+D GENES KO
#
KEGG Orthology (KO) - Treponema primitia
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:tpi00010]
D TREPR_1339 hexokinase K00844 HK; hexokinase [EC:2.7.1.1]
D TREPR_2249 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D TREPR_0608 diphosphate--fructose-6-phosphate 1-phosphotransferase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D TREPR_3551 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D TREPR_1621 diphosphate--fructose-6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
D TREPR_1085 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D TREPR_2452 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D TREPR_2454 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D TREPR_0394 glyceraldehyde-3-phosphate dehydrogenase, type II K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59]
D TREPR_0395 pgk_2; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D TREPR_2434 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D TREPR_0776 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D TREPR_0649 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D TREPR_1839 pyruvate, phosphate dikinase (Pyruvate, orthophosphatedikinase) K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D TREPR_2255 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D TREPR_3835 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D TREPR_1990 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D TREPR_3421 vorB; 2-oxoglutarate oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D TREPR_3420 2-oxoglutarate oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D TREPR_3297 aldehyde-alcohol dehydrogenase 2 K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D TREPR_0157 acyl-coenzyme A synthetase ACSM3 K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TREPR_1800 acyl-coenzyme A synthetase ACSM3 K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TREPR_2660 aldose 1-epimerase (Mutarotase) K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D TREPR_1681 putative phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D TREPR_2725 phosphohexose mutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D TREPR_3050 phosphoenolpyruvate carboxykinase (ATP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D TREPR_2952 beta-glucosidase (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) (Amygdalase) K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D TREPR_0470 beta-glucosidase (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) (Amygdalase) K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
C 00020 Citrate cycle (TCA cycle) [PATH:tpi00020]
D TREPR_2450 citrate synthase domain protein K01647 CS; citrate synthase [EC:2.3.3.1]
D TREPR_1773 aconitase family protein K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D TREPR_3317 aconitase family protein K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D TREPR_2661 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D TREPR_3835 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D TREPR_3421 vorB; 2-oxoglutarate oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D TREPR_3420 2-oxoglutarate oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D TREPR_3419 ketoisovalerate oxidoreductase subunit VorA (VOR) (2-oxoisovalerate oxidoreductase alpha chain) (2-oxoisovalerateferredoxin reductase subunit alpha) K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D TREPR_3422 conserved domain protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D TREPR_1306 ttdA; fumarate hydratase K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D TREPR_1307 fumB; fumarate hydratase, class I K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D TREPR_3050 phosphoenolpyruvate carboxykinase (ATP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D TREPR_1990 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:tpi00030]
D TREPR_2249 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D TREPR_1719 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D TREPR_1311 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D TREPR_1310 transketolase C-section K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D TREPR_0407 1-deoxy-d-xylulose-5-phosphate synthase (1-deoxyxylulose-5-phosphate synthase) (dxp synthase) (dxps) K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D TREPR_0406 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D TREPR_0335 1-deoxy-d-xylulose-5-phosphate synthase (1-deoxyxylulose-5-phosphate synthase) (dxp synthase) (dxps) K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D TREPR_0334 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D TREPR_1943 rpiB; ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D TREPR_3416 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D TREPR_1681 putative phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D TREPR_2725 phosphohexose mutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D TREPR_3654 phosphoribosylpyrophosphate synthetase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D TREPR_1722 putative ribose-Phosphate pyrophosphokinase (rppk) (phosphoribosylpyrophosphate synthetase) (p-rib-pp synthetase) (prpp synthetase) K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D TREPR_2991 khg/kdpg aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D TREPR_0588 khg/kdpg family aldolase/carbohydrate kinase, pfkb family K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D TREPR_2992 PfkB domain protein K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D TREPR_0587 khg/kdpg family aldolase/carbohydrate kinase, pfkb family K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D TREPR_1805 putative hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D TREPR_1085 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D TREPR_0608 diphosphate--fructose-6-phosphate 1-phosphotransferase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D TREPR_3551 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D TREPR_1621 diphosphate--fructose-6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:tpi00040]
D TREPR_0589 uxaC; glucuronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D TREPR_0591 uxuA; mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8]
D TREPR_0590 mannitol-1-phosphate/altronate dehydrogenase K00040 uxuB; fructuronate reductase [EC:1.1.1.57]
D TREPR_2367 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D TREPR_1719 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D TREPR_0655 sugar kinase, fggy family K24707 E2.7.1.16; ribulokinase [EC:2.7.1.16]
D TREPR_2498 xylB; xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D TREPR_3653 carhohydrate kinase, fggy family K00854 xylB; xylulokinase [EC:2.7.1.17]
D TREPR_2497 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D TREPR_0134 D-xylulose reductase (Xylitol dehydrogenase) (XDH) K05351 E1.1.1.9; D-xylulose reductase [EC:1.1.1.9]
C 00051 Fructose and mannose metabolism [PATH:tpi00051]
D TREPR_3599 fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D TREPR_1650 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D TREPR_1177 mannose-1-phosphate guanylyltransferase [GDP] (GDP-mannose pyrophosphorylase) (GMP) K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D TREPR_2387 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D TREPR_2388 fcl; GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D TREPR_1339 hexokinase K00844 HK; hexokinase [EC:2.7.1.1]
D TREPR_0608 diphosphate--fructose-6-phosphate 1-phosphotransferase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D TREPR_3551 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D TREPR_1621 diphosphate--fructose-6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
D TREPR_2963 L-sorbose 1-phosphate reductase K19956 sorE; L-sorbose 1-phosphate reductase [EC:1.1.1.-]
D TREPR_2964 pfkB; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D TREPR_2497 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D TREPR_1085 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D TREPR_2452 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D TREPR_1943 rpiB; ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D TREPR_0489 PTS system, IIA component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D TREPR_2965 pts system mannitol-specific eiicba component K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197]
D TREPR_2968 pts system mannitol-specific eiicba component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
C 00052 Galactose metabolism [PATH:tpi00052]
D TREPR_2660 aldose 1-epimerase (Mutarotase) K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D TREPR_0040 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D TREPR_2801 putative galactokinase (Galactose kinase) K00849 galK; galactokinase [EC:2.7.1.6]
D TREPR_3739 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D TREPR_0560 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D TREPR_0333 putative NAD-binding domain 4 protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D TREPR_1681 putative phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D TREPR_2725 phosphohexose mutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D TREPR_1339 hexokinase K00844 HK; hexokinase [EC:2.7.1.1]
D TREPR_2533 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D TREPR_1966 alpha galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D TREPR_0608 diphosphate--fructose-6-phosphate 1-phosphotransferase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D TREPR_3551 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D TREPR_2985 DgoA protein K01684 dgoD; galactonate dehydratase [EC:4.2.1.6]
C 00053 Ascorbate and aldarate metabolism [PATH:tpi00053]
D TREPR_2367 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D TREPR_2368 UDP-glucuronate 5'-epimerase (UDP-glucuronic acidepimerase) K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
C 00500 Starch and sucrose metabolism [PATH:tpi00500]
D TREPR_1329 periplasmic beta-glucosidase/beta-xylosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D TREPR_1605 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D TREPR_1611 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D TREPR_0466 lichenan-specific phosphotransferase enzyme iia component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D TREPR_0467 lichenan-specific phosphotransferase enzyme iib component (pts system lichenan-specific eiib component) (eiib-lic) K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D TREPR_0468 PTS system, IIc component K02761 celB; cellobiose PTS system EIIC component
D TREPR_2952 beta-glucosidase (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) (Amygdalase) K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D TREPR_0470 beta-glucosidase (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) (Amygdalase) K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D TREPR_2373 rfbF; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D TREPR_1833 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D TREPR_2124 glycogen synthase (Starch [bacterial glycogen]synthase) K00703 glgA; starch synthase [EC:2.4.1.21]
D TREPR_1577 glycoside hydrolase, family 57 K16149 K16149; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D TREPR_2775 malP; maltodextrin phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D TREPR_3704 possible maltodextrin glucosidase K01208 cd; cyclomaltodextrinase / maltogenic alpha-amylase / neopullulanase [EC:3.2.1.54 3.2.1.133 3.2.1.135]
D TREPR_0240 4-alpha-glucanotransferase (Amylomaltase)(Disproportionating enzyme) (D-enzyme) K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D TREPR_0223 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D TREPR_1751 alpha-amylase K22451 jgt; 4-alpha-glucanotransferase [EC:2.4.1.25]
D TREPR_0838 glgX; glycogen debranching enzyme GlgX K01214 ISA; isoamylase [EC:3.2.1.68]
D TREPR_1681 putative phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D TREPR_2725 phosphohexose mutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D TREPR_1339 hexokinase K00844 HK; hexokinase [EC:2.7.1.1]
D TREPR_2249 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D TREPR_3599 fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:tpi00520]
D TREPR_3874 glycosyl hydrolase, family 3 K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D TREPR_1170 beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D TREPR_1600 cellobiose phosphorylase K18675 chbP; N,N'-diacetylchitobiose phosphorylase [EC:2.4.1.280]
D TREPR_3359 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D TREPR_3358 nagB; glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D TREPR_1339 hexokinase K00844 HK; hexokinase [EC:2.7.1.1]
D TREPR_3599 fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D TREPR_1116 glmS; glutamine-fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D TREPR_0072 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D TREPR_1995 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D TREPR_0344 VI polysaccharide biosynthesis protein VipB/tviC K02473 wbpP; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine 4-epimerase [EC:5.1.3.7 5.1.3.-]
D TREPR_0345 VI polysaccharide biosynthesis protein VipA/tviB K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D TREPR_0210 UDP-glucuronic acid decarboxylase 1 (UDP-glucuronatedecarboxylase 1) (UXS-1) K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35]
D TREPR_2386 UDP-glucuronic acid decarboxylase 1 (UDP-glucuronatedecarboxylase 1) (UGD) (UXS-1) K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35]
D TREPR_1328 beta-1,4-xylosidase with transcriptional regulator of AraC/XylS family K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37]
D TREPR_1681 putative phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D TREPR_2725 phosphohexose mutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D TREPR_2367 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D TREPR_0040 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D TREPR_2801 putative galactokinase (Galactose kinase) K00849 galK; galactokinase [EC:2.7.1.6]
D TREPR_3739 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D TREPR_0560 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D TREPR_0333 putative NAD-binding domain 4 protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D TREPR_2533 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D TREPR_2368 UDP-glucuronate 5'-epimerase (UDP-glucuronic acidepimerase) K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D TREPR_2249 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D TREPR_1650 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D TREPR_1177 mannose-1-phosphate guanylyltransferase [GDP] (GDP-mannose pyrophosphorylase) (GMP) K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D TREPR_2387 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D TREPR_2388 fcl; GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D TREPR_2373 rfbF; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D TREPR_2374 rfbG; CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D TREPR_2375 DegT/DnrJ/EryC1/StrS aminotransferase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D TREPR_1833 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:tpi00620]
D TREPR_0157 acyl-coenzyme A synthetase ACSM3 K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TREPR_1800 acyl-coenzyme A synthetase ACSM3 K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TREPR_1990 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D TREPR_3421 vorB; 2-oxoglutarate oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D TREPR_3420 2-oxoglutarate oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D TREPR_3835 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D TREPR_3297 aldehyde-alcohol dehydrogenase 2 K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D TREPR_1323 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]
D TREPR_1176 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D TREPR_1841 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D TREPR_0649 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D TREPR_1268 accA_1; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D TREPR_0988 accA_2; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D TREPR_1271 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D TREPR_1270 biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC) K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D TREPR_1269 accD_1; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D TREPR_0989 accD_2; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D TREPR_0734 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D TREPR_3562 hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D TREPR_2238 hydroxyacylglutathione hydrolase (Glyoxalase II) (GlxII) K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D TREPR_0391 general glycosylation pathway protein K22373 larA; lactate racemase [EC:5.1.2.1]
D TREPR_0393 malate dehydrogenase (oxaloacetate-decarboxylating) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D TREPR_1676 oadA; oxaloacetate decarboxylase alpha subunit K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D TREPR_1675 oxaloacetate decarboxylase, subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D TREPR_1677 sodium pump decarboxylase, gamma subunit K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma
D TREPR_1306 ttdA; fumarate hydratase K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D TREPR_1307 fumB; fumarate hydratase, class I K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D TREPR_3050 phosphoenolpyruvate carboxykinase (ATP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D TREPR_1839 pyruvate, phosphate dikinase (Pyruvate, orthophosphatedikinase) K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D TREPR_2255 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D TREPR_0981 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D TREPR_0980 2-isopropylmalate synthase/homocitrate synthase family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D TREPR_2880 2-isopropylmalate synthase (Alpha-isopropylmalatesynthase) (Alpha-IPM synthetase) K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:tpi00630]
D TREPR_0157 acyl-coenzyme A synthetase ACSM3 K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TREPR_1800 acyl-coenzyme A synthetase ACSM3 K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TREPR_2450 citrate synthase domain protein K01647 CS; citrate synthase [EC:2.3.3.1]
D TREPR_1773 aconitase family protein K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D TREPR_3317 aconitase family protein K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D TREPR_1303 methylaspartate mutase, E subunit K19268 glmE; methylaspartate mutase epsilon subunit [EC:5.4.99.1]
D TREPR_1301 mamA; methylaspartate mutase, S subunit K01846 glmS; methylaspartate mutase sigma subunit [EC:5.4.99.1]
D TREPR_1304 methylaspartate ammonia-lyase K04835 mal; methylaspartate ammonia-lyase [EC:4.3.1.2]
D TREPR_3652 HAD-superfamily hydrolase, subfamily IA, variant 1 K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D TREPR_0801 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D TREPR_0336 pyrophosphatase PpaX K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D TREPR_1028 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D TREPR_3525 glutamine synthetase (Glutamate--ammonia ligase) (GS) K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D TREPR_3838 glycine dehydrogenase (decarboxylating) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D TREPR_3837 glycine dehydrogenase (decarboxylating) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D TREPR_3840 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D TREPR_3835 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D TREPR_3839 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D TREPR_1309 2-hydroxy-3-oxopropionate reductase K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60]
D TREPR_1805 putative hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D TREPR_2991 khg/kdpg aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D TREPR_0588 khg/kdpg family aldolase/carbohydrate kinase, pfkb family K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
C 00640 Propanoate metabolism [PATH:tpi00640]
D TREPR_0157 acyl-coenzyme A synthetase ACSM3 K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TREPR_1800 acyl-coenzyme A synthetase ACSM3 K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TREPR_1176 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D TREPR_1841 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D TREPR_3835 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D TREPR_1268 accA_1; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D TREPR_0988 accA_2; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D TREPR_1271 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D TREPR_1270 biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC) K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D TREPR_1269 accD_1; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D TREPR_0989 accD_2; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D TREPR_0423 adenosylmethionine--8-amino-7-oxononanoate transaminase K25571 pydD; beta-alanine---2-oxoglutarate transaminase [EC:2.6.1.120]
D TREPR_3023 oxidoreductase, aldo/keto reductase family K18471 ydjG; methylglyoxal reductase [EC:1.1.1.-]
C 00650 Butanoate metabolism [PATH:tpi00650]
D TREPR_3297 aldehyde-alcohol dehydrogenase 2 K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D TREPR_1323 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]
D TREPR_1675 oxaloacetate decarboxylase, subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D TREPR_1990 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D TREPR_3421 vorB; 2-oxoglutarate oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D TREPR_3420 2-oxoglutarate oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D TREPR_0976 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D TREPR_0983 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D TREPR_3602 L-threonine 3-dehydrogenase K00004 BDH; (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.4 1.1.1.- 1.1.1.303]
C 00660 C5-Branched dibasic acid metabolism [PATH:tpi00660]
D TREPR_0976 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D TREPR_0983 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D TREPR_1304 methylaspartate ammonia-lyase K04835 mal; methylaspartate ammonia-lyase [EC:4.3.1.2]
D TREPR_1303 methylaspartate mutase, E subunit K19268 glmE; methylaspartate mutase epsilon subunit [EC:5.4.99.1]
D TREPR_1301 mamA; methylaspartate mutase, S subunit K01846 glmS; methylaspartate mutase sigma subunit [EC:5.4.99.1]
D TREPR_1637 3-isopropylmalate dehydratase large subunit 1 (isopropylmalate isomerase 1) (alpha-ipm isomerase 1) (ipmi 1) K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D TREPR_1635 3-isopropylmalate dehydratase small subunit 2 (isopropylmalate isomerase 2) (alpha-ipm isomerase 2) (ipmi 2) K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D TREPR_0979 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:tpi00562]
D TREPR_0660 inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D TREPR_0408 inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D TREPR_0399 inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D TREPR_0400 xylose isomerase domain protein TIM barrel K06606 iolI; 2-keto-myo-inositol isomerase [EC:5.3.99.11]
D TREPR_0396 Myo-inositol catabolism protein IolE K03335 iolE; inosose dehydratase [EC:4.2.1.44]
D TREPR_0397 probable malonic semialdehyde oxidative decarboxylase K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22]
D TREPR_0398 myo-inositol catabolism protein K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30]
D TREPR_2452 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:tpi00190]
D TREPR_3596 NADH dehydrogenase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D TREPR_3302 Fe-hydrogenase gamma subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D TREPR_3286 Fe-hydrogenase gamma subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D TREPR_3287 NADH dehydrogenase K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D TREPR_3301 NAD-dependent formate dehydrogenase beta subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D TREPR_3594 iron hydrogenase 1 ([Fe] hydrogenase) (Fe-onlyhydrogenase) (CpI) K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D TREPR_3300 hydrogen dehydrogenase K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D TREPR_3288 hydrogenase-1 K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D TREPR_1234 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D TREPR_1236 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D TREPR_1235 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D TREPR_1233 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D TREPR_1237 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D TREPR_1230 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D TREPR_1232 F0F1-type ATP synthase b subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D TREPR_1231 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D TREPR_1152 V-type sodium ATP synthase, A subunit K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D TREPR_2656 V-type sodium ATP synthase, A subunit K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D TREPR_1153 V-type sodium ATP synthase, B subunit K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D TREPR_2655 V-type sodium ATP synthase, B subunit K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D TREPR_1215 V-type ATPase, D subunit K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D
D TREPR_2654 V-type ATPase, D subunit K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D
D TREPR_2658 V-type ATP synthase subunit E (V-type ATPase subunit E) K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E
D TREPR_1148 V-type ATP synthase subunit I 2 (V-type ATPase subunit I2) K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I
D TREPR_2653 V-type ATP synthase subunit I 1 (V-type ATPase subunit I1) K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I
D TREPR_1149 H-ATPase-like protein K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K
D TREPR_2652 ATP synthase subunit K K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K
D TREPR_1965 manganese-dependent inorganic pyrophosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1]
D TREPR_0669 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:tpi00680]
D TREPR_3099 fdhA; formate dehydrogenase, alpha subunit K22015 fdhF; formate dehydrogenase (hydrogenase) [EC:1.17.98.4 1.17.98.-]
D TREPR_3094 iron hydrogenase 1 ([Fe] hydrogenase) (Fe-onlyhydrogenase) (CpI) K25123 hydA2; iron hydrogenase HydA2 [EC:1.12.7.-]
D TREPR_3098 protein AegA K25124 hycB; FeS-containing electron transfer protein
D TREPR_3095 protein AegA K25124 hycB; FeS-containing electron transfer protein
D TREPR_3065 acetyl-coa decarbonylase/synthase complex subunit gamma (acds complex subunit gamma) (acds complex methyltransferase)(corrinoid/iron-sulfur component large subunit) K00197 cdhE; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit gamma [EC:2.1.1.245]
D TREPR_3066 CO dehydrogenase/acetyl-CoA synthase delta subunit K00194 cdhD; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit delta [EC:2.1.1.245]
D TREPR_3069 cooS; carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D TREPR_1805 putative hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D TREPR_0776 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D TREPR_1085 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D TREPR_0608 diphosphate--fructose-6-phosphate 1-phosphotransferase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D TREPR_3551 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D TREPR_3274 FwdE family protein K11261 fwdE; formylmethanofuran dehydrogenase subunit E [EC:1.2.7.12]
D TREPR_1176 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D TREPR_1841 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D TREPR_0157 acyl-coenzyme A synthetase ACSM3 K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TREPR_1800 acyl-coenzyme A synthetase ACSM3 K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TREPR_2434 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D TREPR_3802 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D TREPR_1968 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D TREPR_3803 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D TREPR_3042 thrH; phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39]
D TREPR_0755 dimethylamine corrinoid protein K16179 mtbC; dimethylamine corrinoid protein
D TREPR_3329 malate dehydrogenase K05884 comC; L-2-hydroxycarboxylate dehydrogenase (NAD+) [EC:1.1.1.337]
C 00910 Nitrogen metabolism [PATH:tpi00910]
D TREPR_2887 nifD; nitrogenase molybdenum-iron protein alpha chain K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1]
D TREPR_0246 oxidoreductase/nitrogenase, component 1 K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]
D TREPR_2886 nifK; nitrogenase molybdenum-iron protein beta chain K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]
D TREPR_0248 nitrogenase iron protein 1 (Nitrogenase component II)(Nitrogenase Fe protein 1) (Nitrogenase reductase) K02588 nifH; nitrogenase iron protein NifH
D TREPR_3541 nifH_1; nitrogenase iron protein K02588 nifH; nitrogenase iron protein NifH
D TREPR_2890 nifH_2; nitrogenase iron protein K02588 nifH; nitrogenase iron protein NifH
D TREPR_0541 nitrogen fixation protein NifH/NifE K02588 nifH; nitrogenase iron protein NifH
D TREPR_3465 hcp; hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D TREPR_3525 glutamine synthetase (Glutamate--ammonia ligase) (GS) K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D TREPR_3466 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D TREPR_3467 glutamate synthase [NADH] (nadh-gogat) K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
C 00920 Sulfur metabolism [PATH:tpi00920]
D TREPR_0255 sulfate-binding protein (Sulfate starvation-induced protein2) (SSI2) K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D TREPR_0254 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D TREPR_0253 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D TREPR_0252 sulfate/thiosulfate import ATP-binding protein CysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D TREPR_0249 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D TREPR_0250 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D TREPR_3811 DHH superfamily protein, subfamily 1 K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D TREPR_1836 DHH family protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D TREPR_0251 adenosine 5'-phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D TREPR_1701 asrA; sulfite reductase, subunit A K16950 asrA; anaerobic sulfite reductase subunit A
D TREPR_1702 asrB; sulfite reductase, subunit B K16951 asrB; anaerobic sulfite reductase subunit B
D TREPR_1703 asrC; sulfite reductase, subunit C K00385 asrC; anaerobic sulfite reductase subunit C
D TREPR_0243 nitrite/sulfite reductase, 4Fe-4S iron-sulfur cluster-binding domain protein K00385 asrC; anaerobic sulfite reductase subunit C
D TREPR_3600 serine acetyltransferase, plasmid (SAT) K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D TREPR_3719 serine acetyltransferase, plasmid K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D TREPR_3753 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D TREPR_0373 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D TREPR_0630 cystathionine gamma-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:tpi00061]
D TREPR_1268 accA_1; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D TREPR_0988 accA_2; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D TREPR_1271 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D TREPR_1270 biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC) K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D TREPR_1269 accD_1; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D TREPR_0989 accD_2; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D TREPR_2690 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D TREPR_1279 malonyl CoA-acyl carrier protein transacylase (MCT) K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D TREPR_1280 beta-ketoacyl-acyl-carrier-protein synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D TREPR_1277 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D TREPR_1278 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D TREPR_1276 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D TREPR_0175 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D TREPR_1173 long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D TREPR_0987 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:tpi00071]
D TREPR_0175 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D TREPR_1173 long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D TREPR_0987 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D TREPR_3297 aldehyde-alcohol dehydrogenase 2 K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:tpi00561]
D TREPR_1805 putative hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D TREPR_3330 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D TREPR_1913 probable 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D TREPR_1966 alpha galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00564 Glycerophospholipid metabolism [PATH:tpi00564]
D TREPR_0614 glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D TREPR_1913 probable 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D TREPR_0088 putative phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D TREPR_3325 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D TREPR_2674 cdsA_2; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D TREPR_0106 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D TREPR_3876 cardiolipin synthetase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism [PATH:tpi00600]
D TREPR_1966 alpha galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:tpi00230]
D TREPR_0601 MutT/NUDIX family protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D TREPR_1681 putative phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D TREPR_2725 phosphohexose mutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D TREPR_3654 phosphoribosylpyrophosphate synthetase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D TREPR_1722 putative ribose-Phosphate pyrophosphokinase (rppk) (phosphoribosylpyrophosphate synthetase) (p-rib-pp synthetase) (prpp synthetase) K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D TREPR_3786 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D TREPR_3774 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D TREPR_3780 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D TREPR_1070 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D TREPR_3782 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D TREPR_3788 purE; phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D TREPR_3787 purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D TREPR_0227 putative adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D TREPR_3778 bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D TREPR_3432 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D TREPR_3569 putative 5'-Nucleotidase domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D TREPR_1357 protein UshA K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D TREPR_2839 UshA protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D TREPR_2953 putative 5'-Nucleotidase domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D TREPR_2800 5'-nucleotidase SurE (Nucleoside 5'-monophosphatephosphohydrolase) K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D TREPR_0918 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D TREPR_0680 phosphorylase family protein K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D TREPR_3442 conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D TREPR_0226 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D TREPR_0612 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D TREPR_1619 rdgB; non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D TREPR_0218 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D TREPR_3178 vitamin B12-dependent ribonucleotide reductase (Ribonucleoside-diphosphate reductase NrdJ) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D TREPR_0510 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D TREPR_1504 GTP diphosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D TREPR_0668 putative exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D TREPR_3305 RelA/SpoT domain protein K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]
D TREPR_2457 RelA/SpoT domain protein K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]
D TREPR_3591 adenylate/guanylate cyclase catalytic domain protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D TREPR_2435 adenylate/guanylate cyclase catalytic domain protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D TREPR_1261 adenylate/guanylate cyclase catalytic domain protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D TREPR_1257 putative adenylate cyclase 2 (ATP pyrophosphate-lyase 2) (Adenylylcyclase 2) (AC2) K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D TREPR_1654 putative adenylate cyclase 2 (ATP pyrophosphate-lyase 2) (Adenylylcyclase 2) (AC2) K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D TREPR_2067 adenylyl cyclase class-3/4/guanylyl cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D TREPR_3411 adenylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D TREPR_0298 adenylate/guanylate cyclase catalytic domain protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D TREPR_2471 adenylate cyclase K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1]
D TREPR_0219 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D TREPR_1742 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D TREPR_3039 metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D TREPR_0854 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D TREPR_0249 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D TREPR_0250 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
C 00240 Pyrimidine metabolism [PATH:tpi00240]
D TREPR_1775 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D TREPR_3502 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D TREPR_3501 aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D TREPR_3500 dihydroorotase (DHOase) K01465 URA4; dihydroorotase [EC:3.5.2.3]
D TREPR_3498 dihydroorotate dehydrogenase, catalytic subunit (dihydroorotate oxidase) (dhodehase) (dhodase) (dhod) K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D TREPR_3499 dihydroorotate dehydrogenase, electron transfer subunit K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit
D TREPR_1421 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D TREPR_3494 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D TREPR_1622 putative uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D TREPR_0612 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D TREPR_2669 maf; septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D TREPR_3014 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D TREPR_2412 putative cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D TREPR_3490 phosphoribulokinase/uridine kinase family protein K00876 udk; uridine kinase [EC:2.7.1.48]
D TREPR_3569 putative 5'-Nucleotidase domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D TREPR_1357 protein UshA K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D TREPR_2839 UshA protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D TREPR_2953 putative 5'-Nucleotidase domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D TREPR_2800 5'-nucleotidase SurE (Nucleoside 5'-monophosphatephosphohydrolase) K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D TREPR_2647 putative uracil phosphoribosyltransferase (umppyrophosphorylase) (uprtase) K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D TREPR_1742 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D TREPR_3039 metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D TREPR_3756 indigoidine synthase A family protein K16329 psuG; pseudouridylate synthase [EC:4.2.1.70]
D TREPR_1002 pyrimidine-nucleoside phosphorylase K00756 pdp; pyrimidine-nucleoside phosphorylase [EC:2.4.2.2]
D TREPR_1802 cdd; cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D TREPR_0510 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D TREPR_3178 vitamin B12-dependent ribonucleotide reductase (Ribonucleoside-diphosphate reductase NrdJ) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D TREPR_2477 CMP/dCMP deaminase, zinc-binding protein K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D TREPR_2634 tmk; dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D TREPR_1762 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D TREPR_3849 thyX; thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D TREPR_0425 dihydroorotate oxidase K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1]
D TREPR_0426 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D TREPR_0424 N-carbamyl-L-cysteine amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:tpi00250]
D TREPR_2697 aspartate aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D TREPR_0340 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D TREPR_0993 aminotransferase, class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D TREPR_3565 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D TREPR_3673 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D TREPR_3350 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D TREPR_3357 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D TREPR_0219 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D TREPR_0227 putative adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D TREPR_3502 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D TREPR_3501 aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D TREPR_3466 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D TREPR_3467 glutamate synthase [NADH] (nadh-gogat) K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D TREPR_3525 glutamine synthetase (Glutamate--ammonia ligase) (GS) K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D TREPR_1775 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D TREPR_1116 glmS; glutamine-fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D TREPR_3786 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:tpi00260]
D TREPR_2974 lysine-sensitive aspartokinase 3 (Lysine-sensitiveaspartokinase III) (Aspartate kinase III) K00928 lysC; aspartate kinase [EC:2.7.2.4]
D TREPR_2791 bifunctional aspartokinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D TREPR_2977 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D TREPR_3042 thrH; phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39]
D TREPR_0264 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D TREPR_0256 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D TREPR_0421 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D TREPR_1108 L-allo-threonine aldolase (L-allo-TA) (L-allo-threonineacetaldehyde-lyase) K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D TREPR_1805 putative hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D TREPR_2434 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D TREPR_3802 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D TREPR_1968 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D TREPR_3803 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D TREPR_3838 glycine dehydrogenase (decarboxylating) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D TREPR_3837 glycine dehydrogenase (decarboxylating) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D TREPR_3840 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D TREPR_3835 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D TREPR_3839 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D TREPR_1352 hypothetical protein K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D TREPR_0461 dsdA; D-serine ammonia-lyase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18]
D TREPR_0388 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D TREPR_0387 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D TREPR_0456 conserved hypothetical protein K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:tpi00270]
D TREPR_3600 serine acetyltransferase, plasmid (SAT) K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D TREPR_3719 serine acetyltransferase, plasmid K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D TREPR_3753 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D TREPR_0836 cystathionine gamma-synthase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D TREPR_0629 cystathionine gamma-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D TREPR_0120 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D TREPR_1033 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D TREPR_3166 mtnN; MTA/SAH nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D TREPR_0033 mtnP; methylthioadenosine phosphorylase K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28]
D TREPR_3442 conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D TREPR_0721 putative 5-methylthioadenosine/S-adenosylhomocysteine deaminase (MTA/SAH deaminase) K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D TREPR_0035 mtnA; S-methyl-5-thioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D TREPR_3176 luxS; S-ribosylhomocysteinase LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D TREPR_2974 lysine-sensitive aspartokinase 3 (Lysine-sensitiveaspartokinase III) (Aspartate kinase III) K00928 lysC; aspartate kinase [EC:2.7.2.4]
D TREPR_2791 bifunctional aspartokinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D TREPR_2977 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D TREPR_0373 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D TREPR_0630 cystathionine gamma-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D TREPR_0229 O-acetylhomoserine (thiol)-lyase (O-acetylhomoserinesulfhydrylase) (OAH sulfhydrylase) (Homocysteine synthase) K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D TREPR_3389 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D TREPR_2697 aspartate aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D TREPR_1352 hypothetical protein K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D TREPR_3713 cysteine synthase B (O-acetylserine sulfhydrylase B) (O-acetylserine (Thiol)-lyase B) (CSase B) K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D TREPR_3802 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D TREPR_1968 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D TREPR_3803 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:tpi00280]
D TREPR_3389 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D TREPR_3835 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:tpi00290]
D TREPR_1637 3-isopropylmalate dehydratase large subunit 1 (isopropylmalate isomerase 1) (alpha-ipm isomerase 1) (ipmi 1) K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D TREPR_1635 3-isopropylmalate dehydratase small subunit 2 (isopropylmalate isomerase 2) (alpha-ipm isomerase 2) (ipmi 2) K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D TREPR_0979 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D TREPR_0976 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D TREPR_0983 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D TREPR_0982 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D TREPR_0977 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D TREPR_1606 dihydroxy-acid dehydratase (DAD) K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D TREPR_3389 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D TREPR_0993 aminotransferase, class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D TREPR_0981 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D TREPR_0980 2-isopropylmalate synthase/homocitrate synthase family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D TREPR_2880 2-isopropylmalate synthase (Alpha-isopropylmalatesynthase) (Alpha-IPM synthetase) K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:tpi00300]
D TREPR_2974 lysine-sensitive aspartokinase 3 (Lysine-sensitiveaspartokinase III) (Aspartate kinase III) K00928 lysC; aspartate kinase [EC:2.7.2.4]
D TREPR_2791 bifunctional aspartokinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D TREPR_2977 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D TREPR_2976 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D TREPR_2975 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D TREPR_3334 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D TREPR_3022 Xaa-His dipeptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D TREPR_0561 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D TREPR_1185 LL-diaminopimelate aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D TREPR_1186 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D TREPR_1063 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D TREPR_0368 UDP-N-acetylmuramyl pentapeptide synthase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:tpi00310]
D TREPR_3835 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D TREPR_0566 L-lysine 2,3-aminomutase (KAM) (LAM) K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2]
D TREPR_1364 dihydrodipicolinate reductase K21672 ord; 2,4-diaminopentanoate dehydrogenase [EC:1.4.1.12 1.4.1.26]
C 00220 Arginine biosynthesis [PATH:tpi00220]
D TREPR_1366 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D TREPR_3350 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D TREPR_3357 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D TREPR_3525 glutamine synthetase (Glutamate--ammonia ligase) (GS) K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D TREPR_2697 aspartate aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D TREPR_0993 aminotransferase, class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D TREPR_3773 argA; amino-acid N-acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D TREPR_1830 acetyltransferase, GNAT family K22477 argO; N-acetylglutamate synthase [EC:2.3.1.1]
D TREPR_3333 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D TREPR_3332 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D TREPR_3334 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:tpi00330]
D TREPR_0719 putative creatininase K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10]
D TREPR_0708 creatininase K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10]
D TREPR_3147 decarboxylase, pyridoxal-dependent family K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D TREPR_0155 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D TREPR_0149 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D TREPR_0148 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D TREPR_2697 aspartate aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D TREPR_1364 dihydrodipicolinate reductase K21672 ord; 2,4-diaminopentanoate dehydrogenase [EC:1.4.1.12 1.4.1.26]
C 00340 Histidine metabolism [PATH:tpi00340]
D TREPR_3210 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D TREPR_3208 hisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D TREPR_3207 hisF; imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D TREPR_3209 hisB; imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D TREPR_3205 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D TREPR_2767 histidinol phosphate phosphatase, HisJ K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
D TREPR_3204 histidinol dehydrogenase (HDH) K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
C 00350 Tyrosine metabolism [PATH:tpi00350]
D TREPR_2697 aspartate aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D TREPR_3205 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D TREPR_3297 aldehyde-alcohol dehydrogenase 2 K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D TREPR_0289 2-dehydro-3-deoxyglucarate aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]
C 00360 Phenylalanine metabolism [PATH:tpi00360]
D TREPR_2126 phenylacetate-coenzyme A ligase (Phenylacetyl-CoAligase) (PA-CoA ligase) K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D TREPR_2697 aspartate aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D TREPR_3205 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D TREPR_1322 2-keto-4-pentenoate hydratase (2-hydroxypentadienoic acidhydratase) K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
D TREPR_1324 dmpG; 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
D TREPR_1323 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]
C 00380 Tryptophan metabolism
D TREPR_3835 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:tpi00400]
D TREPR_3226 aroF; 3-deoxy-7-phosphoheptulonate synthase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D TREPR_0966 3-deoxy-7-phosphoheptulonate synthase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D TREPR_2362 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D TREPR_1798 putative 3-dehydroquinate dehydratase, type 1/shikimate 5-dehydrogenase K13832 aroDE; 3-dehydroquinate dehydratase / shikimate dehydrogenase [EC:4.2.1.10 1.1.1.25]
D TREPR_0117 aroK; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D TREPR_3254 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D TREPR_0640 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D TREPR_0382 anthranilate synthase component 1 (Anthranilate synthasecomponent I) K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D TREPR_0383 para-aminobenzoate/anthranilate synthase glutamine amidotransferasecomponent II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D TREPR_0384 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D TREPR_0385 trpC; indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D TREPR_0388 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D TREPR_0387 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D TREPR_0456 conserved hypothetical protein K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D TREPR_2418 aroH; chorismate mutase K06208 aroH; chorismate mutase [EC:5.4.99.5]
D TREPR_3227 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D TREPR_2697 aspartate aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D TREPR_3205 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:tpi00410]
D TREPR_0423 adenosylmethionine--8-amino-7-oxononanoate transaminase K25571 pydD; beta-alanine---2-oxoglutarate transaminase [EC:2.6.1.120]
D TREPR_0425 dihydroorotate oxidase K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1]
D TREPR_0426 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D TREPR_0424 N-carbamyl-L-cysteine amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
C 00430 Taurine and hypotaurine metabolism [PATH:tpi00430]
D TREPR_3565 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D TREPR_1841 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D TREPR_1176 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism [PATH:tpi00440]
D TREPR_2364 phosphoenolpyruvate mutase K23999 fom1; phosphoenolpyruvate phosphomutase / 2-hydroxyethylphosphonate cytidylyltransferase [EC:5.4.2.9 2.7.7.104]
D TREPR_2365 aepY; phosphonopyruvate decarboxylase K09459 E4.1.1.82; phosphonopyruvate decarboxylase [EC:4.1.1.82]
D TREPR_2366 nucleotidyl transferase/aminotransferase, class V K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]
D TREPR_1340 lipB; lipoate-protein ligase B K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C 00450 Selenocompound metabolism [PATH:tpi00450]
D TREPR_0630 cystathionine gamma-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D TREPR_0836 cystathionine gamma-synthase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D TREPR_0629 cystathionine gamma-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D TREPR_0120 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D TREPR_3718 probable cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D TREPR_3858 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D TREPR_0249 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D TREPR_0250 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D TREPR_3080 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D TREPR_3084 selA; L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D TREPR_1795 methionyl-tRNA synthetase (Methionine--tRNA ligase)(MetRS) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:tpi00460]
D TREPR_1329 periplasmic beta-glucosidase/beta-xylosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D TREPR_1605 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D TREPR_1611 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00470 D-Amino acid metabolism [PATH:tpi00470]
D TREPR_1685 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D TREPR_0367 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D TREPR_2242 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D TREPR_1066 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D TREPR_1372 mandelate racemase/muconate lactonizing enzyme family protein K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25]
D TREPR_0461 dsdA; D-serine ammonia-lyase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18]
D TREPR_1186 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D TREPR_1364 dihydrodipicolinate reductase K21672 ord; 2,4-diaminopentanoate dehydrogenase [EC:1.4.1.12 1.4.1.26]
D TREPR_1365 alanine racemase, N-domain protein K21898 orr; ornithine racemase [EC:5.1.1.12]
D TREPR_1360 D-ornithine aminomutase E component K17898 oraE; D-ornithine 4,5-aminomutase subunit beta [EC:5.4.3.5]
D TREPR_1361 D-ornithine aminomutase S component K17899 oraS; D-ornithine 4,5-aminomutase subunit alpha [EC:5.4.3.5]
D TREPR_0956 conserved hypothetical protein K01780 cntK; histidine racemase [EC:5.1.1.24]
C 00480 Glutathione metabolism [PATH:tpi00480]
D TREPR_2661 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D TREPR_3303 peroxiredoxin Hyr1 K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D TREPR_3147 decarboxylase, pyridoxal-dependent family K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
D TREPR_1604 beta-mannosidase K01192 E3.2.1.25; beta-mannosidase [EC:3.2.1.25]
C 00540 Lipopolysaccharide biosynthesis [PATH:tpi00540]
D TREPR_2397 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D TREPR_2396 D-glycero-D-manno-heptose 7-phosphate kinase K07031 hddA; D-glycero-alpha-D-manno-heptose-7-phosphate kinase [EC:2.7.1.168]
C 00542 O-Antigen repeat unit biosynthesis [PATH:tpi00542]
D TREPR_2792 putative undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:tpi00541]
D TREPR_3739 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D TREPR_0560 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D TREPR_0333 putative NAD-binding domain 4 protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D TREPR_2533 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D TREPR_2367 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D TREPR_2368 UDP-glucuronate 5'-epimerase (UDP-glucuronic acidepimerase) K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D TREPR_2382 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D TREPR_2385 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D TREPR_2383 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D TREPR_2376 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D TREPR_0202 dtdp-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D TREPR_2384 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D TREPR_2373 rfbF; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D TREPR_2374 rfbG; CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D TREPR_2375 DegT/DnrJ/EryC1/StrS aminotransferase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D TREPR_1650 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D TREPR_1177 mannose-1-phosphate guanylyltransferase [GDP] (GDP-mannose pyrophosphorylase) (GMP) K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D TREPR_2387 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D TREPR_2388 fcl; GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D TREPR_0345 VI polysaccharide biosynthesis protein VipA/tviB K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D TREPR_0344 VI polysaccharide biosynthesis protein VipB/tviC K02473 wbpP; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine 4-epimerase [EC:5.1.3.7 5.1.3.-]
C 00550 Peptidoglycan biosynthesis [PATH:tpi00550]
D TREPR_0072 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D TREPR_1995 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D TREPR_2414 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D TREPR_1066 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D TREPR_1063 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D TREPR_0367 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D TREPR_0368 UDP-N-acetylmuramyl pentapeptide synthase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D TREPR_2673 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D TREPR_0314 undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D TREPR_2573 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D TREPR_2221 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D TREPR_1583 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D TREPR_2523 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D TREPR_2328 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D TREPR_2209 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D TREPR_2214 serine-type D-Ala-D-Ala carboxypeptidase DacC K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D TREPR_1572 carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 00552 Teichoic acid biosynthesis [PATH:tpi00552]
D TREPR_0314 undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D TREPR_2792 putative undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D TREPR_0063 glycosyltransferase, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
D TREPR_3453 conserved hypothetical protein K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:tpi00543]
D TREPR_2792 putative undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D TREPR_0003 probable poly(beta-D-mannuronate) O-acetylase (Alginatebiosynthesis protein AlgI) K19294 algI; alginate O-acetyltransferase complex protein AlgI
D TREPR_0357 membrane bOund o-acyl transferase, mboat K19294 algI; alginate O-acetyltransferase complex protein AlgI
D TREPR_3600 serine acetyltransferase, plasmid (SAT) K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D TREPR_3719 serine acetyltransferase, plasmid K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D TREPR_0332 putative acyltransferase K13663 gumF; acyltransferase [EC:2.3.1.-]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:tpi00730]
D TREPR_2794 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D TREPR_2724 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D TREPR_2795 thiI; thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D TREPR_3669 ThiH protein K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D TREPR_1935 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D TREPR_2243 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D TREPR_1330 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D TREPR_2686 thiamine diphosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2]
D TREPR_0854 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:tpi00740]
D TREPR_1759 putative riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D TREPR_0601 MutT/NUDIX family protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:tpi00750]
D TREPR_2627 pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D TREPR_3803 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D TREPR_0264 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D TREPR_0256 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D TREPR_0421 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:tpi00760]
D TREPR_0938 probable L-aspartate dehydrogenase K06989 nadX; aspartate dehydrogenase [EC:1.4.1.21]
D TREPR_3491 putative nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D TREPR_0918 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D TREPR_0680 phosphorylase family protein K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D TREPR_3569 putative 5'-Nucleotidase domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D TREPR_1357 protein UshA K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D TREPR_2839 UshA protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D TREPR_2953 putative 5'-Nucleotidase domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D TREPR_2800 5'-nucleotidase SurE (Nucleoside 5'-monophosphatephosphohydrolase) K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D TREPR_3452 nicotinate K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D TREPR_2518 NAD(+) diphosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D TREPR_1350 NAD(+) synthase (glutamine-hydrolyzing) K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D TREPR_1950 CinA domain protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D TREPR_3492 pyrazinamidase/nicotinamidase (PZAase)(Nicotine deamidase) (NAMase) K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D TREPR_2819 NAD-dependent deacetylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D TREPR_0513 NAD-dependent deacetylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D TREPR_2934 putative inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:tpi00770]
D TREPR_0976 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D TREPR_0983 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D TREPR_0982 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D TREPR_0977 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D TREPR_1606 dihydroxy-acid dehydratase (DAD) K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D TREPR_2913 putative PE protein K09680 PANK1_2_3; type II pantothenate kinase [EC:2.7.1.33]
D TREPR_0142 phosphopantothenoylcysteine synthetase/decarboxylase K21977 coaB; phosphopantothenate---cysteine ligase (CTP) [EC:6.3.2.5]
D TREPR_0143 coenzyme A biosynthesis bifunctional protein coaBC (DNA/pantothenatemetabolism flavoprotein) K01598 PPCDC; phosphopantothenoylcysteine decarboxylase [EC:4.1.1.36]
D TREPR_2691 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D TREPR_3137 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D TREPR_1938 acpS; holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D TREPR_3389 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D TREPR_0425 dihydroorotate oxidase K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1]
D TREPR_0426 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D TREPR_0424 N-carbamyl-L-cysteine amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
C 00780 Biotin metabolism [PATH:tpi00780]
D TREPR_1277 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D TREPR_1278 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D TREPR_1276 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D TREPR_3053 bioW; 6-carboxyhexanoate--CoA ligase K01906 bioW; 6-carboxyhexanoate--CoA ligase [EC:6.2.1.14]
D TREPR_3054 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D TREPR_3052 bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D TREPR_3051 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D TREPR_3777 biotin synthase (Biotin synthetase) K01012 bioB; biotin synthase [EC:2.8.1.6]
D TREPR_3668 radical SAM K01012 bioB; biotin synthase [EC:2.8.1.6]
D TREPR_3041 biotin-(acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:tpi00785]
D TREPR_3836 lipoate-protein ligase A (Lipoate--protein ligase) K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D TREPR_3835 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D TREPR_3838 glycine dehydrogenase (decarboxylating) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D TREPR_3837 glycine dehydrogenase (decarboxylating) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D TREPR_3840 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D TREPR_3839 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:tpi00790]
D TREPR_1330 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D TREPR_3133 tetrahydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D TREPR_1224 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D TREPR_1223 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D TREPR_3102 molybdopterin biosynthesis protein MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D TREPR_1668 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D TREPR_3093 molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:tpi00670]
D TREPR_3126 fhs; formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D TREPR_3124 bifunctional protein FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D TREPR_3125 methenyl-THF cyclohydrolase K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9]
D TREPR_3780 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D TREPR_3778 bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D TREPR_1179 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D TREPR_3840 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D TREPR_0120 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D TREPR_3849 thyX; thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D TREPR_3127 methylenetetrahydrofolate reductase (NAD(P)H) K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D TREPR_0848 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:tpi00860]
D TREPR_2817 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D TREPR_0262 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D TREPR_0260 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D TREPR_3020 hypothetical protein K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D TREPR_2998 uroporphyrinogen decarboxylase (URO-D) superfamily K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D TREPR_1312 putative methyltransferase CmuC K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D TREPR_0756 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D TREPR_0475 putative uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D TREPR_0261 uroporphyrinogen-III synthase/methyltransferase K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75]
D TREPR_0259 siroheme synthase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76]
D TREPR_0636 putative Fe-S oxidoreductase K22226 ahbC; Fe-coproporphyrin III synthase
D TREPR_0516 sirohydrochlorin cobaltochelatase K02190 cbiK; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D TREPR_0523 cobJ; precorrin-3B C(17)-methyltransferase K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272]
D TREPR_0521 cobM; precorrin-4 C(11)-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]
D TREPR_0522 CbiG K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12]
D TREPR_0520 cbiD; cobalamin biosynthesis protein CbiD K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195]
D TREPR_0525 precorrin-6y C5,15-methyltransferase (decarboxylating) K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196]
D TREPR_0531 cobalt-precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60]
D TREPR_3603 cobB_1; cobyrinic Acid a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D TREPR_0526 cobB_2; cobyrinic Acid a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D TREPR_0808 ATPase, AAA family K09882 cobS; cobaltochelatase CobS [EC:6.6.1.2]
D TREPR_1370 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D TREPR_0530 Cob(I)yrinic acid a,c-diamide adenosyltransferase (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase) K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D TREPR_0534 cobQ_1; cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D TREPR_0529 cobQ_2; cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D TREPR_0527 cobD; cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D TREPR_0543 bifunctional adenosylcobalamin biosynthesis protein CobP K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D TREPR_0546 cobS; cobalamin-5-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D TREPR_0545 cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D TREPR_0528 threonine-phosphate decarboxylase K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis
D TREPR_2540 2-oxoglutarate decarboxylase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:tpi00900]
D TREPR_1935 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D TREPR_2675 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D TREPR_1209 ispE; 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D TREPR_1025 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D TREPR_2651 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D TREPR_1548 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D TREPR_0716 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D TREPR_2673 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D TREPR_1311 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D TREPR_1310 transketolase C-section K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D TREPR_0407 1-deoxy-d-xylulose-5-phosphate synthase (1-deoxyxylulose-5-phosphate synthase) (dxp synthase) (dxps) K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D TREPR_0406 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D TREPR_0335 1-deoxy-d-xylulose-5-phosphate synthase (1-deoxyxylulose-5-phosphate synthase) (dxp synthase) (dxps) K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D TREPR_0334 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:tpi00523]
D TREPR_2382 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D TREPR_2385 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D TREPR_2383 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D TREPR_2376 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D TREPR_0202 dtdp-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D TREPR_2384 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics [PATH:tpi01055]
D TREPR_3177 (S)-2-hydroxy-acid oxidase K16422 hmo; 4-hydroxymandelate oxidase [EC:1.1.3.46]
D TREPR_2385 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:tpi00946]
D TREPR_1329 periplasmic beta-glucosidase/beta-xylosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D TREPR_1605 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D TREPR_1611 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:tpi00332]
D TREPR_0149 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D TREPR_0148 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:tpi00261]
D TREPR_3177 (S)-2-hydroxy-acid oxidase K16422 hmo; 4-hydroxymandelate oxidase [EC:1.1.3.46]
D TREPR_0249 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D TREPR_0250 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D TREPR_2974 lysine-sensitive aspartokinase 3 (Lysine-sensitiveaspartokinase III) (Aspartate kinase III) K00928 lysC; aspartate kinase [EC:2.7.2.4]
D TREPR_2791 bifunctional aspartokinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D TREPR_2977 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D TREPR_2976 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D TREPR_2975 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:tpi00521]
D TREPR_1339 hexokinase K00844 HK; hexokinase [EC:2.7.1.1]
D TREPR_1681 putative phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D TREPR_2725 phosphohexose mutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D TREPR_0660 inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D TREPR_0408 inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D TREPR_0399 inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D TREPR_2382 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D TREPR_2385 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D TREPR_2383 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D TREPR_2376 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D TREPR_0202 dtdp-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D TREPR_2384 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D TREPR_1339 hexokinase K00844 HK; hexokinase [EC:2.7.1.1]
C 00525 Acarbose and validamycin biosynthesis [PATH:tpi00525]
D TREPR_2382 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D TREPR_2385 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:tpi00401]
D TREPR_3227 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D TREPR_2697 aspartate aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D TREPR_3205 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D TREPR_0382 anthranilate synthase component 1 (Anthranilate synthasecomponent I) K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D TREPR_0383 para-aminobenzoate/anthranilate synthase glutamine amidotransferasecomponent II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D TREPR_1279 malonyl CoA-acyl carrier protein transacylase (MCT) K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D TREPR_1278 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics [PATH:tpi00998]
D TREPR_2690 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D TREPR_2364 phosphoenolpyruvate mutase K23999 fom1; phosphoenolpyruvate phosphomutase / 2-hydroxyethylphosphonate cytidylyltransferase [EC:5.4.2.9 2.7.7.104]
D TREPR_2365 aepY; phosphonopyruvate decarboxylase K09459 E4.1.1.82; phosphonopyruvate decarboxylase [EC:4.1.1.82]
C 00999 Biosynthesis of various plant secondary metabolites [PATH:tpi00999]
D TREPR_1033 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D TREPR_1798 putative 3-dehydroquinate dehydratase, type 1/shikimate 5-dehydrogenase K13832 aroDE; 3-dehydroquinate dehydratase / shikimate dehydrogenase [EC:4.2.1.10 1.1.1.25]
D TREPR_1329 periplasmic beta-glucosidase/beta-xylosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D TREPR_1605 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D TREPR_1611 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
D TREPR_1365 alanine racemase, N-domain protein K21898 orr; ornithine racemase [EC:5.1.1.12]
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:tpi00362]
D TREPR_1326 catechol 2,3 dioxygenase K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2]
D TREPR_1321 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase K10216 dmpD; 2-hydroxymuconate-semialdehyde hydrolase [EC:3.7.1.9]
D TREPR_1322 2-keto-4-pentenoate hydratase (2-hydroxypentadienoic acidhydratase) K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
D TREPR_1324 dmpG; 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
D TREPR_1323 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]
D TREPR_3678 carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D TREPR_1675 oxaloacetate decarboxylase, subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
C 00627 Aminobenzoate degradation
D TREPR_0734 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
C 00364 Fluorobenzoate degradation [PATH:tpi00364]
D TREPR_2877 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00625 Chloroalkane and chloroalkene degradation [PATH:tpi00625]
D TREPR_3297 aldehyde-alcohol dehydrogenase 2 K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D TREPR_0246 oxidoreductase/nitrogenase, component 1 K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]
D TREPR_2886 nifK; nitrogenase molybdenum-iron protein beta chain K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]
D TREPR_0248 nitrogenase iron protein 1 (Nitrogenase component II)(Nitrogenase Fe protein 1) (Nitrogenase reductase) K02588 nifH; nitrogenase iron protein NifH
D TREPR_3541 nifH_1; nitrogenase iron protein K02588 nifH; nitrogenase iron protein NifH
D TREPR_2890 nifH_2; nitrogenase iron protein K02588 nifH; nitrogenase iron protein NifH
D TREPR_0541 nitrogen fixation protein NifH/NifE K02588 nifH; nitrogenase iron protein NifH
D TREPR_2887 nifD; nitrogenase molybdenum-iron protein alpha chain K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:tpi00361]
D TREPR_2877 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D TREPR_1326 catechol 2,3 dioxygenase K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2]
C 00623 Toluene degradation [PATH:tpi00623]
D TREPR_2877 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation [PATH:tpi00622]
D TREPR_1326 catechol 2,3 dioxygenase K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2]
D TREPR_1321 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase K10216 dmpD; 2-hydroxymuconate-semialdehyde hydrolase [EC:3.7.1.9]
D TREPR_1322 2-keto-4-pentenoate hydratase (2-hydroxypentadienoic acidhydratase) K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
D TREPR_1324 dmpG; 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
D TREPR_1323 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]
C 00633 Nitrotoluene degradation
D TREPR_3069 cooS; carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation [PATH:tpi00643]
D TREPR_1326 catechol 2,3 dioxygenase K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2]
D TREPR_1321 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase K10216 dmpD; 2-hydroxymuconate-semialdehyde hydrolase [EC:3.7.1.9]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation [PATH:tpi00621]
D TREPR_1322 2-keto-4-pentenoate hydratase (2-hydroxypentadienoic acidhydratase) K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
D TREPR_1324 dmpG; 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
D TREPR_1323 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]
C 00626 Naphthalene degradation [PATH:tpi00626]
D TREPR_3297 aldehyde-alcohol dehydrogenase 2 K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:tpi03020]
D TREPR_0930 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D TREPR_0931 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D TREPR_1501 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D TREPR_2532 conserved domain protein K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D TREPR_3455 hypothetical protein K03048 rpoE; DNA-directed RNA polymerase subunit delta
C 03022 Basal transcription factors
D TREPR_2945 DNA or RNA helicase of superfamily II K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:tpi03010]
D TREPR_2339 cytidylate kinase/ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D TREPR_2670 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D TREPR_1483 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D TREPR_1500 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D TREPR_1494 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D TREPR_2685 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D TREPR_1472 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D TREPR_1491 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D TREPR_2982 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D TREPR_1476 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D TREPR_1499 rpsK; ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D TREPR_1471 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D TREPR_1498 rpsM; ribosomal protein S13p/S18e K02952 RP-S13; small subunit ribosomal protein S13
D TREPR_1490 rpsN; ribosomal protein S14p/S29e K02954 RP-S14; small subunit ribosomal protein S14
D TREPR_1760 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D TREPR_3153 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D TREPR_1486 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D TREPR_2683 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D TREPR_1481 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D TREPR_1945 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D TREPR_0998 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D TREPR_0927 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D TREPR_1480 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D TREPR_1477 rplC; ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D TREPR_1478 rplD; ribosomal protein, L4/L1 family K02926 RP-L4; large subunit ribosomal protein L4
D TREPR_1492 50S ribosomal protein L6 (BL10) K02933 RP-L6; large subunit ribosomal protein L6
D TREPR_0929 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D TREPR_2681 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D TREPR_0928 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D TREPR_0926 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D TREPR_2981 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D TREPR_1487 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D TREPR_1496 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D TREPR_1484 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D TREPR_1502 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D TREPR_1493 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D TREPR_3157 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D TREPR_1647 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D TREPR_3448 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D TREPR_1482 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D TREPR_1479 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D TREPR_1488 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D TREPR_1206 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25
D TREPR_3450 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D TREPR_0850 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D TREPR_1485 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D TREPR_1495 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D TREPR_2579 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D TREPR_0921 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D TREPR_0506 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D TREPR_1646 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D TREPR_3901 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D TREPR_3915 rrsB; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D TREPR_3899 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D TREPR_3917 rrlB; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D TREPR_3898 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D TREPR_3918 rrfB; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:tpi00970]
D TREPR_3909 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D TREPR_3945 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D TREPR_3916 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D TREPR_3896 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D TREPR_3935 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D TREPR_3941 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D TREPR_3930 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D TREPR_3953 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D TREPR_3910 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D TREPR_3949 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D TREPR_3924 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D TREPR_3914 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D TREPR_3946 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D TREPR_3928 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D TREPR_3947 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D TREPR_3932 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D TREPR_3934 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D TREPR_3927 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D TREPR_3908 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D TREPR_3923 tRNA-His K14226 tRNA-His; tRNA His
D TREPR_3900 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D TREPR_3906 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D TREPR_3937 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D TREPR_3950 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D TREPR_3939 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D TREPR_3940 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D TREPR_3933 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D TREPR_3911 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D TREPR_3920 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D TREPR_3931 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D TREPR_3956 tRNA-Met K14230 tRNA-Met; tRNA Met
D TREPR_3902 tRNA-Met K14230 tRNA-Met; tRNA Met
D TREPR_3936 tRNA-Met K14230 tRNA-Met; tRNA Met
D TREPR_3938 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D TREPR_3919 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D TREPR_3907 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D TREPR_3948 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D TREPR_3955 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D TREPR_3954 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D TREPR_3951 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D TREPR_3952 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D TREPR_3912 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D TREPR_3925 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D TREPR_3905 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D TREPR_3913 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D TREPR_3926 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D TREPR_3897 tRNA-Val K14237 tRNA-Val; tRNA Val
D TREPR_3942 tRNA-Val K14237 tRNA-Val; tRNA Val
D TREPR_3922 tRNA-Val K14237 tRNA-Val; tRNA Val
D TREPR_3943 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D TREPR_2817 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D TREPR_3637 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D TREPR_3638 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D TREPR_0665 putative aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D TREPR_0553 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D TREPR_0781 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D TREPR_1369 threonyl/alanyl tRNA synthetase, SAD K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D TREPR_3381 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D TREPR_3639 aspartyl-tRNA synthetase (Aspartate--tRNA ligase)(AspRS) K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D TREPR_2215 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D TREPR_0735 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D TREPR_0136 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D TREPR_1075 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D TREPR_3084 selA; L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D TREPR_1627 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D TREPR_1795 methionyl-tRNA synthetase (Methionine--tRNA ligase)(MetRS) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D TREPR_1179 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D TREPR_1570 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D TREPR_3229 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D TREPR_2528 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D TREPR_2750 lysS; lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D TREPR_3443 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D TREPR_0663 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D TREPR_2696 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D TREPR_0460 phenylalanyl-tRNA synthetase alpha chain (Phenylalanine--tRNA ligase alpha chain) (PheRS) K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D TREPR_0483 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D TREPR_3469 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D TREPR_3576 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:tpi03060]
D TREPR_1497 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D TREPR_0924 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D TREPR_1144 translocase K03075 secG; preprotein translocase subunit SecG
D TREPR_1546 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D TREPR_1547 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D TREPR_1545 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D TREPR_0503 inner membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D TREPR_2352 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D TREPR_0615 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D TREPR_3904 srpB; Bacterial signal recognition particle RNA K01983 ffs; SRP RNA
D TREPR_1768 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D TREPR_2210 lepB_3; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D TREPR_2488 lepB_1; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D TREPR_2487 lepB_2; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D TREPR_0768 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:tpi04122]
D TREPR_2794 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D TREPR_2724 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D TREPR_0375 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D TREPR_1224 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D TREPR_3715 thiamineS protein K03636 moaD; sulfur-carrier protein
D TREPR_0245 Uba/ThiF-type NAD/FAD-binding protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D TREPR_3716 Uba/ThiF-type NAD/FAD-binding protein K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D TREPR_1223 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D TREPR_2795 thiI; thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D TREPR_0257 thiS; thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein
D TREPR_0258 Mov34/MPN/PAD-1 K21140 mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6]
C 03050 Proteasome
C 03018 RNA degradation [PATH:tpi03018]
D TREPR_0776 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D TREPR_1761 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D TREPR_2984 dead/deah box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D TREPR_1182 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D TREPR_1620 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D TREPR_2580 transcription termination factor rho (ATP-dependenthelicase rho) K03628 rho; transcription termination factor Rho
D TREPR_3032 conserved hypothetical protein K18682 rny; ribonucrease Y [EC:3.1.-.-]
D TREPR_0812 beta-lactamase domain protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D TREPR_0608 diphosphate--fructose-6-phosphate 1-phosphotransferase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D TREPR_3307 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D TREPR_0312 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D TREPR_0596 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D TREPR_0669 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D TREPR_0242 putative RNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D TREPR_1737 polyA polymerase family protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:tpi03030]
D TREPR_3868 putative exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D TREPR_3623 DNA polymerase III PolC-type (PolIII) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D TREPR_0945 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D TREPR_3821 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D TREPR_2223 DNA polymerase III domain protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D TREPR_0447 DNA polymerase III, gamma and tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D TREPR_0682 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D TREPR_0275 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D TREPR_2680 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D TREPR_2320 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D TREPR_0125 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D TREPR_2684 plasmid-derived single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein) K03111 ssb; single-strand DNA-binding protein
D TREPR_0887 single-strand binding family protein K03111 ssb; single-strand DNA-binding protein
D TREPR_0598 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D TREPR_2806 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D TREPR_3060 DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TREPR_2640 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:tpi03410]
D TREPR_1026 endonuclease III protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D TREPR_2411 HhH-GPD family protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D TREPR_2313 methylated-DNA--[protein]-cysteine S-methyltransferase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D TREPR_0372 DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D TREPR_2604 DNA polymerase domain protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D TREPR_0702 conserved hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D TREPR_2811 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D TREPR_3060 DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TREPR_1001 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D TREPR_2640 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:tpi03420]
D TREPR_1911 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D TREPR_2582 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D TREPR_0648 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D TREPR_1101 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D TREPR_1192 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TREPR_1617 helicase, UvrD/Rep family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TREPR_3060 DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TREPR_2640 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TREPR_2945 DNA or RNA helicase of superfamily II K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
C 03430 Mismatch repair [PATH:tpi03430]
D TREPR_2630 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D TREPR_2244 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2
D TREPR_2468 DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D TREPR_1192 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TREPR_1617 helicase, UvrD/Rep family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TREPR_2466 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D TREPR_2467 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D TREPR_1001 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D TREPR_0125 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D TREPR_2684 plasmid-derived single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein) K03111 ssb; single-strand DNA-binding protein
D TREPR_0887 single-strand binding family protein K03111 ssb; single-strand DNA-binding protein
D TREPR_3821 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D TREPR_0275 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D TREPR_2223 DNA polymerase III domain protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D TREPR_0447 DNA polymerase III, gamma and tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D TREPR_0682 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D TREPR_3868 putative exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D TREPR_3623 DNA polymerase III PolC-type (PolIII) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D TREPR_0945 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D TREPR_2640 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TREPR_3463 modification methylase lladchia (adenine-specificmethyltransferase lladchia) (m.lladchia) (m.lladchi a) (m.llaii a) K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:tpi03440]
D TREPR_1001 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D TREPR_0125 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D TREPR_2684 plasmid-derived single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein) K03111 ssb; single-strand DNA-binding protein
D TREPR_0887 single-strand binding family protein K03111 ssb; single-strand DNA-binding protein
D TREPR_0274 RecF protein K03629 recF; DNA replication and repair protein RecF
D TREPR_1003 putative recombination protein O K03584 recO; DNA repair protein RecO (recombination protein O)
D TREPR_0449 recR; recombination protein RecR K06187 recR; recombination protein RecR
D TREPR_2344 protein RecA (Recombinase A) K03553 recA; recombination protein RecA
D TREPR_3060 DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TREPR_1829 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D TREPR_1809 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D TREPR_2937 crossover junction endodeoxyribonuclease RuvC (Hollidayjunction nuclease ruvC) (Holliday junction resolvase ruvC) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D TREPR_3819 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D TREPR_3635 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D TREPR_3821 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D TREPR_0275 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D TREPR_2223 DNA polymerase III domain protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D TREPR_0447 DNA polymerase III, gamma and tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D TREPR_0682 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D TREPR_3868 putative exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D TREPR_3623 DNA polymerase III PolC-type (PolIII) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D TREPR_0945 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D TREPR_2605 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:tpi03250]
D TREPR_0450 peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:tpi02010]
D TREPR_0255 sulfate-binding protein (Sulfate starvation-induced protein2) (SSI2) K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D TREPR_0254 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D TREPR_0253 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D TREPR_0252 sulfate/thiosulfate import ATP-binding protein CysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D TREPR_2910 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D TREPR_1982 iron ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D TREPR_1974 conserved hypothetical ABC transporter periplasmic solute-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D TREPR_1526 conserved hypothetical ABC transporter periplasmic solute-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D TREPR_1511 putative ABC transporter, substrate binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D TREPR_3035 extracellular solute-binding protein, family 1 K02012 afuA; iron(III) transport system substrate-binding protein
D TREPR_0283 putative iron ABC transporter, solute-binding lipoprotein K02012 afuA; iron(III) transport system substrate-binding protein
D TREPR_0657 iron ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D TREPR_1981 ABC transporter permease protein K02011 afuB; iron(III) transport system permease protein
D TREPR_1976 ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D TREPR_1527 ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D TREPR_3037 Fe3+ ABC transporter permease K02011 afuB; iron(III) transport system permease protein
D TREPR_1510 ABC transporter permease protein K02011 afuB; iron(III) transport system permease protein
D TREPR_0285 putative ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D TREPR_0658 iron(III) dicitrate transport ATP-binding protein FecE K02011 afuB; iron(III) transport system permease protein
D TREPR_1980 Fe(3+) ions import ATP-binding protein FbpC K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D TREPR_1509 Fe(3+) ions import ATP-binding protein FbpC K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D TREPR_3036 Fe(3+) ions import ATP-binding protein FbpC K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D TREPR_0284 sulfate/thiosulfate import ATP-binding protein CysA 2 (Sulfate-transporting ATPase 2) K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D TREPR_0659 spermidine/putrescine ABC transporter ATP-binding subunit K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D TREPR_1528 tobe domain family K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D TREPR_1975 tobe domain family K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D TREPR_3219 thiamine-binding periplasmic protein K02064 thiB; thiamine transport system substrate-binding protein
D TREPR_3220 abc transporter integral membrane protein K02063 thiP; thiamine transport system permease protein
D TREPR_3221 Fe(3+) ions import ATP-binding protein FbpC K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D TREPR_1465 spermidine/putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D TREPR_0570 spermidine/putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D TREPR_1466 ornithine carbamoyltransferase K11070 potC; spermidine/putrescine transport system permease protein
D TREPR_0569 spermidine/putrescine transport system permease protein PotC K11070 potC; spermidine/putrescine transport system permease protein
D TREPR_1467 spermidine/putrescine transport system permease protein PotB K11071 potB; spermidine/putrescine transport system permease protein
D TREPR_0568 spermidine/putrescine transport system permease protein PotB K11071 potB; spermidine/putrescine transport system permease protein
D TREPR_1468 spermidine/putrescine ABC transporter ATP-binding subunit K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D TREPR_0567 spermidine/putrescine import ATP-binding protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D TREPR_0108 multiple sugar-binding transport ATP-binding protein MsmK K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D TREPR_1442 putative bacterial extracellular solute-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D TREPR_2003 putative sugar ABC transporter K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D TREPR_1610 putative extracellular solute-binding protein, family 1 K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D TREPR_1601 putative bacterial extracellular solute-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D TREPR_3845 putative sugar ABC-transporter, sugar-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D TREPR_1602 sugar ABC transporter permease K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D TREPR_1443 sugar ABC transporter permease K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D TREPR_1609 sugar ABC transporter permease K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D TREPR_3844 ABC transporter, permease protein K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D TREPR_1603 ABC transporter, permease protein K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D TREPR_1444 sugar ABC transporter permease K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D TREPR_1608 sugar ABC transporter permease K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D TREPR_3843 ABC transporter, permease protein K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D TREPR_2989 extracellular solute-binding protein family 1 K10188 lacE; lactose/L-arabinose transport system substrate-binding protein
D TREPR_2988 ABC transporter, permease protein K10189 lacF; lactose/L-arabinose transport system permease protein
D TREPR_2987 ABC transporter, permease protein K10190 lacG; lactose/L-arabinose transport system permease protein
D TREPR_3001 ABC transporter K10546 chvE; putative multiple sugar transport system substrate-binding protein
D TREPR_2999 L-arabinose ABC transporter K10547 gguB; putative multiple sugar transport system permease protein
D TREPR_3000 xylose import ATP-binding protein XylG K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D TREPR_0794 Mce-like protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D TREPR_0796 ABC transporter permease protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D TREPR_0795 putative ABC transporter, ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D TREPR_3531 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D TREPR_1253 membrane protein, Bmp family K07335 bmpA; basic membrane protein A and related proteins
D TREPR_1252 membrane protein, Bmp family K07335 bmpA; basic membrane protein A and related proteins
D TREPR_3533 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein
D TREPR_3534 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein
D TREPR_3532 ribose import ATP-binding protein RbsA K23537 nupA; general nucleoside transport system ATP-binding protein
D TREPR_0266 periplasmic sugar-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D TREPR_0404 D-ribose-binding periplasmic protein K10439 rbsB; ribose transport system substrate-binding protein
D TREPR_0267 ribose transport system permease protein RbsC K10440 rbsC; ribose transport system permease protein
D TREPR_0403 ribose transport system permease protein RbsC K10440 rbsC; ribose transport system permease protein
D TREPR_0268 ribose import ATP-binding protein RbsA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D TREPR_0402 ribose import ATP-binding protein RbsA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D TREPR_0729 D-galactose-binding periplasmic protein (gbp) (d-galactose/d-glucose-binding protein) (ggbp) K10540 mglB; methyl-galactoside transport system substrate-binding protein
D TREPR_0727 galactoside transport system permease protein MglC K10541 mglC; methyl-galactoside transport system permease protein
D TREPR_0728 galactose/methyl galactoside import ATP-binding protein MglA K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D TREPR_3003 D-xylose-binding protein K10543 xylF; D-xylose transport system substrate-binding protein
D TREPR_1521 putative sugar ABC-transporter, sugar-binding protein K17213 K17213; inositol transport system substrate-binding protein
D TREPR_1520 ribose transport system permease protein RbsC K17214 K17214; inositol transport system permease protein
D TREPR_1519 ribose import ATP-binding protein RbsA K17215 K17215; inositol transport system ATP-binding protein
D TREPR_3328 glycerol-3-phosphate ABC transporter substarate-binding protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D TREPR_3326 glycerol-3-phosphate ABC transporter K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D TREPR_3327 sugar permease K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D TREPR_0963 glutamine-binding protein (GlnBP) K10039 peb1A; aspartate/glutamate/glutamine transport system substrate-binding protein
D TREPR_0965 polar amino acid ABC transporter, inner membrane subunit K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein
D TREPR_0964 glutamine ABC transporter, permease/substrate-binding protein K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein
D TREPR_0962 glutamine transport ATP-binding protein GlnQ K10041 peb1C; aspartate/glutamate/glutamine transport system ATP-binding protein [EC:7.4.2.1]
D TREPR_1355 amino acid ABC-transporter, periplasmic amino acid-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D TREPR_1354 L-cystine transport system permease protein TcyB K10009 tcyB; L-cystine transport system permease protein
D TREPR_1353 L-cystine import ATP-binding protein TcyN K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D TREPR_3345 conserved hypothetical protein K16957 tcyK; L-cystine transport system substrate-binding protein
D TREPR_3339 bacterial extracellular solute-binding protein, family 3 K16957 tcyK; L-cystine transport system substrate-binding protein
D TREPR_3340 ABC-type amino acid transport system, permease component K16958 tcyL; L-cystine transport system permease protein
D TREPR_3346 ABC-type amino acid transport system, permease component K16958 tcyL; L-cystine transport system permease protein
D TREPR_3344 ABC-type amino acid transport system, permease component K16959 tcyM; L-cystine transport system permease protein
D TREPR_3338 ABC-type amino acid transport system, permease component K16959 tcyM; L-cystine transport system permease protein
D TREPR_3343 L-cystine import ATP-binding protein TcyN K16960 tcyN; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D TREPR_3337 L-cystine import ATP-binding protein TcyN K16960 tcyN; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D TREPR_3088 probable amino-acid ABC transporter,substrate-binding protein K16961 yxeM; putative S-methylcysteine transport system substrate-binding protein
D TREPR_3087 L-cystine transport system permease protein TcyB K16962 yxeN; putative S-methylcysteine transport system permease protein
D TREPR_3089 L-cystine import ATP-binding protein TcyN K16963 yxeO; putative S-methylcysteine transport system ATP-binding protein
D TREPR_0723 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family K17077 artQ; arginine/lysine/histidine transport system permease protein
D TREPR_0724 glutamine transport ATP-binding protein GlnQ K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D TREPR_0185 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D TREPR_1122 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D TREPR_0444 receptor family ligand-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D TREPR_0432 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D TREPR_1123 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D TREPR_0442 putative inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D TREPR_0433 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D TREPR_1124 high-affinity branched-chain amino acid transport system permease protein LivM K01998 livM; branched-chain amino acid transport system permease protein
D TREPR_0443 putative inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D TREPR_0434 high-affinity branched chain amino acid ABC transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D TREPR_1125 branched-chain amino acid ABC transporter K01995 livG; branched-chain amino acid transport system ATP-binding protein
D TREPR_0440 branched-chain amino acid transport ATP-binding protein LivG K01995 livG; branched-chain amino acid transport system ATP-binding protein
D TREPR_0435 high affinity branched-chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D TREPR_1126 branched-chain amino acid ABC transporter K01996 livF; branched-chain amino acid transport system ATP-binding protein
D TREPR_0441 high affinity branched-chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D TREPR_0436 high-affinity branched-chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D TREPR_2332 nlpa lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D TREPR_2727 lipoprotein, nlpa family K02073 metQ; D-methionine transport system substrate-binding protein
D TREPR_3507 D-methionine transport system permease protein MetI K02072 metI; D-methionine transport system permease protein
D TREPR_0832 D-methionine transport system permease protein MetI K02072 metI; D-methionine transport system permease protein
D TREPR_2333 D-methionine transport system permease protein MetI K02072 metI; D-methionine transport system permease protein
D TREPR_3506 methionine import ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein
D TREPR_0833 methionine import ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein
D TREPR_2334 methionine import ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein
D TREPR_3667 periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D TREPR_3661 oligopeptide transport system permease protein OppB K15581 oppB; oligopeptide transport system permease protein
D TREPR_3662 oligopeptide transport system permease protein OppC K15582 oppC; oligopeptide transport system permease protein
D TREPR_3663 oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein
D TREPR_3664 oligopeptide transport ATP-binding protein AppF K10823 oppF; oligopeptide transport system ATP-binding protein
D TREPR_3183 adhesion protein K09815 znuA; zinc transport system substrate-binding protein
D TREPR_3185 ABC-type transport system, permease component K09816 znuB; zinc transport system permease protein
D TREPR_3184 zinc import ATP-binding protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D TREPR_3292 cobalamin K02007 cbiM; cobalt/nickel transport system permease protein
D TREPR_3293 cbiQ; cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D TREPR_3294 cobalt import ATP-binding protein CbiO 2 K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D TREPR_3129 putative cobalt transport permease, CbiQ family K16785 ecfT; energy-coupling factor transport system permease protein
D TREPR_3760 cobalt transport protein superfamily K16785 ecfT; energy-coupling factor transport system permease protein
D TREPR_3130 cobalt import ATP-binding protein CbiO 2 K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D TREPR_1052 putative lipoprotein K10555 lsrB; AI-2 transport system substrate-binding protein
D TREPR_0233 MemBrane lipoprotein TpN38(b) K23510 rfuA; riboflavin transport system substrate-binding protein
D TREPR_0235 branched-chain amino acid ABC transporter, permease protein K23511 rfuC; riboflavin transport system permease protein
D TREPR_0236 ABC transporter, permease protein K23512 rfuD; riboflavin transport system permease protein
D TREPR_0234 ribose import ATP-binding protein RbsA 1 K23513 rfuB; riboflavin transport system ATP-binding protein
D TREPR_2369 ABC transporter, permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein
D TREPR_2537 O-antigen export system permease protein RfbA K09690 wzm; homopolymeric O-antigen transport system permease protein
D TREPR_2371 ABC transporter, ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D TREPR_2538 teichoic acids export ATP-binding protein TagH (Teichoicacid-transporting ATPase) K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D TREPR_1772 putative lipoprotein releasing system, permease protein K09808 lolC_E; lipoprotein-releasing system permease protein
D TREPR_1770 putative lipoprotein releasing system, permease protein K09808 lolC_E; lipoprotein-releasing system permease protein
D TREPR_1771 lipoprotein-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D TREPR_1763 putative permease, YjgP/YjgQ family K07091 lptF; lipopolysaccharide export system permease protein
D TREPR_1764 putative permease, YjgP/YjgQ family K11720 lptG; lipopolysaccharide export system permease protein
D TREPR_3017 ABC transporter, ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D TREPR_2931 ABC-type multidrug/protein/lipid transport system, ATPase component K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D TREPR_2666 MDR-type ABC transporter K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D TREPR_2667 ABC-type multidrug/protein/lipid transport system, ATPase component K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D TREPR_2930 ABC-type multidrug/protein/lipid transport system, ATPase component K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D TREPR_1378 ABC-type multidrug/protein/lipid transport system, ATPase component K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D TREPR_1379 ABC-type multidrug/protein/lipid transport system, ATPase component K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
C 02060 Phosphotransferase system (PTS) [PATH:tpi02060]
D TREPR_3189 ptsP_1; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D TREPR_2962 ptsP_2; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D TREPR_2950 ptsP_3; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D TREPR_0463 ptsP_4; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D TREPR_2967 phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D TREPR_0464 phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D TREPR_0686 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D TREPR_2951 phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D TREPR_2954 PTS system beta-glucoside-specific EIIBCA component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D TREPR_2965 pts system mannitol-specific eiicba component K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197]
D TREPR_2968 pts system mannitol-specific eiicba component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D TREPR_0466 lichenan-specific phosphotransferase enzyme iia component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D TREPR_0467 lichenan-specific phosphotransferase enzyme iib component (pts system lichenan-specific eiib component) (eiib-lic) K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D TREPR_0468 PTS system, IIc component K02761 celB; cellobiose PTS system EIIC component
D TREPR_0489 PTS system, IIA component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D TREPR_2964 pfkB; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D TREPR_1145 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 domain protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D TREPR_1779 DNA-binding protein/PTS system, IIA component K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D TREPR_0959 PTS system IIA component, fructose subfamily K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:tpi03070]
D TREPR_1397 bacterial type II and III secretion system protein K02453 gspD; general secretion pathway protein D
D TREPR_1394 gspG; general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D TREPR_1396 general secretion pathway protein E (Type II traffic warden ATPase) K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D TREPR_1398 peptidase, A24 (type IV prepilin peptidase) family K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D TREPR_1546 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D TREPR_1547 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D TREPR_0924 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D TREPR_1144 translocase K03075 secG; preprotein translocase subunit SecG
D TREPR_1497 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D TREPR_1545 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D TREPR_0503 inner membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D TREPR_2352 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D TREPR_1768 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D TREPR_0615 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:tpi02020]
D TREPR_1330 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D TREPR_1199 trypsin domain/PDZ domain protein K04771 degP; serine protease Do [EC:3.4.21.107]
D TREPR_1932 flagellar filament 34.5 kDa core protein (Class B) K02406 fliC; flagellin
D TREPR_1931 flagellar filament 34.5 kDa core protein (Class B) K02406 fliC; flagellin
D TREPR_0296 flagellar filament 34.5 kDa core protein (Class B) K02406 fliC; flagellin
D TREPR_2845 RNA polymerase sigma-D factor K02405 fliA; RNA polymerase sigma factor FliA
D TREPR_2861 chemotaxis protein PomA K02556 motA; chemotaxis protein MotA
D TREPR_1586 signal transduction histidine kinase K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D TREPR_0277 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D TREPR_1572 carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D TREPR_2228 sensory box histidine kinase K13533 kinE; two-component system, sporulation sensor kinase E [EC:2.7.13.3]
D TREPR_1289 citC; [citrate (pro-3S)-lyase] ligase K01910 citC; [citrate (pro-3S)-lyase] ligase [EC:6.2.1.22]
D TREPR_2543 citrate lyase ligase C-domain protein K01910 citC; [citrate (pro-3S)-lyase] ligase [EC:6.2.1.22]
D TREPR_2542 citrate lyase ligase C-domain protein K01910 citC; [citrate (pro-3S)-lyase] ligase [EC:6.2.1.22]
D TREPR_2541 citrate lyase ligase C-domain protein K01910 citC; [citrate (pro-3S)-lyase] ligase [EC:6.2.1.22]
D TREPR_1286 citD_2; citrate lyase acyl carrier protein K01646 citD; citrate lyase subunit gamma (acyl carrier protein)
D TREPR_3314 citD_1; citrate lyase acyl carrier protein K01646 citD; citrate lyase subunit gamma (acyl carrier protein)
D TREPR_1287 citrate lyase subunit beta (Citrase beta chain) (Citrate(pro-3S)-lyase subunit beta) (Citryl-CoA lyase subunit) K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D TREPR_3315 citE; citrate (pro-3S)-lyase, beta subunit K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D TREPR_1288 citF_2; citrate lyase, alpha subunit K01643 citF; citrate lyase subunit alpha / citrate CoA-transferase [EC:2.8.3.10]
D TREPR_3316 citF_1; citrate lyase, alpha subunit K01643 citF; citrate lyase subunit alpha / citrate CoA-transferase [EC:2.8.3.10]
D TREPR_1308 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase (2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase) K13927 citXG; holo-ACP synthase / triphosphoribosyl-dephospho-CoA synthase [EC:2.7.7.61 2.4.2.52]
D TREPR_0393 malate dehydrogenase (oxaloacetate-decarboxylating) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D TREPR_3347 ExpA K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D TREPR_2015 transcriptional regulator, LuxR family protein K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D TREPR_1922 csrA; carbon storage regulator K03563 csrA; carbon storage regulator
D TREPR_3518 DNA-binding response regulator K11618 liaR; two-component system, NarL family, response regulator LiaR
D TREPR_3525 glutamine synthetase (Glutamate--ammonia ligase) (GS) K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D TREPR_0685 histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D TREPR_0684 nitrogen assimilation regulatory protein NtrX K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D TREPR_3511 nifA_1; Nif-specific regulatory protein K02584 nifA; Nif-specific regulatory protein
D TREPR_2893 transcriptional regulator, NifA subfamily, Fis Family K02584 nifA; Nif-specific regulatory protein
D TREPR_2338 nifA_2; Nif-specific regulatory protein K02584 nifA; Nif-specific regulatory protein
D TREPR_0161 putative signal transduction histidine kinase, nitrogen specific, NtrB K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D TREPR_0162 sigma-54 dependent transcriptional regulator/response regulator K07714 atoC; two-component system, NtrC family, response regulator AtoC
D TREPR_2731 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D TREPR_1658 putative MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D TREPR_3013 cheR; CheR methyltransferase, SAM-binding domain protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D TREPR_0052 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_1705 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_3059 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_1664 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_1656 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_2978 Mcp-2 K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_2941 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_2733 putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_2928 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_0699 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_0495 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_0494 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_0493 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_2936 purine-binding chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW
D TREPR_1661 conserved hypothetical protein K03408 cheW; purine-binding chemotaxis protein CheW
D TREPR_2971 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D TREPR_2972 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D TREPR_1655 response regulator receiver domain protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D TREPR_3361 chemotaxis protein Chey K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D TREPR_1659 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D TREPR_3012 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D TREPR_3815 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D TREPR_1068 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D TREPR_1700 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D TREPR_3004 Two-component response regulator K07720 yesN; two-component system, response regulator YesN
D TREPR_3404 transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D TREPR_0192 putative ClpX, ATPase regulatory subunit K01991 wza; polysaccharide biosynthesis/export protein
D TREPR_3726 putative polysaccharide biosynthesis/export domain protein K01991 wza; polysaccharide biosynthesis/export protein
D TREPR_0356 hypothetical protein K01991 wza; polysaccharide biosynthesis/export protein
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D TREPR_3147 decarboxylase, pyridoxal-dependent family K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:tpi02024]
D TREPR_3176 luxS; S-ribosylhomocysteinase LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D TREPR_0382 anthranilate synthase component 1 (Anthranilate synthasecomponent I) K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D TREPR_0383 para-aminobenzoate/anthranilate synthase glutamine amidotransferasecomponent II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D TREPR_1052 putative lipoprotein K10555 lsrB; AI-2 transport system substrate-binding protein
D TREPR_3784 FGGY domain protein K11216 lsrK; autoinducer-2 kinase [EC:2.7.1.189]
D TREPR_3783 deoxyribose-phosphate aldolase superfamily K08321 lsrF; 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase [EC:2.3.1.245]
D TREPR_0084 PotD protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D TREPR_0087 ABC transporter, permease protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D TREPR_0086 PotB protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D TREPR_0085 spermidine/putrescine import ATP-binding protein PotA K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D TREPR_0185 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D TREPR_1122 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D TREPR_0444 receptor family ligand-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D TREPR_0432 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D TREPR_1123 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D TREPR_0442 putative inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D TREPR_0433 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D TREPR_1124 high-affinity branched-chain amino acid transport system permease protein LivM K01998 livM; branched-chain amino acid transport system permease protein
D TREPR_0443 putative inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D TREPR_0434 high-affinity branched chain amino acid ABC transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D TREPR_1125 branched-chain amino acid ABC transporter K01995 livG; branched-chain amino acid transport system ATP-binding protein
D TREPR_0440 branched-chain amino acid transport ATP-binding protein LivG K01995 livG; branched-chain amino acid transport system ATP-binding protein
D TREPR_0435 high affinity branched-chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D TREPR_1126 branched-chain amino acid ABC transporter K01996 livF; branched-chain amino acid transport system ATP-binding protein
D TREPR_0441 high affinity branched-chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D TREPR_0436 high-affinity branched-chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D TREPR_2075 putative lipoprotein K20276 bapA; large repetitive protein
D TREPR_1438 putative lipoprotein K20276 bapA; large repetitive protein
D TREPR_0175 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D TREPR_1173 long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D TREPR_0987 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D TREPR_3815 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D TREPR_1068 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D TREPR_1700 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D TREPR_3667 periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D TREPR_3661 oligopeptide transport system permease protein OppB K15581 oppB; oligopeptide transport system permease protein
D TREPR_3662 oligopeptide transport system permease protein OppC K15582 oppC; oligopeptide transport system permease protein
D TREPR_3663 oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein
D TREPR_3664 oligopeptide transport ATP-binding protein AppF K10823 oppF; oligopeptide transport system ATP-binding protein
D TREPR_3546 putative extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_1955 ABC transporter peptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_1780 bacterial extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_2433 putative ABC transporter component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_2432 putative dipeptide-binding abc transporter protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_1332 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_0936 putative bacterial extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_0830 OppA1 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_1533 putative transporter K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_3270 peptide/opine/nickel ABC transporter K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_2131 oligopeptide ABC transporter, oligopeptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_0707 dipeptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_0480 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_0671 putative ABC transporter peptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_3026 oligopeptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_3027 oligopeptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_3139 bacterial extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_1377 putative oligopeptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_3542 probable peptide ABC transporter permease protein y4tP K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_0703 inner membrane ABC transporter permease protein YddR K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_1956 gsiC; glutathione ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_1785 oligopeptide transport system permease protein AppB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_2431 ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_1376 probable peptide ABC transporter permease protein y4tP K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_1333 ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_0934 probable peptide ABC transporter permease protein y4tP K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_0825 oligopeptide transport system permease protein OppB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_1532 oligopeptide transport system permease protein AppB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_3269 ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_2130 oligopeptide transport system permease protein AppB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_3028 oligopeptide transport system permease protein AppB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_0479 ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_0672 oligopeptide transport system permease protein AppB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_1957 glutathione transport system permease protein GsiD K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TREPR_1784 oligopeptide transport system permease protein AppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TREPR_2430 glutathione transport system permease protein GsiD K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TREPR_1375 dipeptide transport system permease protein DppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TREPR_1334 ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TREPR_0826 glutathione transport system permease protein GsiD K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TREPR_3268 ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TREPR_2129 oligopeptide transport system permease protein AppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TREPR_3029 glutathione transport system permease protein GsiD K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TREPR_0704 glutathione transport system permease protein GsiD K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TREPR_0935 glutathione transport system permease protein GsiD K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TREPR_0673 glutathione transport system permease protein GsiD K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TREPR_0478 oligopeptide transport system permease protein AppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TREPR_3543 glutathione import ATP-binding protein GsiA K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_1531 peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_0933 oligopeptide transport ATP-binding protein AppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_0705 oligopeptide transport ATP-binding protein OppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_1374 oligopeptide transport ATP-binding protein AppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_1958 oligopeptide transport ATP-binding protein OppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_1787 oligopeptide transport ATP-binding protein AppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_0827 dipeptide transport ATP-binding protein DppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_3267 oligopeptide/dipeptide ABC transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_3295 glutathione import ATP-binding protein GsiA K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_0674 oligopeptide transport ATP-binding protein OppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_0477 dipeptide transport ATP-binding protein DppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_2429 dipeptide transport ATP-binding protein DppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_2128 dipeptide transport ATP-binding protein DppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_0706 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D TREPR_1959 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D TREPR_0932 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D TREPR_3031 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D TREPR_2428 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D TREPR_1373 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D TREPR_0476 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D TREPR_2127 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D TREPR_1530 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D TREPR_0675 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D TREPR_1786 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D TREPR_0503 inner membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D TREPR_0924 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D TREPR_1144 translocase K03075 secG; preprotein translocase subunit SecG
D TREPR_1497 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D TREPR_1545 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D TREPR_2352 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D TREPR_1768 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D TREPR_0615 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:tpi02030]
D TREPR_0052 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_1705 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_3059 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_1664 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_1656 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_2978 Mcp-2 K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_2941 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_2733 putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_2928 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_0699 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_0495 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_0494 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_0493 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_0266 periplasmic sugar-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D TREPR_0404 D-ribose-binding periplasmic protein K10439 rbsB; ribose transport system substrate-binding protein
D TREPR_0729 D-galactose-binding periplasmic protein (gbp) (d-galactose/d-glucose-binding protein) (ggbp) K10540 mglB; methyl-galactoside transport system substrate-binding protein
D TREPR_2972 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D TREPR_1655 response regulator receiver domain protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D TREPR_2936 purine-binding chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW
D TREPR_1661 conserved hypothetical protein K03408 cheW; purine-binding chemotaxis protein CheW
D TREPR_2971 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D TREPR_3361 chemotaxis protein Chey K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D TREPR_2970 chemotaxis protein CheX K03409 cheX; chemotaxis protein CheX
D TREPR_1659 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D TREPR_3012 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D TREPR_1658 putative MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D TREPR_3013 cheR; CheR methyltransferase, SAM-binding domain protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D TREPR_1015 putative flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D TREPR_2557 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D TREPR_2856 fliM_2; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D TREPR_1885 hypothetical protein K02416 fliM; flagellar motor switch protein FliM
D TREPR_3134 fliM_1; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D TREPR_2855 flagellar motor switch protein FliY K02417 fliN; flagellar motor switch protein FliN
D TREPR_2861 chemotaxis protein PomA K02556 motA; chemotaxis protein MotA
D TREPR_2860 chemotaxis protein MotB K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:tpi02040]
D TREPR_2559 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D TREPR_2558 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D TREPR_1015 putative flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D TREPR_2557 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D TREPR_2556 flagellar assembly protein K02411 fliH; flagellar assembly protein FliH
D TREPR_2555 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D TREPR_2554 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D TREPR_2858 fliL_1; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D TREPR_1119 fliL_2; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D TREPR_2856 fliM_2; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D TREPR_1885 hypothetical protein K02416 fliM; flagellar motor switch protein FliM
D TREPR_3134 fliM_1; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D TREPR_2855 flagellar motor switch protein FliY K02417 fliN; flagellar motor switch protein FliN
D TREPR_2854 conserved hypothetical protein K02418 fliO; flagellar protein FliO/FliZ
D TREPR_2853 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D TREPR_2852 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D TREPR_2851 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D TREPR_3866 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D TREPR_2849 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D TREPR_2850 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D TREPR_2561 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D TREPR_2560 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D TREPR_2864 flgD; flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D TREPR_2863 flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D TREPR_3479 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D TREPR_3480 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D TREPR_3481 putative flagellar protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D TREPR_1919 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D TREPR_1920 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D TREPR_1932 flagellar filament 34.5 kDa core protein (Class B) K02406 fliC; flagellin
D TREPR_1931 flagellar filament 34.5 kDa core protein (Class B) K02406 fliC; flagellin
D TREPR_0296 flagellar filament 34.5 kDa core protein (Class B) K02406 fliC; flagellin
D TREPR_1929 flagellar hook-associated protein 2 (HAP2) (Filament cap protein)(Flagellar cap protein) K02407 fliD; flagellar hook-associated protein 2
D TREPR_1165 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D TREPR_2861 chemotaxis protein PomA K02556 motA; chemotaxis protein MotA
D TREPR_2860 chemotaxis protein MotB K02557 motB; chemotaxis protein MotB
D TREPR_1355 amino acid ABC-transporter, periplasmic amino acid-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D TREPR_3818 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D TREPR_0163 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D TREPR_2469 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D TREPR_3612 RNA polymerase sigma factor RpoD (Sigma-70) K03086 rpoD; RNA polymerase primary sigma factor
D TREPR_1827 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D TREPR_2321 RNA polymerase sigma factor RpoD (Sigma-70) K03086 rpoD; RNA polymerase primary sigma factor
D TREPR_2731 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D TREPR_2845 RNA polymerase sigma-D factor K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D TREPR_0776 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:tpi04980]
D TREPR_1370 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D TREPR_0120 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:tpi01501]
D TREPR_3874 glycosyl hydrolase, family 3 K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D TREPR_1170 beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D TREPR_3667 periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D TREPR_3661 oligopeptide transport system permease protein OppB K15581 oppB; oligopeptide transport system permease protein
D TREPR_3662 oligopeptide transport system permease protein OppC K15582 oppC; oligopeptide transport system permease protein
D TREPR_3663 oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein
D TREPR_3664 oligopeptide transport ATP-binding protein AppF K10823 oppF; oligopeptide transport system ATP-binding protein
D TREPR_3614 putative membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D TREPR_2710 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D TREPR_1583 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D TREPR_2328 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D TREPR_2209 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:tpi01502]
D TREPR_0367 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D TREPR_1685 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D TREPR_0368 UDP-N-acetylmuramyl pentapeptide synthase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D TREPR_2573 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D TREPR_2221 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D TREPR_1572 carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:tpi01503]
D TREPR_2460 N-acetylmuramoyl-L-alanine amidase, family 3 K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D TREPR_1199 trypsin domain/PDZ domain protein K04771 degP; serine protease Do [EC:3.4.21.107]
D TREPR_0450 peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D TREPR_3614 putative membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D TREPR_2710 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:tpi01000]
C 01001 Protein kinases [BR:tpi01001]
D TREPR_1180 pasta domain protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D TREPR_1262 HipA domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D TREPR_2226 anti-sigma regulatory factor K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D TREPR_1586 signal transduction histidine kinase K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D TREPR_2482 two-component system sensor kinase K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3]
D TREPR_2228 sensory box histidine kinase K13533 kinE; two-component system, sporulation sensor kinase E [EC:2.7.13.3]
D TREPR_0685 histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D TREPR_0161 putative signal transduction histidine kinase, nitrogen specific, NtrB K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D TREPR_2972 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D TREPR_1655 response regulator receiver domain protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D TREPR_1054 sensory box histidine kinase/response regulator K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
D TREPR_3194 multi-sensor hybrid histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
D TREPR_2451 sensory transduction histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
D TREPR_0855 sensory transduction histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:tpi01009]
D TREPR_0608 diphosphate--fructose-6-phosphate 1-phosphotransferase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D TREPR_3196 chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 01002 Peptidases and inhibitors [BR:tpi01002]
D TREPR_0768 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D TREPR_1398 peptidase, A24 (type IV prepilin peptidase) family K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D TREPR_0937 pyrrolidone-carboxylate peptidase (5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I) (PGP-I) (Pyrase) K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
D TREPR_0218 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D TREPR_1281 gamma-glutamyl-gamma-aminobutyrate hydrolase (gamma-glu-gaba hydrolase) K07010 K07010; putative glutamine amidotransferase
D TREPR_2189 hypothetical protein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-]
D TREPR_3434 NlpC (ORF-17) K13695 nlpC; probable lipoprotein NlpC
D TREPR_3786 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D TREPR_3466 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D TREPR_1116 glmS; glutamine-fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D TREPR_0340 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D TREPR_2765 protein ThiJ K03152 thiJ; protein deglycase [EC:3.5.1.124]
D TREPR_3482 caax amino protease family K07052 K07052; CAAX protease family protein
D TREPR_1459 pepF; oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D TREPR_0613 oligoendopeptidase, PepF/M3 family K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D TREPR_1572 carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D TREPR_1016 peptidase, M16 family K06972 PITRM1; presequence protease [EC:3.4.24.-]
D TREPR_0371 putative peptidase, M16 family K07263 pqqL; zinc protease [EC:3.4.24.-]
D TREPR_1781 putative dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D TREPR_3022 Xaa-His dipeptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D TREPR_0561 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D TREPR_0173 pepT; peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D TREPR_3832 amidohydrolase K12941 abgB; aminobenzoyl-glutamate utilization protein B
D TREPR_1299 aminobenzoyl-glutamate utilization protein B K12941 abgB; aminobenzoyl-glutamate utilization protein B
D TREPR_1284 aminobenzoyl-glutamate utilization protein B K12941 abgB; aminobenzoyl-glutamate utilization protein B
D TREPR_1219 map; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D TREPR_1783 Xaa-Pro dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D TREPR_1107 peptidase, M24 family K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D TREPR_0939 putative peptidase M24 K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D TREPR_0473 putative Xaa-Pro aminopeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D TREPR_3712 Xaa-Pro aminopeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D TREPR_3021 peptidase M29, aminopeptidase II K19689 ampS; aminopeptidase [EC:3.4.11.-]
D TREPR_0049 cell division protease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D TREPR_1201 cell division protease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D TREPR_2677 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D TREPR_1199 trypsin domain/PDZ domain protein K04771 degP; serine protease Do [EC:3.4.21.107]
D TREPR_1220 putative serine protease MucD K04772 degQ; serine protease DegQ [EC:3.4.21.-]
D TREPR_2214 serine-type D-Ala-D-Ala carboxypeptidase DacC K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D TREPR_1951 clpP_2; Clp protease K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D TREPR_2599 clpP_1; Clp protease K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D TREPR_3771 lon_1; endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D TREPR_2601 lon_2; endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D TREPR_0683 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D TREPR_2210 lepB_3; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D TREPR_2488 lepB_1; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D TREPR_2487 lepB_2; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D TREPR_0060 carboxyl-protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D TREPR_0455 rhomboid family protein K07059 K07059; rhomboid family protein
D TREPR_2563 ATP-dependent protease HslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D TREPR_0123 peptidase, U32 family K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D TREPR_2524 alpha-2-macroglobulin domain protein K06894 yfhM; alpha-2-macroglobulin
D TREPR_2516 hflC; HflC protein K04087 hflC; modulator of FtsH protease HflC
D TREPR_2515 hflK; HflK protein K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:tpi01003]
D TREPR_2124 glycogen synthase (Starch [bacterial glycogen]synthase) K00703 glgA; starch synthase [EC:2.4.1.21]
D TREPR_2523 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D TREPR_1583 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D TREPR_0063 glycosyltransferase, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
D TREPR_2792 putative undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D TREPR_2534 glycosyltransferase, family 2 K16649 glft1; rhamnopyranosyl-N-acetylglucosaminyl-diphospho-decaprenol beta-1,3/1,4-galactofuranosyltransferase [EC:2.4.1.287]
D TREPR_2539 conserved hypothetical protein K16650 glft2; galactofuranosylgalactofuranosylrhamnosyl-N-acetylglucosaminyl-diphospho-decaprenol beta-1,5/1,6-galactofuranosyltransferase [EC:2.4.1.288]
D TREPR_2536 hypothetical protein K16650 glft2; galactofuranosylgalactofuranosylrhamnosyl-N-acetylglucosaminyl-diphospho-decaprenol beta-1,5/1,6-galactofuranosyltransferase [EC:2.4.1.288]
D TREPR_1988 glycosyltransferase, family 1 K22908 mggS; mannosylglucosylglycerate synthase [EC:2.4.1.-]
D TREPR_0635 glycosyltransferase family 1, candidate beta-glycosyltransferase K05841 E2.4.1.173; sterol 3beta-glucosyltransferase [EC:2.4.1.173]
D TREPR_0633 glycosyltransferase family 1, candidate beta-glycosyltransferase K05841 E2.4.1.173; sterol 3beta-glucosyltransferase [EC:2.4.1.173]
D TREPR_1628 glycosyltransferase, family 2 K13693 gpgS; glucosyl-3-phosphoglycerate synthase [EC:2.4.1.266]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:tpi01005]
D TREPR_2397 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D TREPR_0009 dTDP-rhamnosyl transferase RfbG K12991 rfbG; rhamnosyltransferase [EC:2.4.1.-]
D TREPR_2792 putative undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:tpi01011]
D TREPR_0072 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D TREPR_1995 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D TREPR_2414 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D TREPR_1066 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D TREPR_1063 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D TREPR_0367 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D TREPR_1685 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D TREPR_2242 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D TREPR_2573 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D TREPR_2221 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D TREPR_0314 undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D TREPR_3468 mviN; integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D TREPR_1583 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D TREPR_2523 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D TREPR_2328 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D TREPR_2209 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D TREPR_2214 serine-type D-Ala-D-Ala carboxypeptidase DacC K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D TREPR_1572 carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D TREPR_2189 hypothetical protein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-]
D TREPR_2920 lytic transglycosylase, catalytic K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D TREPR_1535 transglycosylase, SLT family K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D TREPR_2319 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D TREPR_2757 lipoprotein, RlpA family K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D TREPR_2460 N-acetylmuramoyl-L-alanine amidase, family 3 K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:tpi01004]
D TREPR_1279 malonyl CoA-acyl carrier protein transacylase (MCT) K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D TREPR_1280 beta-ketoacyl-acyl-carrier-protein synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D TREPR_1277 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D TREPR_1278 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D TREPR_1276 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D TREPR_0157 acyl-coenzyme A synthetase ACSM3 K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TREPR_1800 acyl-coenzyme A synthetase ACSM3 K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D TREPR_0175 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D TREPR_1173 long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D TREPR_0987 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D TREPR_1913 probable 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:tpi01008]
D TREPR_3177 (S)-2-hydroxy-acid oxidase K16422 hmo; 4-hydroxymandelate oxidase [EC:1.1.3.46]
C 01006 Prenyltransferases [BR:tpi01006]
D TREPR_0716 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D TREPR_2673 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D TREPR_2531 miaA; tRNA isopentenyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
C 01007 Amino acid related enzymes [BR:tpi01007]
D TREPR_2750 lysS; lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D TREPR_2817 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D TREPR_0553 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D TREPR_3469 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D TREPR_3576 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D TREPR_1627 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D TREPR_3443 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D TREPR_1795 methionyl-tRNA synthetase (Methionine--tRNA ligase)(MetRS) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D TREPR_2528 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D TREPR_1570 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D TREPR_3229 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D TREPR_3381 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D TREPR_2215 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D TREPR_3639 aspartyl-tRNA synthetase (Aspartate--tRNA ligase)(AspRS) K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D TREPR_2696 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D TREPR_0735 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D TREPR_1075 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D TREPR_0663 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D TREPR_0136 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D TREPR_0781 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D TREPR_1369 threonyl/alanyl tRNA synthetase, SAD K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D TREPR_0460 phenylalanyl-tRNA synthetase alpha chain (Phenylalanine--tRNA ligase alpha chain) (PheRS) K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D TREPR_0483 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D TREPR_2697 aspartate aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D TREPR_0993 aminotransferase, class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D TREPR_1185 LL-diaminopimelate aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D TREPR_0634 aminotransferase YbdL K10907 K10907; aminotransferase [EC:2.6.1.-]
D TREPR_3205 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D TREPR_3054 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D TREPR_3334 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D TREPR_3052 bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D TREPR_3389 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D TREPR_2366 nucleotidyl transferase/aminotransferase, class V K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]
D TREPR_3803 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:tpi00194]
D TREPR_1237 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D TREPR_1236 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D TREPR_1235 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D TREPR_1234 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D TREPR_1233 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D TREPR_1232 F0F1-type ATP synthase b subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D TREPR_1231 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D TREPR_1230 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:tpi03000]
D TREPR_1518 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator
D TREPR_2312 methylphosphotriester-DNA alkyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
D TREPR_0081 putative periplasmic binding proteins and sugar binding domain of the LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D TREPR_0265 putative transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D TREPR_1513 putative transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D TREPR_1972 LacI family transcriptional repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D TREPR_1351 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D TREPR_0651 transcriptional Regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D TREPR_0405 catabolite control protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D TREPR_0401 alanine racemase K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D TREPR_1317 putative GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D TREPR_1614 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D TREPR_1298 transcriptional regulator, GntR family protein K07978 plmA; GntR family transcriptional regulator
D TREPR_3566 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D TREPR_3406 transcriptional regulator, LuxR family protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D TREPR_3405 putative transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D TREPR_3605 ferric uptake regulator, Fur family K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D TREPR_3815 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D TREPR_1068 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D TREPR_1700 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D TREPR_2606 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D TREPR_0631 RRF2-family transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D TREPR_0632 transcriptional regulator, BadM/Rrf2 family K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
D TREPR_2947 cadmium efflux system accessory protein K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D TREPR_2793 regulatory protein, ArsR K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
D TREPR_2907 PadR K26739 padR; PadR family transcriptional regulator, phenolic acid-responsive transcriptional regulator
D TREPR_1942 manganese-dependent transcription regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D TREPR_3041 biotin-(acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D TREPR_0800 conserved domain protein K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D TREPR_3511 nifA_1; Nif-specific regulatory protein K02584 nifA; Nif-specific regulatory protein
D TREPR_2893 transcriptional regulator, NifA subfamily, Fis Family K02584 nifA; Nif-specific regulatory protein
D TREPR_2338 nifA_2; Nif-specific regulatory protein K02584 nifA; Nif-specific regulatory protein
D TREPR_3804 CoA-binding domain protein K01926 rex; redox-sensing transcriptional repressor
D TREPR_2728 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D TREPR_3418 putative transcriptional regulator K07726 K07726; putative transcriptional regulator
D TREPR_2616 transcriptional Regulator, XRE family K07726 K07726; putative transcriptional regulator
D TREPR_2871 helix-turn-helix domain protein K07726 K07726; putative transcriptional regulator
D TREPR_2957 transcriptional antiterminator, BglG K03488 licT; beta-glucoside operon transcriptional antiterminator
D TREPR_2966 HTH domain protein K03483 mtlR; mannitol operon transcriptional activator
D TREPR_1584 transcriptional repressor protein KorB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D TREPR_2754 chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D TREPR_0912 conserved hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D TREPR_1023 transcription factor K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D TREPR_2248 transcriptional regulator K03402 argR; transcriptional regulator of arginine metabolism
D TREPR_2768 C4 zinc finger domain protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor
D TREPR_2603 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D TREPR_2576 protein MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:tpi03021]
D TREPR_2945 DNA or RNA helicase of superfamily II K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D TREPR_1501 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D TREPR_0930 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D TREPR_0931 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D TREPR_3455 hypothetical protein K03048 rpoE; DNA-directed RNA polymerase subunit delta
D TREPR_2532 conserved domain protein K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D TREPR_3818 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D TREPR_0163 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D TREPR_2469 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D TREPR_3612 RNA polymerase sigma factor RpoD (Sigma-70) K03086 rpoD; RNA polymerase primary sigma factor
D TREPR_1827 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D TREPR_2321 RNA polymerase sigma factor RpoD (Sigma-70) K03086 rpoD; RNA polymerase primary sigma factor
D TREPR_1626 RNA polymerase sigma-24 factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D TREPR_2731 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D TREPR_2845 RNA polymerase sigma-D factor K02405 fliA; RNA polymerase sigma factor FliA
D TREPR_1755 transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D TREPR_0779 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D TREPR_0925 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D TREPR_2355 transcription antitermination protein, NusG family K02601 nusG; transcription termination/antitermination protein NusG
D TREPR_1630 Stage II sporulation protein E K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
D TREPR_2224 serine phosphatase K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
D TREPR_0688 anti-anti-sigma factor K04749 rsbV; anti-sigma B factor antagonist
D TREPR_2226 anti-sigma regulatory factor K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D TREPR_2768 C4 zinc finger domain protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor
D TREPR_2580 transcription termination factor rho (ATP-dependenthelicase rho) K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:tpi03019]
D TREPR_2689 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D TREPR_0812 beta-lactamase domain protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D TREPR_3032 conserved hypothetical protein K18682 rny; ribonucrease Y [EC:3.1.-.-]
D TREPR_2984 dead/deah box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D TREPR_2151 ATP-dependent RNA helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
D TREPR_1182 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D TREPR_1620 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D TREPR_0776 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D TREPR_1761 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D TREPR_2580 transcription termination factor rho (ATP-dependenthelicase rho) K03628 rho; transcription termination factor Rho
D TREPR_0608 diphosphate--fructose-6-phosphate 1-phosphotransferase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D TREPR_3307 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D TREPR_0312 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D TREPR_0596 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D TREPR_0669 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D TREPR_0242 putative RNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D TREPR_1737 polyA polymerase family protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D TREPR_1922 csrA; carbon storage regulator K03563 csrA; carbon storage regulator
D TREPR_1529 conserved hypothetical protein K06958 rapZ; RNase adapter protein RapZ
D TREPR_2253 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 (Helicase JA1) K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D TREPR_2639 hrpB; ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:tpi03011]
D TREPR_2339 cytidylate kinase/ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D TREPR_2670 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D TREPR_1483 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D TREPR_1500 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D TREPR_1494 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D TREPR_2685 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D TREPR_1472 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D TREPR_1491 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D TREPR_2982 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D TREPR_1476 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D TREPR_1499 rpsK; ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D TREPR_1471 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D TREPR_1498 rpsM; ribosomal protein S13p/S18e K02952 RP-S13; small subunit ribosomal protein S13
D TREPR_1490 rpsN; ribosomal protein S14p/S29e K02954 RP-S14; small subunit ribosomal protein S14
D TREPR_1760 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D TREPR_3153 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D TREPR_1486 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D TREPR_2683 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D TREPR_1481 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D TREPR_1945 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D TREPR_0998 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D TREPR_0927 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D TREPR_1480 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D TREPR_1477 rplC; ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D TREPR_1478 rplD; ribosomal protein, L4/L1 family K02926 RP-L4; large subunit ribosomal protein L4
D TREPR_1492 50S ribosomal protein L6 (BL10) K02933 RP-L6; large subunit ribosomal protein L6
D TREPR_2681 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D TREPR_0928 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D TREPR_0926 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D TREPR_0929 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D TREPR_2981 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D TREPR_1487 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D TREPR_1496 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D TREPR_1484 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D TREPR_1502 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D TREPR_1493 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D TREPR_3157 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D TREPR_1647 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D TREPR_3448 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D TREPR_1482 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D TREPR_1479 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D TREPR_1488 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D TREPR_3450 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D TREPR_0850 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D TREPR_1485 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D TREPR_1495 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D TREPR_2579 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D TREPR_0921 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D TREPR_0506 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D TREPR_1646 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D TREPR_1206 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25
D TREPR_3898 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D TREPR_3918 rrfB; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D TREPR_3901 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D TREPR_3915 rrsB; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D TREPR_3899 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D TREPR_3917 rrlB; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:tpi03009]
D TREPR_2689 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D TREPR_3043 era; GTP-binding protein Era K03595 era; GTPase
D TREPR_3451 cgtA; Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D TREPR_2768 C4 zinc finger domain protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor
D TREPR_1755 transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D TREPR_0779 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D TREPR_0925 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D TREPR_2355 transcription antitermination protein, NusG family K02601 nusG; transcription termination/antitermination protein NusG
D TREPR_3485 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D TREPR_1727 methyltransferase small K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D TREPR_0061 conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D TREPR_0270 RNA methyltransferase superfamily K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D TREPR_3794 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D TREPR_2575 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D TREPR_0293 conserved hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D TREPR_0301 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D TREPR_0717 rrmJ; ribosomal RNA large subunit methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D TREPR_0670 PUA domain protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D TREPR_3809 conserved hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D TREPR_2730 conserved hypothetical protein K25136 rlmK; 23S rRNA (guanine2069-N7)-methyltransferase [EC:2.1.1.264]
D TREPR_0499 methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D TREPR_1723 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D TREPR_1735 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D TREPR_1055 ribosomal large subunit pseudouridine synthase C K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D TREPR_2340 RNA pseudouridylate synthase family protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D TREPR_1743 ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D TREPR_1789 ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D TREPR_3488 rluD_1; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D TREPR_2415 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D TREPR_1169 rluC; ribosomal large subunit pseudouridine synthase family protein K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D TREPR_1368 rluD_2; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D TREPR_0607 RNA methyltransferase, TrmH family K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D TREPR_3155 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D TREPR_1193 conserved hypothetical protein K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D TREPR_2984 dead/deah box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D TREPR_2151 ATP-dependent RNA helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
D TREPR_2243 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D TREPR_3188 engA; ribosome-associated GTPase EngA K03977 engA; GTPase
D TREPR_0639 hflX; GTP-binding protein HflX K03665 hflX; GTPase
D TREPR_0491 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D TREPR_1504 GTP diphosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D TREPR_1757 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D TREPR_1754 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
D TREPR_3454 iojap family protein K09710 ybeB; ribosome-associated protein
D TREPR_1688 conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor
D TREPR_2729 raiA; ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
D TREPR_1069 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C 03016 Transfer RNA biogenesis [BR:tpi03016]
D TREPR_2505 rnz; ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D TREPR_2687 tRNA adenylyltransferase/tRNA cytidylyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D TREPR_1615 DHH family protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D TREPR_2817 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D TREPR_0663 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D TREPR_2528 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D TREPR_3229 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D TREPR_1795 methionyl-tRNA synthetase (Methionine--tRNA ligase)(MetRS) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D TREPR_0553 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D TREPR_3443 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D TREPR_3381 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D TREPR_0781 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D TREPR_1369 threonyl/alanyl tRNA synthetase, SAD K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D TREPR_2215 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D TREPR_0735 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D TREPR_0136 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D TREPR_1075 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D TREPR_1627 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D TREPR_1570 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D TREPR_2696 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D TREPR_0460 phenylalanyl-tRNA synthetase alpha chain (Phenylalanine--tRNA ligase alpha chain) (PheRS) K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D TREPR_0483 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D TREPR_3469 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D TREPR_3576 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D TREPR_1076 histidine triad nucleotide-binding protein 1 K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D TREPR_1941 putative methyltransferase nsun4 (Nol1/nop2/sun domainfamily member 4) K21969 NSUN3; tRNA (cytosine34-C5)-methyltransferase [EC:2.1.1.-]
D TREPR_2641 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D TREPR_1940 tRNA pseudouridine synthase A (tRNA-uridine isomeraseI) (tRNA pseudouridylate synthase I) (PSU-I) K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D TREPR_1758 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D TREPR_2794 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D TREPR_2724 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D TREPR_0491 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D TREPR_2531 miaA; tRNA isopentenyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D TREPR_1080 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D TREPR_1079 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D TREPR_3080 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D TREPR_0505 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D TREPR_2973 ribonuclease II family protein K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D TREPR_0145 3'-5' exonuclease domain protein K03684 rnd; ribonuclease D [EC:3.1.13.5]
D TREPR_3805 ABC transporter, ATP-binding protein K06020 ettA; energy-dependent translational throttle protein EttA
D TREPR_2750 lysS; lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D TREPR_3639 aspartyl-tRNA synthetase (Aspartate--tRNA ligase)(AspRS) K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D TREPR_3203 ybaK; YbaK/ebsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D TREPR_0453 tRNA-dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D TREPR_1730 miaB; tRNA-I(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D TREPR_1844 2-methylthioadenine synthetase K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D TREPR_3156 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D TREPR_0607 RNA methyltransferase, TrmH family K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D TREPR_0062 RNA methyltransferase, TrmH family, group 1 K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D TREPR_0291 RNA methyltransferase, TrmH family K03437 spoU; RNA methyltransferase, TrmH family
D TREPR_1055 ribosomal large subunit pseudouridine synthase C K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D TREPR_0375 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D TREPR_0572 adenine nucleotide alpha hydrolase ATP-binding family protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D TREPR_1808 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D TREPR_1046 4Fe-4S ferredoxin, iron-sulfur binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D TREPR_0745 4Fe-4S ferredoxin, iron-sulfur binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D TREPR_2779 4Fe-4S ferredoxin, iron-sulfur binding domain protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D TREPR_0512 uncharacterized conserved protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D TREPR_1715 tgt; tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D TREPR_2795 thiI; thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D TREPR_1202 tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D TREPR_1924 peptidase, M22 family K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D TREPR_0165 probable O-sialoglycoprotein endopeptidase (Glycoprotease) K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D TREPR_1925 conserved hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D TREPR_0573 ThiF family protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D TREPR_1761 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D TREPR_0212 putative virulence-associated protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D TREPR_0606 putative virulence-associated protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D TREPR_0324 virulence associated protein C K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
C 03012 Translation factors [BR:tpi03012]
D TREPR_1756 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D TREPR_1645 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D TREPR_0556 ABC transporter, ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D TREPR_2671 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D TREPR_1475 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D TREPR_1588 fusA_2; translation elongation factor G K02355 fusA; elongation factor G
D TREPR_2447 translation elongation factor G K02355 fusA; elongation factor G
D TREPR_2997 fusA_1; translation elongation factor G K02355 fusA; elongation factor G
D TREPR_3083 selB; selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor
D TREPR_1506 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D TREPR_2672 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D TREPR_1505 hemK; protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D TREPR_1967 pth; aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D TREPR_3255 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D TREPR_1457 efp; translation elongation factor P K02356 efp; elongation factor P
D TREPR_1067 putative lysyl-tRNA synthetase (Lysine--tRNA ligase)(LysRS) (GX) K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D TREPR_1766 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D TREPR_1030 class I peptide chain release factor K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:tpi03110]
D TREPR_2813 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D TREPR_0638 clpB; ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D TREPR_1834 negative regulator of genetic competence ClpC/MecB K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D TREPR_2600 clpX; ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D TREPR_2562 hslU; heat shock protein HslVU, ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D TREPR_3196 chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D TREPR_3307 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D TREPR_0312 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D TREPR_0596 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D TREPR_3308 molecular chaperone, DnaJ family K03686 dnaJ; molecular chaperone DnaJ
D TREPR_0311 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D TREPR_0313 grpE; co-chaperone GrpE K03687 GRPE; molecular chaperone GrpE
D TREPR_1175 putative heat shock protein K13993 HSP20; HSP20 family protein
D TREPR_3236 stress response protein K13993 HSP20; HSP20 family protein
D TREPR_2759 groS; chaperonin GroS K04078 groES; chaperonin GroES
D TREPR_1199 trypsin domain/PDZ domain protein K04771 degP; serine protease Do [EC:3.4.21.107]
D TREPR_0049 cell division protease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D TREPR_1201 cell division protease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D TREPR_1230 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D TREPR_0450 peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D TREPR_2769 peptidyl-prolyl cis-trans isomerase, FKBP-type, 22 kDa subunit K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D TREPR_3593 peptidyl-prolyl cis-trans isomerase, fkbp-type K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D TREPR_1653 foldase protein PrsA K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D TREPR_3508 trxA; thioredoxin K03671 TXN; thioredoxin
C 04131 Membrane trafficking [BR:tpi04131]
D TREPR_0612 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D TREPR_1339 hexokinase K00844 HK; hexokinase [EC:2.7.1.1]
D TREPR_2454 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D TREPR_0649 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D TREPR_3196 chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system [BR:tpi04121]
C 03051 Proteasome [BR:tpi03051]
D TREPR_3196 chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:tpi03032]
D TREPR_0598 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D TREPR_1946 DNA-binding protein HBbu K04764 ihfA; integration host factor subunit alpha
D TREPR_0277 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D TREPR_2680 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D TREPR_2320 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D TREPR_0125 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D TREPR_2684 plasmid-derived single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein) K03111 ssb; single-strand DNA-binding protein
D TREPR_0887 single-strand binding family protein K03111 ssb; single-strand DNA-binding protein
D TREPR_3821 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D TREPR_0275 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D TREPR_0682 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D TREPR_3868 putative exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D TREPR_3623 DNA polymerase III PolC-type (PolIII) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D TREPR_0945 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D TREPR_2223 DNA polymerase III domain protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D TREPR_0447 DNA polymerase III, gamma and tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D TREPR_2806 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D TREPR_3060 DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TREPR_2640 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TREPR_3463 modification methylase lladchia (adenine-specificmethyltransferase lladchia) (m.lladchia) (m.lladchi a) (m.llaii a) K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D TREPR_0282 gyrA_2; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D TREPR_0279 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D TREPR_2442 gyrA_1; DNA gyrase, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D TREPR_2445 DNA topoisomerase II (N-region) domain protein K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D TREPR_2565 topA; DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:tpi03036]
D TREPR_2689 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D TREPR_1946 DNA-binding protein HBbu K04764 ihfA; integration host factor subunit alpha
D TREPR_0277 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D TREPR_3566 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D TREPR_0109 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein
D TREPR_2342 ScpA/B protein K05896 scpA; segregation and condensation protein A
D TREPR_2341 scpB; segregation and condensation protein B K06024 scpB; segregation and condensation protein B
D TREPR_2570 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D TREPR_2209 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D TREPR_2919 ftsk/spoiiie family protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D TREPR_2574 putative cell division protein FtsL K03586 ftsL; cell division protein FtsL
D TREPR_2571 putative cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D TREPR_2572 stage V sporulation protein E K03588 ftsW; cell division protein FtsW
D TREPR_2569 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D TREPR_2460 N-acetylmuramoyl-L-alanine amidase, family 3 K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D TREPR_3614 putative membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D TREPR_2710 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D TREPR_2325 Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D TREPR_2326 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D TREPR_2327 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D TREPR_2329 mrdB; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D TREPR_2755 sporulation initiation inhibitor protein Soj K03496 parA; chromosome partitioning protein
D TREPR_0913 putative plasmid partition protein K03496 parA; chromosome partitioning protein
D TREPR_1584 transcriptional repressor protein KorB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D TREPR_2754 chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D TREPR_0912 conserved hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D TREPR_2442 gyrA_1; DNA gyrase, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D TREPR_2445 DNA topoisomerase II (N-region) domain protein K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D TREPR_1079 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D TREPR_3794 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D TREPR_2564 site-specific recombinase, phage integrase family K03733 xerC; integrase/recombinase XerC
D TREPR_2568 integrase/recombinase XerD K04763 xerD; integrase/recombinase XerD
D TREPR_2206 phage integrase family protein K04763 xerD; integrase/recombinase XerD
D TREPR_2168 Fic protein family K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
C 03400 DNA repair and recombination proteins [BR:tpi03400]
D TREPR_2311 ogt; methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D TREPR_2411 HhH-GPD family protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D TREPR_1026 endonuclease III protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D TREPR_2945 DNA or RNA helicase of superfamily II K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D TREPR_2838 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D TREPR_2347 mutT_1; MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D TREPR_2072 mutT_2; MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D TREPR_2065 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D TREPR_0625 putative MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D TREPR_1762 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D TREPR_2312 methylphosphotriester-DNA alkyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
D TREPR_2604 DNA polymerase domain protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D TREPR_0702 conserved hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D TREPR_2313 methylated-DNA--[protein]-cysteine S-methyltransferase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D TREPR_0372 DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D TREPR_2811 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D TREPR_1001 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D TREPR_2640 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TREPR_3060 DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TREPR_2582 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D TREPR_0648 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D TREPR_1101 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D TREPR_1192 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TREPR_1617 helicase, UvrD/Rep family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TREPR_0930 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D TREPR_0931 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D TREPR_1501 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D TREPR_3455 hypothetical protein K03048 rpoE; DNA-directed RNA polymerase subunit delta
D TREPR_2532 conserved domain protein K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D TREPR_1911 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D TREPR_2630 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D TREPR_2244 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2
D TREPR_2468 DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D TREPR_2466 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D TREPR_2467 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D TREPR_3821 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D TREPR_0275 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D TREPR_0682 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D TREPR_3868 putative exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D TREPR_3623 DNA polymerase III PolC-type (PolIII) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D TREPR_0945 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D TREPR_2223 DNA polymerase III domain protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D TREPR_0447 DNA polymerase III, gamma and tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D TREPR_0125 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D TREPR_2684 plasmid-derived single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein) K03111 ssb; single-strand DNA-binding protein
D TREPR_0887 single-strand binding family protein K03111 ssb; single-strand DNA-binding protein
D TREPR_3463 modification methylase lladchia (adenine-specificmethyltransferase lladchia) (m.lladchia) (m.lladchi a) (m.llaii a) K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D TREPR_2344 protein RecA (Recombinase A) K03553 recA; recombination protein RecA
D TREPR_1829 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D TREPR_1809 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D TREPR_2937 crossover junction endodeoxyribonuclease RuvC (Hollidayjunction nuclease ruvC) (Holliday junction resolvase ruvC) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D TREPR_2605 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D TREPR_0731 nuclease sbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50
D TREPR_0730 DNA repair exonuclease, SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D TREPR_3200 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D TREPR_0274 RecF protein K03629 recF; DNA replication and repair protein RecF
D TREPR_3819 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D TREPR_3635 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D TREPR_1003 putative recombination protein O K03584 recO; DNA repair protein RecO (recombination protein O)
D TREPR_0449 recR; recombination protein RecR K06187 recR; recombination protein RecR
D TREPR_2933 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D TREPR_1818 putative UvrD/REP helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D TREPR_0282 gyrA_2; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D TREPR_0279 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D TREPR_2565 topA; DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D TREPR_1946 DNA-binding protein HBbu K04764 ihfA; integration host factor subunit alpha
D TREPR_1182 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D TREPR_1620 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D TREPR_0039 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D TREPR_2028 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D TREPR_0903 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D TREPR_0683 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D TREPR_3877 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7]
D TREPR_0904 DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D TREPR_2029 error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D TREPR_2983 putative RecA regulator RecX K03565 recX; regulatory protein
D TREPR_2608 probable ATP-dependent helicase YoaA K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D TREPR_3178 vitamin B12-dependent ribonucleotide reductase (Ribonucleoside-diphosphate reductase NrdJ) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D TREPR_3811 DHH superfamily protein, subfamily 1 K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D TREPR_1836 DHH family protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:tpi03029]
D TREPR_1756 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D TREPR_1645 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D TREPR_2671 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D TREPR_1475 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D TREPR_1588 fusA_2; translation elongation factor G K02355 fusA; elongation factor G
D TREPR_2447 translation elongation factor G K02355 fusA; elongation factor G
D TREPR_2997 fusA_1; translation elongation factor G K02355 fusA; elongation factor G
D TREPR_3043 era; GTP-binding protein Era K03595 era; GTPase
D TREPR_3469 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D TREPR_3229 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D TREPR_3381 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D TREPR_0735 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D TREPR_3443 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D TREPR_3637 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D TREPR_3638 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D TREPR_0665 putative aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D TREPR_1941 putative methyltransferase nsun4 (Nol1/nop2/sun domainfamily member 4) K21969 NSUN3; tRNA (cytosine34-C5)-methyltransferase [EC:2.1.1.-]
D TREPR_0125 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D TREPR_2684 plasmid-derived single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein) K03111 ssb; single-strand DNA-binding protein
D TREPR_0887 single-strand binding family protein K03111 ssb; single-strand DNA-binding protein
D TREPR_2632 yaeT; outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D TREPR_3307 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D TREPR_0312 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D TREPR_0313 grpE; co-chaperone GrpE K03687 GRPE; molecular chaperone GrpE
D TREPR_0596 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D TREPR_2759 groS; chaperonin GroS K04078 groES; chaperonin GroES
D TREPR_3308 molecular chaperone, DnaJ family K03686 dnaJ; molecular chaperone DnaJ
D TREPR_0311 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D TREPR_2794 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D TREPR_2724 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D TREPR_0503 inner membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D TREPR_3196 chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:tpi02000]
D TREPR_2931 ABC-type multidrug/protein/lipid transport system, ATPase component K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D TREPR_2666 MDR-type ABC transporter K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D TREPR_2667 ABC-type multidrug/protein/lipid transport system, ATPase component K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D TREPR_2930 ABC-type multidrug/protein/lipid transport system, ATPase component K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D TREPR_3742 wlab protein K24846 pglK; ATP-binding cassette, subfamily B, bacterial PglK [EC:7.5.2.-]
D TREPR_1378 ABC-type multidrug/protein/lipid transport system, ATPase component K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D TREPR_1379 ABC-type multidrug/protein/lipid transport system, ATPase component K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D TREPR_0726 lipid A export ATP-binding/permease protein MsbA K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D TREPR_0255 sulfate-binding protein (Sulfate starvation-induced protein2) (SSI2) K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D TREPR_0254 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D TREPR_0253 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D TREPR_0252 sulfate/thiosulfate import ATP-binding protein CysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D TREPR_2910 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D TREPR_1982 iron ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D TREPR_1974 conserved hypothetical ABC transporter periplasmic solute-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D TREPR_1526 conserved hypothetical ABC transporter periplasmic solute-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D TREPR_1511 putative ABC transporter, substrate binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D TREPR_3035 extracellular solute-binding protein, family 1 K02012 afuA; iron(III) transport system substrate-binding protein
D TREPR_0283 putative iron ABC transporter, solute-binding lipoprotein K02012 afuA; iron(III) transport system substrate-binding protein
D TREPR_0657 iron ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D TREPR_1981 ABC transporter permease protein K02011 afuB; iron(III) transport system permease protein
D TREPR_1976 ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D TREPR_1527 ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D TREPR_3037 Fe3+ ABC transporter permease K02011 afuB; iron(III) transport system permease protein
D TREPR_1510 ABC transporter permease protein K02011 afuB; iron(III) transport system permease protein
D TREPR_0285 putative ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D TREPR_0658 iron(III) dicitrate transport ATP-binding protein FecE K02011 afuB; iron(III) transport system permease protein
D TREPR_1980 Fe(3+) ions import ATP-binding protein FbpC K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D TREPR_1509 Fe(3+) ions import ATP-binding protein FbpC K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D TREPR_3036 Fe(3+) ions import ATP-binding protein FbpC K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D TREPR_0284 sulfate/thiosulfate import ATP-binding protein CysA 2 (Sulfate-transporting ATPase 2) K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D TREPR_0659 spermidine/putrescine ABC transporter ATP-binding subunit K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D TREPR_1528 tobe domain family K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D TREPR_1975 tobe domain family K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D TREPR_3219 thiamine-binding periplasmic protein K02064 thiB; thiamine transport system substrate-binding protein
D TREPR_3220 abc transporter integral membrane protein K02063 thiP; thiamine transport system permease protein
D TREPR_3221 Fe(3+) ions import ATP-binding protein FbpC K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D TREPR_1465 spermidine/putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D TREPR_0570 spermidine/putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D TREPR_1466 ornithine carbamoyltransferase K11070 potC; spermidine/putrescine transport system permease protein
D TREPR_0569 spermidine/putrescine transport system permease protein PotC K11070 potC; spermidine/putrescine transport system permease protein
D TREPR_1467 spermidine/putrescine transport system permease protein PotB K11071 potB; spermidine/putrescine transport system permease protein
D TREPR_0568 spermidine/putrescine transport system permease protein PotB K11071 potB; spermidine/putrescine transport system permease protein
D TREPR_1468 spermidine/putrescine ABC transporter ATP-binding subunit K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D TREPR_0567 spermidine/putrescine import ATP-binding protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D TREPR_0084 PotD protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D TREPR_0087 ABC transporter, permease protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D TREPR_0086 PotB protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D TREPR_0085 spermidine/putrescine import ATP-binding protein PotA K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D TREPR_2553 putative sulfonate/nitrate transport system substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D TREPR_2135 hypothetical protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D TREPR_0427 NMT1/THI5 domain protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D TREPR_0429 ABC transporter, permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D TREPR_0170 taurine transport system permease protein TauC K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D TREPR_2137 taurine ABC transporter, permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D TREPR_2552 putative ABC transporter, permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D TREPR_0428 ABC transporter, permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D TREPR_2551 aliphatic sulfonates import ATP-binding protein SsuB 1 K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D TREPR_0171 nitrate transport ATP-binding protein NrtC K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D TREPR_2138 taurine import ATP-binding protein TauB K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D TREPR_0430 taurine import ATP-binding protein TauB K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D TREPR_0108 multiple sugar-binding transport ATP-binding protein MsmK K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D TREPR_0220 maltose-binding protein K25086 musE; maltose transport system substrate-binding protein
D TREPR_0221 ABC-type sugar transport system, permease component K25087 musF; maltose transport system permease protein
D TREPR_0222 sugar permease K25088 musG; maltose transport system permease protein
D TREPR_1442 putative bacterial extracellular solute-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D TREPR_2003 putative sugar ABC transporter K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D TREPR_1610 putative extracellular solute-binding protein, family 1 K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D TREPR_1601 putative bacterial extracellular solute-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D TREPR_3845 putative sugar ABC-transporter, sugar-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D TREPR_1602 sugar ABC transporter permease K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D TREPR_1443 sugar ABC transporter permease K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D TREPR_1609 sugar ABC transporter permease K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D TREPR_3844 ABC transporter, permease protein K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D TREPR_1603 ABC transporter, permease protein K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D TREPR_1444 sugar ABC transporter permease K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D TREPR_1608 sugar ABC transporter permease K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D TREPR_3843 ABC transporter, permease protein K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D TREPR_2989 extracellular solute-binding protein family 1 K10188 lacE; lactose/L-arabinose transport system substrate-binding protein
D TREPR_2988 ABC transporter, permease protein K10189 lacF; lactose/L-arabinose transport system permease protein
D TREPR_2987 ABC transporter, permease protein K10190 lacG; lactose/L-arabinose transport system permease protein
D TREPR_0729 D-galactose-binding periplasmic protein (gbp) (d-galactose/d-glucose-binding protein) (ggbp) K10540 mglB; methyl-galactoside transport system substrate-binding protein
D TREPR_0727 galactoside transport system permease protein MglC K10541 mglC; methyl-galactoside transport system permease protein
D TREPR_0728 galactose/methyl galactoside import ATP-binding protein MglA K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D TREPR_3003 D-xylose-binding protein K10543 xylF; D-xylose transport system substrate-binding protein
D TREPR_3001 ABC transporter K10546 chvE; putative multiple sugar transport system substrate-binding protein
D TREPR_2999 L-arabinose ABC transporter K10547 gguB; putative multiple sugar transport system permease protein
D TREPR_3000 xylose import ATP-binding protein XylG K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D TREPR_0266 periplasmic sugar-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D TREPR_0404 D-ribose-binding periplasmic protein K10439 rbsB; ribose transport system substrate-binding protein
D TREPR_0267 ribose transport system permease protein RbsC K10440 rbsC; ribose transport system permease protein
D TREPR_0403 ribose transport system permease protein RbsC K10440 rbsC; ribose transport system permease protein
D TREPR_0268 ribose import ATP-binding protein RbsA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D TREPR_0402 ribose import ATP-binding protein RbsA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D TREPR_1521 putative sugar ABC-transporter, sugar-binding protein K17213 K17213; inositol transport system substrate-binding protein
D TREPR_1520 ribose transport system permease protein RbsC K17214 K17214; inositol transport system permease protein
D TREPR_1519 ribose import ATP-binding protein RbsA K17215 K17215; inositol transport system ATP-binding protein
D TREPR_3328 glycerol-3-phosphate ABC transporter substarate-binding protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D TREPR_3326 glycerol-3-phosphate ABC transporter K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D TREPR_3327 sugar permease K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D TREPR_3531 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D TREPR_1253 membrane protein, Bmp family K07335 bmpA; basic membrane protein A and related proteins
D TREPR_1252 membrane protein, Bmp family K07335 bmpA; basic membrane protein A and related proteins
D TREPR_3533 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein
D TREPR_3534 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein
D TREPR_3532 ribose import ATP-binding protein RbsA K23537 nupA; general nucleoside transport system ATP-binding protein
D TREPR_0233 MemBrane lipoprotein TpN38(b) K23510 rfuA; riboflavin transport system substrate-binding protein
D TREPR_0235 branched-chain amino acid ABC transporter, permease protein K23511 rfuC; riboflavin transport system permease protein
D TREPR_0236 ABC transporter, permease protein K23512 rfuD; riboflavin transport system permease protein
D TREPR_0234 ribose import ATP-binding protein RbsA 1 K23513 rfuB; riboflavin transport system ATP-binding protein
D TREPR_1052 putative lipoprotein K10555 lsrB; AI-2 transport system substrate-binding protein
D TREPR_0794 Mce-like protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D TREPR_0796 ABC transporter permease protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D TREPR_0795 putative ABC transporter, ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D TREPR_2507 putative bacterial extracellular solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D TREPR_2303 putative bacterial extracellular solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D TREPR_1708 putative bacterial extracellular solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D TREPR_0118 putative substrate binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D TREPR_2508 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein
D TREPR_2509 ABC transporter, permease protein K02026 ABC.MS.P1; multiple sugar transport system permease protein
D TREPR_3581 ABC transporter integral membrane protein K02057 ABC.SS.P; simple sugar transport system permease protein
D TREPR_3580 ABC transporter integral membrane protein K02057 ABC.SS.P; simple sugar transport system permease protein
D TREPR_3579 rbsA; ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, ATP-binding protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D TREPR_0963 glutamine-binding protein (GlnBP) K10039 peb1A; aspartate/glutamate/glutamine transport system substrate-binding protein
D TREPR_0965 polar amino acid ABC transporter, inner membrane subunit K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein
D TREPR_0964 glutamine ABC transporter, permease/substrate-binding protein K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein
D TREPR_0962 glutamine transport ATP-binding protein GlnQ K10041 peb1C; aspartate/glutamate/glutamine transport system ATP-binding protein [EC:7.4.2.1]
D TREPR_1355 amino acid ABC-transporter, periplasmic amino acid-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D TREPR_1354 L-cystine transport system permease protein TcyB K10009 tcyB; L-cystine transport system permease protein
D TREPR_1353 L-cystine import ATP-binding protein TcyN K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D TREPR_3345 conserved hypothetical protein K16957 tcyK; L-cystine transport system substrate-binding protein
D TREPR_3339 bacterial extracellular solute-binding protein, family 3 K16957 tcyK; L-cystine transport system substrate-binding protein
D TREPR_3340 ABC-type amino acid transport system, permease component K16958 tcyL; L-cystine transport system permease protein
D TREPR_3346 ABC-type amino acid transport system, permease component K16958 tcyL; L-cystine transport system permease protein
D TREPR_3344 ABC-type amino acid transport system, permease component K16959 tcyM; L-cystine transport system permease protein
D TREPR_3338 ABC-type amino acid transport system, permease component K16959 tcyM; L-cystine transport system permease protein
D TREPR_3343 L-cystine import ATP-binding protein TcyN K16960 tcyN; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D TREPR_3337 L-cystine import ATP-binding protein TcyN K16960 tcyN; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D TREPR_0723 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family K17077 artQ; arginine/lysine/histidine transport system permease protein
D TREPR_0724 glutamine transport ATP-binding protein GlnQ K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D TREPR_0185 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D TREPR_1122 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D TREPR_0444 receptor family ligand-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D TREPR_0432 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D TREPR_1123 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D TREPR_0442 putative inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D TREPR_0433 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D TREPR_1124 high-affinity branched-chain amino acid transport system permease protein LivM K01998 livM; branched-chain amino acid transport system permease protein
D TREPR_0443 putative inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D TREPR_0434 high-affinity branched chain amino acid ABC transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D TREPR_1125 branched-chain amino acid ABC transporter K01995 livG; branched-chain amino acid transport system ATP-binding protein
D TREPR_0440 branched-chain amino acid transport ATP-binding protein LivG K01995 livG; branched-chain amino acid transport system ATP-binding protein
D TREPR_0435 high affinity branched-chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D TREPR_1126 branched-chain amino acid ABC transporter K01996 livF; branched-chain amino acid transport system ATP-binding protein
D TREPR_0441 high affinity branched-chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D TREPR_0436 high-affinity branched-chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D TREPR_2332 nlpa lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D TREPR_2727 lipoprotein, nlpa family K02073 metQ; D-methionine transport system substrate-binding protein
D TREPR_3507 D-methionine transport system permease protein MetI K02072 metI; D-methionine transport system permease protein
D TREPR_0832 D-methionine transport system permease protein MetI K02072 metI; D-methionine transport system permease protein
D TREPR_2333 D-methionine transport system permease protein MetI K02072 metI; D-methionine transport system permease protein
D TREPR_3506 methionine import ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein
D TREPR_0833 methionine import ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein
D TREPR_2334 methionine import ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein
D TREPR_1694 ABC transporter, substrate-binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein
D TREPR_1695 ABC transporter, permease protein K05832 K05832; putative tryptophan/tyrosine transport system permease protein
D TREPR_1696 ABC transporter, ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein
D TREPR_3088 probable amino-acid ABC transporter,substrate-binding protein K16961 yxeM; putative S-methylcysteine transport system substrate-binding protein
D TREPR_3087 L-cystine transport system permease protein TcyB K16962 yxeN; putative S-methylcysteine transport system permease protein
D TREPR_3089 L-cystine import ATP-binding protein TcyN K16963 yxeO; putative S-methylcysteine transport system ATP-binding protein
D TREPR_0955 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D TREPR_3722 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D TREPR_3721 L-cystine transport system permease protein TcyL K02029 ABC.PA.P; polar amino acid transport system permease protein
D TREPR_0954 L-cystine transport system permease protein TcyB K02029 ABC.PA.P; polar amino acid transport system permease protein
D TREPR_3720 ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D TREPR_0953 ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D TREPR_3667 periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D TREPR_3661 oligopeptide transport system permease protein OppB K15581 oppB; oligopeptide transport system permease protein
D TREPR_3662 oligopeptide transport system permease protein OppC K15582 oppC; oligopeptide transport system permease protein
D TREPR_3663 oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein
D TREPR_3664 oligopeptide transport ATP-binding protein AppF K10823 oppF; oligopeptide transport system ATP-binding protein
D TREPR_3546 putative extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_1955 ABC transporter peptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_1780 bacterial extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_2433 putative ABC transporter component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_2432 putative dipeptide-binding abc transporter protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_1332 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_0936 putative bacterial extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_0830 OppA1 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_1533 putative transporter K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_3270 peptide/opine/nickel ABC transporter K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_2131 oligopeptide ABC transporter, oligopeptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_0707 dipeptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_0480 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_0671 putative ABC transporter peptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_3026 oligopeptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_3027 oligopeptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_3139 bacterial extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_1377 putative oligopeptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D TREPR_3542 probable peptide ABC transporter permease protein y4tP K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_0703 inner membrane ABC transporter permease protein YddR K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_1956 gsiC; glutathione ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_1785 oligopeptide transport system permease protein AppB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_2431 ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_1376 probable peptide ABC transporter permease protein y4tP K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_1333 ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_0934 probable peptide ABC transporter permease protein y4tP K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_0825 oligopeptide transport system permease protein OppB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_1532 oligopeptide transport system permease protein AppB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_3269 ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_2130 oligopeptide transport system permease protein AppB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_3028 oligopeptide transport system permease protein AppB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_0479 ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_0672 oligopeptide transport system permease protein AppB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D TREPR_1957 glutathione transport system permease protein GsiD K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TREPR_1784 oligopeptide transport system permease protein AppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TREPR_2430 glutathione transport system permease protein GsiD K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TREPR_1375 dipeptide transport system permease protein DppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TREPR_1334 ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TREPR_0826 glutathione transport system permease protein GsiD K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TREPR_3268 ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TREPR_2129 oligopeptide transport system permease protein AppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TREPR_3029 glutathione transport system permease protein GsiD K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TREPR_0704 glutathione transport system permease protein GsiD K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TREPR_0935 glutathione transport system permease protein GsiD K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TREPR_0673 glutathione transport system permease protein GsiD K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TREPR_0478 oligopeptide transport system permease protein AppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D TREPR_3543 glutathione import ATP-binding protein GsiA K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_1531 peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_0933 oligopeptide transport ATP-binding protein AppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_0705 oligopeptide transport ATP-binding protein OppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_1374 oligopeptide transport ATP-binding protein AppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_1958 oligopeptide transport ATP-binding protein OppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_1787 oligopeptide transport ATP-binding protein AppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_0827 dipeptide transport ATP-binding protein DppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_3267 oligopeptide/dipeptide ABC transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_3295 glutathione import ATP-binding protein GsiA K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_0674 oligopeptide transport ATP-binding protein OppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_0477 dipeptide transport ATP-binding protein DppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_2429 dipeptide transport ATP-binding protein DppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_2128 dipeptide transport ATP-binding protein DppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D TREPR_0706 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D TREPR_1959 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D TREPR_0932 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D TREPR_3031 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D TREPR_2428 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D TREPR_1373 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D TREPR_0476 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D TREPR_2127 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D TREPR_1530 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D TREPR_0675 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D TREPR_1786 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D TREPR_3618 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D TREPR_3273 Fe3+-siderophore ABC transporter, periplasmic Fe3+-siderophore-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D TREPR_1672 iron(III) dicitrate transport ATP-binding protein FecE K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D TREPR_1669 iron(III) dicitrate transport ATP-binding protein FecE K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D TREPR_3277 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D TREPR_1130 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D TREPR_3616 HmuU protein K02015 ABC.FEV.P; iron complex transport system permease protein
D TREPR_3272 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D TREPR_1671 HmuU protein K02015 ABC.FEV.P; iron complex transport system permease protein
D TREPR_3276 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D TREPR_1129 iron compounds ABC transporter, permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D TREPR_3617 hemin import ATP-binding protein HmuV K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D TREPR_1128 hemin import ATP-binding protein HmuV K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D TREPR_3271 ferrichrome transport ATP-binding protein FhuC K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D TREPR_1670 hemin import ATP-binding protein HmuV K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D TREPR_3275 iron(III) dicitrate transport ATP-binding protein FecE K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D TREPR_0515 periplasmic binding protein K25034 btuF; cobalamin transport system substrate-binding protein
D TREPR_0538 periplasmic binding protein K25034 btuF; cobalamin transport system substrate-binding protein
D TREPR_0532 HmuU protein K25027 btuC; cobalamin transport system permease protein
D TREPR_0539 HmuU protein K25027 btuC; cobalamin transport system permease protein
D TREPR_0533 ferric enterobactin transport ATP-binding protein FepC K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D TREPR_0540 ferric enterobactin transport ATP-binding protein FepC K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D TREPR_3183 adhesion protein K09815 znuA; zinc transport system substrate-binding protein
D TREPR_3185 ABC-type transport system, permease component K09816 znuB; zinc transport system permease protein
D TREPR_3184 zinc import ATP-binding protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D TREPR_3293 cbiQ; cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D TREPR_3292 cobalamin K02007 cbiM; cobalt/nickel transport system permease protein
D TREPR_3294 cobalt import ATP-binding protein CbiO 2 K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D TREPR_3762 conserved hypothetical protein K16924 mtsT; energy-coupling factor transport system substrate-specific component
D TREPR_3129 putative cobalt transport permease, CbiQ family K16785 ecfT; energy-coupling factor transport system permease protein
D TREPR_3760 cobalt transport protein superfamily K16785 ecfT; energy-coupling factor transport system permease protein
D TREPR_3130 cobalt import ATP-binding protein CbiO 2 K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D TREPR_3761 putative ABC transporter, ATP-binding protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D TREPR_2369 ABC transporter, permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein
D TREPR_2537 O-antigen export system permease protein RfbA K09690 wzm; homopolymeric O-antigen transport system permease protein
D TREPR_2371 ABC transporter, ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D TREPR_2538 teichoic acids export ATP-binding protein TagH (Teichoicacid-transporting ATPase) K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D TREPR_1763 putative permease, YjgP/YjgQ family K07091 lptF; lipopolysaccharide export system permease protein
D TREPR_1764 putative permease, YjgP/YjgQ family K11720 lptG; lipopolysaccharide export system permease protein
D TREPR_3017 ABC transporter, ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D TREPR_2503 ABC transporter permease protein K25151 gldF; gliding motility-associated transport system permease protein
D TREPR_2504 ABC-type multidrug transport system, ATPase component K25152 gldA; gliding motility-associated transport system ATP-binding protein
D TREPR_2502 hypothetical protein K25153 gldG; gliding motility-associatede transport system auxiliary component
D TREPR_1772 putative lipoprotein releasing system, permease protein K09808 lolC_E; lipoprotein-releasing system permease protein
D TREPR_1770 putative lipoprotein releasing system, permease protein K09808 lolC_E; lipoprotein-releasing system permease protein
D TREPR_1771 lipoprotein-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D TREPR_2307 ABC transporter family protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D TREPR_2306 daunorubicin resistance ATP-binding protein DrrA K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D TREPR_1453 permease domain protein K02004 ABC.CD.P; putative ABC transport system permease protein
D TREPR_1452 ABC transporter permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D TREPR_1667 ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D TREPR_2548 efflux ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D TREPR_1454 macrolide export ATP-binding/permease protein MacB 1/2 K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D TREPR_1666 macrolide export ATP-binding/permease protein MacB K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D TREPR_2546 macrolide export ATP-binding/permease protein MacB K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D TREPR_3318 citrate transporter family protein K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D TREPR_3444 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump
D TREPR_1021 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D TREPR_0119 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D TREPR_3641 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D TREPR_0802 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D TREPR_3572 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D TREPR_2706 Na+-driven multidrug efflux pump K26937 dinF; MATE family, multidrug efflux pump
D TREPR_1247 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D TREPR_2823 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D TREPR_3018 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D TREPR_1569 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D TREPR_0733 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D TREPR_2744 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D TREPR_3789 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D TREPR_1573 transporter, major facilitator family K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D TREPR_3136 efflux transporter protein K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D TREPR_3189 ptsP_1; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D TREPR_2962 ptsP_2; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D TREPR_2950 ptsP_3; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D TREPR_0463 ptsP_4; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D TREPR_2967 phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D TREPR_0464 phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D TREPR_0686 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D TREPR_2951 phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D TREPR_2954 PTS system beta-glucoside-specific EIIBCA component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D TREPR_0489 PTS system, IIA component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D TREPR_2965 pts system mannitol-specific eiicba component K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197]
D TREPR_2968 pts system mannitol-specific eiicba component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D TREPR_0466 lichenan-specific phosphotransferase enzyme iia component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D TREPR_0467 lichenan-specific phosphotransferase enzyme iib component (pts system lichenan-specific eiib component) (eiib-lic) K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D TREPR_0468 PTS system, IIc component K02761 celB; cellobiose PTS system EIIC component
D TREPR_1145 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 domain protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D TREPR_1779 DNA-binding protein/PTS system, IIA component K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D TREPR_0959 PTS system IIA component, fructose subfamily K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D TREPR_3512 amt; ammonium transporter K03320 amt; ammonium transporter, Amt family
D TREPR_0122 von Willebrand factor type A domain protein K07114 yfbK; Ca-activated chloride channel homolog
D TREPR_3261 von Willebrand factor, type A K07114 yfbK; Ca-activated chloride channel homolog
D TREPR_3260 VWA domain protein K07114 yfbK; Ca-activated chloride channel homolog
D TREPR_1846 FdhC protein K21993 fdhC; formate transporter
D TREPR_1118 MscS Mechanosensitive ion channel K16052 ynaI; MscS family membrane protein
D TREPR_3672 mgtE; magnesium transporter K06213 mgtE; magnesium transporter
D TREPR_2861 chemotaxis protein PomA K02556 motA; chemotaxis protein MotA
D TREPR_2860 chemotaxis protein MotB K02557 motB; chemotaxis protein MotB
D TREPR_3370 biopolymer transport protein K03561 exbB; biopolymer transport protein ExbB
D TREPR_3372 putative biopolymer transport ExbD protein K03559 exbD; biopolymer transport protein ExbD
D TREPR_3371 TolR protein K03559 exbD; biopolymer transport protein ExbD
D TREPR_0490 corA; magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter
D TREPR_1078 putative CrcB protein K06199 crcB; fluoride exporter
D TREPR_2152 conserved hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D TREPR_2073 aminotransferase class-III K03699 tlyC; magnesium and cobalt exporter, CNNM family
D TREPR_0548 TonB-dependent receptor plug domain protein K16092 btuB; vitamin B12 transporter
D TREPR_0518 putative outer membrane protein K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D TREPR_1133 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D TREPR_2712 outer membrane efflux protein K12538 hasF; outer membrane protein, type I secretion system
D TREPR_0192 putative ClpX, ATPase regulatory subunit K01991 wza; polysaccharide biosynthesis/export protein
D TREPR_3726 putative polysaccharide biosynthesis/export domain protein K01991 wza; polysaccharide biosynthesis/export protein
D TREPR_0356 hypothetical protein K01991 wza; polysaccharide biosynthesis/export protein
D TREPR_2632 yaeT; outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D TREPR_0101 hypothetical protein K21449 ata; trimeric autotransporter adhesin
D TREPR_0750 putative outer membrane autotransporter barrel domain protein K21449 ata; trimeric autotransporter adhesin
D TREPR_3016 conserved hypothetical protein K09774 lptA; lipopolysaccharide export system protein LptA
D TREPR_1689 hemolysin C K06189 corC; hemolysin (HlyC) family protein
D TREPR_3239 murein hydrolase exporter K06518 cidA; holin-like protein
D TREPR_1564 putative amino acid transporter K11736 proY; proline-specific permease ProY
D TREPR_0853 zinc transporter, ZIP family K07238 TC.ZIP; zinc transporter, ZIP family
D TREPR_3535 drug/metabolite transporter, DMT family K08978 TC.BAT1; bacterial/archaeal transporter family protein
D TREPR_2443 permease, GntP family K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D TREPR_3458 putP; sodium/proline symporter K11928 putP; sodium/proline symporter
D TREPR_1358 nhaC; Na+/H+ antiporter NhaC K03315 nhaC; Na+:H+ antiporter, NhaC family
D TREPR_0681 Na+/H+ antiporter K26730 napA; Na+:H+ antiporter
D TREPR_3241 Trk system potassium uptake protein TrkH K03498 trkH; trk/ktr system potassium uptake protein
D TREPR_3242 Trk system potassium uptake protein TrkA K03499 trkA; trk/ktr system potassium uptake protein
D TREPR_3878 Cl-channel, voltage-gated family protein K03281 clcA; chloride channel protein, CIC family
D TREPR_3383 chromate transport protein K07240 chrA; chromate transporter
D TREPR_3382 chrA; chromate transport protein K07240 chrA; chromate transporter
D TREPR_2946 sulfate permease K03321 TC.SULP; sulfate permease, SulP family
D TREPR_0592 trap dicarboxylate transporter, dctm subunit K21393 yiaN; TRAP-type transport system large permease protein
D TREPR_0593 putative tripartite ATP-independent periplasmic transporter, DctQ component K21394 yiaM; TRAP-type transport system small permease protein
D TREPR_1683 putative trap dicarboxylate transporter-dctp subunit K21395 yiaO; TRAP-type transport system periplasmic protein
D TREPR_0594 putative trap dicarboxylate transporter, dctp subunit K21395 yiaO; TRAP-type transport system periplasmic protein
D TREPR_3563 putative conserved hypothetical integral membrane protein K03324 yjbB; phosphate:Na+ symporter
D TREPR_0637 bile acid:sodium symporter K03325 ACR3; arsenite transporter
D TREPR_3468 mviN; integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D TREPR_0798 branched-chain amino acid transport protein AzlC K26605 azlC; branched chain amino acid efflux pump
D TREPR_0797 branched-chain amino acid transport K26606 azlD; branched chain amino acid efflux pump
D TREPR_0574 putative membrane protein K09125 yhhQ; queuosine precursor transporter
D TREPR_2572 stage V sporulation protein E K03588 ftsW; cell division protein FtsW
D TREPR_1449 high-affinity iron permease K07243 FTR; high-affinity iron transporter
D TREPR_1450 34 kDa membrane antigen (Pathogen-specific membraneantigen) K07230 p19; periplasmic iron binding protein
D TREPR_3544 high-affinity nickel-transporter K08970 rcnA; nickel/cobalt transporter (NicO) family protein
D TREPR_1131 TonB family C-domain protein K03832 tonB; periplasmic protein TonB
D TREPR_3373 TonB protein K03832 tonB; periplasmic protein TonB
D TREPR_0519 putative TonB-dependent receptor K03832 tonB; periplasmic protein TonB
D TREPR_2444 V-type H(+)-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D TREPR_1675 oxaloacetate decarboxylase, subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D TREPR_1676 oadA; oxaloacetate decarboxylase alpha subunit K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D TREPR_1677 sodium pump decarboxylase, gamma subunit K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma
D TREPR_0230 cytochrome c biogenesis protein K06196 ccdA; cytochrome c-type biogenesis protein
D TREPR_3614 putative membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D TREPR_2710 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D TREPR_0627 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D TREPR_1970 MgtC/SapB transporter K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
C 02044 Secretion system [BR:tpi02044]
D TREPR_2712 outer membrane efflux protein K12538 hasF; outer membrane protein, type I secretion system
D TREPR_1397 bacterial type II and III secretion system protein K02453 gspD; general secretion pathway protein D
D TREPR_1396 general secretion pathway protein E (Type II traffic warden ATPase) K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D TREPR_1394 gspG; general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D TREPR_1398 peptidase, A24 (type IV prepilin peptidase) family K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D TREPR_1395 bacterial type II secretion system protein F domain protein K02653 pilC; type IV pilus assembly protein PilC
D TREPR_2493 conserved hypothetical protein K08086 fimV; pilus assembly protein FimV
D TREPR_3820 yggt family protein K02221 yggT; YggT family protein
D TREPR_2477 CMP/dCMP deaminase, zinc-binding protein K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D TREPR_3484 putative ComE protein K02238 comEC; competence protein ComEC
D TREPR_2678 conserved hypothetical protein K02241 comFB; competence protein ComFB
D TREPR_0693 conserved hypothetical protein K02241 comFB; competence protein ComFB
D TREPR_3866 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D TREPR_2849 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D TREPR_2850 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D TREPR_3159 FlhB domain protein K04061 flhB2; flagellar biosynthesis protein
D TREPR_2558 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D TREPR_2556 flagellar assembly protein K02411 fliH; flagellar assembly protein FliH
D TREPR_2555 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D TREPR_2855 flagellar motor switch protein FliY K02417 fliN; flagellar motor switch protein FliN
D TREPR_2854 conserved hypothetical protein K02418 fliO; flagellar protein FliO/FliZ
D TREPR_2853 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D TREPR_2852 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D TREPR_2851 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D TREPR_2352 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D TREPR_1546 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D TREPR_0924 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D TREPR_1547 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D TREPR_1144 translocase K03075 secG; preprotein translocase subunit SecG
D TREPR_1497 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D TREPR_0615 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D TREPR_1768 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D TREPR_1545 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D TREPR_0503 inner membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
C 02042 Bacterial toxins [BR:tpi02042]
D TREPR_2152 conserved hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D TREPR_2073 aminotransferase class-III K03699 tlyC; magnesium and cobalt exporter, CNNM family
D TREPR_3807 hemolysin-3 K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:tpi02022]
D TREPR_1586 signal transduction histidine kinase K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D TREPR_2704 transcriptional regulator K02483 K02483; two-component system, OmpR family, response regulator
D TREPR_3347 ExpA K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D TREPR_2015 transcriptional regulator, LuxR family protein K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D TREPR_3518 DNA-binding response regulator K11618 liaR; two-component system, NarL family, response regulator LiaR
D TREPR_2482 two-component system sensor kinase K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3]
D TREPR_2228 sensory box histidine kinase K13533 kinE; two-component system, sporulation sensor kinase E [EC:2.7.13.3]
D TREPR_0685 histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D TREPR_0684 nitrogen assimilation regulatory protein NtrX K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D TREPR_0161 putative signal transduction histidine kinase, nitrogen specific, NtrB K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D TREPR_0162 sigma-54 dependent transcriptional regulator/response regulator K07714 atoC; two-component system, NtrC family, response regulator AtoC
D TREPR_2972 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D TREPR_1655 response regulator receiver domain protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D TREPR_3361 chemotaxis protein Chey K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D TREPR_1659 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D TREPR_3012 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D TREPR_3004 Two-component response regulator K07720 yesN; two-component system, response regulator YesN
D TREPR_3404 transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D TREPR_1054 sensory box histidine kinase/response regulator K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
D TREPR_3194 multi-sensor hybrid histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
D TREPR_2451 sensory transduction histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
D TREPR_0855 sensory transduction histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
C 02035 Bacterial motility proteins [BR:tpi02035]
D TREPR_2972 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D TREPR_1655 response regulator receiver domain protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D TREPR_2936 purine-binding chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW
D TREPR_1661 conserved hypothetical protein K03408 cheW; purine-binding chemotaxis protein CheW
D TREPR_2971 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D TREPR_2970 chemotaxis protein CheX K03409 cheX; chemotaxis protein CheX
D TREPR_1658 putative MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D TREPR_3013 cheR; CheR methyltransferase, SAM-binding domain protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D TREPR_1659 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D TREPR_3012 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D TREPR_3361 chemotaxis protein Chey K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D TREPR_0052 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_1705 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_3059 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_1664 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_1656 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_2978 Mcp-2 K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_2941 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_2733 putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_2928 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_0699 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_0495 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_0494 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_0493 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D TREPR_2556 flagellar assembly protein K02411 fliH; flagellar assembly protein FliH
D TREPR_2555 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D TREPR_2554 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D TREPR_2854 conserved hypothetical protein K02418 fliO; flagellar protein FliO/FliZ
D TREPR_2853 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D TREPR_2852 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D TREPR_2851 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D TREPR_3866 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D TREPR_2849 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D TREPR_2850 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D TREPR_1015 putative flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D TREPR_2557 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D TREPR_2856 fliM_2; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D TREPR_1885 hypothetical protein K02416 fliM; flagellar motor switch protein FliM
D TREPR_3134 fliM_1; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D TREPR_2855 flagellar motor switch protein FliY K02417 fliN; flagellar motor switch protein FliN
D TREPR_2558 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D TREPR_2858 fliL_1; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D TREPR_1119 fliL_2; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D TREPR_2559 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D TREPR_2561 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D TREPR_2560 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D TREPR_2864 flgD; flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D TREPR_3479 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D TREPR_3480 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D TREPR_3481 putative flagellar protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D TREPR_2863 flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D TREPR_1919 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D TREPR_1920 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D TREPR_1932 flagellar filament 34.5 kDa core protein (Class B) K02406 fliC; flagellin
D TREPR_1931 flagellar filament 34.5 kDa core protein (Class B) K02406 fliC; flagellin
D TREPR_0296 flagellar filament 34.5 kDa core protein (Class B) K02406 fliC; flagellin
D TREPR_1929 flagellar hook-associated protein 2 (HAP2) (Filament cap protein)(Flagellar cap protein) K02407 fliD; flagellar hook-associated protein 2
D TREPR_1165 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D TREPR_2845 RNA polymerase sigma-D factor K02405 fliA; RNA polymerase sigma factor FliA
D TREPR_2861 chemotaxis protein PomA K02556 motA; chemotaxis protein MotA
D TREPR_2860 chemotaxis protein MotB K02557 motB; chemotaxis protein MotB
D TREPR_1355 amino acid ABC-transporter, periplasmic amino acid-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D TREPR_1921 flagellar assembly factor FliW K13626 fliW; flagellar assembly factor FliW
D TREPR_1930 putative flagellin FlaG K06603 flaG; flagellar protein FlaG
D TREPR_2866 22.5 kDa protein K02383 flbB; flagellar protein FlbB
D TREPR_2862 conserved domain protein K02385 flbD; flagellar protein FlbD
D TREPR_2848 flagellar biosynthesis protein FlhF (Flagella-associated GTP-bindingprotein) K02404 flhF; flagellar biosynthesis protein FlhF
D TREPR_3829 ATP-binding protein K04562 flhG; flagellar biosynthesis protein FlhG
D TREPR_2847 flagellar synthesis regulator FleN K04562 flhG; flagellar biosynthesis protein FlhG
D TREPR_1395 bacterial type II secretion system protein F domain protein K02653 pilC; type IV pilus assembly protein PilC
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:tpi04812]
D TREPR_1172 conserved hypothetical protein K06990 MEMO1; MEMO1 family protein
D TREPR_2499 protein of unknown function DUF52 K06990 MEMO1; MEMO1 family protein
D TREPR_2325 Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D TREPR_2569 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D TREPR_2570 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D TREPR_2755 sporulation initiation inhibitor protein Soj K03496 parA; chromosome partitioning protein
D TREPR_0913 putative plasmid partition protein K03496 parA; chromosome partitioning protein
D TREPR_1584 transcriptional repressor protein KorB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D TREPR_2754 chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D TREPR_0912 conserved hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:tpi04147]
D TREPR_3196 chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D TREPR_0776 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D TREPR_2454 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D TREPR_0395 pgk_2; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D TREPR_0649 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D TREPR_0450 peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D TREPR_1781 putative dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D TREPR_0596 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D TREPR_3307 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D TREPR_0312 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D TREPR_2249 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D TREPR_0226 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D TREPR_1475 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D TREPR_1076 histidine triad nucleotide-binding protein 1 K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D TREPR_0175 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D TREPR_1173 long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D TREPR_0987 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D TREPR_0854 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D TREPR_3432 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D TREPR_3357 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D TREPR_3350 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D TREPR_0426 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D TREPR_0040 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D TREPR_2801 putative galactokinase (Galactose kinase) K00849 galK; galactokinase [EC:2.7.1.6]
D TREPR_3330 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D TREPR_3525 glutamine synthetase (Glutamate--ammonia ligase) (GS) K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D TREPR_0262 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D TREPR_1330 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D TREPR_3802 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D TREPR_1968 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D TREPR_3778 bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D TREPR_3835 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D TREPR_1266 etfA; electron transfer flavoprotein, alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit
D TREPR_2452 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:tpi02048]
D TREPR_1093 csm1; crispr-associated protein, Csm1 family K07016 csm1; CRISPR-associated protein Csm1
D TREPR_1094 putative crispr-associated protein, Csm2 family K19138 csm2; CRISPR-associated protein Csm2
D TREPR_1095 csm3; crispr-associated ramp protein, Csm3 family K09002 csm3; CRISPR-associated protein Csm3
D TREPR_1096 conserved hypothetical protein K19139 csm4; CRISPR-associated protein Csm4
D TREPR_1097 hypothetical protein K19140 csm5; CRISPR-associated protein Csm5
D TREPR_3629 type III restriction enzyme, res subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D TREPR_0817 type I restriction-modification system R subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D TREPR_2280 HsdR K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D TREPR_2739 putatIve type i restriction enzyme hindviip r protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D TREPR_3693 dna methylase-type I restriction-modification system K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D TREPR_0820 type I restriction-modification system S subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D TREPR_0818 type I site-specific deoxyribonuclease K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D TREPR_2282 hypothetical protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D TREPR_2736 restriction modification system DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D TREPR_3630 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D TREPR_0824 type I restriction modification system M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D TREPR_2283 type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D TREPR_2734 putatIve type i restriction enzyme hindviip m protein (m.hindviip) K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D TREPR_3692 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D TREPR_3463 modification methylase lladchia (adenine-specificmethyltransferase lladchia) (m.lladchia) (m.lladchi a) (m.llaii a) K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D TREPR_0653 modification methylase PstI (Adenine-specificmethyltransferase PstI) (M.PstI) K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D TREPR_1274 D12 class N6 adenine-specific DNA methyltransferase K07318 K07318; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D TREPR_1418 PemK family protein K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D TREPR_3249 ChpK K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D TREPR_1197 toxin-antitoxin system, toxin component, MazF family K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D TREPR_1863 transcriptional modulator of MazE/toxin, MazF K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D TREPR_0166 ChpK K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D TREPR_2171 conserved hypothetical protein K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D TREPR_1419 PemI family protein K07172 mazE; antitoxin MazE
D TREPR_1196 toxin-antitoxin system, antitoxin component, MazF family K07172 mazE; antitoxin MazE
D TREPR_1440 addiction module antitoxin, RelB/DinJ family K07473 dinJ; DNA-damage-inducible protein J
D TREPR_1691 plasmid stabilization system antitoxin protein K07473 dinJ; DNA-damage-inducible protein J
D TREPR_3234 addiction module antitoxin, RelB/DinJ family K07473 dinJ; DNA-damage-inducible protein J
D TREPR_1810 addiction module antitoxin, RelB/DinJ family K07473 dinJ; DNA-damage-inducible protein J
D TREPR_3233 addiction module toxin, Txe/YoeB family K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D TREPR_2619 addiction module toxin, Txe/YoeB family K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D TREPR_1439 addiction module toxin, Txe/YoeB family K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D TREPR_1262 HipA domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D TREPR_2613 conserved hypothetical protein K18843 hicB; antitoxin HicB
D TREPR_1692 conserved plasmid protein K19092 parE1_3_4; toxin ParE1/3/4
D TREPR_3763 putative addiction module antidote protein, HigA family K21498 higA-1; antitoxin HigA-1
D TREPR_1406 higA_2; addiction module antidote protein, HigA family K21498 higA-1; antitoxin HigA-1
D TREPR_3321 higA_1; addiction module antidote protein, HigA family K21498 higA-1; antitoxin HigA-1
D TREPR_0212 putative virulence-associated protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D TREPR_0606 putative virulence-associated protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D TREPR_0324 virulence associated protein C K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D TREPR_0213 putative virulence protein K18829 mvpT; antitoxin VapB
D TREPR_0605 putative virulence protein K18829 mvpT; antitoxin VapB
D TREPR_0323 putative virulence protein K18829 mvpT; antitoxin VapB
D TREPR_1183 plasmid stability protein K07062 fitB; toxin FitB [EC:3.1.-.-]
D TREPR_2569 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D TREPR_2325 Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D TREPR_2442 gyrA_1; DNA gyrase, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D TREPR_2445 DNA topoisomerase II (N-region) domain protein K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D TREPR_2817 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D TREPR_2794 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D TREPR_2724 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:tpi01504]
D TREPR_3136 efflux transporter protein K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D TREPR_0057 virginiamycin A acetyltransferase K18234 vat; virginiamycin A acetyltransferase [EC:2.3.1.-]
D TREPR_1572 carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D TREPR_3614 putative membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D TREPR_2710 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:tpi00537]
D TREPR_1330 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D TREPR_1781 putative dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:tpi03100]
D TREPR_3909 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D TREPR_3945 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D TREPR_3916 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D TREPR_3896 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D TREPR_3935 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D TREPR_3941 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D TREPR_3930 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D TREPR_3953 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D TREPR_3910 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D TREPR_3949 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D TREPR_3924 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D TREPR_3914 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D TREPR_3946 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D TREPR_3928 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D TREPR_3947 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D TREPR_3932 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D TREPR_3934 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D TREPR_3927 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D TREPR_3908 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D TREPR_3923 tRNA-His K14226 tRNA-His; tRNA His
D TREPR_3900 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D TREPR_3906 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D TREPR_3937 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D TREPR_3950 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D TREPR_3939 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D TREPR_3940 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D TREPR_3933 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D TREPR_3911 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D TREPR_3920 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D TREPR_3931 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D TREPR_3956 tRNA-Met K14230 tRNA-Met; tRNA Met
D TREPR_3902 tRNA-Met K14230 tRNA-Met; tRNA Met
D TREPR_3936 tRNA-Met K14230 tRNA-Met; tRNA Met
D TREPR_3938 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D TREPR_3919 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D TREPR_3907 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D TREPR_3948 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D TREPR_3955 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D TREPR_3954 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D TREPR_3951 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D TREPR_3952 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D TREPR_3912 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D TREPR_3925 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D TREPR_3905 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D TREPR_3913 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D TREPR_3926 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D TREPR_3897 tRNA-Val K14237 tRNA-Val; tRNA Val
D TREPR_3942 tRNA-Val K14237 tRNA-Val; tRNA Val
D TREPR_3922 tRNA-Val K14237 tRNA-Val; tRNA Val
D TREPR_3943 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D TREPR_3901 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D TREPR_3915 rrsB; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D TREPR_3899 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D TREPR_3917 rrlB; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D TREPR_3898 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D TREPR_3918 rrfB; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D TREPR_3904 srpB; Bacterial signal recognition particle RNA K01983 ffs; SRP RNA
D TREPR_3929 TREPR_3929 K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D TREPR_2359 isoquinoline 1-oxidoreductase subunit alpha K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3]
D TREPR_2147 indolepyruvate oxidoreductase subunit IorA (IOR)(Indolepyruvate ferredoxin oxidoreductase subunit alpha) K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8]
D TREPR_2146 indolepyruvate oxidoreductase subunit IorB (IOR)(Indolepyruvate ferredoxin oxidoreductase subunit beta) K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8]
D TREPR_1050 thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D TREPR_3595 NADH dehydrogenase K18331 hndC; NADP-reducing hydrogenase subunit HndC [EC:1.12.1.3]
D TREPR_3433 pirin domain protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D TREPR_0511 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D TREPR_2521 radical SAM domain protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D TREPR_3758 radical SAM K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D TREPR_3426 radical SAM domain protein K04070 pflX; putative pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D TREPR_0011 O-methyltransferase K05303 K05303; O-methyltransferase [EC:2.1.1.-]
D TREPR_1064 conserved hypothetical protein K05303 K05303; O-methyltransferase [EC:2.1.1.-]
D TREPR_0498 N6-adenine-specific DNA methylase K07444 ypsC; putative N6-adenine-specific DNA methylase [EC:2.1.1.-]
D TREPR_0562 galactoside O-acetyltransferase K00633 lacA; galactoside O-acetyltransferase [EC:2.3.1.18]
D TREPR_3135 N-acetyltransferase superfamily K00675 nhoA; N-hydroxyarylamine O-acetyltransferase [EC:2.3.1.118]
D TREPR_1363 conserved hypothetical protein K21399 ortA; 2-amino-4-ketopentanoate thiolase alpha subunit [EC:2.3.1.263]
D TREPR_1362 pyridoxal-5'-phosphate-dependent protein beta subunit K21400 ortB; 2-amino-4-ketopentanoate thiolase beta subunit [EC:2.3.1.263]
D TREPR_1947 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D TREPR_2814 aat; leucyltransferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D TREPR_1612 glycosylase K20885 K20885; beta-1,2-mannobiose phosphorylase / 1,2-beta-oligomannan phosphorylase [EC:2.4.1.339 2.4.1.340]
D TREPR_1803 putative sucrose phosphorylase (Sucroseglucosyltransferase) K22597 E2.4.1.352; glucosylglycerate phosphorylase [EC:2.4.1.352]
D TREPR_3217 phosphoribosylaminoimidazole carboxylase ncair mutase subunit K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143]
D TREPR_3841 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D TREPR_2476 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D TREPR_0974 ApbE family protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D TREPR_0073 cdsA_1; phosphatidate cytidylyltransferase K18678 VTE5; phytol kinase [EC:2.7.1.182]
D TREPR_1936 conserved hypothetical protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85]
D TREPR_0190 sulfatase domain protein K01002 mdoB; phosphoglycerol transferase [EC:2.7.8.20]
D TREPR_0687 hprK; HPr(Ser) kinase/phosphatase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
D TREPR_1338 para-nitroBenzyl esterase (pnb carboxy-esterase)(intracellular esterase b) (pnbce) K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-]
D TREPR_1599 para-nitroBenzyl esterase (pnb carboxy-esterase)(intracellular esterase b) (pnbce) K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-]
D TREPR_1337 para-nitroBenzyl esterase (pnb carboxy-esterase)(intracellular esterase b) (pnbce) K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-]
D TREPR_0446 fatty acyl-CoA hydrolase, medium chain (Thioesterase B) K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-]
D TREPR_0552 tributyrin esterase K03930 estA; putative tributyrin esterase [EC:3.1.1.-]
D TREPR_2668 thioesterase family protein K18700 flK; fluoroacetyl-CoA thioesterase [EC:3.1.2.29]
D TREPR_0181 thioesterase family protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D TREPR_1631 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D TREPR_0469 protein-tyrosine phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D TREPR_3813 PHP domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D TREPR_1687 HD domain protein K07037 pgpH; cyclic-di-AMP phosphodiesterase PgpH [EC:3.1.4.-]
D TREPR_3505 response regulator K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D TREPR_1704 response regulator receiver modulated metal dependent phosphohydrolase K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D TREPR_2456 response regulator receiver:Metal-dependent phosphohydrolase HD domain protein K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D TREPR_3700 deoxyribonuclease TatD (DNase tatD) K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D TREPR_3527 deoxyribonuclease, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D TREPR_2217 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D TREPR_0452 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D TREPR_0748 endonuclease/exonuclease/phosphatase family protein K11995 DNASE1L; deoxyribonuclease-1-like protein [EC:3.1.21.-]
D TREPR_1211 probable N-glycosylase/DNA lyase K03653 K03653; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
D TREPR_1782 putative D-aminoacylase K06015 E3.5.1.81; N-acyl-D-amino-acid deacylase [EC:3.5.1.81]
D TREPR_2511 N-acyl-D-aspartate deacylase K06015 E3.5.1.81; N-acyl-D-amino-acid deacylase [EC:3.5.1.81]
D TREPR_1178 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D TREPR_2961 putative endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D TREPR_0178 ATPase, AAA family K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D TREPR_3264 moxR; ATPase, MoxR family K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D TREPR_3215 conserved hypothetical protein K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37]
D TREPR_1228 methionine gamma-lyase (L-methioninase) K26365 cangL; canavanine-gamma-lyase [EC:4.4.1.43]
D TREPR_3216 conserved hypothetical protein K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12]
D TREPR_3091 (R)-2-hydroxyglutaryl-CoA dehydratase activator K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9]
D TREPR_1747 putative membrane protein K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D TREPR_0309 RnfD K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D TREPR_1746 putative 4Fe-4S ferredoxin, RnfC K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D TREPR_0310 electron transport complex protein RnfC K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D TREPR_0305 ferredoxin K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D TREPR_2948 cadA; cadmium-exporting ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
C 99981 Carbohydrate metabolism
D TREPR_1058 putative transcriptional regulator K06206 sfsA; sugar fermentation stimulation protein A
D TREPR_1127 CBS domain protein K04767 acuB; acetoin utilization protein AcuB
C 99982 Energy metabolism
D TREPR_3097 phenylacetyl CoA K02379 fdhD; FdhD protein
D TREPR_0308 electron transport complex, rnfabcdGe type, g subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D TREPR_0307 na(+)-translocating NADH-quinone reductase subunit d (na(+)-translocating nqr subunit d) (na(+)-nqr subunit d) (nqr complexsubunit d) (nqr-1 subunit d) K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D TREPR_0306 Na+-translocating NADH-quinone reductase, E subunit K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D TREPR_2723 IscU protein K13819 K13819; NifU-like protein
D TREPR_3360 metallo-beta-lactamase family protein K12264 norV; anaerobic nitric oxide reductase flavorubredoxin
D TREPR_2883 nifB; nitrogenase cofactor biosynthesis protein NifB K02585 nifB; nitrogen fixation protein NifB
D TREPR_2884 nitrogenase molybdenum-iron protein beta chain (Nitrogenase component I) (Dinitrogenase) K02592 nifN; nitrogenase molybdenum-iron protein NifN
D TREPR_2885 nifE; nitrogenase MoFe cofactor biosynthesis protein NifE K02587 nifE; nitrogenase molybdenum-cofactor synthesis protein NifE
D TREPR_3800 flavodoxin K03839 fldA; flavodoxin I
D TREPR_3830 4Fe-4S ferredoxin iron-sulfur binding domain protein K02574 napH; ferredoxin-type protein NapH
D TREPR_1265 etfB; electron transfer flavoprotein, beta subunit K03521 fixA; electron transfer flavoprotein beta subunit
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D TREPR_3486 pyridoxal phosphate enzyme, YggS family K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
C 99987 Cofactor metabolism
C 99988 Secondary metabolism
D TREPR_2220 probable NADPH:quinone oxidoreductase 2 K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D TREPR_2889 nitrogen regulatory protein P-II K02589 nifHD1; nitrogen regulatory protein PII 1
D TREPR_2888 nitrogen regulatory protein P-II K02590 nifHD2; nitrogen regulatory protein PII 2
D TREPR_3513 nitrogen regulatory protein P-II K04752 glnK; nitrogen regulatory protein P-II 2
D TREPR_3795 tex protein K06959 tex; protein Tex
C 99974 Translation
D TREPR_0303 metallo-beta-lactamase family protein K07576 K07576; metallo-beta-lactamase family protein
C 99975 Protein processing
D TREPR_2812 clpS; ATP-dependent Clp protease adaptor protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D TREPR_2598 tig; trigger factor K03545 tig; trigger factor
D TREPR_2490 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D TREPR_1062 Mg chelatase-like protein K07391 comM; magnesium chelatase family protein
D TREPR_0757 conserved hypothetical protein K07403 nfeD; membrane-bound serine protease (ClpP class)
C 99976 Replication and repair
D TREPR_3409 methylated-DNA--[protein]-cysteine S-methyltransferase K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D TREPR_3367 DNA repair protein RadC K03630 radC; DNA repair protein RadC
D TREPR_0898 DNA repair protein RadC K03630 radC; DNA repair protein RadC
D TREPR_3161 conserved hypothetical protein K07460 yraN; putative endonuclease
D TREPR_2566 smf protein K04096 smf; DNA processing protein
D TREPR_2085 phage terminase, large subunit, PBSX family K06909 xtmB; phage terminase large subunit
D TREPR_2013 phage terminase, large subunit, PBSX family K06909 xtmB; phage terminase large subunit
D TREPR_2423 ATPase, AAA family K07478 ycaJ; putative ATPase
D TREPR_2198 conserved hypothetical protein K06919 K06919; putative DNA primase/helicase
D TREPR_2094 conserved hypothetical protein K06919 K06919; putative DNA primase/helicase
D TREPR_2263 conserved hypothetical protein K06919 K06919; putative DNA primase/helicase
D TREPR_2052 conserved hypothetical protein K06919 K06919; putative DNA primase/helicase
D TREPR_2917 hypothetical protein K07486 K07486; transposase
D TREPR_3886 hypothetical protein K07486 K07486; transposase
D TREPR_0864 conserved hypothetical protein K07491 rayT; REP-associated tyrosine transposase
D TREPR_2108 conserved hypothetical protein K07491 rayT; REP-associated tyrosine transposase
D TREPR_3621 transposase, mutator family K07493 K07493; putative transposase
D TREPR_2392 transposase, Mutator family K07493 K07493; putative transposase
D TREPR_2176 transposase, Mutator family K07493 K07493; putative transposase
D TREPR_2157 transposase, Mutator family K07493 K07493; putative transposase
D TREPR_2268 transposase, Mutator family K07493 K07493; putative transposase
D TREPR_2064 transposase, Mutator family K07493 K07493; putative transposase
D TREPR_1011 transposase, Mutator family K07493 K07493; putative transposase
C 99979 Viral proteins
C 99998 Others
D TREPR_0066 phage shock protein A, PspA K03969 pspA; phage shock protein A
D TREPR_0448 conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D TREPR_2770 sugar transporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family
D TREPR_1384 acriflavine resistance protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D TREPR_2148 SSS sodium solute transporter superfamily K03307 TC.SSS; solute:Na+ symporter, SSS family
D TREPR_3564 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
C 99978 Cell growth
D TREPR_3545 carbon monoxide dehydrogenase accessory protein CooC K07321 cooC; CO dehydrogenase maturation factor
D TREPR_3068 carbon monoxide dehydrogenase accessory protein CooC K07321 cooC; CO dehydrogenase maturation factor
D TREPR_3132 cobyrinic Acid a,c-diamide synthase K07321 cooC; CO dehydrogenase maturation factor
D TREPR_0502 spoiiij-associated protein K06346 jag; spoIIIJ-associated protein
D TREPR_1208 putative septation protein SpoVG K06412 spoVG; stage V sporulation protein G
D TREPR_2463 spore coat polysaccharide biosynthesis protein SpsF K07257 spsF; spore coat polysaccharide biosynthesis protein SpsF
C 99993 Cell motility
D TREPR_2230 putative lipoprotein K07337 K07337; penicillin-binding protein activator
C 99995 Signaling proteins
D TREPR_0970 carbon starvation protein A K06200 cstA; carbon starvation protein
D TREPR_2622 ACT domain protein K07166 K07166; ACT domain-containing protein
D TREPR_1686 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
C 99992 Structural proteins
D TREPR_2631 cationic outer membrane protein K06142 hlpA; outer membrane protein
D TREPR_2470 LysM domain/M23/M37 peptidase domain protein K06194 nlpD; lipoprotein NlpD
C 99994 Others
D TREPR_3772 hemerythrin family protein K07216 hr; hemerythrin
D TREPR_1778 hemerythrin family protein K07216 hr; hemerythrin
D TREPR_1460 hemerythrin K07216 hr; hemerythrin
D TREPR_1143 molybdate-binding protein K07219 K07219; putative molybdopterin biosynthesis protein
B
B 09194 Poorly characterized
C 99996 General function prediction only
D TREPR_2222 cvpA; CvpA family protein K03558 cvpA; membrane protein required for colicin V production
D TREPR_0641 putative hydrolase K04477 ycdX; putative hydrolase
D TREPR_1832 dead/deah box helicase domain protein K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D TREPR_3601 patatin family protein K07001 K07001; NTE family protein
D TREPR_0017 conserved hypothetical protein K07025 K07025; putative hydrolase of the HAD superfamily
D TREPR_1912 HAD-superfamily hydrolase, subfamily IA, variant 3 K07025 K07025; putative hydrolase of the HAD superfamily
D TREPR_1987 HAD superfamily hydrolase K07025 K07025; putative hydrolase of the HAD superfamily
D TREPR_1978 hydrolase K07025 K07025; putative hydrolase of the HAD superfamily
D TREPR_1977 HAD-superfamily hydrolase, subfamily IA, variant 1 K07025 K07025; putative hydrolase of the HAD superfamily
D TREPR_1420 HAD-superfamily hydrolase K07025 K07025; putative hydrolase of the HAD superfamily
D TREPR_3790 phage infection protein K01421 yhgE; putative membrane protein
D TREPR_0409 SEC-C domain protein K09858 K09858; SEC-C motif domain protein
C 99997 Function unknown
D TREPR_2820 ankyrin repeat protein K06867 K06867; uncharacterized protein
D TREPR_2876 chondroitin sulfate/heparin utilization regulation protein K06871 K06871; uncharacterized protein
D TREPR_0692 metal dependent phosphohydrolase K06885 K06885; uncharacterized protein
D TREPR_3489 putative ATPase K06921 K06921; uncharacterized protein
D TREPR_0501 ATPase K06923 K06923; uncharacterized protein
D TREPR_2317 conserved hypothetical protein K06940 K06940; uncharacterized protein
D TREPR_2745 HD family hydrolase, diverged K06950 K06950; uncharacterized protein
D TREPR_3154 conserved domain protein K06960 K06960; uncharacterized protein
D TREPR_3875 acetyltransferase, GNAT family K06976 K06976; uncharacterized protein
D TREPR_2826 putative membrane protein K07003 K07003; uncharacterized protein
D TREPR_1036 putative membrane protein K07003 K07003; uncharacterized protein
D TREPR_1198 5-nitroimidazole antibiotic resistance protein K07005 K07005; uncharacterized protein
D TREPR_1061 membrane protein, GPR1/FUN34/YaaH family K07034 K07034; uncharacterized protein
D TREPR_1227 PfoR protein K07035 K07035; uncharacterized protein
D TREPR_0661 putative amidohydrolase 2 K07045 K07045; uncharacterized protein
D TREPR_0952 nucleotidyltransferase family protein K07075 K07075; uncharacterized protein
D TREPR_3247 nucleotidyltransferase family protein K07075 K07075; uncharacterized protein
D TREPR_0743 DNA polymerase, beta domain protein region K07075 K07075; uncharacterized protein
D TREPR_3779 Fe-S oxidoreductase K07079 K07079; uncharacterized protein
D TREPR_3460 aldo/keto reductase K07079 K07079; uncharacterized protein
D TREPR_1109 aldo/keto reductase K07079 K07079; uncharacterized protein
D TREPR_3365 oxidoreductase, aldo/keto reductase family K07079 K07079; uncharacterized protein
D TREPR_0302 aldo/keto reductase K07079 K07079; uncharacterized protein
D TREPR_2698 putative membrane protein K07089 K07089; uncharacterized protein
D TREPR_0984 conserved domain protein K07090 K07090; uncharacterized protein
D TREPR_2807 phosphoribosyl transferase domain protein K07101 K07101; uncharacterized protein
D TREPR_1290 Sel1 domain protein K07126 K07126; uncharacterized protein
D TREPR_3574 ATPase K07133 K07133; uncharacterized protein
D TREPR_3656 ATPase K07133 K07133; uncharacterized protein
D TREPR_1794 ATPase K07133 K07133; uncharacterized protein
D TREPR_2740 ATPase K07133 K07133; uncharacterized protein
D TREPR_0318 ATPase K07133 K07133; uncharacterized protein
D TREPR_2699 conserved hypothetical protein K07138 K07138; uncharacterized protein
D TREPR_0551 4Fe-4S ferredoxin, iron-sulfur binding domain protein K07138 K07138; uncharacterized protein
D TREPR_1166 conserved hypothetical protein K07150 K07150; uncharacterized protein
D TREPR_2323 putative zinc ribbon domain family K07164 K07164; uncharacterized protein
D TREPR_0504 conserved hypothetical protein K08998 K08998; uncharacterized protein
D TREPR_0715 conserved hypothetical protein K08999 K08999; uncharacterized protein
D TREPR_1999 conserved hypothetical protein K09005 K09005; uncharacterized protein
D TREPR_1114 conserved hypothetical protein K09126 K09126; uncharacterized protein
D TREPR_2235 protein C15orf40 K09131 K09131; uncharacterized protein
D TREPR_1132 conserved hypothetical protein K09138 K09138; uncharacterized protein
D TREPR_0799 conserved hypothetical protein K09141 K09141; uncharacterized protein
D TREPR_2621 conserved hypothetical protein K09157 K09157; uncharacterized protein
D TREPR_0055 metal dependent phosphohydrolase K09163 K09163; uncharacterized protein
D TREPR_2844 conserved hypothetical protein K09749 K09749; uncharacterized protein
D TREPR_2247 conserved hypothetical protein K09749 K09749; uncharacterized protein
D TREPR_2645 conserved hypothetical protein K09764 K09764; uncharacterized protein
D TREPR_1939 conserved hypothetical protein K09766 K09766; uncharacterized protein
D TREPR_1651 conserved hypothetical protein K09768 K09768; uncharacterized protein
D TREPR_3009 conserved hypothetical protein K09770 K09770; uncharacterized protein
D TREPR_1744 integral membrane protein K09775 K09775; uncharacterized protein
D TREPR_0164 divergent polysaccharide deacetylase family K09798 K09798; uncharacterized protein
D TREPR_2778 conserved hypothetical protein K09803 K09803; uncharacterized protein
D TREPR_2231 putative lipoprotein K09859 K09859; uncharacterized protein
D TREPR_1576 conserved hypothetical protein K09942 K09942; uncharacterized protein
D TREPR_1765 conserved hypothetical protein K01163 K01163; uncharacterized protein
D TREPR_1831 YprB K07502 yprB; uncharacterized protein
D TREPR_3449 conserved hypothetical protein K07584 ysxB; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 7, 2024