter K13283 fieF; ferrous-iron efflux pump FieF D Thicy_1440 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Thicy_0379 small multidrug resistance protein K03297 emrE; small multidrug resistance pump D Thicy_1327 L-lactate permease K03303 lutP; lactate permease D Thicy_1663 choline/carnitine/betaine transporter K02168 betT; choline/glycine/proline betaine transport protein D Thicy_0172 choline/carnitine/betaine transporter K02168 betT; choline/glycine/proline betaine transport protein D Thicy_0467 Na+/Ca+ antiporter, CaCA family K07301 yrbG; cation:H+ antiporter D Thicy_0870 SSS sodium solute transporter superfamily K14393 actP; cation/acetate symporter D Thicy_1090 sodium/hydrogen exchanger K03455 KEA1_2_3; K+:H+ antiporter D Thicy_1526 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein D Thicy_1525 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein D Thicy_0036 sulphate transporter K03321 TC.SULP; sulfate permease, SulP family D Thicy_0832 sulphate transporter K03321 TC.SULP; sulfate permease, SulP family D Thicy_1634 Na+/Picotransporter K03324 yjbB; phosphate:Na+ symporter D Thicy_0421 arsenical-resistance protein K03325 ACR3; arsenite transporter D Thicy_0413 Bile acid:sodium symporter K03325 ACR3; arsenite transporter D Thicy_1463 NADH dehydrogenase (quinone) K05559 phaA; multicomponent K+:H+ antiporter subunit A D Thicy_1464 NADH-ubiquinone oxidoreductase chain 4L K05560 phaC; multicomponent K+:H+ antiporter subunit C D Thicy_1465 NADH dehydrogenase (quinone) K05561 phaD; multicomponent K+:H+ antiporter subunit D D Thicy_1466 cation antiporter K05562 phaE; multicomponent K+:H+ antiporter subunit E D Thicy_1467 multiple resistance and pH regulation protein F K05563 phaF; multicomponent K+:H+ antiporter subunit F D Thicy_1468 monovalent cation/proton antiporter, MnhG/PhaG subunit K05564 phaG; multicomponent K+:H+ antiporter subunit G D Thicy_1226 NADH-ubiquinone oxidoreductase chain 4L K05567 mnhC; multicomponent Na+:H+ antiporter subunit C D Thicy_1224 NADH dehydrogenase (quinone) K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D Thicy_1230 multisubunit sodium/proton antiporter subunit MrpE K05569 mnhE; multicomponent Na+:H+ antiporter subunit E D Thicy_1229 multiple resistance and pH regulation protein F K05570 mnhF; multicomponent Na+:H+ antiporter subunit F D Thicy_1228 Na+/H+ antiporter subunit K05571 mnhG; multicomponent Na+:H+ antiporter subunit G D Thicy_1178 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D Thicy_1343 cell division protein FtsW K03588 ftsW; cell division protein FtsW D Thicy_0446 TonB family protein K03832 tonB; periplasmic protein TonB D Thicy_0289 TonB family protein K03832 tonB; periplasmic protein TonB D Thicy_1016 OmpA/MotB domain protein K03640 pal; peptidoglycan-associated lipoprotein D Thicy_1018 protein TolA K03646 tolA; colicin import membrane protein D Thicy_1017 Protein tolB K03641 tolB; TolB protein D Thicy_1460 efflux transporter, RND family, MFP subunit K18302 mexJ; membrane fusion protein, multidrug efflux system D Thicy_1441 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Thicy_0349 hypothetical protein K03585 acrA; membrane fusion protein, multidrug efflux system D Thicy_1303 nicotinamide mononucleotide transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter C 02044 Secretion system [BR:tcy02044] D Thicy_0751 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Thicy_1403 outer membrane efflux protein K12340 tolC; outer membrane protein D Thicy_1007 hypothetical protein K02452 gspC; general secretion pathway protein C D Thicy_1006 general secretion pathway protein D K02453 gspD; general secretion pathway protein D D Thicy_1005 general secretory pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D Thicy_1168 type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D Thicy_1004 general secretion pathway protein F K02455 gspF; general secretion pathway protein F D Thicy_1003 general secretion pathway protein G K02456 gspG; general secretion pathway protein G D Thicy_1001 general secretion pathway protein I K02458 gspI; general secretion pathway protein I D Thicy_1000 general secretion pathway protein J K02459 gspJ; general secretion pathway protein J D Thicy_0999 general secretion pathway protein K K02460 gspK; general secretion pathway protein K D Thicy_0998 General secretion pathway L K02461 gspL; general secretion pathway protein L D Thicy_0997 General secretion pathway M protein K02462 gspM; general secretion pathway protein M D Thicy_0996 hypothetical protein K02463 gspN; general secretion pathway protein N D Thicy_1031 Prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Thicy_1169 type II and III secretion system protein K12282 mshL; MSHA biogenesis protein MshL D Thicy_0335 protein of unknown function YGGT K02221 yggT; YggT family protein D Thicy_0951 competence protein ComEA helix-hairpin-helix repeat protein K02237 comEA; competence protein ComEA D Thicy_1095 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC D Thicy_1399 disulfide bond isomerase, DsbC/G K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D Thicy_0205 Protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Thicy_0353 SecA DEAD domain protein K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Thicy_0258 Protein-export protein secB K03071 secB; preprotein translocase subunit SecB D Thicy_0987 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Thicy_0109 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Thicy_0986 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D Thicy_0636 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Thicy_0142 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Thicy_0489 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Thicy_0268 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Thicy_0988 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Thicy_1643 Membrane protein oxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase D Thicy_1542 Sec-independent protein translocase protein tatA/E-like protein K03116 tatA; sec-independent protein translocase protein TatA D Thicy_1543 Sec-independent protein translocase protein tatB-like protein K03117 tatB; sec-independent protein translocase protein TatB D Thicy_1544 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:tcy02042] D Thicy_0487 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family C 02022 Two-component system [BR:tcy02022] D Thicy_1451 integral membrane sensor signal transduction histidine kinase K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3] D Thicy_1452 two component transcriptional regulator, winged helix family K07664 baeR; two-component system, OmpR family, response regulator BaeR D Thicy_0799 integral membrane sensor signal transduction histidine kinase K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3] D Thicy_0798 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Thicy_1336 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Thicy_0672 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D Thicy_0673 nitrogen metabolism transcriptional regulator, NtrC, Fis Family K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D Thicy_1523 integral membrane sensor signal transduction histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D Thicy_1524 two component, sigma54 specific, transcriptional regulator, Fis family K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D Thicy_1650 integral membrane sensor signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D Thicy_1435 two component transcriptional regulator, Fis family K15012 regA; two-component system, response regulator RegA D Thicy_0031 Hpt domain protein K20976 hptB; histidine phosphotransfer protein HptB D Thicy_1337 integral membrane sensor signal transduction histidine kinase K20971 ladS; two-component system, sensor histidine kinase LadS D Thicy_1478 integral membrane sensor signal transduction histidine kinase K20971 ladS; two-component system, sensor histidine kinase LadS C 02035 Bacterial motility proteins [BR:tcy02035] D Thicy_1031 Prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:tcy04812] D Thicy_1251 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Thicy_1350 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Thicy_0202 cell division protein FtsA K03590 ftsA; cell division protein FtsA D Thicy_1084 septum site-determining protein minC K03610 minC; septum site-determining protein MinC D Thicy_1083 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D Thicy_1082 Cell division topological specificity factor K03608 minE; cell division topological specificity factor D Thicy_1599 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein D Thicy_1617 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein D Thicy_1616 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:tcy04147] D Thicy_0458 Chaperone protein htpG K04079 HSP90A; molecular chaperone HtpG D Thicy_0711 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Thicy_0089 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Thicy_0090 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Thicy_0091 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Thicy_0174 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Thicy_1057 Chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK D Thicy_0223 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Thicy_0454 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Thicy_0108 translation elongation factor Tu K02358 tuf; elongation factor Tu D Thicy_0120 translation elongation factor Tu K02358 tuf; elongation factor Tu D Thicy_1541 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Thicy_0020 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Thicy_1641 Adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Thicy_1633 Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Thicy_0676 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Thicy_1238 Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Thicy_1314 1,4-alpha-glucan-branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D Thicy_1277 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thicy_0049 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Thicy_1233 Ketohexokinase K00846 KHK; ketohexokinase [EC:2.7.1.3] D Thicy_0246 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D Thicy_1298 Phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Thicy_0391 Bifunctional purine biosynthesis protein purH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Thicy_0247 Ste24 endopeptidase K06013 STE24; STE24 endopeptidase [EC:3.4.24.84] D Thicy_1236 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thicy_0701 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thicy_0754 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Thicy_0635 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:tcy02048] D Thicy_0541 type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D Thicy_1370 Type I site-specific deoxyribonuclease K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D Thicy_0538 restriction modification system DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D Thicy_1373 restriction modification system DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D Thicy_0535 type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D Thicy_1374 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D Thicy_1484 ATPase associated with various cellular activities AAA_5 K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-] D Thicy_0557 ATPase associated with various cellular activities AAA_5 K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-] D Thicy_1487 5-methylcytosine restriction system component-like protein K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC D Thicy_0558 5-methylcytosine restriction system component-like protein K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC D Thicy_0406 PemK family protein K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D Thicy_0894 addiction module toxin, Txe/YoeB family K19158 yoeB; toxin YoeB [EC:3.1.-.-] D Thicy_0895 prevent-host-death family protein K19159 yefM; antitoxin YefM D Thicy_0300 HipA domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D Thicy_0420 HipA N-terminal domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D Thicy_0385 HipA N-terminal domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D Thicy_0419 helix-turn-helix domain protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D Thicy_0824 CcdB-like toxin protein K19163 ccdB; toxin CcdB D Thicy_0825 Post-segregation antitoxin CcdA K19164 ccdA; antitoxin CcdA D Thicy_1594 plasmid stabilization system K19092 parE1_3_4; toxin ParE1/3/4 D Thicy_1593 addiction module antidote protein, CC2985 family K07746 parD1_3_4; antitoxin ParD1/3/4 D Thicy_0536 Protein of unknown function DUF2136 K19166 higB; mRNA interferase HigB [EC:3.1.-.-] D Thicy_0382 Protein of unknown function DUF2136 K19166 higB; mRNA interferase HigB [EC:3.1.-.-] D Thicy_0383 transcriptional regulator, XRE family K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D Thicy_0537 transcriptional regulator, XRE family K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D Thicy_0904 PilT protein domain protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-] D Thicy_0905 virulence-associated protein, putative K18829 mvpT; antitoxin VapB D Thicy_1350 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Thicy_1251 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Thicy_0613 DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Thicy_1181 DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Thicy_0522 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Thicy_0879 TPR repeat-containing protein K09159 cptB; antitoxin CptB C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:tcy04090] C 01504 Antimicrobial resistance genes [BR:tcy01504] D Thicy_1441 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Thicy_0349 hypothetical protein K03585 acrA; membrane fusion protein, multidrug efflux system D Thicy_1440 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Thicy_1460 efflux transporter, RND family, MFP subunit K18302 mexJ; membrane fusion protein, multidrug efflux system D Thicy_0411 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D Thicy_0751 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Thicy_1403 outer membrane efflux protein K12340 tolC; outer membrane protein C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:tcy03100] D Thicy_R0009 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Thicy_R0021 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Thicy_R0032 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Thicy_R0014 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Thicy_R0045 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Thicy_R0017 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Thicy_R0051 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Thicy_R0048 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Thicy_R0029 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Thicy_R0031 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Thicy_R0037 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Thicy_R0050 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Thicy_R0033 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Thicy_R0035 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Thicy_R0004 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Thicy_R0034 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Thicy_R0036 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Thicy_R0018 tRNA-His K14226 tRNA-His; tRNA His D Thicy_R0008 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Thicy_R0020 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Thicy_R0001 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thicy_R0024 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thicy_R0038 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thicy_R0027 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thicy_R0041 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Thicy_R0025 tRNA-Met K14230 tRNA-Met; tRNA Met D Thicy_R0049 tRNA-Met K14230 tRNA-Met; tRNA Met D Thicy_R0047 tRNA-Met K14230 tRNA-Met; tRNA Met D Thicy_R0002 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Thicy_R0016 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Thicy_R0039 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Thicy_R0040 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Thicy_R0013 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Thicy_R0043 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Thicy_R0005 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Thicy_R0012 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Thicy_R0006 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Thicy_R0003 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Thicy_R0026 tRNA-Val K14237 tRNA-Val; tRNA Val D Thicy_R0028 tRNA-Val K14237 tRNA-Val; tRNA Val D Thicy_R0030 tRNA-Val K14237 tRNA-Val; tRNA Val D Thicy_R0007 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thicy_R0019 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thicy_R0010 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thicy_R0022 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thicy_R0023 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Thicy_R0011 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Thicy_R0044 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA D Thicy_R0046 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA D Thicy_R0015 ssrA; tmRNA as predicted by Rfam (RF00023), score 213.59 K15035 ssrA; transfer-messenger RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D Thicy_1223 glucose dehydrogenase K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-] D Thicy_0308 Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) K25224 gapdh; glyceraldehyde-3-phosphate dehydrogenase (arsenate-transferring) [EC:1.2.1.107] D Thicy_1008 Peptide methionine sulfoxide reductase msrA K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12] D Thicy_1286 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Thicy_0837 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Thicy_1601 thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Thicy_1677 Pirin domain protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D Thicy_1504 beta-carotene 15,15'-monooxygenase, Brp/Blh family K21817 blh; beta-carotene 15,15'-dioxygenase [EC:1.13.11.63] D Thicy_1557 Ferritin Dps family protein K02217 ftnA; ferritin [EC:1.16.3.2] D Thicy_0715 Protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D Thicy_1430 Protein-L-isoaspartate(D-aspartate) O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D Thicy_0185 Cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D Thicy_0862 Methyltransferase type 11 K16868 tehB; tellurite methyltransferase [EC:2.1.1.265] D Thicy_1278 Apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D Thicy_0874 Leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D Thicy_1575 Sucrose phosphorylase K22597 E2.4.1.352; glucosylglycerate phosphorylase [EC:2.4.1.352] D Thicy_1153 DTW domain containing protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] D Thicy_0314 Prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D Thicy_0324 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Thicy_1392 Glutamate-ammonia-ligase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D Thicy_1010 UPF0061 protein ydiU K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108] D Thicy_0154 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Thicy_0740 PHP domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D Thicy_1135 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Thicy_0148 TatD-related deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Thicy_1519 Peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D Thicy_1149 Septum formation protein Maf K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-] D Thicy_1673 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Thicy_1209 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Thicy_0329 YjeF-related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D Thicy_0360 UDP-N-acetylmuramate K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45] D Thicy_0584 Electron transport complex protein rnfD K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2] D Thicy_0585 Electron transport complex protein rnfC K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2] D Thicy_0586 Electron transport complex protein rnfB K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D Thicy_1528 heavy metal translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] C 99981 Carbohydrate metabolism C 99982 Energy metabolism D Thicy_1273 ferredoxin K11107 yfaE; ferredoxin D Thicy_0583 electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G D Thicy_0582 Electron transport complex protein rnfE K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E D Thicy_0587 Electron transport complex protein rnfA K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A D Thicy_0696 flavodoxin K03839 fldA; flavodoxin I C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D Thicy_1113 Glyoxalase/bleomycin resistance protein/dioxygenase K08234 yaeR; glyoxylase I family protein D Thicy_0301 protein of unknown function UPF0001 K06997 yggS; PLP dependent protein C 99986 Glycan metabolism D Thicy_0811 protein of unknown function DUF1049 K08992 lapA; lipopolysaccharide assembly protein A C 99987 Cofactor metabolism D Thicy_1628 HemY domain protein K02498 hemY; HemY protein D Thicy_0363 2-polyprenylphenol 6-hydroxylase K03688 ubiB; ubiquinone biosynthesis protein D Thicy_1512 protein of unknown function DUF526 K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK C 99988 Secondary metabolism D Thicy_1678 NADPH-dependent FMN reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone) C 99999 Others D Thicy_0153 Carboxylesterase K06999 K06999; phospholipase/carboxylesterase B B 09192 Unclassified: genetic information processing C 99973 Transcription D Thicy_1569 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein D Thicy_1393 nitrogen regulatory protein P-II K04752 glnK; nitrogen regulatory protein P-II 2 D Thicy_0674 nitrogen regulatory protein P-II K04752 glnK; nitrogen regulatory protein P-II 2 D Thicy_0826 Tex-like protein K06959 tex; protein Tex C 99974 Translation C 99975 Protein processing D Thicy_1103 ATP-dependent Clp protease adapter protein clpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D Thicy_0658 Trigger factor K03545 tig; trigger factor D Thicy_1065 SsrA-binding protein K03664 smpB; SsrA-binding protein D Thicy_1511 Mg chelatase, subunit ChlI K07391 comM; magnesium chelatase family protein D Thicy_1396 Prolyl 4-hydroxylase alpha subunit K07394 K07394; SM-20-related protein D Thicy_0104 OsmC family protein K07397 yhfA; putative redox protein D Thicy_1655 ResB family protein K07399 resB; cytochrome c biogenesis protein C 99976 Replication and repair D Thicy_0332 DNA repair protein RadC K03630 radC; DNA repair protein RadC D Thicy_0016 RmuC-domain protein K09760 rmuC; DNA recombination protein RmuC D Thicy_1355 UPF0102 protein yraN K07460 yraN; putative endonuclease D Thicy_0901 Excinuclease ABC C subunit domain protein K07461 K07461; putative endonuclease D Thicy_1518 DNA protecting protein DprA K04096 smf; DNA processing protein D Thicy_0981 AAA ATPase central domain protein K07478 ycaJ; putative ATPase D Thicy_0749 3'-5' exonuclease, PolB-like protein K07501 K07501; 3'-5' exonuclease C 99979 Viral proteins C 99998 Others D Thicy_1310 UPF0133 protein ybaB K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D Thicy_0190 major facilitator superfamily transport protein K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family D Thicy_1232 phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family D Thicy_1013 Na+/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family D Thicy_1119 sodium:neurotransmitter symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family C 99978 Cell growth D Thicy_0739 intracellular septation protein K06190 ispZ; intracellular septation protein C 99993 Cell motility D Thicy_0061 hypothetical protein K07337 K07337; penicillin-binding protein activator C 99995 Signaling proteins D Thicy_0954 UspA domain-containing protein K06149 uspA; universal stress protein A D Thicy_0033 GTP-binding protein TypA K06207 typA; GTP-binding protein D Thicy_1281 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D Thicy_0838 PhoH family protein K07175 phoH2; PhoH-like ATPase D Thicy_0869 putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase K07182 K07182; CBS domain-containing protein D Thicy_1398 SH3-like region K07184 ygiM; SH3 domain protein D Thicy_0274 UPF0234 protein yajQ K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins D Thicy_0982 outer membrane lipoprotein carrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein D Thicy_1661 VacJ family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA D Thicy_0963 outer membrane chaperone Skp (OmpH) K06142 hlpA; outer membrane protein D Thicy_0706 protein of unknown function DUF481 K07283 ydiY; putative salt-induced outer membrane protein D Thicy_0377 AsmA family protein K07289 asmA; AsmA protein D Thicy_0026 AsmA family protein K07289 asmA; AsmA protein D Thicy_0281 protein of unknown function UPF0118 K11744 tqsA; AI-2 transport protein TqsA C 99994 Others B B 09194 Poorly characterized C 99996 General function prediction only D Thicy_0494 putative FlgJ-related protein K03796 bax; Bax protein D Thicy_0176 Iron--sulfur cluster insertion protein erpA K15724 erpA; iron-sulfur cluster insertion protein D Thicy_0195 FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D Thicy_0197 FeS assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD D Thicy_1339 ribonuclease BN K07058 K07058; membrane protein D Thicy_0399 FxsA cytoplasmic membrane protein K07113 fxsA; UPF0716 protein FxsA D Thicy_1246 Fe-S metabolism associated SufE K02426 sufE; cysteine desulfuration protein SufE D Thicy_1106 High frequency lysogenization protein hflD K07153 hflD; high frequency lysogenization protein D Thicy_0518 Protein slyX K03745 slyX; SlyX protein D Thicy_0776 SecC motif-containing protein K09858 K09858; SEC-C motif domain protein D Thicy_0097 phosphate-starvation-inducible E K13256 psiE; protein PsiE C 99997 Function unknown D Thicy_1545 hypothetical protein K06888 K06888; uncharacterized protein D Thicy_1500 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein D Thicy_1128 hypothetical protein K06950 K06950; uncharacterized protein D Thicy_0187 FAD dependent oxidoreductase K06954 K06954; uncharacterized protein D Thicy_1546 peptidase membrane zinc metallopeptidase K06973 K06973; uncharacterized protein D Thicy_0497 Succinylglutamate desuccinylase/aspartoacylase K06987 K06987; uncharacterized protein D Thicy_1085 protein of unknown function UPF0227 K07000 K07000; uncharacterized protein D Thicy_1404 hypothetical protein K07018 K07018; uncharacterized protein D Thicy_0723 hypothetical protein K07028 K07028; uncharacterized protein D Thicy_0292 domain of unknown function DUF1731 K07071 K07071; uncharacterized protein D Thicy_1554 protein of unknown function DUF897 K07086 K07086; uncharacterized protein D Thicy_0276 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Thicy_0414 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Thicy_1642 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Thicy_0306 protein of unknown function DUF395 YeeE/YedE K07112 K07112; uncharacterized protein D Thicy_0034 protein of unknown function DUF395 YeeE/YedE K07112 K07112; uncharacterized protein D Thicy_0035 protein of unknown function DUF395 YeeE/YedE K07112 K07112; uncharacterized protein D Thicy_1354 hypothetical protein K07121 K07121; uncharacterized protein D Thicy_1492 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein D Thicy_0567 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein D Thicy_1495 AAA ATPase K07133 K07133; uncharacterized protein D Thicy_0550 ATPase K07133 K07133; uncharacterized protein D Thicy_0762 MOSC domain protein beta barrel domain protein K07140 K07140; MOSC domain-containing protein D Thicy_0337 UPF0161 protein yidD K08998 K08998; uncharacterized protein D Thicy_1045 hypothetical protein K09004 K09004; uncharacterized protein D Thicy_1197 hypothetical protein K09004 K09004; uncharacterized protein D Thicy_1570 hypothetical protein K09004 K09004; uncharacterized protein D Thicy_1359 hypothetical protein K09117 K09117; uncharacterized protein D Thicy_1258 UPF0250 protein ybeD K09158 K09158; uncharacterized protein D Thicy_0703 protein of unknown function UPF0153 K09160 K09160; uncharacterized protein D Thicy_0186 protein of unknown function DUF1365 K09701 K09701; uncharacterized protein D Thicy_0524 UPF0178 protein yaiI K09768 K09768; uncharacterized protein D Thicy_0738 YCII-related protein K09780 K09780; uncharacterized protein D Thicy_1088 UPF0434 protein ycaR K09791 K09791; uncharacterized protein D Thicy_1510 hypothetical protein K09792 K09792; uncharacterized protein D Thicy_1063 protein of unknown function UPF0125 K09801 K09801; uncharacterized protein D Thicy_0898 protein of unknown function DUF497 K09803 K09803; uncharacterized protein D Thicy_1262 UPF0246 protein yaaA K09861 K09861; uncharacterized protein D Thicy_1159 YgfB and YecA K09895 K09895; uncharacterized protein D Thicy_0082 UPF0745 protein ycgL K09902 K09902; uncharacterized protein D Thicy_0569 Protein of unknown function DUF2058 K09912 K09912; uncharacterized protein D Thicy_0844 protein of unknown function DUF482 K09919 K09919; uncharacterized protein D Thicy_0371 protein of unknown function DUF484 K09921 K09921; uncharacterized protein D Thicy_1096 Protein of unknown function DUF2062 K09928 K09928; uncharacterized protein D Thicy_0756 Protein of unknown function DUF2062 K09928 K09928; uncharacterized protein D Thicy_0515 Protein of unknown function DUF2065 K09937 K09937; uncharacterized protein D Thicy_0594 Protein of unknown function DUF2066 K09938 K09938; uncharacterized protein D Thicy_0761 protein of unknown function DUF1415 K09941 K09941; uncharacterized protein D Thicy_0845 hypothetical protein K09954 K09954; uncharacterized protein D Thicy_0343 Protein of unknown function DUF2237 K09966 K09966; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: April 27, 2024