+D GENES KO
#
KEGG Orthology (KO) - Thermincola potens
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:tjr00010]
D TherJR_2721 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D TherJR_2723 bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8]
D TherJR_2326 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D TherJR_2349 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D TherJR_2914 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D TherJR_2917 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D TherJR_2709 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D TherJR_2711 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D TherJR_2710 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D TherJR_2708 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D TherJR_2707 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D TherJR_2325 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D TherJR_2400 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D TherJR_1678 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D TherJR_0076 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D TherJR_1677 thiamine pyrophosphate protein domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D TherJR_0077 thiamine pyrophosphate protein domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D TherJR_0751 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D TherJR_1111 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D TherJR_0855 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D TherJR_0368 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_0370 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_0371 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_1681 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_2691 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_1917 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00020 Citrate cycle (TCA cycle) [PATH:tjr00020]
D TherJR_2610 Citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D TherJR_2355 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D TherJR_0875 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D TherJR_1678 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D TherJR_0076 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D TherJR_1677 thiamine pyrophosphate protein domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D TherJR_0077 thiamine pyrophosphate protein domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D TherJR_1676 Pyruvate/ketoisovalerate oxidoreductase K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D TherJR_0078 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D TherJR_1679 4Fe-4S ferredoxin iron-sulfur binding domain protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D TherJR_0079 4Fe-4S ferredoxin iron-sulfur binding domain protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D TherJR_2596 4Fe-4S ferredoxin iron-sulfur binding domain protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D TherJR_1504 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D TherJR_1505 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
C 00030 Pentose phosphate pathway [PATH:tjr00030]
D TherJR_2723 bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8]
D TherJR_1785 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D TherJR_2764 Transketolase central region K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D TherJR_2765 Transketolase domain protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D TherJR_2915 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D TherJR_2899 sugar-phosphate isomerase, RpiB/LacA/LacB family K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D TherJR_2670 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D TherJR_1665 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D TherJR_0132 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D TherJR_2255 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D TherJR_2254 PfkB domain protein K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D TherJR_2264 Aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D TherJR_0856 Aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D TherJR_2501 Aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D TherJR_2507 Aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D TherJR_2917 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D TherJR_2914 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D TherJR_2326 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D TherJR_2349 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:tjr00040]
D TherJR_2671 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D TherJR_1785 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D TherJR_2057 class II aldolase/adducin family protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:tjr00051]
D TherJR_2723 bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8]
D TherJR_0884 Nucleotidyl transferase K16881 K16881; mannose-1-phosphate guanylyltransferase / phosphomannomutase [EC:2.7.7.13 5.4.2.8]
D TherJR_2183 Nucleotidyl transferase K16881 K16881; mannose-1-phosphate guanylyltransferase / phosphomannomutase [EC:2.7.7.13 5.4.2.8]
D TherJR_2830 Mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D TherJR_2851 Nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D TherJR_2057 class II aldolase/adducin family protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D TherJR_2326 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D TherJR_2349 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D TherJR_2914 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D TherJR_2917 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D TherJR_2709 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D TherJR_2899 sugar-phosphate isomerase, RpiB/LacA/LacB family K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
C 00052 Galactose metabolism [PATH:tjr00052]
D TherJR_2835 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D TherJR_0105 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D TherJR_2671 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D TherJR_2721 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D TherJR_2326 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D TherJR_2349 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00053 Ascorbate and aldarate metabolism
C 00500 Starch and sucrose metabolism [PATH:tjr00500]
D TherJR_2671 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D TherJR_2362 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21]
D TherJR_2367 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21]
D TherJR_2184 Domain of unknown function DUF1957 K16149 K16149; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D TherJR_0885 Domain of unknown function DUF1957 K16149 K16149; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D TherJR_0908 glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D TherJR_1114 alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D TherJR_2725 glycoside hydrolase 15-related protein K01178 SGA1; glucoamylase [EC:3.2.1.3]
D TherJR_2672 glycosyl transferase group 1 K13057 treT; trehalose synthase [EC:2.4.1.245]
D TherJR_2673 trehalose-phosphatase K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12]
D TherJR_2674 Alpha,alpha-trehalose-phosphate synthase (UDP-forming) K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12]
D TherJR_2721 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D TherJR_2723 bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:tjr00520]
D TherJR_2178 N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D TherJR_0380 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D TherJR_0379 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D TherJR_0131 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D TherJR_2157 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D TherJR_0162 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D TherJR_2158 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D TherJR_2896 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D TherJR_2090 nucleotide sugar dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D TherJR_2786 UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing K18429 legG; GDP/UDP-N,N'-diacetylbacillosamine 2-epimerase (hydrolysing) [EC:3.2.1.184]
D TherJR_2780 N-acetylneuraminate synthase K18430 legI; N,N'-diacetyllegionaminate synthase [EC:2.5.1.101]
D TherJR_2721 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D TherJR_2671 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D TherJR_2835 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D TherJR_0105 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D TherJR_2723 bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8]
D TherJR_0884 Nucleotidyl transferase K16881 K16881; mannose-1-phosphate guanylyltransferase / phosphomannomutase [EC:2.7.7.13 5.4.2.8]
D TherJR_2183 Nucleotidyl transferase K16881 K16881; mannose-1-phosphate guanylyltransferase / phosphomannomutase [EC:2.7.7.13 5.4.2.8]
D TherJR_2851 Nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D TherJR_2830 Mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
C 00620 Pyruvate metabolism [PATH:tjr00620]
D TherJR_0368 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_0370 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_0371 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_1681 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_2691 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_1917 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_1678 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D TherJR_0076 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D TherJR_1677 thiamine pyrophosphate protein domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D TherJR_0077 thiamine pyrophosphate protein domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D TherJR_0047 acetaldehyde dehydrogenase (acetylating) K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10]
D TherJR_1111 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D TherJR_0855 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D TherJR_0613 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D TherJR_0049 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D TherJR_2082 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D TherJR_0625 Propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8]
D TherJR_0048 Propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8]
D TherJR_2325 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D TherJR_2327 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D TherJR_1719 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D TherJR_2328 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D TherJR_0751 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D TherJR_1208 Hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D TherJR_2601 Zn-dependent hydrolase-like glyoxylase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D TherJR_2379 conserved hypothetical protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D TherJR_1764 Protein of unknown function DUF2088 K22373 larA; lactate racemase [EC:5.1.2.1]
D TherJR_1506 Malate dehydrogenase (oxaloacetate-decarboxylating) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D TherJR_1720 oxaloacetate decarboxylase alpha subunit K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D TherJR_1504 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D TherJR_1505 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D TherJR_2400 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D TherJR_0363 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D TherJR_0367 2-isopropylmalate synthase/homocitrate synthase family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D TherJR_0874 homocitrate synthase K02594 nifV; homocitrate synthase NifV [EC:2.3.3.14]
D TherJR_0701 pyruvate carboxyltransferase K02594 nifV; homocitrate synthase NifV [EC:2.3.3.14]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:tjr00630]
D TherJR_0368 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_0370 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_0371 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_1681 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_2691 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_1917 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_2610 Citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D TherJR_2355 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D TherJR_0060 Haloacid dehalogenase domain protein hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D TherJR_0709 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D TherJR_0710 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D TherJR_2898 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D TherJR_2255 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D TherJR_0769 molybdopterin oxidoreductase Fe4S4 region K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D TherJR_0744 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D TherJR_0770 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D TherJR_1820 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D TherJR_2235 molybdopterin oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D TherJR_1819 4Fe-4S ferredoxin iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D TherJR_0771 4Fe-4S ferredoxin iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D TherJR_0767 4Fe-4S ferredoxin iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D TherJR_1634 4Fe-4S ferredoxin iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D TherJR_1818 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
C 00640 Propanoate metabolism [PATH:tjr00640]
D TherJR_0368 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_0370 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_0371 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_1681 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_2691 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_1917 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_0613 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D TherJR_0049 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D TherJR_2082 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D TherJR_0625 Propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8]
D TherJR_0048 Propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8]
D TherJR_2327 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D TherJR_1719 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D TherJR_2328 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D TherJR_0751 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D TherJR_0633 iron-containing alcohol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
D TherJR_0618 Glycerol dehydratase K01699 pduC; propanediol dehydratase large subunit [EC:4.2.1.28]
D TherJR_0619 dehydratase medium subunit K13919 pduD; propanediol dehydratase medium subunit [EC:4.2.1.28]
D TherJR_0620 dehydratase small subunit K13920 pduE; propanediol dehydratase small subunit [EC:4.2.1.28]
D TherJR_0630 Aldehyde Dehydrogenase K13922 pduP; propionaldehyde dehydrogenase [EC:1.2.1.87]
C 00650 Butanoate metabolism [PATH:tjr00650]
D TherJR_2411 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D TherJR_1683 Phosphate butyryltransferase K00634 ptb; phosphate butyryltransferase [EC:2.3.1.19]
D TherJR_0047 acetaldehyde dehydrogenase (acetylating) K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10]
D TherJR_1111 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D TherJR_1678 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D TherJR_0076 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D TherJR_1677 thiamine pyrophosphate protein domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D TherJR_0077 thiamine pyrophosphate protein domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D TherJR_0360 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D TherJR_0361 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:tjr00660]
D TherJR_0360 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D TherJR_0361 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D TherJR_0364 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D TherJR_0365 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D TherJR_0366 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism
D TherJR_2709 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:tjr00190]
D TherJR_2037 NADH-quinone oxidoreductase, B subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D TherJR_2036 NADH (or F420H2) dehydrogenase, subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D TherJR_2035 NADH dehydrogenase I, D subunit K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D TherJR_0740 NADH-quinone oxidoreductase, E subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D TherJR_1017 NADH dehydrogenase (ubiquinone) 24 kDa subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D TherJR_0741 NADH dehydrogenase (quinone) K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D TherJR_2095 hydrogenase, Fe-only K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D TherJR_2236 NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding protein K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D TherJR_2034 NADH dehydrogenase (quinone) K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D TherJR_2033 NADH-quinone oxidoreductase, chain I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D TherJR_2032 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D TherJR_2030 proton-translocating NADH-quinone oxidoreductase, chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D TherJR_2029 proton-translocating NADH-quinone oxidoreductase, chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D TherJR_2028 proton-translocating NADH-quinone oxidoreductase, chain N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D TherJR_2038 NADH-ubiquinone/plastoquinone oxidoreductase chain 3 K05574 ndhC; NAD(P)H-quinone oxidoreductase subunit 3 [EC:7.1.1.2]
D TherJR_2031 NADH-ubiquinone oxidoreductase chain 4L K05576 ndhE; NAD(P)H-quinone oxidoreductase subunit 4L [EC:7.1.1.2]
D TherJR_1015 4Fe-4S ferredoxin iron-sulfur binding domain protein K05588 hoxU; bidirectional [NiFe] hydrogenase diaphorase subunit [EC:7.1.1.2]
D TherJR_0852 cytochrome bd ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D TherJR_0853 cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D TherJR_2889 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D TherJR_2887 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D TherJR_2888 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D TherJR_2890 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D TherJR_2886 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D TherJR_2893 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D TherJR_2891 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D TherJR_2892 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D TherJR_2730 Inorganic diphosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1]
D TherJR_2321 HAD-superfamily hydrolase, subfamily IA, variant 3 K06019 ppaX; pyrophosphatase PpaX [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes [PATH:tjr00720]
D TherJR_2400 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D TherJR_1504 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D TherJR_1505 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D TherJR_1678 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D TherJR_0076 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D TherJR_1677 thiamine pyrophosphate protein domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D TherJR_0077 thiamine pyrophosphate protein domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D TherJR_1676 Pyruvate/ketoisovalerate oxidoreductase K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D TherJR_0078 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D TherJR_1679 4Fe-4S ferredoxin iron-sulfur binding domain protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D TherJR_0079 4Fe-4S ferredoxin iron-sulfur binding domain protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D TherJR_2596 4Fe-4S ferredoxin iron-sulfur binding domain protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D TherJR_0875 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D TherJR_2355 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D TherJR_2327 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D TherJR_1719 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D TherJR_2328 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D TherJR_0942 formate dehydrogenase, alpha subunit K05299 fdhA; formate dehydrogenase (NADP+) alpha subunit [EC:1.17.1.10]
D TherJR_0670 formate dehydrogenase, alpha subunit K05299 fdhA; formate dehydrogenase (NADP+) alpha subunit [EC:1.17.1.10]
D TherJR_1706 Methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D TherJR_1709 Methylenetetrahydrofolate dehydrogenase (NADP(+)) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D TherJR_2661 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D TherJR_1165 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D TherJR_1161 dihydropteroate synthase DHPS K15023 acsE; 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase [EC:2.1.1.258]
D TherJR_2629 dihydropteroate synthase DHPS K15023 acsE; 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase [EC:2.1.1.258]
D TherJR_2947 Tetrahydromethanopterin S-methyltransferase K25221 mtgA; [methyl-Co(III) glycine betaine-specific corrinoid protein]---tetrahydrofolate methyltransferase [EC:2.1.1.378]
D TherJR_2144 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D TherJR_2959 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D TherJR_1937 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D TherJR_1157 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D TherJR_1938 4Fe-4S ferredoxin iron-sulfur binding domain protein K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D TherJR_2960 4Fe-4S ferredoxin iron-sulfur binding domain protein K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D TherJR_0713 4Fe-4S ferredoxin iron-sulfur binding domain protein K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D TherJR_2508 4Fe-4S ferredoxin iron-sulfur binding domain protein K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D TherJR_1158 CO dehydrogenase/acetyl-CoA synthase complex, beta subunit K14138 acsB; acetyl-CoA synthase [EC:2.3.1.169]
D TherJR_1159 CO dehydrogenase/acetyl-CoA synthase delta subunit, TIM barrel K00197 cdhE; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit gamma [EC:2.1.1.245]
D TherJR_1160 CO dehydrogenase/acetyl-CoA synthase delta subunit, TIM barrel K00194 cdhD; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit delta [EC:2.1.1.245]
D TherJR_2082 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D TherJR_0625 Propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8]
D TherJR_0048 Propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8]
D TherJR_0613 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D TherJR_0049 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D TherJR_0368 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_0370 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_0371 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_1681 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_2691 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_1917 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:tjr00680]
D TherJR_0769 molybdopterin oxidoreductase Fe4S4 region K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D TherJR_0744 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D TherJR_0770 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D TherJR_1820 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D TherJR_2235 molybdopterin oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D TherJR_1819 4Fe-4S ferredoxin iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D TherJR_0771 4Fe-4S ferredoxin iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D TherJR_0767 4Fe-4S ferredoxin iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D TherJR_1634 4Fe-4S ferredoxin iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D TherJR_1818 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D TherJR_2471 molybdopterin oxidoreductase K22516 fdhA; formate dehydrogenase (coenzyme F420) alpha subunit [EC:1.17.98.3 1.8.98.6]
D TherJR_0939 coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein K00125 fdhB; formate dehydrogenase (coenzyme F420) beta subunit [EC:1.17.98.3 1.8.98.6]
D TherJR_1951 coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein K00125 fdhB; formate dehydrogenase (coenzyme F420) beta subunit [EC:1.17.98.3 1.8.98.6]
D TherJR_0942 formate dehydrogenase, alpha subunit K05299 fdhA; formate dehydrogenase (NADP+) alpha subunit [EC:1.17.1.10]
D TherJR_0670 formate dehydrogenase, alpha subunit K05299 fdhA; formate dehydrogenase (NADP+) alpha subunit [EC:1.17.1.10]
D TherJR_1159 CO dehydrogenase/acetyl-CoA synthase delta subunit, TIM barrel K00197 cdhE; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit gamma [EC:2.1.1.245]
D TherJR_1160 CO dehydrogenase/acetyl-CoA synthase delta subunit, TIM barrel K00194 cdhD; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit delta [EC:2.1.1.245]
D TherJR_2144 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D TherJR_2959 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D TherJR_1937 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D TherJR_1157 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D TherJR_1938 4Fe-4S ferredoxin iron-sulfur binding domain protein K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D TherJR_2960 4Fe-4S ferredoxin iron-sulfur binding domain protein K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D TherJR_0713 4Fe-4S ferredoxin iron-sulfur binding domain protein K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D TherJR_2508 4Fe-4S ferredoxin iron-sulfur binding domain protein K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D TherJR_2898 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D TherJR_2707 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D TherJR_2917 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D TherJR_2914 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D TherJR_2326 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D TherJR_2349 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D TherJR_0991 ferredoxin-dependent glutamate synthase K22083 mgsC; methylamine---glutamate N-methyltransferase subunit C [EC:2.1.1.21]
D TherJR_1737 formylmethanofuran dehydrogenase subunit E region K11261 fwdE; formylmethanofuran dehydrogenase subunit E [EC:1.2.7.12]
D TherJR_1238 formylmethanofuran dehydrogenase subunit E region K11261 fwdE; formylmethanofuran dehydrogenase subunit E [EC:1.2.7.12]
D TherJR_1236 formylmethanofuran dehydrogenase subunit E region K11261 fwdE; formylmethanofuran dehydrogenase subunit E [EC:1.2.7.12]
D TherJR_0145 Tetrahydromethanopterin S-methyltransferase K00584 mtrH; tetrahydromethanopterin S-methyltransferase subunit H [EC:7.2.1.4]
D TherJR_0981 Tetrahydromethanopterin S-methyltransferase K00584 mtrH; tetrahydromethanopterin S-methyltransferase subunit H [EC:7.2.1.4]
D TherJR_0937 4Fe-4S ferredoxin iron-sulfur binding domain protein K03388 hdrA2; heterodisulfide reductase subunit A2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6]
D TherJR_1953 4Fe-4S ferredoxin iron-sulfur binding domain protein K03388 hdrA2; heterodisulfide reductase subunit A2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6]
D TherJR_1166 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K03388 hdrA2; heterodisulfide reductase subunit A2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6]
D TherJR_1776 CoB--CoM heterodisulfide reductase K03389 hdrB2; heterodisulfide reductase subunit B2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6]
D TherJR_1954 CoB--CoM heterodisulfide reductase K03389 hdrB2; heterodisulfide reductase subunit B2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6]
D TherJR_1777 putative heterodisulfide reductase, C subunit K03390 hdrC2; heterodisulfide reductase subunit C2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6]
D TherJR_1955 putative heterodisulfide reductase, C subunit K03390 hdrC2; heterodisulfide reductase subunit C2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6]
D TherJR_0938 methyl-viologen-reducing hydrogenase delta subunit K14127 mvhD; F420-non-reducing hydrogenase iron-sulfur subunit [EC:1.12.99.- 1.8.98.5 1.8.98.6]
D TherJR_1163 methyl-viologen-reducing hydrogenase delta subunit K14127 mvhD; F420-non-reducing hydrogenase iron-sulfur subunit [EC:1.12.99.- 1.8.98.5 1.8.98.6]
D TherJR_1952 methyl-viologen-reducing hydrogenase delta subunit K14127 mvhD; F420-non-reducing hydrogenase iron-sulfur subunit [EC:1.12.99.- 1.8.98.5 1.8.98.6]
D TherJR_0613 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D TherJR_0049 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D TherJR_2082 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D TherJR_0368 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_0370 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_0371 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_1681 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_2691 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_1917 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_2708 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D TherJR_0013 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D TherJR_0012 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D TherJR_1313 Phosphoglycerate mutase K22305 psp; phosphoserine phosphatase [EC:3.1.3.3]
D TherJR_0979 methyltransferase MtaA/CmuA family K14080 mtaA; [methyl-Co(III) methanol/glycine betaine-specific corrinoid protein]:coenzyme M methyltransferase [EC:2.1.1.246 2.1.1.377]
D TherJR_0982 methyltransferase MtaA/CmuA family K14080 mtaA; [methyl-Co(III) methanol/glycine betaine-specific corrinoid protein]:coenzyme M methyltransferase [EC:2.1.1.246 2.1.1.377]
D TherJR_0470 methyltransferase MtaA/CmuA family K14080 mtaA; [methyl-Co(III) methanol/glycine betaine-specific corrinoid protein]:coenzyme M methyltransferase [EC:2.1.1.246 2.1.1.377]
D TherJR_0987 methanol:cobalamin methyltransferase, subunit B K04480 mtaB; methanol---5-hydroxybenzimidazolylcobamide Co-methyltransferase [EC:2.1.1.90]
D TherJR_0988 methyltransferase cognate corrinoid protein K14081 mtaC; methanol corrinoid protein
D TherJR_0986 cobalamin B12-binding domain protein K14081 mtaC; methanol corrinoid protein
D TherJR_0057 trimethylamine methyltransferase K14083 mttB; trimethylamine---corrinoid protein Co-methyltransferase [EC:2.1.1.250]
D TherJR_0028 trimethylamine methyltransferase K14083 mttB; trimethylamine---corrinoid protein Co-methyltransferase [EC:2.1.1.250]
D TherJR_2944 cobalamin B12-binding domain protein K14084 mttC; trimethylamine corrinoid protein
D TherJR_0983 methyltransferase cognate corrinoid protein K14084 mttC; trimethylamine corrinoid protein
D TherJR_0984 cobalamin B12-binding domain protein K14084 mttC; trimethylamine corrinoid protein
D TherJR_1470 Phosphosulfolactate synthase K08097 comA; phosphosulfolactate synthase [EC:4.4.1.19]
D TherJR_1469 2-phosphosulfolactate phosphatase K05979 comB; 2-phosphosulfolactate phosphatase [EC:3.1.3.71]
C 00910 Nitrogen metabolism [PATH:tjr00910]
D TherJR_1198 Nitrite reductase (cytochrome; ammonia-forming) K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
D TherJR_1197 NapC/NirT cytochrome c domain protein K15876 nrfH; cytochrome c nitrite reductase small subunit
D TherJR_0510 NapC/NirT family cyctochrome C K15876 nrfH; cytochrome c nitrite reductase small subunit
D TherJR_0233 hypothetical protein K15876 nrfH; cytochrome c nitrite reductase small subunit
D TherJR_0691 nitrogenase molybdenum-iron protein alpha chain K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1]
D TherJR_0692 nitrogenase molybdenum-iron protein beta chain K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]
D TherJR_0688 nitrogenase iron protein K02588 nifH; nitrogenase iron protein NifH
D TherJR_2940 hybrid cluster protein K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D TherJR_2072 2-nitropropane dioxygenase NPD K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D TherJR_0709 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D TherJR_0710 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D TherJR_1707 glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D TherJR_2188 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D TherJR_0949 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:tjr00920]
D TherJR_0502 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D TherJR_1474 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D TherJR_2253 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D TherJR_2470 NMT1/THI5 like domain protein K15553 ssuA; sulfonate transport system substrate-binding protein
D TherJR_1290 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D TherJR_0503 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D TherJR_2251 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D TherJR_2469 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D TherJR_1473 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D TherJR_1472 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D TherJR_2252 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D TherJR_0504 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D TherJR_2468 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D TherJR_2247 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D TherJR_2250 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D TherJR_1379 phosphoesterase RecJ domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D TherJR_2249 HI0933 family protein K00394 aprA; adenylylsulfate reductase, subunit A [EC:1.8.99.2]
D TherJR_2248 4Fe-4S ferredoxin iron-sulfur binding domain protein K00395 aprB; adenylylsulfate reductase, subunit B [EC:1.8.99.2]
D TherJR_0452 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D TherJR_0269 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D TherJR_0776 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D TherJR_2243 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D TherJR_2227 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:tjr00061]
D TherJR_2327 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D TherJR_1719 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D TherJR_2328 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D TherJR_2073 acyl carrier protein K02078 acpP; acyl carrier protein
D TherJR_2075 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D TherJR_2077 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D TherJR_2071 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D TherJR_2074 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D TherJR_2822 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D TherJR_2076 enoyl-(acyl-carrier-protein) reductase II K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
D TherJR_2695 o-succinylbenzoate--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D TherJR_2696 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:tjr00071]
D TherJR_2695 o-succinylbenzoate--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D TherJR_2696 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D TherJR_1111 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D TherJR_0855 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:tjr00561]
D TherJR_0633 iron-containing alcohol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
D TherJR_2078 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D TherJR_1581 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D TherJR_1591 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D TherJR_2177 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D TherJR_1332 Monogalactosyldiacylglycerol synthase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315]
D TherJR_0474 Monogalactosyldiacylglycerol synthase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315]
D TherJR_1412 sulfatase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
D TherJR_2850 sulfatase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
C 00564 Glycerophospholipid metabolism [PATH:tjr00564]
D TherJR_1580 Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D TherJR_1581 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D TherJR_1591 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D TherJR_2177 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D TherJR_0036 Ethanolamine utilization EutA K04019 eutA; ethanolamine utilization protein EutA
D TherJR_0034 Ethanolamine ammonia-lyase K03735 eutB; ethanolamine ammonia-lyase large subunit [EC:4.3.1.7]
D TherJR_0035 Ethanolamine ammonia-lyase K03736 eutC; ethanolamine ammonia-lyase small subunit [EC:4.3.1.7]
D TherJR_1363 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D TherJR_1957 CDP-diacylglycerol/serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D TherJR_1958 phosphatidylserine decarboxylase related protein K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D TherJR_1434 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D TherJR_0909 phospholipase D/Transphosphatidylase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D TherJR_1964 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:tjr00230]
D TherJR_1336 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D TherJR_1665 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D TherJR_0132 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D TherJR_0827 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D TherJR_0831 phosphoribosylamine/glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D TherJR_0829 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D TherJR_0822 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D TherJR_0828 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D TherJR_0824 phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D TherJR_0826 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D TherJR_0825 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D TherJR_0830 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D TherJR_1929 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D TherJR_1664 purine nucleoside phosphorylase I, inosine and guanosine-specific K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D TherJR_2130 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D TherJR_0786 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D TherJR_1319 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D TherJR_0206 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D TherJR_2566 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D TherJR_0876 xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D TherJR_0787 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D TherJR_1809 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D TherJR_2141 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D TherJR_2305 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D TherJR_1206 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D TherJR_0196 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D TherJR_2971 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D TherJR_1315 adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2]
D TherJR_1281 metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D TherJR_1985 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D TherJR_2250 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D TherJR_2247 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D TherJR_0607 urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D TherJR_0606 urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D TherJR_0605 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00240 Pyrimidine metabolism [PATH:tjr00240]
D TherJR_0352 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D TherJR_1830 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D TherJR_1831 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D TherJR_1833 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D TherJR_1832 dihydroorotase, multifunctional complex type K01465 URA4; dihydroorotase [EC:3.5.2.3]
D TherJR_1828 dihydroorotate dehydrogenase family protein K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D TherJR_1829 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulfur cluster binding domain protein K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit
D TherJR_1826 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D TherJR_1827 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D TherJR_1358 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D TherJR_0206 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D TherJR_2548 maf protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D TherJR_2922 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D TherJR_1592 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D TherJR_1929 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D TherJR_1834 phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D TherJR_1281 metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D TherJR_1663 pyrimidine-nucleoside phosphorylase K00756 pdp; pyrimidine-nucleoside phosphorylase [EC:2.4.2.2]
D TherJR_2419 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D TherJR_2141 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D TherJR_2897 CMP/dCMP deaminase zinc-binding protein K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D TherJR_0085 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D TherJR_1393 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D TherJR_0272 thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:tjr00250]
D TherJR_2387 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D TherJR_0218 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D TherJR_0665 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D TherJR_0354 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D TherJR_0356 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D TherJR_2971 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D TherJR_0825 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D TherJR_1833 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D TherJR_1707 glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D TherJR_0709 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D TherJR_0710 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D TherJR_0352 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D TherJR_1830 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D TherJR_1831 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D TherJR_0380 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D TherJR_0827 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:tjr00260]
D TherJR_1400 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D TherJR_0357 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D TherJR_1399 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D TherJR_2114 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D TherJR_2113 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D TherJR_0030 aminoglycoside phosphotransferase K02204 thrB2; homoserine kinase type II [EC:2.7.1.39]
D TherJR_0056 aminoglycoside phosphotransferase K02204 thrB2; homoserine kinase type II [EC:2.7.1.39]
D TherJR_0934 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D TherJR_2416 aromatic amino acid beta-eliminating lyase/threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D TherJR_2898 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D TherJR_2708 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D TherJR_0013 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D TherJR_0012 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D TherJR_1313 Phosphoglycerate mutase K22305 psp; phosphoserine phosphatase [EC:3.1.3.3]
D TherJR_1957 CDP-diacylglycerol/serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D TherJR_2945 trimethylamine methyltransferase K25220 mtgB; glycine betaine---corrinoid protein Co-methyltransferase [EC:2.1.1.376]
D TherJR_2506 Methyltransferase type 11 K18896 gsmt; glycine/sarcosine N-methyltransferase [EC:2.1.1.156]
D TherJR_1601 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D TherJR_1602 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:tjr00270]
D TherJR_0269 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D TherJR_0776 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D TherJR_2243 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D TherJR_0027 Methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D TherJR_0059 dihydropteroate synthase DHPS K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D TherJR_1806 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D TherJR_1778 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D TherJR_1056 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D TherJR_2023 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D TherJR_1859 hypothetical protein K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D TherJR_2130 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D TherJR_2056 amidohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D TherJR_2060 methylthioadenosine phosphorylase K19696 mtiP; 5'-methylthioinosine phosphorylase [EC:2.4.2.44]
D TherJR_2059 translation initiation factor, aIF-2BI family K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D TherJR_2058 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D TherJR_1400 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D TherJR_0357 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D TherJR_1399 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D TherJR_2114 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D TherJR_1173 protein of unknown function DUF39 K23975 E2.8.1.16; L-aspartate semialdehyde sulfurtransferase [EC:2.8.1.16]
D TherJR_1174 NIL domain protein K23976 K23976; L-aspartate semialdehyde sulfurtransferase ferredoxin
D TherJR_2227 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D TherJR_2270 O-acetylhomoserine aminocarboxypropyltransferase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D TherJR_2226 O-acetylhomoserine/O-acetylserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D TherJR_0358 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D TherJR_2969 Branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D TherJR_2387 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D TherJR_0452 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D TherJR_0751 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D TherJR_1704 cysteine synthase K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D TherJR_0013 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D TherJR_0012 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:tjr00280]
D TherJR_0358 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D TherJR_2969 Branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:tjr00290]
D TherJR_0364 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D TherJR_0365 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D TherJR_0366 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D TherJR_0360 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D TherJR_0361 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D TherJR_0362 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D TherJR_0359 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D TherJR_0358 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D TherJR_2969 Branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D TherJR_0363 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D TherJR_0367 2-isopropylmalate synthase/homocitrate synthase family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:tjr00300]
D TherJR_2114 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D TherJR_1400 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D TherJR_0357 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D TherJR_1399 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D TherJR_1401 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D TherJR_1396 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D TherJR_0351 acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D TherJR_1814 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D TherJR_1813 LL-diaminopimelate aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D TherJR_1284 aminotransferase class I and II K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D TherJR_1641 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D TherJR_2165 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D TherJR_2164 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D TherJR_1759 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D TherJR_0023 Radical SAM domain protein K16180 pylB; methylornithine synthase [EC:5.4.99.58]
D TherJR_0024 protein of unknown function DUF201 K16181 pylC; 3-methylornithine--L-lysine ligase [EC:6.3.2.59]
D TherJR_0025 FAD dependent oxidoreductase K16182 pylD; 3-methylornithyl-N6-L-lysine dehydrogenase [EC:1.4.1.-]
C 00310 Lysine degradation
C 00220 Arginine biosynthesis [PATH:tjr00220]
D TherJR_0353 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D TherJR_0354 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D TherJR_0356 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D TherJR_0607 urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D TherJR_0606 urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D TherJR_0605 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D TherJR_0709 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D TherJR_0710 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D TherJR_2387 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D TherJR_2288 GCN5-related N-acetyltransferase K00619 argA; amino-acid N-acetyltransferase [EC:2.3.1.1]
D TherJR_0347 arginine biosynthesis bifunctional protein ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D TherJR_0350 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D TherJR_0346 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D TherJR_0351 acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:tjr00330]
D TherJR_2259 Creatininase K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10]
D TherJR_0084 Orn/Lys/Arg decarboxylase major region K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D TherJR_0604 arginine decarboxylase, pyruvoyl-dependent K02626 pdaD; arginine decarboxylase [EC:4.1.1.19]
D TherJR_1055 arginine decarboxylase, pyruvoyl-dependent K02626 pdaD; arginine decarboxylase [EC:4.1.1.19]
D TherJR_1057 agmatinase K01480 speB; agmatinase [EC:3.5.3.11]
D TherJR_1056 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D TherJR_2023 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D TherJR_1778 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D TherJR_0603 Arginase/agmatinase/formiminoglutamase K12255 gbuA; guanidinobutyrase [EC:3.5.3.7]
D TherJR_1099 Acetamidase/Formamidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D TherJR_2122 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D TherJR_2518 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D TherJR_2517 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D TherJR_2387 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:tjr00340]
D TherJR_0835 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D TherJR_0834 histidyl-tRNA synthetase 2 K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit
D TherJR_0842 phosphoribosyl-ATP diphosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D TherJR_0840 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D TherJR_0839 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D TherJR_0841 imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D TherJR_0838 Imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D TherJR_0837 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D TherJR_0639 histidinol phosphate phosphatase HisJ family K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
D TherJR_2172 histidinol phosphate phosphatase HisJ family K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
D TherJR_1575 histidinol phosphate phosphatase HisJ family K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
D TherJR_0836 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
C 00350 Tyrosine metabolism [PATH:tjr00350]
D TherJR_2387 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D TherJR_0837 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D TherJR_1111 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D TherJR_0855 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D TherJR_2256 2-dehydro-3-deoxyglucarate aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]
C 00360 Phenylalanine metabolism [PATH:tjr00360]
D TherJR_2928 AMP-dependent synthetase and ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D TherJR_0735 Phenylacetate--CoA ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D TherJR_2408 Phenylacetate--CoA ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D TherJR_2389 thioesterase superfamily protein K02614 paaI; acyl-CoA thioesterase [EC:3.1.2.-]
D TherJR_2411 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D TherJR_2387 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D TherJR_0837 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D TherJR_1099 Acetamidase/Formamidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00380 Tryptophan metabolism
D TherJR_1099 Acetamidase/Formamidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:tjr00400]
D TherJR_1599 phospho-2-dehydro-3-deoxyheptonate aldolase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D TherJR_0071 phospho-2-dehydro-3-deoxyheptonate aldolase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D TherJR_1600 phospho-2-dehydro-3-deoxyheptonate aldolase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D TherJR_1740 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D TherJR_1733 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D TherJR_1756 shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D TherJR_1741 Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D TherJR_1597 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D TherJR_1742 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D TherJR_1607 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D TherJR_1606 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D TherJR_1605 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D TherJR_1603 Phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D TherJR_1604 Indole-3-glycerol-phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D TherJR_1601 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D TherJR_1602 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D TherJR_1608 chorismate mutase K06208 aroH; chorismate mutase [EC:5.4.99.5]
D TherJR_2115 amino acid-binding ACT domain protein K06209 pheB; chorismate mutase [EC:5.4.99.5]
D TherJR_1598 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D TherJR_0072 Prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D TherJR_2387 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D TherJR_0837 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:tjr00410]
D TherJR_0216 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D TherJR_0215 pantoate/beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
C 00430 Taurine and hypotaurine metabolism [PATH:tjr00430]
D TherJR_2082 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D TherJR_0625 Propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8]
D TherJR_0048 Propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8]
D TherJR_0613 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D TherJR_0049 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:tjr00450]
D TherJR_0027 Methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D TherJR_0059 dihydropteroate synthase DHPS K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D TherJR_2211 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D TherJR_1962 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D TherJR_2247 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D TherJR_0753 selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D TherJR_0752 L-seryl-tRNA selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D TherJR_0094 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism
D TherJR_2898 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:tjr00470]
D TherJR_0657 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D TherJR_1176 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D TherJR_1113 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D TherJR_2162 UDP-N-acetylmuramoylalanine/D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D TherJR_2258 Mandelate racemase/muconate lactonizing protein K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25]
D TherJR_1814 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D TherJR_1641 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:tjr00480]
D TherJR_0875 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D TherJR_1056 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D TherJR_2023 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis [PATH:tjr00542]
D TherJR_2821 Glycosyl transferase, family 4, conserved region K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D TherJR_1685 conserved hypothetical protein K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:tjr00541]
D TherJR_2671 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D TherJR_2835 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D TherJR_0105 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D TherJR_0494 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D TherJR_0906 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D TherJR_0495 TDP-4-keto-6-deoxy-D-glucose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
D TherJR_2830 Mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D TherJR_0131 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D TherJR_2896 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D TherJR_2090 nucleotide sugar dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
C 00550 Peptidoglycan biosynthesis [PATH:tjr00550]
D TherJR_2157 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D TherJR_0162 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D TherJR_2158 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D TherJR_2159 UDP-N-acetylmuramate/alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D TherJR_2162 UDP-N-acetylmuramoylalanine/D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D TherJR_2165 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D TherJR_1176 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D TherJR_2164 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D TherJR_1759 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D TherJR_1362 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D TherJR_0929 Di-trans-poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D TherJR_1405 Bacitracin resistance protein BacA K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D TherJR_2163 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D TherJR_2160 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D TherJR_1863 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D TherJR_2936 penicillin-binding protein, 1A family K21464 pbpG; penicillin-binding protein 2D [EC:2.4.99.28 3.4.16.4]
D TherJR_2543 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D TherJR_1891 Peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D TherJR_2166 stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein)
D TherJR_1788 Peptidoglycan glycosyltransferase K05364 pbpA; penicillin-binding protein A
D TherJR_1659 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D TherJR_1391 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D TherJR_2200 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
C 00552 Teichoic acid biosynthesis [PATH:tjr00552]
D TherJR_1405 Bacitracin resistance protein BacA K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D TherJR_2821 Glycosyl transferase, family 4, conserved region K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D TherJR_1685 conserved hypothetical protein K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D TherJR_2827 glycosyl transferase, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
D TherJR_2828 cell envelope-related transcriptional attenuator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D TherJR_2876 cell envelope-related transcriptional attenuator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D TherJR_1332 Monogalactosyldiacylglycerol synthase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315]
D TherJR_0474 Monogalactosyldiacylglycerol synthase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315]
D TherJR_1412 sulfatase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
D TherJR_2850 sulfatase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:tjr00543]
D TherJR_2821 Glycosyl transferase, family 4, conserved region K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D TherJR_1685 conserved hypothetical protein K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D TherJR_0269 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:tjr00730]
D TherJR_0725 thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D TherJR_0724 phosphomethylpyrimidine kinase K14153 thiDE; hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase [EC:2.7.1.49 2.7.4.7 2.5.1.3]
D TherJR_1913 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D TherJR_3006 biotin and thiamin synthesis associated K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D TherJR_1699 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D TherJR_1442 thiazole biosynthesis enzyme K22699 thi4; sulfide-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.59]
D TherJR_0726 Hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D TherJR_1443 thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D TherJR_0727 thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D TherJR_1786 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D TherJR_0066 thiamine pyrophosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2]
D TherJR_1985 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:tjr00740]
D TherJR_1781 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D TherJR_1783 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D TherJR_1780 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D TherJR_1782 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D TherJR_1381 riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D TherJR_0726 Hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D TherJR_1336 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D TherJR_0050 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:tjr00750]
D TherJR_0012 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D TherJR_0934 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D TherJR_0010 pyridoxine biosynthesis protein K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D TherJR_0011 SNO glutamine amidotransferase K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:tjr00760]
D TherJR_0218 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D TherJR_0217 quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D TherJR_0219 nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D TherJR_1664 purine nucleoside phosphorylase I, inosine and guanosine-specific K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D TherJR_1929 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D TherJR_2515 nicotinate (nicotinamide) nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D TherJR_1153 NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D TherJR_1694 ATP-NAD/AcoX kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:tjr00770]
D TherJR_0360 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D TherJR_0361 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D TherJR_0362 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D TherJR_0359 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D TherJR_0214 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D TherJR_0215 pantoate/beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D TherJR_0225 transcriptional activator, Baf family K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D TherJR_1807 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D TherJR_2086 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D TherJR_0966 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D TherJR_0654 holo-acyl-carrier-protein synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D TherJR_0358 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D TherJR_2969 Branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D TherJR_0216 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:tjr00780]
D TherJR_2071 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D TherJR_2074 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D TherJR_2822 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D TherJR_0415 dithiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D TherJR_0016 biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D TherJR_3005 Radical SAM domain protein K01012 bioB; biotin synthase [EC:2.8.1.6]
D TherJR_0220 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism
C 00790 Folate biosynthesis [PATH:tjr00790]
D TherJR_1931 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D TherJR_0211 dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D TherJR_0212 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D TherJR_0210 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D TherJR_2555 FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D TherJR_1781 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D TherJR_2970 Anthranilate synthase K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D TherJR_0947 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D TherJR_0759 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D TherJR_0760 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D TherJR_0762 molybdenum cofactor synthesis domain protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D TherJR_2229 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D TherJR_0757 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D TherJR_0758 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
C 00670 One carbon pool by folate [PATH:tjr00670]
D TherJR_0208 Formate--tetrahydrofolate ligase K00288 MTHFD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase / formyltetrahydrofolate synthetase [EC:1.5.1.5 3.5.4.9 6.3.4.3]
D TherJR_1706 Methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D TherJR_1709 Methylenetetrahydrofolate dehydrogenase (NADP(+)) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D TherJR_2898 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D TherJR_0829 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D TherJR_0830 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D TherJR_1796 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D TherJR_0027 Methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D TherJR_0059 dihydropteroate synthase DHPS K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D TherJR_2947 Tetrahydromethanopterin S-methyltransferase K25221 mtgA; [methyl-Co(III) glycine betaine-specific corrinoid protein]---tetrahydrofolate methyltransferase [EC:2.1.1.378]
D TherJR_0272 thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D TherJR_2661 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D TherJR_1165 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D TherJR_0739 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:tjr00860]
D TherJR_1134 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D TherJR_1142 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D TherJR_1138 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D TherJR_1135 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D TherJR_1136 uroporphyrin-III C-methyltransferase K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75]
D TherJR_1133 siroheme synthase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76]
D TherJR_1140 putative transcriptional regulator, AsnC family K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111]
D TherJR_1141 putative transcriptional regulator, AsnC family K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111]
D TherJR_1137 Radical SAM domain protein K22226 ahbC; Fe-coproporphyrin III synthase
D TherJR_1139 Radical SAM domain protein K22227 ahbD; AdoMet-dependent heme synthase [EC:1.3.98.6]
D TherJR_1568 precorrin-2 C20-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151]
D TherJR_1565 precorrin-3B C17-methyltransferase K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272]
D TherJR_1567 precorrin-4 C11-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]
D TherJR_1566 cobalamin (vitamin B12) biosynthesis CbiG protein K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12]
D TherJR_1564 precorrin-6x reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106]
D TherJR_1266 precorrin-6x reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106]
D TherJR_1571 cobalamin biosynthesis protein CbiD K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195]
D TherJR_1569 precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit K02191 cbiT; cobalt-precorrin-6B (C15)-methyltransferase [EC:2.1.1.196]
D TherJR_1570 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit K03399 cbiE; cobalt-precorrin-7 (C5)-methyltransferase [EC:2.1.1.289]
D TherJR_1562 Precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60]
D TherJR_1309 cobyrinic acid a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D TherJR_1254 Magnesium chelatase K02230 cobN; cobaltochelatase CobN [EC:6.6.1.2]
D TherJR_1310 Cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D TherJR_1307 cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D TherJR_1308 cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D TherJR_1261 protein of unknown function DUF105 K08260 cbiZ; adenosylcobinamide hydrolase [EC:3.5.1.90]
D TherJR_1306 Adenosylcobinamide-phosphate guanylyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D TherJR_0528 cobalamin 5'-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D TherJR_0549 cobalamin 5'-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D TherJR_0551 thiamine biosynthesis protein ThiC K22465 bzaA_B; 5-hydroxybenzimidazole synthase [EC:4.1.99.23]
D TherJR_0550 thiamine biosynthesis protein ThiC K22465 bzaA_B; 5-hydroxybenzimidazole synthase [EC:4.1.99.23]
D TherJR_0547 Protein of unknown function DUF2284, metal-binding protein K25497 bzaC; 5-hydroxybenzimidazole methyltransferase [EC:2.1.1.-]
D TherJR_0546 Radical SAM domain protein K25498 bzaD; 5-methoxybenzimidazole methyltransferase
D TherJR_0545 Radical SAM domain protein K25499 bzaE; 5-methoxy-6-methylbenzimidazole methyltransferase
D TherJR_2065 nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D TherJR_0548 nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D TherJR_1311 GHMP kinase K16651 pduX; L-threonine kinase [EC:2.7.1.177]
D TherJR_1312 L-threonine-O-3-phosphate decarboxylase K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81]
D TherJR_0038 Cob(I)yrinic acid a,c-diamide adenosyltransferase K04032 eutT; ethanolamine utilization cobalamin adenosyltransferase [EC:2.5.1.154]
D TherJR_0222 von Willebrand factor type A K03404 chlD; magnesium chelatase subunit D [EC:6.6.1.1]
D TherJR_0223 Magnesium chelatase K03405 chlI; magnesium chelatase subunit I [EC:6.6.1.1]
D TherJR_1127 cobalamin B12-binding domain protein K04034 bchE; anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase [EC:1.21.98.3]
D TherJR_2216 Radical SAM domain protein K04034 bchE; anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase [EC:1.21.98.3]
D TherJR_2857 cobalamin B12-binding domain protein K04034 bchE; anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase [EC:1.21.98.3]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:tjr00130]
D TherJR_1773 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D TherJR_0050 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D TherJR_2068 ubiquinone/menaquinone biosynthesis methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D TherJR_1774 ubiquinone/menaquinone biosynthesis methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D TherJR_1771 protein of unknown function DUF178 K11782 mqnA; chorismate dehydratase [EC:4.2.1.151]
D TherJR_1772 Radical SAM domain protein K18285 mqnE; aminodeoxyfutalosine synthase [EC:2.5.1.120]
D TherJR_0139 futalosine nucleosidase K11783 mqnB; futalosine hydrolase [EC:3.2.2.26]
D TherJR_1770 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit K11784 mqnC; cyclic dehypoxanthinyl futalosine synthase [EC:1.21.98.1]
D TherJR_0140 protein of unknown function DUF191 K11785 mqnD; 5,8-dihydroxy-2-naphthoate synthase [EC:4.1.99.29]
D TherJR_1268 NAD(P)H dehydrogenase (quinone) K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:tjr00900]
D TherJR_1699 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D TherJR_1365 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D TherJR_0253 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D TherJR_0127 4-diphosphocytidyl-2C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D TherJR_0254 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D TherJR_1367 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D TherJR_1590 hydroxymethylbutenyl pyrophosphate reductase K02945 RP-S1; small subunit ribosomal protein S1
D TherJR_0050 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D TherJR_1701 Polyprenyl synthetase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D TherJR_1116 Trans-hexaprenyltranstransferase K24873 hepT; heptaprenyl diphosphate synthase component 2 [EC:2.5.1.30]
D TherJR_1362 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D TherJR_0929 Di-trans-poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D TherJR_2764 Transketolase central region K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D TherJR_2765 Transketolase domain protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:tjr00523]
D TherJR_0494 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D TherJR_0906 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D TherJR_0906 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D TherJR_0081 peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase K19200 IAL; isopenicillin-N N-acyltransferase like protein
C 00332 Carbapenem biosynthesis [PATH:tjr00332]
D TherJR_2518 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D TherJR_2517 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:tjr00261]
D TherJR_2247 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D TherJR_1400 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D TherJR_0357 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D TherJR_1399 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D TherJR_1401 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D TherJR_1396 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:tjr00521]
D TherJR_2721 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D TherJR_0494 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D TherJR_0906 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D TherJR_2721 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:tjr00525]
D TherJR_0494 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D TherJR_0906 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:tjr00401]
D TherJR_1598 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D TherJR_2387 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D TherJR_0837 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D TherJR_1607 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D TherJR_1606 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D TherJR_2075 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D TherJR_2074 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D TherJR_2073 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:tjr00999]
D TherJR_1806 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D TherJR_1756 shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation
D TherJR_2411 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
C 00627 Aminobenzoate degradation [PATH:tjr00627]
D TherJR_1099 Acetamidase/Formamidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D TherJR_2498 UbiD family decarboxylase K16239 bsdC; 4-hydroxybenzoate decarboxylase subunit C [EC:4.1.1.61]
D TherJR_0050 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:tjr00625]
D TherJR_0855 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D TherJR_1111 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D TherJR_0692 nitrogenase molybdenum-iron protein beta chain K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]
D TherJR_0688 nitrogenase iron protein K02588 nifH; nitrogenase iron protein NifH
D TherJR_0691 nitrogenase molybdenum-iron protein alpha chain K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation [PATH:tjr00633]
D TherJR_0344 nickel-dependent hydrogenase large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D TherJR_2990 nickel-dependent hydrogenase large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D TherJR_2991 hydrogenase (NiFe) small subunit HydA K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D TherJR_0764 hydrogenase (NiFe) small subunit HydA K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D TherJR_0343 hydrogenase (NiFe) small subunit HydA K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D TherJR_0257 hydrogenase (NiFe) small subunit HydA K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D TherJR_2989 NADH ubiquinone oxidoreductase 20 kDa subunit K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D TherJR_2144 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D TherJR_2959 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D TherJR_1937 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D TherJR_1157 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D TherJR_1938 4Fe-4S ferredoxin iron-sulfur binding domain protein K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D TherJR_2960 4Fe-4S ferredoxin iron-sulfur binding domain protein K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D TherJR_0713 4Fe-4S ferredoxin iron-sulfur binding domain protein K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D TherJR_2508 4Fe-4S ferredoxin iron-sulfur binding domain protein K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation [PATH:tjr00643]
D TherJR_1099 Acetamidase/Formamidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00791 Atrazine degradation
D TherJR_0607 urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D TherJR_0606 urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D TherJR_0605 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:tjr00626]
D TherJR_0855 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D TherJR_1111 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:tjr03020]
D TherJR_0288 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D TherJR_0289 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D TherJR_0324 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D TherJR_1808 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D TherJR_2923 DNA-directed RNA polymerase delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:tjr03010]
D TherJR_1590 hydroxymethylbutenyl pyrophosphate reductase K02945 RP-S1; small subunit ribosomal protein S1
D TherJR_1356 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D TherJR_0302 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D TherJR_0323 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D TherJR_0313 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D TherJR_2979 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D TherJR_0292 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D TherJR_0310 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D TherJR_0332 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D TherJR_0295 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D TherJR_0322 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D TherJR_0291 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D TherJR_0321 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D TherJR_0309 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D TherJR_1384 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D TherJR_2050 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D TherJR_0305 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D TherJR_2977 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D TherJR_0300 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D TherJR_2461 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D TherJR_2444 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D TherJR_0284 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D TherJR_0299 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D TherJR_0296 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D TherJR_0297 ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4
D TherJR_0308 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D TherJR_0311 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D TherJR_0286 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D TherJR_2974 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D TherJR_0285 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D TherJR_0283 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D TherJR_0331 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D TherJR_0306 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D TherJR_0315 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D TherJR_0303 ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D TherJR_0325 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D TherJR_0312 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D TherJR_2043 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D TherJR_1875 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D TherJR_2531 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D TherJR_0301 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D TherJR_0298 Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23
D TherJR_0307 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D TherJR_0175 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25
D TherJR_2529 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D TherJR_2104 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D TherJR_0304 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D TherJR_0314 ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D TherJR_2907 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D TherJR_2080 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D TherJR_0280 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D TherJR_3017 ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D TherJR_1876 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D TherJR_0320 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D TherJR_0290 ribosomal protein L7Ae/L30e/S12e/Gadd45 K07590 RP-L7A; large subunit ribosomal protein L7A
D TherJR_R0009 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D TherJR_R0014 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D TherJR_R0048 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D TherJR_R0012 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D TherJR_R0017 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D TherJR_R0047 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D TherJR_R0013 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D TherJR_R0046 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D TherJR_R0018 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:tjr00970]
D TherJR_R0062 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D TherJR_R0011 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D TherJR_R0016 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D TherJR_R0059 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D TherJR_R0004 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D TherJR_R0003 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D TherJR_R0044 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D TherJR_R0053 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D TherJR_R0019 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D TherJR_R0031 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D TherJR_R0040 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D TherJR_R0035 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D TherJR_R0057 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D TherJR_R0038 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D TherJR_R0065 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D TherJR_R0051 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D TherJR_R0054 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D TherJR_R0033 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D TherJR_R0060 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D TherJR_R0064 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D TherJR_R0058 tRNA-His K14226 tRNA-His; tRNA His
D TherJR_R0010 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D TherJR_R0015 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D TherJR_R0034 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D TherJR_R0055 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D TherJR_R0028 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D TherJR_R0037 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D TherJR_R0026 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D TherJR_R0066 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D TherJR_R0056 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D TherJR_R0027 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D TherJR_R0024 tRNA-Met K14230 tRNA-Met; tRNA Met
D TherJR_R0022 tRNA-Met K14230 tRNA-Met; tRNA Met
D TherJR_R0052 tRNA-Met K14230 tRNA-Met; tRNA Met
D TherJR_R0032 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D TherJR_R0061 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D TherJR_R0045 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D TherJR_R0029 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D TherJR_R0005 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D TherJR_R0001 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D TherJR_R0002 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D TherJR_R0007 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D TherJR_R0023 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D TherJR_R0020 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D TherJR_R0025 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D TherJR_R0041 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D TherJR_R0039 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D TherJR_R0021 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D TherJR_R0030 tRNA-Val K14237 tRNA-Val; tRNA Val
D TherJR_R0050 tRNA-Val K14237 tRNA-Val; tRNA Val
D TherJR_R0042 tRNA-Val K14237 tRNA-Val; tRNA Val
D TherJR_R0036 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D TherJR_R0067 tRNA-Pyl K14239 tRNA-Pyl; tRNA Pyl
D TherJR_0268 glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D TherJR_0871 glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D TherJR_0872 glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D TherJR_0870 glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D TherJR_1904 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D TherJR_1923 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D TherJR_2404 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D TherJR_2403 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D TherJR_1878 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D TherJR_0014 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D TherJR_0752 L-seryl-tRNA selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D TherJR_0270 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D TherJR_0094 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D TherJR_1796 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D TherJR_2557 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D TherJR_2509 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D TherJR_1858 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D TherJR_0230 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D TherJR_2924 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D TherJR_1368 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D TherJR_1924 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D TherJR_1871 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D TherJR_1870 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D TherJR_1862 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D TherJR_1638 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:tjr03060]
D TherJR_0316 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D TherJR_0281 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D TherJR_2697 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D TherJR_1203 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D TherJR_1204 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D TherJR_1201 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D TherJR_3014 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D TherJR_2771 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D TherJR_2051 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D TherJR_R0008 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA
D TherJR_2061 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D TherJR_1769 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D TherJR_1816 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D TherJR_0236 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D TherJR_1115 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D TherJR_1768 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC
D TherJR_2042 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D TherJR_1838 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:tjr04122]
D TherJR_1913 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D TherJR_0452 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D TherJR_2395 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D TherJR_1911 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D TherJR_0759 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D TherJR_2138 thiamineS protein K03636 moaD; sulfur-carrier protein
D TherJR_2242 UBA/THIF-type NAD/FAD binding protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D TherJR_2209 Rhodanese domain protein K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D TherJR_0760 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D TherJR_0762 molybdenum cofactor synthesis domain protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D TherJR_2244 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein
D TherJR_2271 Mov34/MPN/PAD-1 family protein K21140 mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6]
C 03050 Proteasome
C 03018 RNA degradation [PATH:tjr03018]
D TherJR_2707 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D TherJR_1385 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D TherJR_2693 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D TherJR_1439 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D TherJR_2912 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D TherJR_1279 metal dependent phosphohydrolase K18682 rny; ribonucrease Y [EC:3.1.-.-]
D TherJR_1402 RNA-metabolising metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-]
D TherJR_2326 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D TherJR_2450 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D TherJR_0925 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D TherJR_0775 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D TherJR_1495 RNA chaperone Hfq K03666 hfq; host factor-I protein
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:tjr03030]
D TherJR_2331 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D TherJR_1371 DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D TherJR_0068 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D TherJR_0087 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D TherJR_2462 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D TherJR_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D TherJR_2972 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D TherJR_2303 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D TherJR_2978 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D TherJR_1738 Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D TherJR_2295 Cupin 2 conserved barrel domain protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D TherJR_2040 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D TherJR_0963 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TherJR_0850 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:tjr03410]
D TherJR_2368 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D TherJR_0964 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D TherJR_2735 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D TherJR_1386 apurinic endonuclease Apn1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D TherJR_0963 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TherJR_1205 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D TherJR_0850 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:tjr03420]
D TherJR_0178 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D TherJR_2732 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D TherJR_2733 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D TherJR_2731 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D TherJR_0848 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TherJR_0963 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TherJR_0850 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:tjr03430]
D TherJR_1489 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D TherJR_1865 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2
D TherJR_1492 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D TherJR_0848 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TherJR_1703 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D TherJR_1702 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D TherJR_1205 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D TherJR_2978 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D TherJR_2331 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D TherJR_1371 DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D TherJR_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D TherJR_0068 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D TherJR_2462 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D TherJR_0087 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D TherJR_0850 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:tjr03440]
D TherJR_1205 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D TherJR_2978 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D TherJR_0004 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D TherJR_2406 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D TherJR_0070 recombination protein RecR K06187 recR; recombination protein RecR
D TherJR_1277 recA protein K03553 recA; recombination protein RecA
D TherJR_0963 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TherJR_1181 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D TherJR_1182 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D TherJR_1180 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D TherJR_2099 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D TherJR_1081 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D TherJR_0537 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D TherJR_2331 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D TherJR_1371 DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D TherJR_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D TherJR_0068 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D TherJR_2462 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D TherJR_0087 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D TherJR_1798 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining [PATH:tjr03450]
D TherJR_1555 Ku protein K10979 ku; DNA end-binding protein Ku
D TherJR_1554 ATP dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D TherJR_1553 DNA polymerase LigD, polymerase domain protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:tjr02010]
D TherJR_0792 ABC-type tungstate transport system, permease component K05772 tupA; tungstate transport system substrate-binding protein
D TherJR_0793 binding-protein-dependent transport systems inner membrane component K05773 tupB; tungstate transport system permease protein
D TherJR_0794 ABC transporter related protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D TherJR_0502 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D TherJR_1474 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D TherJR_2253 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D TherJR_2470 NMT1/THI5 like domain protein K15553 ssuA; sulfonate transport system substrate-binding protein
D TherJR_1290 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D TherJR_0503 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D TherJR_2251 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D TherJR_2469 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D TherJR_1473 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D TherJR_1472 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D TherJR_2252 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D TherJR_0504 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D TherJR_2468 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D TherJR_0698 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D TherJR_2233 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D TherJR_0699 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein
D TherJR_2232 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein
D TherJR_0700 ABC transporter related protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D TherJR_2231 ABC transporter related protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D TherJR_2257 ABC transporter related protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D TherJR_0880 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D TherJR_1407 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D TherJR_0878 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein
D TherJR_0877 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein
D TherJR_0879 ABC transporter related protein K23537 nupA; general nucleoside transport system ATP-binding protein
D TherJR_2313 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D TherJR_2312 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein
D TherJR_2311 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein
D TherJR_2127 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D TherJR_2585 phosphonate ABC transporter, periplasmic phosphonate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D TherJR_2587 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein
D TherJR_2586 ABC transporter related protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D TherJR_1192 polar amino acid ABC transporter, inner membrane subunit K10037 glnP; glutamine transport system permease protein
D TherJR_1193 ABC transporter related protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D TherJR_2669 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D TherJR_2668 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D TherJR_2667 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D TherJR_2666 ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D TherJR_2854 ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D TherJR_2665 ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D TherJR_2267 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D TherJR_2268 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein
D TherJR_2269 ABC transporter related protein K02071 metN; D-methionine transport system ATP-binding protein
D TherJR_1263 cobalt transport protein K02009 cbiN; cobalt/nickel transport protein
D TherJR_1226 conserved hypothetical protein K02009 cbiN; cobalt/nickel transport protein
D TherJR_1225 cobalamin (vitamin B12) biosynthesis CbiM protein K02007 cbiM; cobalt/nickel transport system permease protein
D TherJR_1262 cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D TherJR_2309 cobalt ABC transporter, inner membrane subunit CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D TherJR_1264 cobalt ABC transporter, inner membrane subunit CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D TherJR_2308 cobalt ABC transporter, ATPase subunit K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D TherJR_1265 cobalt ABC transporter, ATPase subunit K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D TherJR_0221 BioY protein K03523 bioY; biotin transport system substrate-specific component
D TherJR_0329 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein
D TherJR_1258 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein
D TherJR_0327 cobalt ABC transporter, ATPase subunit K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D TherJR_0328 ABC transporter related protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D TherJR_1445 ABC-2 type transporter K09694 nodJ; lipooligosaccharide transport system permease protein
D TherJR_1446 ABC transporter related protein K09695 nodI; lipooligosaccharide transport system ATP-binding protein
D TherJR_2276 cytochrome c assembly protein K02195 ccmC; heme exporter protein C
D TherJR_2277 cytochrome c-type biogenesis protein CcmB K02194 ccmB; heme exporter protein B
D TherJR_2278 heme exporter protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D TherJR_2740 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein
D TherJR_2741 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D TherJR_0019 hypothetical protein K16919 ytrC_D; acetoin utilization transport system permease protein
D TherJR_0018 ABC transporter related protein K16921 ytrB; acetoin utilization transport system ATP-binding protein
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:tjr03070]
D TherJR_1751 type II secretion system protein G K02456 gspG; general secretion pathway protein G
D TherJR_1203 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D TherJR_1204 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D TherJR_0281 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D TherJR_2697 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D TherJR_0316 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D TherJR_1201 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D TherJR_3014 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D TherJR_2771 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D TherJR_2061 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D TherJR_2051 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D TherJR_1769 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D TherJR_1816 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D TherJR_0236 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D TherJR_1115 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D TherJR_1768 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:tjr02020]
D TherJR_2128 multi-sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D TherJR_2315 two component transcriptional regulator, winged helix family K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D TherJR_2129 two component transcriptional regulator, winged helix family K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D TherJR_2313 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D TherJR_0173 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D TherJR_0646 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D TherJR_2793 flagellin domain protein K02406 fliC; flagellin
D TherJR_1512 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily K02405 fliA; RNA polymerase sigma factor FliA
D TherJR_2770 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D TherJR_2641 two component transcriptional regulator, winged helix family K07775 resD; two-component system, OmpR family, response regulator ResD
D TherJR_1220 two component transcriptional regulator, winged helix family K07775 resD; two-component system, OmpR family, response regulator ResD
D TherJR_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D TherJR_1084 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D TherJR_2640 integral membrane sensor signal transduction histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D TherJR_2683 integral membrane sensor signal transduction histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3]
D TherJR_2684 two component transcriptional regulator, winged helix family K18941 arlR; two-component system, OmpR family, response regulator ArlR
D TherJR_2919 response regulator receiver protein K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F
D TherJR_0723 response regulator receiver protein K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F
D TherJR_1689 sporulation transcriptional activator Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A
D TherJR_0798 response regulator receiver and unknown domain protein K11692 K11692; two-component system, CitB family, response regulator DctR
D TherJR_1506 Malate dehydrogenase (oxaloacetate-decarboxylating) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D TherJR_2656 Accessory gene regulator B K07813 agrB; accessory gene regulator B
D TherJR_2761 Accessory gene regulator B K07813 agrB; accessory gene regulator B
D TherJR_1195 integral membrane sensor signal transduction histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D TherJR_2794 carbon storage regulator, CsrA K03563 csrA; carbon storage regulator
D TherJR_2818 Histidine kinase K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3]
D TherJR_2817 two component transcriptional regulator, LuxR family K07692 degU; two-component system, NarL family, response regulator DegU
D TherJR_2815 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA
D TherJR_1217 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA
D TherJR_2811 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB
D TherJR_2810 response regulator receiver protein K02282 cpaE; pilus assembly protein CpaE
D TherJR_0382 conserved hypothetical protein K02282 cpaE; pilus assembly protein CpaE
D TherJR_2440 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D TherJR_2809 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D TherJR_0383 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D TherJR_0813 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D TherJR_2439 Type II secretion system F domain protein K12510 tadB; tight adherence protein B
D TherJR_2808 Type II secretion system F domain protein K12510 tadB; tight adherence protein B
D TherJR_0384 Type II secretion system F domain protein K12510 tadB; tight adherence protein B
D TherJR_2438 Type II secretion system F domain protein K12511 tadC; tight adherence protein C
D TherJR_2807 Type II secretion system F domain protein K12511 tadC; tight adherence protein C
D TherJR_0385 Type II secretion system F domain protein K12511 tadC; tight adherence protein C
D TherJR_0703 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D TherJR_0706 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D TherJR_0707 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D TherJR_0709 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D TherJR_0710 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D TherJR_0797 integral membrane sensor signal transduction histidine kinase K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D TherJR_1947 signal transduction histidine kinase, nitrogen specific, NtrB K07710 atoS; two-component system, NtrC family, sensor histidine kinase AtoS [EC:2.7.13.3]
D TherJR_2713 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor
D TherJR_2991 hydrogenase (NiFe) small subunit HydA K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D TherJR_0764 hydrogenase (NiFe) small subunit HydA K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D TherJR_0343 hydrogenase (NiFe) small subunit HydA K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D TherJR_0257 hydrogenase (NiFe) small subunit HydA K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D TherJR_2989 NADH ubiquinone oxidoreductase 20 kDa subunit K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D TherJR_0344 nickel-dependent hydrogenase large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D TherJR_2990 nickel-dependent hydrogenase large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D TherJR_2988 Ni/Fe-hydrogenase, b-type cytochrome subunit K03620 hyaC; Ni/Fe-hydrogenase 1 B-type cytochrome subunit
D TherJR_0259 Ni/Fe-hydrogenase, b-type cytochrome subunit K03620 hyaC; Ni/Fe-hydrogenase 1 B-type cytochrome subunit
D TherJR_0345 (Ni/Fe) hydrogenase, b-type cytochrome subunit K03620 hyaC; Ni/Fe-hydrogenase 1 B-type cytochrome subunit
D TherJR_1144 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D TherJR_0123 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D TherJR_0184 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D TherJR_0843 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D TherJR_1595 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D TherJR_2197 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D TherJR_2630 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D TherJR_0653 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D TherJR_1516 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D TherJR_0110 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D TherJR_1596 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D TherJR_1517 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D TherJR_0111 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D TherJR_1528 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D TherJR_0112 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D TherJR_1518 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D TherJR_0113 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D TherJR_0636 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D TherJR_2343 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D TherJR_1970 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D TherJR_0051 transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D TherJR_0615 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D TherJR_0852 cytochrome bd ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D TherJR_0853 cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D TherJR_2896 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D TherJR_2090 nucleotide sugar dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:tjr02024]
D TherJR_1495 RNA chaperone Hfq K03666 hfq; host factor-I protein
D TherJR_1607 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D TherJR_1606 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D TherJR_2669 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D TherJR_2668 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D TherJR_2667 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D TherJR_2666 ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D TherJR_2854 ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D TherJR_2665 ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D TherJR_2859 Ig domain protein group 2 domain protein K20276 bapA; large repetitive protein
D TherJR_2695 o-succinylbenzoate--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D TherJR_2696 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D TherJR_0636 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D TherJR_2343 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D TherJR_1970 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D TherJR_1783 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D TherJR_0517 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D TherJR_2656 Accessory gene regulator B K07813 agrB; accessory gene regulator B
D TherJR_2761 Accessory gene regulator B K07813 agrB; accessory gene regulator B
D TherJR_1230 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TherJR_1239 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TherJR_1095 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TherJR_0801 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TherJR_1229 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TherJR_0968 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TherJR_1231 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TherJR_1240 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TherJR_1096 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TherJR_0802 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TherJR_0969 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TherJR_1241 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TherJR_1232 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TherJR_1097 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TherJR_0970 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TherJR_0803 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TherJR_1093 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TherJR_1242 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TherJR_0971 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TherJR_0799 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TherJR_0800 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein
D TherJR_1094 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein
D TherJR_3014 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D TherJR_0281 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D TherJR_2697 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D TherJR_0316 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D TherJR_1201 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D TherJR_2771 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D TherJR_2061 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D TherJR_2051 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D TherJR_2817 two component transcriptional regulator, LuxR family K07692 degU; two-component system, NarL family, response regulator DegU
D TherJR_2919 response regulator receiver protein K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F
D TherJR_0723 response regulator receiver protein K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F
D TherJR_1689 sporulation transcriptional activator Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:tjr02030]
D TherJR_0123 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D TherJR_0184 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D TherJR_0843 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D TherJR_1595 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D TherJR_2197 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D TherJR_2630 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D TherJR_1517 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D TherJR_0111 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D TherJR_0653 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D TherJR_1516 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D TherJR_0110 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D TherJR_1596 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D TherJR_1528 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D TherJR_0112 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D TherJR_1515 CheC, inhibitor of MCP methylation K03410 cheC; chemotaxis protein CheC
D TherJR_0114 CheC domain protein K03409 cheX; chemotaxis protein CheX
D TherJR_0115 chemotaxis protein K03409 cheX; chemotaxis protein CheX
D TherJR_0224 chemotaxis protein K03409 cheX; chemotaxis protein CheX
D TherJR_1518 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D TherJR_0113 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D TherJR_1514 CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D TherJR_1144 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D TherJR_1541 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D TherJR_1530 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D TherJR_1529 CheC, inhibitor of MCP methylation / FliN fusion protein K02417 fliN; flagellar motor switch protein FliN
D TherJR_2770 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D TherJR_2769 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:tjr02040]
D TherJR_1543 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D TherJR_1542 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D TherJR_1541 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D TherJR_1540 Flagellar assembly protein FliH/Type III secretion system HrpE K02411 fliH; flagellar assembly protein FliH
D TherJR_1539 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D TherJR_1538 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D TherJR_1536 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D TherJR_1531 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D TherJR_1530 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D TherJR_1529 CheC, inhibitor of MCP methylation / FliN fusion protein K02417 fliN; flagellar motor switch protein FliN
D TherJR_1527 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D TherJR_1526 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D TherJR_1525 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D TherJR_1524 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D TherJR_1522 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D TherJR_1523 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D TherJR_1545 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D TherJR_1544 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D TherJR_1535 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D TherJR_1533 fagellar hook-basal body protein K02390 flgE; flagellar hook protein FlgE
D TherJR_2882 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D TherJR_2881 fagellar hook-basal body protein K02392 flgG; flagellar basal-body rod protein FlgG
D TherJR_2880 Flagellar protein FlgJ-like protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D TherJR_2798 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D TherJR_2797 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D TherJR_2793 flagellin domain protein K02406 fliC; flagellin
D TherJR_2791 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2
D TherJR_2779 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D TherJR_2770 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D TherJR_2769 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D TherJR_2302 RNA polymerase, sigma 70 subunit, RpoD subfamily K03086 rpoD; RNA polymerase primary sigma factor
D TherJR_2713 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor
D TherJR_1512 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D TherJR_2707 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
D TherJR_0027 Methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D TherJR_0059 dihydropteroate synthase DHPS K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:tjr01501]
D TherJR_1801 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D TherJR_1863 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D TherJR_2543 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D TherJR_1891 Peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:tjr01502]
D TherJR_2640 integral membrane sensor signal transduction histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D TherJR_1176 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D TherJR_0657 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D TherJR_2164 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D TherJR_1759 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D TherJR_2163 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D TherJR_2160 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:tjr01503]
D TherJR_0335 N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D TherJR_2572 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D TherJR_1039 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D TherJR_2205 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D TherJR_1576 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D TherJR_0173 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D TherJR_0646 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D TherJR_1801 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:tjr01000]
C 01001 Protein kinases [BR:tjr01001]
D TherJR_1787 serine/threonine protein kinase with PASTA sensor(s) K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D TherJR_1977 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D TherJR_2128 multi-sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D TherJR_2640 integral membrane sensor signal transduction histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D TherJR_2683 integral membrane sensor signal transduction histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3]
D TherJR_1195 integral membrane sensor signal transduction histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D TherJR_2818 Histidine kinase K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3]
D TherJR_0797 integral membrane sensor signal transduction histidine kinase K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D TherJR_1947 signal transduction histidine kinase, nitrogen specific, NtrB K07710 atoS; two-component system, NtrC family, sensor histidine kinase AtoS [EC:2.7.13.3]
D TherJR_1517 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D TherJR_0111 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:tjr01009]
D TherJR_2058 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D TherJR_2326 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D TherJR_1790 protein serine/threonine phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D TherJR_2431 protein serine/threonine phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
C 01002 Peptidases and inhibitors [BR:tjr01002]
D TherJR_1838 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D TherJR_1750 peptidase A24A domain protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D TherJR_2433 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D TherJR_2814 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D TherJR_2093 spore protease K06012 gpr; spore protease [EC:3.4.24.78]
D TherJR_0766 hydrogenase maturation protease K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D TherJR_0260 hydrogenase maturation protease K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D TherJR_2150 peptidase U4 sporulation factor SpoIIGA K06383 spoIIGA; stage II sporulation protein GA (sporulation sigma-E factor processing peptidase) [EC:3.4.23.-]
D TherJR_0787 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D TherJR_0718 peptidase C26 K07010 K07010; putative glutamine amidotransferase
D TherJR_1388 Peptidoglycan-binding lysin domain protein K19220 cwlS; peptidoglycan DL-endopeptidase CwlS [EC:3.4.-.-]
D TherJR_0827 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D TherJR_0380 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D TherJR_0665 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D TherJR_0081 peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase K19200 IAL; isopenicillin-N N-acyltransferase like protein
D TherJR_2656 Accessory gene regulator B K07813 agrB; accessory gene regulator B
D TherJR_2761 Accessory gene regulator B K07813 agrB; accessory gene regulator B
D TherJR_0887 Abortive infection protein K07052 K07052; CAAX protease family protein
D TherJR_1736 Abortive infection protein K07052 K07052; CAAX protease family protein
D TherJR_0541 Abortive infection protein K07052 K07052; CAAX protease family protein
D TherJR_1283 Membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D TherJR_1673 peptidase T-like protein K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D TherJR_0317 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D TherJR_1732 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D TherJR_1351 isoaspartyl dipeptidase K01305 iadA; beta-aspartyl-dipeptidase (metallo-type) [EC:3.4.19.-]
D TherJR_0205 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D TherJR_1436 Vesicle-fusing ATPase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D TherJR_0554 peptidase M48 Ste24p K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D TherJR_2537 peptidase M50 K06402 spoIVFB; stage IV sporulation protein FB [EC:3.4.24.-]
D TherJR_1366 membrane-associated zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D TherJR_0173 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D TherJR_0646 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D TherJR_0569 peptidase S8 and S53 subtilisin kexin sedolisin K17734 aprX; serine protease AprX [EC:3.4.21.-]
D TherJR_0857 peptidase S8 and S53 subtilisin kexin sedolisin K17734 aprX; serine protease AprX [EC:3.4.21.-]
D TherJR_2752 peptidase S8 and S53 subtilisin kexin sedolisin K17734 aprX; serine protease AprX [EC:3.4.21.-]
D TherJR_2829 peptidase S8 and S53 subtilisin kexin sedolisin K01280 TPP2; tripeptidyl-peptidase II [EC:3.4.14.10]
D TherJR_1659 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D TherJR_1391 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D TherJR_2200 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D TherJR_2563 ATP-dependent Clp protease, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D TherJR_2973 Sigma 54 interacting domain protein K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D TherJR_2560 ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D TherJR_2561 Sigma 54 interacting domain protein K04076 lonB; ATP-dependent Lon protease [EC:3.4.21.53]
D TherJR_1501 transcriptional repressor, LexA family K01356 lexA; repressor LexA [EC:3.4.21.88]
D TherJR_2042 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D TherJR_0020 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D TherJR_2738 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D TherJR_2921 signal peptide peptidase SppA, 36K type K04773 sppA; protease IV [EC:3.4.21.-]
D TherJR_0125 cyanophycinase K13282 cphB; cyanophycinase [EC:3.4.15.6]
D TherJR_1011 Rhomboid family protein K07059 K07059; rhomboid family protein
D TherJR_1690 stage IV sporulation protein B K06399 spoIVB; stage IV sporulation protein B [EC:3.4.21.116]
D TherJR_1548 20S proteasome A and B subunits K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D TherJR_1866 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D TherJR_1894 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D TherJR_1734 peptidase U62 modulator of DNA gyrase K03592 pmbA; PmbA protein
D TherJR_1739 peptidase U62 modulator of DNA gyrase K03568 tldD; TldD protein
C 01003 Glycosyltransferases [BR:tjr01003]
D TherJR_1411 Dolichyl-phosphate beta-D-mannosyltransferase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D TherJR_1332 Monogalactosyldiacylglycerol synthase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315]
D TherJR_0474 Monogalactosyldiacylglycerol synthase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315]
D TherJR_2362 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21]
D TherJR_2367 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21]
D TherJR_1863 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D TherJR_2936 penicillin-binding protein, 1A family K21464 pbpG; penicillin-binding protein 2D [EC:2.4.99.28 3.4.16.4]
D TherJR_2827 glycosyl transferase, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
D TherJR_2821 Glycosyl transferase, family 4, conserved region K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D TherJR_1685 conserved hypothetical protein K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D TherJR_0820 conserved hypothetical protein K13687 aftB; arabinofuranosyltransferase [EC:2.4.2.-]
D TherJR_0422 glycosyltransferase 36 K13688 chvB; cyclic beta-1,2-glucan glucanotransferase [EC:2.4.1.397]
D TherJR_2674 Alpha,alpha-trehalose-phosphate synthase (UDP-forming) K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:tjr01005]
D TherJR_2821 Glycosyl transferase, family 4, conserved region K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D TherJR_1685 conserved hypothetical protein K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:tjr01011]
D TherJR_2157 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D TherJR_0162 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D TherJR_2158 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D TherJR_2159 UDP-N-acetylmuramate/alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D TherJR_2162 UDP-N-acetylmuramoylalanine/D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D TherJR_2165 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D TherJR_1176 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D TherJR_0657 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D TherJR_1113 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D TherJR_2163 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D TherJR_2160 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D TherJR_1405 Bacitracin resistance protein BacA K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D TherJR_2823 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D TherJR_2457 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D TherJR_0482 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D TherJR_1863 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D TherJR_2936 penicillin-binding protein, 1A family K21464 pbpG; penicillin-binding protein 2D [EC:2.4.99.28 3.4.16.4]
D TherJR_2543 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D TherJR_1891 Peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D TherJR_2166 stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein)
D TherJR_1788 Peptidoglycan glycosyltransferase K05364 pbpA; penicillin-binding protein A
D TherJR_1659 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D TherJR_1391 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D TherJR_2200 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D TherJR_1388 Peptidoglycan-binding lysin domain protein K19220 cwlS; peptidoglycan DL-endopeptidase CwlS [EC:3.4.-.-]
D TherJR_0967 Lytic transglycosylase catalytic K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D TherJR_1896 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D TherJR_2938 spore cortex-lytic enzyme K27245 sleB; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D TherJR_2137 cell wall hydrolase SleB K27245 sleB; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D TherJR_1559 cell wall hydrolase SleB K27245 sleB; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D TherJR_1187 SpoIID/LytB domain protein K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29]
D TherJR_2885 stage II sporulation protein D K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29]
D TherJR_0186 SpoIID/LytB domain protein K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29]
D TherJR_0335 N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D TherJR_2572 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D TherJR_1039 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D TherJR_2205 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D TherJR_1576 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:tjr01004]
D TherJR_2075 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D TherJR_2077 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D TherJR_2071 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D TherJR_2074 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D TherJR_2822 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D TherJR_2076 enoyl-(acyl-carrier-protein) reductase II K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
D TherJR_0368 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_0370 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_0371 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_1681 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_2691 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_1917 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TherJR_2695 o-succinylbenzoate--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D TherJR_2696 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D TherJR_2510 AMP-dependent synthetase and ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D TherJR_2078 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D TherJR_1581 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D TherJR_1591 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:tjr01006]
D TherJR_1701 Polyprenyl synthetase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D TherJR_1116 Trans-hexaprenyltranstransferase K24873 hepT; heptaprenyl diphosphate synthase component 2 [EC:2.5.1.30]
D TherJR_1362 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D TherJR_0929 Di-trans-poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D TherJR_1494 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D TherJR_1773 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
C 01007 Amino acid related enzymes [BR:tjr01007]
D TherJR_0268 glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D TherJR_1862 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D TherJR_1638 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D TherJR_0270 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D TherJR_2924 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D TherJR_0094 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D TherJR_1858 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D TherJR_2557 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D TherJR_2509 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D TherJR_0230 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D TherJR_1923 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D TherJR_1924 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D TherJR_2404 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D TherJR_2403 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D TherJR_0014 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D TherJR_1368 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D TherJR_1878 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D TherJR_1904 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D TherJR_1871 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D TherJR_1870 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D TherJR_2387 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D TherJR_1813 LL-diaminopimelate aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D TherJR_1284 aminotransferase class I and II K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D TherJR_2930 aminotransferase class I and II K10907 K10907; aminotransferase [EC:2.6.1.-]
D TherJR_0837 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D TherJR_0351 acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D TherJR_1142 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D TherJR_0358 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D TherJR_2969 Branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D TherJR_0012 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D TherJR_0495 TDP-4-keto-6-deoxy-D-glucose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:tjr00194]
D TherJR_2886 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D TherJR_2887 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D TherJR_2888 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D TherJR_2889 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D TherJR_2890 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D TherJR_2891 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D TherJR_2892 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D TherJR_2893 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D TherJR_2895 hypothetical protein K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:tjr03000]
D TherJR_0511 transcriptional regulator, LysR family K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D TherJR_0943 transcriptional regulator, LysR family K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D TherJR_2884 sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D TherJR_2402 putative signal transduction protein with CBS domains K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
D TherJR_2622 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D TherJR_2571 transcriptional regulator, GntR family K07978 plmA; GntR family transcriptional regulator
D TherJR_0017 transcriptional regulator, GntR family K07979 ytrA; GntR family transcriptional regulator
D TherJR_2701 transcriptional regulator, GntR family K07979 ytrA; GntR family transcriptional regulator
D TherJR_0542 transcriptional regulator, TetR family K22106 fatR; TetR/AcrR family transcriptional regulator, repressor of fatR-cypB operon
D TherJR_0261 transcriptional regulator, TetR family K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D TherJR_0918 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D TherJR_0277 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D TherJR_0553 transcriptional regulator, MerR family K11923 cueR; MerR family transcriptional regulator, copper efflux regulator
D TherJR_2677 transcriptional regulator, MerR family K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D TherJR_2212 transcriptional regulator, MerR family K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D TherJR_1326 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D TherJR_1919 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D TherJR_2338 ferric uptake regulator, Fur family K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D TherJR_0636 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D TherJR_2343 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D TherJR_1970 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D TherJR_2968 transcriptional regulator, Crp/Fnr family K21555 cooA; CRP/FNR family transcriptional regulator, carbon monoxide oxidation system transcription regulator
D TherJR_1914 transcriptional regulator, BadM/Rrf2 family K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
D TherJR_0471 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D TherJR_0443 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D TherJR_0999 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator
D TherJR_2664 iron (metal) dependent repressor, DtxR family K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D TherJR_0220 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D TherJR_0985 GAF modulated sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D TherJR_2500 GAF modulated sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D TherJR_2237 putative transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein
D TherJR_0791 putative transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein
D TherJR_2553 CoA-binding domain protein K01926 rex; redox-sensing transcriptional repressor
D TherJR_1546 GTP-sensing pleiotropic transcriptional repressor CodY K03706 codY; transcriptional pleiotropic repressor
D TherJR_0896 transcriptional regulator, XRE family K07726 K07726; putative transcriptional regulator
D TherJR_0716 putative transcriptional regulator, CopG family K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
D TherJR_1921 protein of unknown function DUF156 K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D TherJR_2291 protein of unknown function DUF156 K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D TherJR_0092 transcriptional regulator, AbrB family K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D TherJR_0180 transcriptional regulator, AbrB family K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D TherJR_3008 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D TherJR_0251 transcriptional regulator, CarD family K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D TherJR_1692 arginine repressor, ArgR K03402 argR; transcriptional regulator of arginine metabolism
D TherJR_2453 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D TherJR_0240 transcriptional repressor, CtsR K03708 ctsR; transcriptional regulator of stress and heat shock response
D TherJR_2712 transcriptional regulator, DeoR family K05311 cggR; central glycolytic genes regulator
D TherJR_2330 tryptophan RNA-binding attenuator protein K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein)
D TherJR_1834 phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D TherJR_2142 ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR
D TherJR_2169 MraZ protein K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:tjr03021]
D TherJR_0324 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D TherJR_0288 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D TherJR_0289 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D TherJR_2923 DNA-directed RNA polymerase delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta
D TherJR_1808 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D TherJR_2302 RNA polymerase, sigma 70 subunit, RpoD subfamily K03086 rpoD; RNA polymerase primary sigma factor
D TherJR_0483 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D TherJR_0465 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D TherJR_0950 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D TherJR_1656 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D TherJR_2148 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D TherJR_2149 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D TherJR_1092 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D TherJR_0275 RNA polymerase, sigma-24 subunit, ECF subfamily K27000 sigH; RNA polymerase sigma-H factor
D TherJR_1185 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily K03093 sigI; RNA polymerase sigma-I factor
D TherJR_2583 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily K03093 sigI; RNA polymerase sigma-I factor
D TherJR_1059 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily K03093 sigI; RNA polymerase sigma-I factor
D TherJR_2713 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor
D TherJR_1512 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily K02405 fliA; RNA polymerase sigma factor FliA
D TherJR_1374 transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D TherJR_1715 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
D TherJR_0282 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG
D TherJR_0247 protein serine/threonine phosphatase K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
D TherJR_0516 putative PAS/PAC sensor protein K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
D TherJR_0229 GreA/GreB family elongation factor K03624 greA; transcription elongation factor GreA
D TherJR_2912 transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:tjr03019]
D TherJR_2534 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-]
D TherJR_2070 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D TherJR_1402 RNA-metabolising metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-]
D TherJR_1279 metal dependent phosphohydrolase K18682 rny; ribonucrease Y [EC:3.1.-.-]
D TherJR_2693 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D TherJR_2010 metal dependent phosphohydrolase K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-]
D TherJR_1439 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D TherJR_2707 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D TherJR_1385 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D TherJR_2912 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D TherJR_2326 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D TherJR_2450 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D TherJR_0925 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D TherJR_0775 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D TherJR_1495 RNA chaperone Hfq K03666 hfq; host factor-I protein
D TherJR_2794 carbon storage regulator, CsrA K03563 csrA; carbon storage regulator
D TherJR_2719 conserved hypothetical protein K06958 rapZ; RNase adapter protein RapZ
C 03041 Spliceosome
C 03011 Ribosome [BR:tjr03011]
D TherJR_1590 hydroxymethylbutenyl pyrophosphate reductase K02945 RP-S1; small subunit ribosomal protein S1
D TherJR_1356 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D TherJR_0302 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D TherJR_0323 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D TherJR_0313 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D TherJR_2979 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D TherJR_0292 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D TherJR_0310 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D TherJR_0332 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D TherJR_0295 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D TherJR_0322 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D TherJR_0291 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D TherJR_0321 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D TherJR_0309 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D TherJR_1384 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D TherJR_2050 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D TherJR_0305 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D TherJR_2977 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D TherJR_0300 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D TherJR_2461 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D TherJR_2444 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D TherJR_0284 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D TherJR_0299 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D TherJR_0296 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D TherJR_0297 ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4
D TherJR_0308 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D TherJR_0311 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D TherJR_2974 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D TherJR_0285 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D TherJR_0283 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D TherJR_0286 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D TherJR_0331 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D TherJR_0306 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D TherJR_0315 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D TherJR_0303 ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D TherJR_0325 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D TherJR_0312 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D TherJR_2043 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D TherJR_1875 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D TherJR_2531 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D TherJR_0301 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D TherJR_0298 Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23
D TherJR_0307 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D TherJR_2529 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D TherJR_2104 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D TherJR_0304 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D TherJR_0314 ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D TherJR_2907 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D TherJR_2080 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D TherJR_0280 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D TherJR_3017 ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D TherJR_1876 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D TherJR_0320 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D TherJR_0175 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25
D TherJR_0290 ribosomal protein L7Ae/L30e/S12e/Gadd45 K07590 RP-L7A; large subunit ribosomal protein L7A
D TherJR_R0013 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D TherJR_R0046 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D TherJR_R0018 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D TherJR_R0009 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D TherJR_R0014 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D TherJR_R0048 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D TherJR_R0012 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D TherJR_R0017 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D TherJR_R0047 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:tjr03009]
D TherJR_2070 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D TherJR_2418 GTP-binding protein Era K03595 era; GTPase
D TherJR_2521 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D TherJR_1374 transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D TherJR_1715 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
D TherJR_0282 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG
D TherJR_0149 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D TherJR_0102 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D TherJR_1794 sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D TherJR_2087 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D TherJR_2447 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D TherJR_3010 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D TherJR_2168 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D TherJR_0091 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D TherJR_1493 protein of unknown function DUF548 K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D TherJR_1698 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D TherJR_0273 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D TherJR_0133 protein of unknown function DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D TherJR_1793 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D TherJR_0890 RNA methyltransferase, TrmA family K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D TherJR_1627 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D TherJR_1837 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D TherJR_0730 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D TherJR_2047 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D TherJR_1433 MiaB-like tRNA modifying enzyme YliG K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D TherJR_2448 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D TherJR_2534 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-]
D TherJR_1900 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D TherJR_0271 ribonuclease III K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
D TherJR_1439 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D TherJR_1786 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D TherJR_1582 ribosome-associated GTPase EngA K03977 engA; GTPase
D TherJR_2041 ribosome biogenesis GTP-binding protein YlqF K14540 rbgA; ribosome biogenesis GTPase A
D TherJR_2902 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D TherJR_1206 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D TherJR_1378 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D TherJR_1373 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP
D TherJR_0003 RNA-binding S4 domain protein K14761 rlbA; ribosome-associated protein
D TherJR_2512 iojap-like protein K09710 ybeB; ribosome-associated protein
D TherJR_2421 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor
D TherJR_2519 protein of unknown function UPF0044 K07574 yhbY; RNA-binding protein
D TherJR_2776 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
D TherJR_2980 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
D TherJR_2081 protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:tjr03016]
D TherJR_1640 Polynucleotide adenylyltransferase region K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D TherJR_1368 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D TherJR_1858 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D TherJR_2509 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D TherJR_0094 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D TherJR_2924 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D TherJR_0230 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D TherJR_1923 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D TherJR_1904 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D TherJR_1878 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D TherJR_0014 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D TherJR_0270 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D TherJR_2557 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D TherJR_1924 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D TherJR_1871 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D TherJR_1870 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D TherJR_1862 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D TherJR_1638 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D TherJR_1207 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D TherJR_2445 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D TherJR_0330 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D TherJR_1380 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D TherJR_1913 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D TherJR_2902 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D TherJR_1494 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D TherJR_3012 tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D TherJR_3011 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D TherJR_0753 selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D TherJR_3016 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D TherJR_R0049 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA
D TherJR_2567 ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D TherJR_2307 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D TherJR_2404 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D TherJR_2403 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D TherJR_0268 glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D TherJR_0015 CMP/dCMP deaminase zinc-binding protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D TherJR_0226 TIM-barrel protein, nifR3 family K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D TherJR_1487 RNA modification enzyme, MiaB family K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D TherJR_2446 RNA modification enzyme, MiaB family K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D TherJR_1550 gid protein K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D TherJR_2046 tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D TherJR_2298 protein of unknown function DUF633 K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D TherJR_2351 RNA methyltransferase, TrmH family, group 2 K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D TherJR_0090 Methyltransferase type 11 K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D TherJR_1872 RNA methyltransferase, TrmH family, group 3 K03437 spoU; RNA methyltransferase, TrmH family
D TherJR_1911 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D TherJR_2388 PP-loop domain protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D TherJR_2395 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D TherJR_1273 hypothetical protein K13628 iscA; iron-sulfur cluster assembly protein
D TherJR_1188 S-adenosylmethionine/tRNA-ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D TherJR_0947 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D TherJR_0978 4Fe-4S ferredoxin iron-sulfur binding domain protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D TherJR_1183 protein of unknown function DUF208 K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D TherJR_1417 tRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D TherJR_1200 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D TherJR_0204 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D TherJR_0729 peptidase M22 glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D TherJR_0731 metalloendopeptidase, glycoprotease family K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D TherJR_0728 protein of unknown function UPF0079 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D TherJR_1922 UBA/THIF-type NAD/FAD binding protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D TherJR_2083 protein of unknown function DUF795 K27343 tmcAL; tRNA(Met) cytidine acetate ligase [EC:6.3.4.-]
D TherJR_2693 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D TherJR_1385 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:tjr03012]
D TherJR_1377 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D TherJR_1877 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D TherJR_1357 translation elongation factor Ts K02357 tsf; elongation factor Ts
D TherJR_0276 translation elongation factor Tu K02358 tuf; elongation factor Tu
D TherJR_0294 translation elongation factor Tu K02358 tuf; elongation factor Tu
D TherJR_2206 translation elongation factor G K02355 fusA; elongation factor G
D TherJR_0293 translation elongation factor G K02355 fusA; elongation factor G
D TherJR_1767 selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor
D TherJR_2905 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D TherJR_1359 ribosome recycling factor K02838 frr; ribosome recycling factor
D TherJR_2904 protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D TherJR_0176 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D TherJR_0319 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D TherJR_1731 translation elongation factor P K02356 efp; elongation factor P
D TherJR_2767 hypothetical protein K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:tjr03110]
D TherJR_0928 ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D TherJR_0243 ATPase AAA-2 domain protein K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D TherJR_2562 ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D TherJR_1547 heat shock protein HslVU, ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D TherJR_2450 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D TherJR_0925 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D TherJR_0775 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D TherJR_2452 chaperonin Cpn60/TCP-1 K22447 cct; archaeal chaperonin
D TherJR_2449 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D TherJR_0926 chaperone DnaJ domain protein K05516 cbpA; curved DNA-binding protein
D TherJR_2105 Hsp33 protein K04083 hslO; molecular chaperone Hsp33
D TherJR_2451 GrpE protein K03687 GRPE; molecular chaperone GrpE
D TherJR_0910 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein
D TherJR_2135 hypothetical protein K13993 HSP20; HSP20 family protein
D TherJR_0774 Chaperonin Cpn10 K04078 groES; chaperonin GroES
D TherJR_0173 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D TherJR_0646 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D TherJR_0205 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D TherJR_1436 Vesicle-fusing ATPase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D TherJR_2893 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D TherJR_2961 hydrogenase nickel insertion protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D TherJR_2987 hydrogenase nickel insertion protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D TherJR_2986 hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D TherJR_2829 peptidase S8 and S53 subtilisin kexin sedolisin K01280 TPP2; tripeptidyl-peptidase II [EC:3.4.14.10]
D TherJR_1920 thioredoxin K03671 TXN; thioredoxin
D TherJR_2575 conserved hypothetical protein K03671 TXN; thioredoxin
D TherJR_2208 glutaredoxin K03676 grxC; glutaredoxin 3
C 04131 Membrane trafficking [BR:tjr04131]
D TherJR_0206 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D TherJR_2729 protein of unknown function UPF0016 K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D TherJR_2711 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D TherJR_2325 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
C 04121 Ubiquitin system [BR:tjr04121]
C 03051 Proteasome [BR:tjr03051]
C 03032 DNA replication proteins [BR:tjr03032]
D TherJR_1738 Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D TherJR_2295 Cupin 2 conserved barrel domain protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D TherJR_0183 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D TherJR_1496 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D TherJR_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D TherJR_1084 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D TherJR_2972 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D TherJR_1572 IstB domain protein ATP-binding protein K02315 dnaC; DNA replication protein DnaC
D TherJR_2303 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D TherJR_2978 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D TherJR_2331 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D TherJR_1371 DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D TherJR_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D TherJR_2462 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D TherJR_0087 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D TherJR_0068 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D TherJR_2040 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D TherJR_0963 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TherJR_0850 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TherJR_0009 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D TherJR_0008 DNA topoisomerase IV, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D TherJR_1551 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:tjr03036]
D TherJR_2070 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D TherJR_0183 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D TherJR_1496 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D TherJR_0926 chaperone DnaJ domain protein K05516 cbpA; curved DNA-binding protein
D TherJR_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D TherJR_1084 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D TherJR_1495 RNA chaperone Hfq K03666 hfq; host factor-I protein
D TherJR_2063 chromosome segregation protein SMC K03529 smc; chromosome segregation protein
D TherJR_1637 chromosome segregation and condensation protein ScpA K05896 scpA; segregation and condensation protein A
D TherJR_1636 chromosome segregation and condensation protein, ScpB K06024 scpB; segregation and condensation protein B
D TherJR_2153 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D TherJR_0190 Septum formation initiator K05589 ftsB; cell division protein FtsB
D TherJR_2741 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D TherJR_1406 cell division FtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D TherJR_2167 Septum formation initiator K03586 ftsL; cell division protein FtsL
D TherJR_2156 Polypeptide-transport-associated domain protein FtsQ-type K03589 ftsQ; cell division protein FtsQ
D TherJR_2161 stage V sporulation protein E K03588 ftsW; cell division protein FtsW
D TherJR_1334 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D TherJR_2740 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein
D TherJR_2152 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D TherJR_1869 protein of unknown function DUF710 K09888 zapA; cell division protein ZapA
D TherJR_0335 N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D TherJR_2572 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D TherJR_1039 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D TherJR_2205 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D TherJR_1576 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D TherJR_1801 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D TherJR_1342 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D TherJR_2542 Septum formation inhibitor MinC K03610 minC; septum site-determining protein MinC
D TherJR_2541 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D TherJR_2540 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D TherJR_1861 DivIVA domain protein K04074 divIVA; cell division initiation protein
D TherJR_2123 protein of unknown function DUF552 K09772 sepF; cell division inhibitor SepF
D TherJR_2883 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D TherJR_2546 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D TherJR_2545 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D TherJR_2544 rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D TherJR_2539 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D TherJR_3009 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein
D TherJR_3008 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D TherJR_3011 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D TherJR_3010 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D TherJR_1550 gid protein K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D TherJR_1549 tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D TherJR_1666 tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D TherJR_1462 integrase family protein K04763 xerD; integrase/recombinase XerD
D TherJR_0182 MazG family protein K02499 yabN; tetrapyrrole methylase family protein / MazG family protein
D TherJR_0683 filamentation induced by cAMP protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D TherJR_2559 ribosome biogenesis GTP-binding protein YsxC K03978 engB; GTP-binding protein
D TherJR_2715 protein of unknown function DUF199 K09762 whiA; cell division protein WhiA
C 03400 DNA repair and recombination proteins [BR:tjr03400]
D TherJR_0781 methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D TherJR_2368 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D TherJR_1645 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D TherJR_1393 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D TherJR_2735 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D TherJR_0964 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D TherJR_1386 apurinic endonuclease Apn1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D TherJR_1205 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D TherJR_0850 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TherJR_0963 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TherJR_2732 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D TherJR_2733 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D TherJR_2731 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D TherJR_0848 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TherJR_0288 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D TherJR_0289 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D TherJR_0324 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D TherJR_2923 DNA-directed RNA polymerase delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta
D TherJR_1808 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D TherJR_0178 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D TherJR_1489 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D TherJR_1865 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2
D TherJR_1492 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D TherJR_1703 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D TherJR_1702 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D TherJR_2331 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D TherJR_1371 DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D TherJR_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D TherJR_2462 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D TherJR_0087 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D TherJR_0068 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D TherJR_2978 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D TherJR_0537 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D TherJR_1277 recA protein K03553 recA; recombination protein RecA
D TherJR_1181 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D TherJR_1182 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D TherJR_1180 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D TherJR_1798 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D TherJR_1008 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50
D TherJR_1007 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11
D TherJR_0248 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D TherJR_0004 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D TherJR_2099 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D TherJR_1081 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D TherJR_2406 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D TherJR_0070 recombination protein RecR K06187 recR; recombination protein RecR
D TherJR_1691 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D TherJR_1006 recombination helicase AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D TherJR_1005 ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D TherJR_2015 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D TherJR_2489 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D TherJR_1885 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D TherJR_1555 Ku protein K10979 ku; DNA end-binding protein Ku
D TherJR_1554 ATP dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D TherJR_1553 DNA polymerase LigD, polymerase domain protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D TherJR_0009 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D TherJR_0008 DNA topoisomerase IV, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D TherJR_1551 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D TherJR_0183 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D TherJR_1496 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D TherJR_1291 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D TherJR_1501 transcriptional repressor, LexA family K01356 lexA; repressor LexA [EC:3.4.21.88]
D TherJR_1036 DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D TherJR_1278 regulatory protein RecX K03565 recX; regulatory protein
D TherJR_1868 PHP domain protein K02347 polX; DNA polymerase (family X)
D TherJR_1959 DnaQ family exonuclease/DinG family helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D TherJR_1379 phosphoesterase RecJ domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:tjr03029]
D TherJR_1377 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D TherJR_1877 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D TherJR_1357 translation elongation factor Ts K02357 tsf; elongation factor Ts
D TherJR_0276 translation elongation factor Tu K02358 tuf; elongation factor Tu
D TherJR_0294 translation elongation factor Tu K02358 tuf; elongation factor Tu
D TherJR_2206 translation elongation factor G K02355 fusA; elongation factor G
D TherJR_0293 translation elongation factor G K02355 fusA; elongation factor G
D TherJR_2418 GTP-binding protein Era K03595 era; GTPase
D TherJR_1862 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D TherJR_2509 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D TherJR_1923 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D TherJR_2924 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D TherJR_0871 glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D TherJR_0872 glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D TherJR_0870 glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D TherJR_2978 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D TherJR_2450 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D TherJR_0925 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D TherJR_2451 GrpE protein K03687 GRPE; molecular chaperone GrpE
D TherJR_0775 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D TherJR_0774 Chaperonin Cpn10 K04078 groES; chaperonin GroES
D TherJR_2449 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D TherJR_1913 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D TherJR_3014 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D TherJR_2299 band 7 protein K17081 PHB2; prohibitin 2
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:tjr02000]
D TherJR_0698 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D TherJR_2233 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D TherJR_0699 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein
D TherJR_2232 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein
D TherJR_0700 ABC transporter related protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D TherJR_2231 ABC transporter related protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D TherJR_0792 ABC-type tungstate transport system, permease component K05772 tupA; tungstate transport system substrate-binding protein
D TherJR_0793 binding-protein-dependent transport systems inner membrane component K05773 tupB; tungstate transport system permease protein
D TherJR_0794 ABC transporter related protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D TherJR_0502 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D TherJR_1474 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D TherJR_2253 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D TherJR_2470 NMT1/THI5 like domain protein K15553 ssuA; sulfonate transport system substrate-binding protein
D TherJR_1290 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D TherJR_0503 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D TherJR_2251 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D TherJR_2469 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D TherJR_1473 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D TherJR_1472 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D TherJR_2252 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D TherJR_0504 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D TherJR_2468 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D TherJR_0600 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D TherJR_1004 NLPA lipoprotein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D TherJR_0064 NMT1/THI5 like domain protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D TherJR_0601 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D TherJR_1002 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D TherJR_0063 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D TherJR_0602 ABC transporter related protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D TherJR_1003 ABC transporter related protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D TherJR_0065 ABC transporter related protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D TherJR_2257 ABC transporter related protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D TherJR_0880 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D TherJR_1407 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D TherJR_0878 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein
D TherJR_0877 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein
D TherJR_0879 ABC transporter related protein K23537 nupA; general nucleoside transport system ATP-binding protein
D TherJR_2607 conserved hypothetical protein K02069 STAR2; UDP-glucose/iron transport system permease protein
D TherJR_2608 ABC transporter related protein K02068 STAR1; UDP-glucose/iron transport system ATP-binding protein
D TherJR_2263 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D TherJR_2262 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D TherJR_2261 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D TherJR_2313 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D TherJR_2312 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein
D TherJR_2311 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein
D TherJR_2127 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D TherJR_2585 phosphonate ABC transporter, periplasmic phosphonate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D TherJR_2587 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein
D TherJR_2586 ABC transporter related protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D TherJR_1192 polar amino acid ABC transporter, inner membrane subunit K10037 glnP; glutamine transport system permease protein
D TherJR_1193 ABC transporter related protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D TherJR_2669 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D TherJR_2668 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D TherJR_2667 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D TherJR_2666 ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D TherJR_2854 ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D TherJR_2665 ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D TherJR_2267 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D TherJR_2268 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein
D TherJR_2269 ABC transporter related protein K02071 metN; D-methionine transport system ATP-binding protein
D TherJR_2688 protein of unknown function DUF534 K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein
D TherJR_2687 inner-membrane translocator K05832 K05832; putative tryptophan/tyrosine transport system permease protein
D TherJR_2686 ABC transporter related protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein
D TherJR_0419 extracellular solute-binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D TherJR_0861 extracellular solute-binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D TherJR_1191 extracellular solute-binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D TherJR_0418 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein
D TherJR_0862 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein
D TherJR_0417 ectoine/hydroxyectoine ABC transporter, ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D TherJR_1230 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TherJR_1239 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TherJR_1095 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TherJR_0801 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TherJR_1229 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TherJR_0968 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TherJR_1231 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TherJR_1240 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TherJR_1096 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TherJR_0802 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TherJR_0969 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TherJR_1241 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TherJR_1232 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TherJR_1097 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TherJR_0970 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TherJR_0803 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TherJR_1093 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TherJR_1242 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TherJR_0971 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TherJR_0799 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TherJR_0800 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein
D TherJR_1094 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein
D TherJR_1263 cobalt transport protein K02009 cbiN; cobalt/nickel transport protein
D TherJR_1226 conserved hypothetical protein K02009 cbiN; cobalt/nickel transport protein
D TherJR_2309 cobalt ABC transporter, inner membrane subunit CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D TherJR_1264 cobalt ABC transporter, inner membrane subunit CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D TherJR_1225 cobalamin (vitamin B12) biosynthesis CbiM protein K02007 cbiM; cobalt/nickel transport system permease protein
D TherJR_1262 cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D TherJR_2308 cobalt ABC transporter, ATPase subunit K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D TherJR_1265 cobalt ABC transporter, ATPase subunit K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D TherJR_0221 BioY protein K03523 bioY; biotin transport system substrate-specific component
D TherJR_1260 conserved hypothetical protein K16927 cbrT; energy-coupling factor transport system substrate-specific component
D TherJR_0329 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein
D TherJR_1258 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein
D TherJR_0327 cobalt ABC transporter, ATPase subunit K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D TherJR_0328 ABC transporter related protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D TherJR_1259 ABC transporter related protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D TherJR_1445 ABC-2 type transporter K09694 nodJ; lipooligosaccharide transport system permease protein
D TherJR_1446 ABC transporter related protein K09695 nodI; lipooligosaccharide transport system ATP-binding protein
D TherJR_1941 ABC-2 type transporter K25181 ybhS; drug efflux transport system permease protein
D TherJR_1942 ABC transporter related protein K25182 ybhF; drug efflux transport system ATP-binding protein
D TherJR_1943 secretion protein HlyD family protein K25183 ybhG; membrane fusion protein YbhG
D TherJR_0019 hypothetical protein K16919 ytrC_D; acetoin utilization transport system permease protein
D TherJR_0018 ABC transporter related protein K16921 ytrB; acetoin utilization transport system ATP-binding protein
D TherJR_2276 cytochrome c assembly protein K02195 ccmC; heme exporter protein C
D TherJR_2277 cytochrome c-type biogenesis protein CcmB K02194 ccmB; heme exporter protein B
D TherJR_2278 heme exporter protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D TherJR_2740 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein
D TherJR_2741 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D TherJR_1110 protein of unknown function DUF990 K25154 evrC; viologen exporter family transport system permease protein
D TherJR_1109 protein of unknown function DUF990 K25155 evrB; viologen exporter family transport system permease protein
D TherJR_1108 ABC transporter related protein K25156 evrA; viologen exporter family transport system ATP-binding protein
D TherJR_2635 membrane spanning protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D TherJR_1944 daunorubicin resistance ABC transporter, inner membrane subunit B K01992 ABC-2.P; ABC-2 type transport system permease protein
D TherJR_0264 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D TherJR_2699 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D TherJR_2702 conserved hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D TherJR_2703 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D TherJR_1945 daunorubicin resistance ABC transporter ATPase subunit K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D TherJR_2700 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D TherJR_2636 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D TherJR_2632 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D TherJR_2191 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D TherJR_0818 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D TherJR_1298 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D TherJR_2189 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D TherJR_0817 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D TherJR_2190 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D TherJR_1299 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D TherJR_2633 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D TherJR_0923 ABC transporter related protein K09013 sufC; Fe-S cluster assembly ATP-binding protein
D TherJR_1041 major facilitator superfamily MFS_1 K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter
D TherJR_2612 drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D TherJR_1478 major facilitator superfamily MFS_1 K08221 yitG; MFS transporter, ACDE family, multidrug resistance protein
D TherJR_1212 TrkA-N domain protein K10716 kch; voltage-gated potassium channel
D TherJR_0702 ammonium transporter K03320 amt; ammonium transporter, Amt family
D TherJR_0705 ammonium transporter K03320 amt; ammonium transporter, Amt family
D TherJR_2982 MscS Mechanosensitive ion channel K22044 ybiO; moderate conductance mechanosensitive channel
D TherJR_2417 magnesium transporter K06213 mgtE; magnesium transporter
D TherJR_2770 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D TherJR_2769 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D TherJR_2407 Mg2 transporter protein CorA family protein K03284 corA; magnesium transporter
D TherJR_1274 Mg2 transporter protein CorA family protein K03284 corA; magnesium transporter
D TherJR_0585 CrcB protein K06199 crcB; fluoride exporter
D TherJR_0586 CrcB protein K06199 crcB; fluoride exporter
D TherJR_1613 LrgA family protein K06518 cidA; holin-like protein
D TherJR_0634 LrgA family protein K06518 cidA; holin-like protein
D TherJR_0616 microcompartments protein K27260 pduA; bacterial microcompartment shell protein
D TherJR_0624 microcompartments protein K27260 pduA; bacterial microcompartment shell protein
D TherJR_0045 microcompartments protein K04027 eutM; ethanolamine utilization protein EutM
D TherJR_2524 spore germination protein K06296 gerKB; spore germination protein KB
D TherJR_0455 cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D TherJR_0109 zinc/iron permease K07238 TC.ZIP; zinc transporter, ZIP family
D TherJR_1644 small multidrug resistance protein K11741 sugE; quaternary ammonium compound-resistance protein SugE
D TherJR_0517 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D TherJR_2948 choline/carnitine/betaine transporter K05020 opuD; glycine betaine transporter
D TherJR_2946 choline/carnitine/betaine transporter K05020 opuD; glycine betaine transporter
D TherJR_2558 sodium/calcium exchanger membrane region K07301 yrbG; cation:H+ antiporter
D TherJR_2092 Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family
D TherJR_2903 sodium/hydrogen exchanger K26730 napA; Na+:H+ antiporter
D TherJR_1874 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein
D TherJR_1873 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein
D TherJR_1149 uracil-xanthine permease K02824 uraA; uracil permease
D TherJR_0823 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D TherJR_2663 Mn2+/Fe2+ transporter, NRAMP family K03322 mntH; manganese transport protein
D TherJR_2196 Na/Pi-cotransporter II-related protein K03324 yjbB; phosphate:Na+ symporter
D TherJR_0472 arsenical-resistance protein K03325 ACR3; arsenite transporter
D TherJR_1578 Bile acid:sodium symporter K03325 ACR3; arsenite transporter
D TherJR_0181 polysaccharide biosynthesis protein K06409 spoVB; stage V sporulation protein B
D TherJR_1928 stage V sporulation protein B K06409 spoVB; stage V sporulation protein B
D TherJR_2823 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D TherJR_2457 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D TherJR_0482 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D TherJR_1615 Lysine exporter protein (LYSE/YGGA) K06895 lysE; L-lysine exporter family protein LysE/ArgO
D TherJR_0919 AzlC family protein K26605 azlC; branched chain amino acid efflux pump
D TherJR_0920 branched-chain amino acid transport K26606 azlD; branched chain amino acid efflux pump
D TherJR_0446 conserved hypothetical protein K23675 fmnP; riboflavin transporter
D TherJR_0946 conserved hypothetical protein K09125 yhhQ; queuosine precursor transporter
D TherJR_2161 stage V sporulation protein E K03588 ftsW; cell division protein FtsW
D TherJR_1334 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D TherJR_2729 protein of unknown function UPF0016 K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D TherJR_2706 V-type H(+)-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D TherJR_1720 oxaloacetate decarboxylase alpha subunit K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D TherJR_2574 cytochrome c biogenesis protein transmembrane region K06196 ccdA; cytochrome c-type biogenesis protein
D TherJR_0469 cytochrome c biogenesis protein transmembrane region K06196 ccdA; cytochrome c-type biogenesis protein
D TherJR_1801 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D TherJR_1325 ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D TherJR_2282 cytochrome c assembly protein K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D TherJR_1370 MgtC/SapB transporter K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
C 02044 Secretion system [BR:tjr02044]
D TherJR_1751 type II secretion system protein G K02456 gspG; general secretion pathway protein G
D TherJR_1750 peptidase A24A domain protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D TherJR_1754 general secretory pathway protein E K02652 pilB; type IV pilus assembly protein PilB
D TherJR_1752 Type II secretion system F domain protein K02653 pilC; type IV pilus assembly protein PilC
D TherJR_1745 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D TherJR_1744 Fimbrial assembly family protein K02663 pilN; type IV pilus assembly protein PilN
D TherJR_1743 hypothetical protein K02664 pilO; type IV pilus assembly protein PilO
D TherJR_1753 twitching motility protein K02669 pilT; twitching motility protein PilT
D TherJR_2433 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D TherJR_2814 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D TherJR_2811 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB
D TherJR_2810 response regulator receiver protein K02282 cpaE; pilus assembly protein CpaE
D TherJR_0382 conserved hypothetical protein K02282 cpaE; pilus assembly protein CpaE
D TherJR_2440 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D TherJR_2809 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D TherJR_0383 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D TherJR_0813 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D TherJR_2439 Type II secretion system F domain protein K12510 tadB; tight adherence protein B
D TherJR_2808 Type II secretion system F domain protein K12510 tadB; tight adherence protein B
D TherJR_0384 Type II secretion system F domain protein K12510 tadB; tight adherence protein B
D TherJR_2438 Type II secretion system F domain protein K12511 tadC; tight adherence protein C
D TherJR_2807 Type II secretion system F domain protein K12511 tadC; tight adherence protein C
D TherJR_0385 Type II secretion system F domain protein K12511 tadC; tight adherence protein C
D TherJR_2815 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA
D TherJR_1217 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA
D TherJR_2121 protein of unknown function YGGT K02221 yggT; YggT family protein
D TherJR_2464 competence protein ComEA helix-hairpin-helix repeat protein K02237 comEA; competence protein ComEA
D TherJR_2897 CMP/dCMP deaminase zinc-binding protein K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D TherJR_2463 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D TherJR_2803 helicase domain protein K02240 comFA; competence protein ComFA
D TherJR_1214 Late competence development protein ComFB K02241 comFB; competence protein ComFB
D TherJR_1522 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D TherJR_1523 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D TherJR_1053 type III secretion exporter K04061 flhB2; flagellar biosynthesis protein
D TherJR_1542 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D TherJR_1540 Flagellar assembly protein FliH/Type III secretion system HrpE K02411 fliH; flagellar assembly protein FliH
D TherJR_1539 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D TherJR_1529 CheC, inhibitor of MCP methylation / FliN fusion protein K02417 fliN; flagellar motor switch protein FliN
D TherJR_1527 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D TherJR_1526 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D TherJR_1525 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D TherJR_1524 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D TherJR_2771 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D TherJR_1203 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D TherJR_0281 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D TherJR_1204 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D TherJR_2697 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D TherJR_0316 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D TherJR_2051 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D TherJR_2061 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D TherJR_1201 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D TherJR_3014 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D TherJR_1769 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D TherJR_1816 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D TherJR_0236 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D TherJR_1115 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D TherJR_1768 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:tjr02042]
C 02022 Two-component system [BR:tjr02022]
D TherJR_2128 multi-sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D TherJR_2315 two component transcriptional regulator, winged helix family K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D TherJR_2129 two component transcriptional regulator, winged helix family K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D TherJR_2641 two component transcriptional regulator, winged helix family K07775 resD; two-component system, OmpR family, response regulator ResD
D TherJR_1220 two component transcriptional regulator, winged helix family K07775 resD; two-component system, OmpR family, response regulator ResD
D TherJR_2640 integral membrane sensor signal transduction histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D TherJR_2683 integral membrane sensor signal transduction histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3]
D TherJR_2684 two component transcriptional regulator, winged helix family K18941 arlR; two-component system, OmpR family, response regulator ArlR
D TherJR_1195 integral membrane sensor signal transduction histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D TherJR_2818 Histidine kinase K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3]
D TherJR_2817 two component transcriptional regulator, LuxR family K07692 degU; two-component system, NarL family, response regulator DegU
D TherJR_2919 response regulator receiver protein K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F
D TherJR_0723 response regulator receiver protein K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F
D TherJR_1689 sporulation transcriptional activator Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A
D TherJR_0798 response regulator receiver and unknown domain protein K11692 K11692; two-component system, CitB family, response regulator DctR
D TherJR_0652 two component transcriptional regulator, LytTR family K02477 K02477; two-component system, LytTR family, response regulator
D TherJR_2760 two component transcriptional regulator, LytTR family K02477 K02477; two-component system, LytTR family, response regulator
D TherJR_0797 integral membrane sensor signal transduction histidine kinase K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D TherJR_1947 signal transduction histidine kinase, nitrogen specific, NtrB K07710 atoS; two-component system, NtrC family, sensor histidine kinase AtoS [EC:2.7.13.3]
D TherJR_1517 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D TherJR_0111 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D TherJR_1528 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D TherJR_0112 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D TherJR_1518 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D TherJR_0113 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D TherJR_0051 transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D TherJR_0615 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D TherJR_0708 response regulator receiver and ANTAR domain protein K22010 pdtaR; two-component system, response regulator PdtaR
D TherJR_0659 response regulator receiver and ANTAR domain protein K22010 pdtaR; two-component system, response regulator PdtaR
D TherJR_0662 response regulator receiver and ANTAR domain protein K22010 pdtaR; two-component system, response regulator PdtaR
C 02035 Bacterial motility proteins [BR:tjr02035]
D TherJR_1517 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D TherJR_0111 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D TherJR_0653 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D TherJR_1516 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D TherJR_0110 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D TherJR_1596 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D TherJR_0114 CheC domain protein K03409 cheX; chemotaxis protein CheX
D TherJR_0115 chemotaxis protein K03409 cheX; chemotaxis protein CheX
D TherJR_0224 chemotaxis protein K03409 cheX; chemotaxis protein CheX
D TherJR_1515 CheC, inhibitor of MCP methylation K03410 cheC; chemotaxis protein CheC
D TherJR_1514 CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D TherJR_1144 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D TherJR_1518 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D TherJR_0113 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D TherJR_1528 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D TherJR_0112 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D TherJR_0123 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D TherJR_0184 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D TherJR_0843 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D TherJR_1595 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D TherJR_2197 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D TherJR_2630 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D TherJR_1540 Flagellar assembly protein FliH/Type III secretion system HrpE K02411 fliH; flagellar assembly protein FliH
D TherJR_1539 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D TherJR_1538 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D TherJR_1527 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D TherJR_1526 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D TherJR_1525 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D TherJR_1524 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D TherJR_1522 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D TherJR_1523 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D TherJR_1541 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D TherJR_1530 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D TherJR_1529 CheC, inhibitor of MCP methylation / FliN fusion protein K02417 fliN; flagellar motor switch protein FliN
D TherJR_1542 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D TherJR_1531 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D TherJR_1543 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D TherJR_1536 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D TherJR_1545 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D TherJR_1544 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D TherJR_1535 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D TherJR_2882 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D TherJR_2881 fagellar hook-basal body protein K02392 flgG; flagellar basal-body rod protein FlgG
D TherJR_2880 Flagellar protein FlgJ-like protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D TherJR_1533 fagellar hook-basal body protein K02390 flgE; flagellar hook protein FlgE
D TherJR_2798 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D TherJR_2797 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D TherJR_2793 flagellin domain protein K02406 fliC; flagellin
D TherJR_2791 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2
D TherJR_2779 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D TherJR_1512 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily K02405 fliA; RNA polymerase sigma factor FliA
D TherJR_2770 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D TherJR_2769 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D TherJR_2795 protein of unknown function DUF180 K13626 fliW; flagellar assembly factor FliW
D TherJR_2792 flagellar protein FlaG protein K06603 flaG; flagellar protein FlaG
D TherJR_1537 MgtE intracellular region K02383 flbB; flagellar protein FlbB
D TherJR_1532 flagellar FlbD family protein K02385 flbD; flagellar protein FlbD
D TherJR_1521 flagellar biosynthetic protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF
D TherJR_1520 Cobyrinic acid ac-diamide synthase K04562 flhG; flagellar biosynthesis protein FlhG
D TherJR_1753 twitching motility protein K02669 pilT; twitching motility protein PilT
D TherJR_1754 general secretory pathway protein E K02652 pilB; type IV pilus assembly protein PilB
D TherJR_1752 Type II secretion system F domain protein K02653 pilC; type IV pilus assembly protein PilC
D TherJR_1750 peptidase A24A domain protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D TherJR_1743 hypothetical protein K02664 pilO; type IV pilus assembly protein PilO
D TherJR_1744 Fimbrial assembly family protein K02663 pilN; type IV pilus assembly protein PilN
D TherJR_1745 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D TherJR_2815 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA
D TherJR_1217 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA
D TherJR_2433 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D TherJR_2814 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D TherJR_2811 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB
D TherJR_2810 response regulator receiver protein K02282 cpaE; pilus assembly protein CpaE
D TherJR_0382 conserved hypothetical protein K02282 cpaE; pilus assembly protein CpaE
D TherJR_2440 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D TherJR_2809 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D TherJR_0383 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D TherJR_0813 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:tjr04812]
D TherJR_0336 AMMECR1 domain protein K06990 MEMO1; MEMO1 family protein
D TherJR_2883 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D TherJR_2546 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D TherJR_2152 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D TherJR_2153 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D TherJR_1342 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D TherJR_2542 Septum formation inhibitor MinC K03610 minC; septum site-determining protein MinC
D TherJR_2541 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D TherJR_2540 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D TherJR_3009 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein
D TherJR_3008 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:tjr04147]
D TherJR_2707 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D TherJR_2711 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D TherJR_2710 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D TherJR_2325 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D TherJR_1283 Membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D TherJR_0775 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D TherJR_2450 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D TherJR_0925 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D TherJR_1319 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D TherJR_0276 translation elongation factor Tu K02358 tuf; elongation factor Tu
D TherJR_0294 translation elongation factor Tu K02358 tuf; elongation factor Tu
D TherJR_2445 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D TherJR_0751 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D TherJR_2695 o-succinylbenzoate--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D TherJR_2696 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D TherJR_2058 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D TherJR_1985 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D TherJR_0356 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D TherJR_0354 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D TherJR_0709 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D TherJR_0710 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D TherJR_1138 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D TherJR_0208 Formate--tetrahydrofolate ligase K00288 MTHFD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase / formyltetrahydrofolate synthetase [EC:1.5.1.5 3.5.4.9 6.3.4.3]
D TherJR_0013 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D TherJR_0830 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D TherJR_2299 band 7 protein K17081 PHB2; prohibitin 2
D TherJR_2709 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:tjr02048]
D TherJR_2015 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D TherJR_2489 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D TherJR_1885 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D TherJR_2488 CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2
D TherJR_1884 CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2
D TherJR_2014 CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2
D TherJR_1890 metal dependent phosphohydrolase K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D TherJR_2491 metal dependent phosphohydrolase K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D TherJR_1886 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D TherJR_2490 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D TherJR_2497 CRISPR-associated protein Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
D TherJR_2017 Protein of unknown function DUF2276 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
D TherJR_2495 CRISPR-associated protein TM1802 family K19114 csh1; CRISPR-associated protein Csh1
D TherJR_2493 CRISPR-associated protein, Csh2 family K19115 csh2; CRISPR-associated protein Csh2
D TherJR_2492 CRISPR-associated protein Cas5, Hmari subtype K19116 cas5h; CRISPR-associated protein Cas5h
D TherJR_1888 CRISPR-associated protein, Csd1 family K19117 csd1; CRISPR-associated protein Csd1
D TherJR_1887 CRISPR-associated protein, Csd2 family K19118 csd2; CRISPR-associated protein Csd2
D TherJR_1889 CRISPR-associated protein Cas5 family K19119 cas5d; CRISPR-associated protein Cas5d
D TherJR_2478 protein of unknown function DUF324 K19134 csx10; CRISPR-associated protein Csx10
D TherJR_2022 CRISPR-associated protein, Csm1 family K07016 csm1; CRISPR-associated protein Csm1
D TherJR_2021 CRISPR-associated protein, Csm2 family K19138 csm2; CRISPR-associated protein Csm2
D TherJR_2020 CRISPR-associated RAMP protein, Csm3 family K09002 csm3; CRISPR-associated protein Csm3
D TherJR_2019 CRISPR-associated RAMP protein, Csm4 family K19139 csm4; CRISPR-associated protein Csm4
D TherJR_2018 CRISPR-associated RAMP protein, Csm5 family K19140 csm5; CRISPR-associated protein Csm5
D TherJR_0901 type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D TherJR_0900 restriction modification system DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D TherJR_0899 Site-specific DNA-methyltransferase (adenine-specific) K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D TherJR_1074 Type III site-specific deoxyribonuclease K01156 res; type III restriction enzyme [EC:3.1.21.5]
D TherJR_1073 Site-specific DNA-methyltransferase (adenine-specific) K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D TherJR_1836 restriction endonuclease K07448 mrr; restriction system protein
D TherJR_0136 transcriptional modulator of MazE/toxin, MazF K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D TherJR_0717 transcriptional modulator of MazE/toxin, MazF K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D TherJR_0530 transcriptional modulator of MazE/toxin, MazF K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D TherJR_0531 transcriptional regulator/antitoxin, MazE K07172 mazE; antitoxin MazE
D TherJR_2874 SpoVT/AbrB domain protein K07172 mazE; antitoxin MazE
D TherJR_0716 putative transcriptional regulator, CopG family K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
D TherJR_1454 addiction module antitoxin, RelB/DinJ family K07473 dinJ; DNA-damage-inducible protein J
D TherJR_0167 plasmid stabilization system K19092 parE1_3_4; toxin ParE1/3/4
D TherJR_0533 addiction module toxin, RelE/StbE family K19092 parE1_3_4; toxin ParE1/3/4
D TherJR_0895 addiction module toxin, RelE/StbE family K19092 parE1_3_4; toxin ParE1/3/4
D TherJR_1453 plasmid stabilization system K19092 parE1_3_4; toxin ParE1/3/4
D TherJR_0973 addiction module toxin, RelE/StbE family K19092 parE1_3_4; toxin ParE1/3/4
D TherJR_0538 prevent-host-death family protein K19165 phd; antitoxin Phd
D TherJR_2152 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D TherJR_2883 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D TherJR_2546 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D TherJR_1913 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:tjr01504]
D TherJR_2640 integral membrane sensor signal transduction histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D TherJR_1801 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:tjr00537]
D TherJR_1283 Membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:tjr03100]
D TherJR_R0062 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D TherJR_R0011 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D TherJR_R0016 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D TherJR_R0059 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D TherJR_R0004 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D TherJR_R0003 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D TherJR_R0044 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D TherJR_R0053 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D TherJR_R0019 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D TherJR_R0031 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D TherJR_R0040 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D TherJR_R0035 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D TherJR_R0057 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D TherJR_R0038 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D TherJR_R0065 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D TherJR_R0051 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D TherJR_R0054 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D TherJR_R0033 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D TherJR_R0060 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D TherJR_R0064 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D TherJR_R0058 tRNA-His K14226 tRNA-His; tRNA His
D TherJR_R0010 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D TherJR_R0015 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D TherJR_R0034 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D TherJR_R0055 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D TherJR_R0028 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D TherJR_R0037 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D TherJR_R0026 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D TherJR_R0066 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D TherJR_R0056 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D TherJR_R0027 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D TherJR_R0024 tRNA-Met K14230 tRNA-Met; tRNA Met
D TherJR_R0022 tRNA-Met K14230 tRNA-Met; tRNA Met
D TherJR_R0052 tRNA-Met K14230 tRNA-Met; tRNA Met
D TherJR_R0032 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D TherJR_R0061 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D TherJR_R0045 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D TherJR_R0029 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D TherJR_R0005 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D TherJR_R0001 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D TherJR_R0002 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D TherJR_R0007 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D TherJR_R0023 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D TherJR_R0020 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D TherJR_R0025 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D TherJR_R0041 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D TherJR_R0039 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D TherJR_R0021 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D TherJR_R0030 tRNA-Val K14237 tRNA-Val; tRNA Val
D TherJR_R0050 tRNA-Val K14237 tRNA-Val; tRNA Val
D TherJR_R0042 tRNA-Val K14237 tRNA-Val; tRNA Val
D TherJR_R0036 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D TherJR_R0067 tRNA-Pyl K14239 tRNA-Pyl; tRNA Pyl
D TherJR_R0009 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D TherJR_R0014 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D TherJR_R0048 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D TherJR_R0012 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D TherJR_R0017 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D TherJR_R0047 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D TherJR_R0013 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D TherJR_R0046 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D TherJR_R0018 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D TherJR_R0008 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA
D TherJR_R0049 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA
D TherJR_R0063 ssrA; tmRNA as predicted by Rfam (RF00023), score 227.53 K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D TherJR_2927 indolepyruvate ferredoxin oxidoreductase, alpha subunit K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8]
D TherJR_2410 indolepyruvate ferredoxin oxidoreductase, alpha subunit K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8]
D TherJR_2926 Indolepyruvate ferredoxin oxidoreductase K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8]
D TherJR_2409 Pyruvate/ketoisovalerate oxidoreductase K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8]
D TherJR_2412 NAD/NADP octopine/nopaline dehydrogenase K04940 odh; opine dehydrogenase [EC:1.5.1.28]
D TherJR_2550 ferredoxin K17992 hndB; NADP-reducing hydrogenase subunit HndB [EC:1.12.1.3]
D TherJR_2552 NADH dehydrogenase (ubiquinone) 24 kDa subunit K18330 hndA; NADP-reducing hydrogenase subunit HndA [EC:1.12.1.3]
D TherJR_2551 NADH dehydrogenase (quinone) K18331 hndC; NADP-reducing hydrogenase subunit HndC [EC:1.12.1.3]
D TherJR_0743 molybdopterin oxidoreductase K18332 hndD; NADP-reducing hydrogenase subunit HndD [EC:1.12.1.3]
D TherJR_2965 NADH ubiquinone oxidoreductase 20 kDa subunit K18023 mbhJ; membrane-bound hydrogenase subunit mbhJ [EC:1.12.7.2]
D TherJR_0441 desulfoferrodoxin K05919 dfx; superoxide reductase [EC:1.15.1.2]
D TherJR_0948 Bilirubin oxidase K06324 cotA; spore coat protein A, manganese oxidase [EC:1.16.3.3]
D TherJR_1708 oxidoreductase FAD/NAD(P)-binding domain protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D TherJR_2139 anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D TherJR_0337 Radical SAM domain protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D TherJR_2339 glycosyl transferase group 1 K00754 bshA; L-malate glycosyltransferase [EC:2.4.1.-]
D TherJR_3000 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143]
D TherJR_2272 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D TherJR_0733 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D TherJR_0629 ATP/cobalamin adenosyltransferase K27270 pduO; corrinoid adenosyltransferase [EC:2.5.1.-]
D TherJR_2101 DAK2 domain fusion protein YloV K07030 fakA; fatty acid kinase [EC:2.7.2.18]
D TherJR_2401 protein of unknown function DUF299 K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D TherJR_0245 RNA-directed DNA polymerase (Reverse transcriptase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D TherJR_2588 RNA-directed DNA polymerase (Reverse transcriptase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D TherJR_0249 DNA integrity scanning, DisA, linker region K07067 disA; diadenylate cyclase [EC:2.7.7.85]
D TherJR_0376 protein of unknown function DUF147 K18672 dacA; diadenylate cyclase [EC:2.7.7.85]
D TherJR_2680 protein of unknown function DUF147 K18672 dacA; diadenylate cyclase [EC:2.7.7.85]
D TherJR_1040 pyruvate phosphate dikinase PEP/pyruvate-binding protein K22579 rph; rifampicin phosphotransferase [EC:2.7.9.6]
D TherJR_1657 putative anti-sigma regulatory factor, serine/threonine protein kinase K06379 spoIIAB; stage II sporulation protein AB (anti-sigma F factor) [EC:2.7.11.1]
D TherJR_0242 ATP:guanido phosphotransferase K19405 mcsB; protein arginine kinase [EC:2.7.14.1]
D TherJR_0207 conserved hypothetical protein K18700 flK; fluoroacetyl-CoA thioesterase [EC:3.1.2.29]
D TherJR_2377 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D TherJR_0202 protein serine/threonine phosphatase K06382 spoIIE; stage II sporulation protein E [EC:3.1.3.16]
D TherJR_2593 PHP domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D TherJR_1211 PHP domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D TherJR_1758 HAD superfamily (subfamily IIIA) phosphatase, TIGR01668 K07015 yqeG; putative phosphatase [EC:3.1.3.-]
D TherJR_1354 protein of unknown function DUF89 K09116 K09116; damage-control phosphatase, subfamily I [EC:3.1.3.-]
D TherJR_2422 7TM receptor with intracellular metal dependent phosphohydrolase K07037 pgpH; cyclic-di-AMP phosphodiesterase PgpH [EC:3.1.4.-]
D TherJR_0095 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D TherJR_1287 nuclease (SNase domain protein) K01174 nuc; micrococcal nuclease [EC:3.1.31.1]
D TherJR_1797 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D TherJR_2340 LmbE family protein K01463 bshB1; N-acetylglucosamine malate deacetylase 1 [EC:3.5.1.-]
D TherJR_1209 polysaccharide deacetylase K01567 pdaA; peptidoglycan-N-acetylmuramic acid deacetylase [EC:3.5.1.-]
D TherJR_0054 ATPase associated with various cellular activities AAA_5 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D TherJR_0783 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D TherJR_2900 protein tyrosine phosphatase K20201 ywlE; protein arginine phosphatase [EC:3.9.1.2]
D TherJR_2202 Radical SAM domain protein K03716 splB; spore photoproduct lyase [EC:4.1.99.14]
D TherJR_0655 carbohydrate kinase, YjeF related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D TherJR_2999 Queuosine synthesis-like protein K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37]
D TherJR_3001 protein of unknown function DUF111 K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12]
D TherJR_1812 lysine 2,3-aminomutase YodO family protein K19814 eam; glutamate 2,3-aminomutase [EC:5.4.3.9]
D TherJR_0858 CoA-substrate-specific enzyme activase K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9]
D TherJR_2569 CoA-substrate-specific enzyme activase K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9]
D TherJR_0126 cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30]
D TherJR_0444 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
C 99981 Carbohydrate metabolism
D TherJR_2179 sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A
D TherJR_2350 CBS domain containing membrane protein K04767 acuB; acetoin utilization protein AcuB
D TherJR_0754 protein of unknown function UCP012535 K22136 bshC; bacillithiol synthase
D TherJR_0621 Diol/glycerol dehydratase reactivating factor large subunit K27264 pduG; propanediol dehydratase-reactivating factor large subunit
D TherJR_0622 glycerol dehydratase reactivation factor, small subunit K27265 pduH; propanediol dehydratase-reactivating factor small subunit
C 99982 Energy metabolism
D TherJR_0854 Rubrerythrin K19824 fprB; rubrerythrin
D TherJR_2345 formate dehydrogenase family accessory protein FdhD K02379 fdhD; FdhD protein
D TherJR_2373 4Fe-4S ferredoxin iron-sulfur binding domain protein K05337 fer; ferredoxin
D TherJR_1912 FeS cluster assembly scaffold protein NifU K04488 iscU; nitrogen fixation protein NifU and related proteins
D TherJR_2964 4Fe-4S ferredoxin iron-sulfur binding domain protein K15831 hycF; formate hydrogenlyase subunit 6
D TherJR_0695 nitrogenase cofactor biosynthesis protein NifB K02585 nifB; nitrogen fixation protein NifB
D TherJR_0694 Nitrogenase K02592 nifN; nitrogenase molybdenum-iron protein NifN
D TherJR_0693 nitrogenase MoFe cofactor biosynthesis protein NifE K02587 nifE; nitrogenase molybdenum-cofactor synthesis protein NifE
D TherJR_2962 NADH dehydrogenase (quinone) K14090 echE; ech hydrogenase subunit E
D TherJR_1655 protein of unknown function DUF1458 K09165 K09165; dodecin
C 99983 Lipid metabolism
D TherJR_2100 degV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit
D TherJR_1448 degV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D TherJR_0626 ethanolamine utilization protein EutJ family protein K04024 eutJ; ethanolamine utilization protein EutJ
D TherJR_0039 ethanolamine utilization protein EutJ family protein K04024 eutJ; ethanolamine utilization protein EutJ
D TherJR_0037 microcompartments protein K04026 eutL; ethanolamine utilization protein EutL
D TherJR_0033 ethanolamine utilization protein EutP K04029 eutP; ethanolamine utilization protein EutP
D TherJR_0044 Ethanolamine utilization EutQ family protein K04030 eutQ; ethanolamine utilization protein EutQ
D TherJR_0032 microcompartments protein K04031 eutS; ethanolamine utilization protein EutS
D TherJR_2124 alanine racemase domain protein K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D TherJR_2836 conserved hypothetical protein K07027 K07027; glycosyltransferase 2 family protein
D TherJR_1387 cell wall hydrolase SleB K01449 cwlJ; cell wall hydrolase
D TherJR_2131 cell wall hydrolase SleB K01449 cwlJ; cell wall hydrolase
C 99987 Cofactor metabolism
D TherJR_2933 ABC-1 domain protein K03688 ubiB; ubiquinone biosynthesis protein
D TherJR_0922 ABC-1 domain protein K03688 ubiB; ubiquinone biosynthesis protein
D TherJR_2344 molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
D TherJR_0042 Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K27271 pduS; cobalamin reductase
D TherJR_0631 Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K27271 pduS; cobalamin reductase
C 99988 Secondary metabolism
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D TherJR_2777 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein
D TherJR_0945 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein
D TherJR_0689 nitrogen regulatory protein P-II K02589 nifHD1; nitrogen regulatory protein PII 1
D TherJR_0690 nitrogen regulatory protein P-II K02590 nifHD2; nitrogen regulatory protein PII 2
D TherJR_1810 protein of unknown function DUF370 K09777 remA; extracellular matrix regulatory protein A
D TherJR_0005 conserved hypothetical protein K24648 remB; extracellular matrix regulatory protein B
C 99974 Translation
D TherJR_0191 RNA binding S1 domain protein K07571 K07571; S1 RNA binding domain protein
C 99975 Protein processing
D TherJR_0241 UvrB/UvrC protein K19411 mcsA; protein arginine kinase activator
D TherJR_2564 trigger factor K03545 tig; trigger factor
D TherJR_0773 formate dehydrogenase accessory protein K02380 fdhE; FdhE protein
D TherJR_1817 formate dehydrogenase accessory protein K02380 fdhE; FdhE protein
D TherJR_0608 UreE urease accessory domain protein K03187 ureE; urease accessory protein
D TherJR_0609 Urease accessory protein UreF K03188 ureF; urease accessory protein
D TherJR_0610 urease accessory protein UreG K03189 ureG; urease accessory protein
D TherJR_0611 Urease accessory protein UreD K03190 ureD; urease accessory protein
D TherJR_2690 SsrA-binding protein K03664 smpB; SsrA-binding protein
D TherJR_1301 hydrogenase assembly chaperone hypC/hupF K04653 hypC; hydrogenase expression/formation protein HypC
D TherJR_1302 hydrogenase expression/formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D TherJR_2957 hydrogenase assembly chaperone hypC/hupF K04654 hypD; hydrogenase expression/formation protein HypD
D TherJR_1303 hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE
D TherJR_1300 (NiFe) hydrogenase maturation protein HypF K04656 hypF; hydrogenase maturation protein HypF
D TherJR_2026 Mg chelatase, subunit ChlI K07391 comM; magnesium chelatase family protein
D TherJR_2220 ResB-like protein required for cytochrome c biosynthesis K07399 resB; cytochrome c biogenesis protein
D TherJR_1131 ResB family protein K07399 resB; cytochrome c biogenesis protein
D TherJR_2862 hypothetical protein K07399 resB; cytochrome c biogenesis protein
D TherJR_2428 protein of unknown function DUF107 K07403 nfeD; membrane-bound serine protease (ClpP class)
C 99976 Replication and repair
D TherJR_2547 DNA repair protein RadC K03630 radC; DNA repair protein RadC
D TherJR_1980 HhH-GPD family protein K07457 K07457; endonuclease III related protein
D TherJR_0428 SMC domain protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D TherJR_2027 protein of unknown function UPF0102 K07460 yraN; putative endonuclease
D TherJR_1552 transcriptional regulator, MarR family K04096 smf; DNA processing protein
D TherJR_1573 primosome, DnaD subunit K02086 dnaD; DNA replication protein
D TherJR_1916 AAA ATPase central domain protein K07478 ycaJ; putative ATPase
D TherJR_1467 transposase mutator type K07493 K07493; putative transposase
D TherJR_1999 transposase mutator type K07493 K07493; putative transposase
D TherJR_0480 Integrase catalytic region K07497 K07497; putative transposase
D TherJR_0560 Integrase catalytic region K07497 K07497; putative transposase
D TherJR_2745 transposase IS3/IS911 family protein K07497 K07497; putative transposase
D TherJR_1882 Integrase catalytic region K07497 K07497; putative transposase
D TherJR_1476 Integrase catalytic region K07497 K07497; putative transposase
D TherJR_2644 Integrase catalytic region K07497 K07497; putative transposase
D TherJR_2486 Integrase catalytic region K07497 K07497; putative transposase
D TherJR_2003 Integrase catalytic region K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D TherJR_0069 conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
D TherJR_1762 conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D TherJR_0933 acriflavin resistance protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D TherJR_1112 acriflavin resistance protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D TherJR_2054 phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family
D TherJR_0031 Na+/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D TherJR_2929 SSS sodium solute transporter superfamily K03307 TC.SSS; solute:Na+ symporter, SSS family
D TherJR_0552 permease for cytosine/purines uracil thiamine allantoin K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
C 99978 Cell growth
D TherJR_2958 Cobyrinic acid ac-diamide synthase K07321 cooC; CO dehydrogenase maturation factor
D TherJR_2204 Cobyrinic acid ac-diamide synthase K07321 cooC; CO dehydrogenase maturation factor
D TherJR_1156 Cobyrinic acid ac-diamide synthase K07321 cooC; CO dehydrogenase maturation factor
D TherJR_0074 pro-sigmaK processing inhibitor BofA K06317 bofA; inhibitor of the pro-sigma K processing machinery
D TherJR_1106 Spore coat protein CotE K06328 cotE; spore coat protein E
D TherJR_1105 hypothetical protein K06328 cotE; spore coat protein E
D TherJR_2392 conserved hypothetical protein K06333 cotJB; spore coat protein JB
D TherJR_2393 Catalase K06334 cotJC; spore coat protein JC
D TherJR_3013 single-stranded nucleic acid binding R3H domain protein K06346 jag; spoIIIJ-associated protein
D TherJR_1629 nucleoside recognition domain protein K06373 spmA; spore maturation protein A
D TherJR_1628 nucleoside recognition domain protein K06374 spmB; spore maturation protein B
D TherJR_1152 SpoOM family protein K06377 spo0M; sporulation-control protein
D TherJR_1658 anti-sigma-factor antagonist K06378 spoIIAA; stage II sporulation protein AA (anti-sigma F factor antagonist)
D TherJR_1854 anti-sigma-factor antagonist K06378 spoIIAA; stage II sporulation protein AA (anti-sigma F factor antagonist)
D TherJR_1668 stage II sporulation protein M K06384 spoIIM; stage II sporulation protein M
D TherJR_2459 stage II sporulation protein P K06385 spoIIP; stage II sporulation protein P
D TherJR_1588 stage II sporulation protein P K06385 spoIIP; stage II sporulation protein P
D TherJR_2147 stage II sporulation protein R K06387 spoIIR; stage II sporulation protein R
D TherJR_1728 stage III sporulation protein AA K06390 spoIIIAA; stage III sporulation protein AA
D TherJR_1727 stage III sporulation protein AB K06391 spoIIIAB; stage III sporulation protein AB
D TherJR_1726 stage III sporulation protein AC K06392 spoIIIAC; stage III sporulation protein AC
D TherJR_1725 stage III sporulation protein AD K06393 spoIIIAD; stage III sporulation protein AD
D TherJR_1724 stage III sporulation protein AE K06394 spoIIIAE; stage III sporulation protein AE
D TherJR_1723 stage III sporulation protein AF K06395 spoIIIAF; stage III sporulation protein AF
D TherJR_1722 stage III sporulation protein AG K06396 spoIIIAG; stage III sporulation protein AG
D TherJR_1721 conserved hypothetical protein K06397 spoIIIAH; stage III sporulation protein AH
D TherJR_1579 stage IV sporulation protein A K06398 spoIVA; stage IV sporulation protein A
D TherJR_1654 stage V sporulation protein AC K06405 spoVAC; stage V sporulation protein AC
D TherJR_1653 stage V sporulation protein AD K06406 spoVAD; stage V sporulation protein AD
D TherJR_1651 stage V sporulation protein ae K06407 spoVAE; stage V sporulation protein AE
D TherJR_1652 stage V sporulation protein AE K06407 spoVAE; stage V sporulation protein AE
D TherJR_1650 GerA spore germination protein K06408 spoVAF; stage V sporulation protein AF
D TherJR_1397 dipicolinic acid synthetase, A subunit K06410 spoVFA; dipicolinate synthase subunit A
D TherJR_1398 dipicolinic acid synthetase, B subunit K06411 spoVFB; dipicolinate synthase subunit B
D TherJR_0130 SpoVG family protein K06412 spoVG; stage V sporulation protein G
D TherJR_1497 AAA ATPase central domain protein K06413 spoVK; stage V sporulation protein K
D TherJR_1990 SpoVR family protein K06415 spoVR; stage V sporulation protein R
D TherJR_1282 Stage V sporulation protein S K06416 spoVS; stage V sporulation protein S
D TherJR_1339 conserved hypothetical protein K06423 sspF; small acid-soluble spore protein F (minor alpha/beta-type SASP)
D TherJR_1170 small acid-soluble spore protein, H-type K06425 sspH; small acid-soluble spore protein H (minor)
D TherJR_0104 sporulation peptidase YabG K06436 yabG; spore coat assemly protein
D TherJR_2424 sporulation protein YqfD K06438 yqfD; similar to stage IV sporulation protein
D TherJR_2528 germination protein, Ger(x)C family K06293 gerBC; spore germination protein BC
D TherJR_2525 GerA spore germination protein K06295 gerKA; spore germination protein KA
D TherJR_2523 germination protein, Ger(x)C family K06297 gerKC; spore germination protein KC
D TherJR_2573 Lipoprotein LpqB, GerMN domain protein K06298 gerM; germination protein M
D TherJR_2290 Spore germination protein gerPA/gerPF K06299 gerPA; spore germination protein PA
D TherJR_2937 germination protein YpeB K06313 ypeB; spore germination protein
C 99993 Cell motility
C 99995 Signaling proteins
D TherJR_1823 GTP-binding protein TypA K06207 typA; GTP-binding protein
D TherJR_1851 ACT domain-containing protein K07166 K07166; ACT domain-containing protein
D TherJR_2423 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D TherJR_0755 PhoH family protein K07175 phoH2; PhoH-like ATPase
D TherJR_1992 putative serine protein kinase, PrkA K07180 prkA; serine protein kinase
D TherJR_1429 protein of unknown function DUF520 K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D TherJR_0263 biotin/lipoyl attachment domain-containing protein K01993 ABC-2.TX; HlyD family secretion protein
D TherJR_0819 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein
D TherJR_2634 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein
D TherJR_2283 CcmE/CycJ protein K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D TherJR_2281 hypothetical protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D TherJR_0617 microcompartments protein K27263 pduB; bacterial microcompartment shell protein
D TherJR_0623 microcompartments protein K27267 pduK; bacterial microcompartment shell protein
D TherJR_0043 microcompartments protein K27272 pduT; bacterial microcompartment shell protein
D TherJR_0632 microcompartments protein K27272 pduT; bacterial microcompartment shell protein
C 99994 Others
D TherJR_2126 phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein
D TherJR_1483 Integral membrane protein TerC K05794 terC; tellurite resistance protein TerC
D TherJR_0663 hemerythrin-like metal-binding protein K07216 hr; hemerythrin
D TherJR_0664 hemerythrin-like metal-binding protein K07216 hr; hemerythrin
D TherJR_0758 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
B
B 09194 Poorly characterized
C 99996 General function prediction only
D TherJR_2720 PHP domain protein K04477 ycdX; putative hydrolase
D TherJR_2722 PHP domain protein K04477 ycdX; putative hydrolase
D TherJR_1065 DEAD/DEAH box helicase domain protein K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D TherJR_1066 DEAD/DEAH box helicase domain protein K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D TherJR_2378 Patatin K07001 K07001; NTE family protein
D TherJR_1169 Haloacid dehalogenase domain protein hydrolase K07025 K07025; putative hydrolase of the HAD superfamily
D TherJR_2578 membrane-bound metal-dependent hydrolase K07038 K07038; inner membrane protein
D TherJR_2171 membrane-bound metal-dependent hydrolase K07038 K07038; inner membrane protein
D TherJR_2996 phosphoribosyltransferase K07100 K07100; putative phosphoribosyl transferase
D TherJR_1318 FxsA cytoplasmic membrane protein K07113 fxsA; UPF0716 protein FxsA
D TherJR_2430 LemA family protein K03744 lemA; LemA protein
D TherJR_1014 protein of unknown function DUF218 K03748 sanA; SanA protein
D TherJR_0476 SNARE associated Golgi protein-related protein K03975 dedA; membrane-associated protein
D TherJR_2728 membrane protein of unknown function K08972 K08972; putative membrane protein
D TherJR_2460 membrane protein of unknown function K08972 K08972; putative membrane protein
D TherJR_2287 Protein of unknown function DUF2078, membrane K08982 K08982; putative membrane protein
C 99997 Function unknown
D TherJR_2953 Radical SAM domain protein K06871 K06871; uncharacterized protein
D TherJR_2429 protein of unknown function DUF477 K06872 K06872; uncharacterized protein
D TherJR_0579 protein of unknown function DUF255 K06888 K06888; uncharacterized protein
D TherJR_2398 protein of unknown function DUF815 K06923 K06923; uncharacterized protein
D TherJR_1248 protein of unknown function DUF134 K06933 K06933; uncharacterized protein
D TherJR_1967 conserved hypothetical protein K06950 K06950; uncharacterized protein
D TherJR_0209 metal dependent phosphohydrolase K06950 K06950; uncharacterized protein
D TherJR_2049 conserved hypothetical protein K06960 K06960; uncharacterized protein
D TherJR_0274 protein of unknown function DUF901 K06962 K06962; uncharacterized protein
D TherJR_1795 peptidase membrane zinc metallopeptidase putative K06973 K06973; uncharacterized protein
D TherJR_0349 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein K07005 K07005; uncharacterized protein
D TherJR_0637 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein K07006 K07006; uncharacterized protein
D TherJR_1661 amidohydrolase 2 K07045 K07045; uncharacterized protein
D TherJR_0915 PilT protein domain protein K07063 K07063; uncharacterized protein
D TherJR_1901 aldo/keto reductase K07079 K07079; uncharacterized protein
D TherJR_2375 aldo/keto reductase K07079 K07079; uncharacterized protein
D TherJR_0458 permease K07089 K07089; uncharacterized protein
D TherJR_1329 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D TherJR_1330 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D TherJR_0845 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D TherJR_2106 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein
D TherJR_2565 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein
D TherJR_2869 metallophosphoesterase K07098 K07098; uncharacterized protein
D TherJR_0491 protein of unknown function DUF395 YeeE/YedE K07112 K07112; uncharacterized protein
D TherJR_0492 protein of unknown function DUF395 YeeE/YedE K07112 K07112; uncharacterized protein
D TherJR_0506 protein of unknown function DUF395 YeeE/YedE K07112 K07112; uncharacterized protein
D TherJR_2394 conserved hypothetical protein K07112 K07112; uncharacterized protein
D TherJR_2650 protein of unknown function DUF395 YeeE/YedE K07112 K07112; uncharacterized protein
D TherJR_0508 protein of unknown function DUF395 YeeE/YedE K07112 K07112; uncharacterized protein
D TherJR_0169 conserved hypothetical protein K07133 K07133; uncharacterized protein
D TherJR_0642 HI0933 family protein K07137 K07137; uncharacterized protein
D TherJR_0378 monooxygenase FAD-binding protein K07137 K07137; uncharacterized protein
D TherJR_1558 4Fe-4S ferredoxin iron-sulfur binding domain protein K07138 K07138; uncharacterized protein
D TherJR_2603 conserved hypothetical protein K07139 K07139; uncharacterized protein
D TherJR_1322 VWA containing CoxE family protein K07161 K07161; uncharacterized protein
D TherJR_2341 VWA containing CoxE family protein K07161 K07161; uncharacterized protein
D TherJR_2296 protein of unknown function DUF164 K07164 K07164; uncharacterized protein
D TherJR_3015 protein of unknown function DUF37 K08998 K08998; uncharacterized protein
D TherJR_2806 protein of unknown function DUF192 K09005 K09005; uncharacterized protein
D TherJR_2193 conserved hypothetical protein K09005 K09005; uncharacterized protein
D TherJR_2443 Protein of unknown function K09117 K09117; uncharacterized protein
D TherJR_0439 Domain of unknown function DUF2357 K09124 K09124; uncharacterized protein
D TherJR_1556 Protein of unknown function DUF1867 K09126 K09126; uncharacterized protein
D TherJR_1860 protein of unknown function DUF167 K09131 K09131; uncharacterized protein
D TherJR_0587 protein of unknown function DUF190 K09137 K09137; uncharacterized protein
D TherJR_1850 protein of unknown function DUF711 K09157 K09157; uncharacterized protein
D TherJR_1202 metal dependent phosphohydrolase K09163 K09163; uncharacterized protein
D TherJR_0780 metal dependent phosphohydrolase K09163 K09163; uncharacterized protein
D TherJR_1175 ApbE family lipoprotein K09740 K09740; uncharacterized protein
D TherJR_0658 protein of unknown function DUF342 K09749 K09749; uncharacterized protein
D TherJR_1511 protein of unknown function DUF342 K09749 K09749; uncharacterized protein
D TherJR_0514 protein of unknown function DUF342 K09749 K09749; uncharacterized protein
D TherJR_1855 protein of unknown function DUF342 K09749 K09749; uncharacterized protein
D TherJR_2356 protein of unknown function DUF503 K09764 K09764; uncharacterized protein
D TherJR_1932 Protein of unknown function DUF2225 K09766 K09766; uncharacterized protein
D TherJR_2304 protein of unknown function DUF188 K09768 K09768; uncharacterized protein
D TherJR_0086 protein of unknown function DUF327 K09770 K09770; uncharacterized protein
D TherJR_2225 protein of unknown function DUF458 K09776 K09776; uncharacterized protein
D TherJR_1784 protein of unknown function DUF378 K09779 K09779; uncharacterized protein
D TherJR_1991 sporulation protein YhbH K09786 K09786; uncharacterized protein
D TherJR_2052 putative helix-turn-helix protein YlxM/p13 family protein K09787 K09787; uncharacterized protein
D TherJR_1500 protein of unknown function DUF456 K09793 K09793; uncharacterized protein
D TherJR_2913 Protein of unknown function DUF2062 K09928 K09928; uncharacterized protein
D TherJR_1987 Protein of unknown function DUF2062 K09928 K09928; uncharacterized protein
D TherJR_2185 conserved hypothetical protein K09942 K09942; uncharacterized protein
D TherJR_0886 conserved hypothetical protein K09942 K09942; uncharacterized protein
D TherJR_1587 conserved hypothetical protein K05739 seaA; uncharacterized protein
D TherJR_2530 protein of unknown function DUF464 K07584 ysxB; uncharacterized protein
D TherJR_2053 Putitive phosphate transport regulator K07220 K07220; uncharacterized protein
D TherJR_1375 protein of unknown function DUF448 K07742 ylxR; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 13, 2024