+F Repair protein KO
#
DNA Repair and Recombination Proteins - Trichoderma reesei QM6a
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D TRIREDRAFT_5247 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D TRIREDRAFT_107680 phr1; DNA photolyase, class I K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E TRIREDRAFT_64117 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E TRIREDRAFT_64832 hypothetical protein K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E TRIREDRAFT_67658 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E TRIREDRAFT_40945 hypothetical protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E TRIREDRAFT_30578 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E TRIREDRAFT_30805 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E TRIREDRAFT_58076 apurinic/apyrimidinic endonuclease-like protein K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2]
E TRIREDRAFT_59147 DNA lyase K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F TRIREDRAFT_2095 DNA polymerase delta, catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F TRIREDRAFT_102401 hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
F TRIREDRAFT_75069 hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3
F TRIREDRAFT_61551 hypothetical protein K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F TRIREDRAFT_3779 DNA polymerase epsilon, catalytic subunit A K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F TRIREDRAFT_58184 hypothetical protein K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F TRIREDRAFT_108421 hypothetical protein K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E TRIREDRAFT_120486 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E TRIREDRAFT_61039 Rad27p/FEN-1 endonuclease-like protein K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E TRIREDRAFT_22881 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
D Other BER factors
E TRIREDRAFT_53660 hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E TRIREDRAFT_65128 hypothetical protein K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E TRIREDRAFT_22115 hypothetical protein K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F TRIREDRAFT_61075 hypothetical protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F TRIREDRAFT_75205 DNA repair rad4-like protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F TRIREDRAFT_102581 hypothetical protein K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F TRIREDRAFT_121950 hypothetical protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F TRIREDRAFT_5148 hypothetical protein K10609 CUL4; cullin 4
F TRIREDRAFT_56582 hypothetical protein K10610 DDB1; DNA damage-binding protein 1
E NER4 complex
F TRIREDRAFT_121381 nucleotide exicision repair protein K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F TRIREDRAFT_79315 hypothetical protein K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F TRIREDRAFT_79225 rpb2; beta subunit of DNA-directed RNA polymerase K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F TRIREDRAFT_78726 hypothetical protein K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F TRIREDRAFT_65640 hypothetical protein K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F TRIREDRAFT_55185 hypothetical protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F TRIREDRAFT_61815 hypothetical protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F TRIREDRAFT_63547 hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F TRIREDRAFT_104015 hypothetical protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F TRIREDRAFT_81043 hypothetical protein K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F TRIREDRAFT_64752 hypothetical protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F TRIREDRAFT_74444 hypothetical protein K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F TRIREDRAFT_102976 hypothetical protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F TRIREDRAFT_121950 hypothetical protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F TRIREDRAFT_5148 hypothetical protein K10609 CUL4; cullin 4
F TRIREDRAFT_56582 hypothetical protein K10610 DDB1; DNA damage-binding protein 1
F TRIREDRAFT_22637 hypothetical protein K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F TRIREDRAFT_62057 hypothetical protein K10841 ERCC6; DNA excision repair protein ERCC-6
F TRIREDRAFT_66474 hypothetical protein K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E TRIREDRAFT_120753 Rad3 protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E TRIREDRAFT_112413 rhp3; DNA excision repair helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E TRIREDRAFT_66091 hypothetical protein K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E TRIREDRAFT_77991 hypothetical protein K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E TRIREDRAFT_67476 hypothetical protein K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E TRIREDRAFT_60634 trancription factor tfb2-like protein K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E TRIREDRAFT_110931 hypothetical protein K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E TRIREDRAFT_69217 protease-like protein K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E TRIREDRAFT_69793 hypothetical protein K06634 CCNH; cyclin H
E TRIREDRAFT_67957 kinase K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E TRIREDRAFT_71468 replication factor A-like protein K07466 RFA1; replication factor A1
E TRIREDRAFT_55902 hypothetical protein K10739 RFA2; replication factor A2
E TRIREDRAFT_59964 hypothetical protein K10740 RPA3; replication factor A3
D Other NER factors
E TRIREDRAFT_69998 hypothetical protein K10847 XPA; DNA-repair protein complementing XP-A cells
E TRIREDRAFT_57198 hypothetical protein K10849 ERCC1; DNA excision repair protein ERCC-1
E TRIREDRAFT_72108 mus38; DNA repair protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E TRIREDRAFT_79304 hypothetical protein K10846 ERCC5; DNA excision repair protein ERCC-5
E TRIREDRAFT_22881 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E TRIREDRAFT_4939 hypothetical protein K15075 MET18; DNA repair/transcription protein MET18/MMS19
E TRIREDRAFT_82651 hypothetical protein K03869 CUL3; cullin 3
E TRIREDRAFT_1947 hypothetical protein K03872 ELOC; elongin-C
E TRIREDRAFT_40343 hypothetical protein K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E TRIREDRAFT_61042 DNA mismatch repair protein K08735 MSH2; DNA mismatch repair protein MSH2
E TRIREDRAFT_3208 DNA mismatch repair protein K08736 MSH3; DNA mismatch repair protein MSH3
E TRIREDRAFT_62301 DNA repair protein K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E TRIREDRAFT_21460 DNA mismatch repair protein K08734 MLH1; DNA mismatch repair protein MLH1
E TRIREDRAFT_70778 hypothetical protein K10858 PMS2; DNA mismatch repair protein PMS2
E TRIREDRAFT_63047 hypothetical protein K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E TRIREDRAFT_2095 DNA polymerase delta, catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E TRIREDRAFT_102401 hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
E TRIREDRAFT_75069 hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3
E TRIREDRAFT_61551 hypothetical protein K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E TRIREDRAFT_71468 replication factor A-like protein K07466 RFA1; replication factor A1
E TRIREDRAFT_55902 hypothetical protein K10739 RFA2; replication factor A2
E TRIREDRAFT_59964 hypothetical protein K10740 RPA3; replication factor A3
D RFC (replication factor C)
E TRIREDRAFT_25225 replication factor C, subunit 1-like protein K10754 RFC1; replication factor C subunit 1
E TRIREDRAFT_122392 hypothetical protein K10755 RFC2_4; replication factor C subunit 2/4
E TRIREDRAFT_44459 replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4
E TRIREDRAFT_73778 replication factor C, subunit 5-like protein K10756 RFC3_5; replication factor C subunit 3/5
E TRIREDRAFT_61544 replication factor C, subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E TRIREDRAFT_120486 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E TRIREDRAFT_60769 nuclease-like protein K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E TRIREDRAFT_22881 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E TRIREDRAFT_4170 hypothetical protein K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E TRIREDRAFT_70084 hypothetical protein K10865 MRE11; double-strand break repair protein MRE11
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
E TRIREDRAFT_70084 hypothetical protein K10865 MRE11; double-strand break repair protein MRE11
D BRCA complex
D RecA family proteins
D Rad52 family proteins
E TRIREDRAFT_122447 DNA repair protein K10873 RAD52; DNA repair and recombination protein RAD52
D Rad54 family proteins
E TRIREDRAFT_121506 hypothetical protein K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
D RecQ family DNA helicases
E TRIREDRAFT_102458 hypothetical protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E TRIREDRAFT_102458 hypothetical protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E TRIREDRAFT_57488 DNA topoisomerase K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E TRIREDRAFT_32543 hypothetical protein K15364 NCE4; RecQ-mediated genome instability protein 1
D RPA (replication factor A)
E TRIREDRAFT_71468 replication factor A-like protein K07466 RFA1; replication factor A1
E TRIREDRAFT_55902 hypothetical protein K10739 RFA2; replication factor A2
E TRIREDRAFT_59964 hypothetical protein K10740 RPA3; replication factor A3
D Protein phosphatase 4
E TRIREDRAFT_76845 hypothetical protein K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
D SMC5-SMC6 complex
E TRIREDRAFT_64111 hypothetical protein K22803 SMC5; structural maintenance of chromosomes protein 5
E TRIREDRAFT_106769 hypothetical protein K22804 SMC6; structural maintenance of chromosomes protein 6
E TRIREDRAFT_31118 hypothetical protein K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E TRIREDRAFT_51868 hypothetical protein K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E TRIREDRAFT_30330 hypothetical protein K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E TRIREDRAFT_112233 hypothetical protein K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E TRIREDRAFT_52956 hypothetical protein K20777 EXD2; exonuclease 3'-5' domain-containing protein 2 [EC:3.1.11.1]
E TRIREDRAFT_67527 endonuclease K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E TRIREDRAFT_119983 hypothetical protein K10881 SHFM1; 26 proteasome complex subunit DSS1
E TRIREDRAFT_60492 hypothetical protein K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E TRIREDRAFT_65768 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E TRIREDRAFT_62071 hypothetical protein K11339 MORF4L1; mortality factor 4-like protein 1
E TRIREDRAFT_22154 hypothetical protein K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E TRIREDRAFT_22402 hypothetical protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E TRIREDRAFT_102461 hypothetical protein K14635 MPH1; ATP-dependent DNA helicase MPH1 [EC:5.6.2.4]
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E TRIREDRAFT_63200 hypothetical protein K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E TRIREDRAFT_58213 hypothetical protein K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E TRIREDRAFT_70084 hypothetical protein K10865 MRE11; double-strand break repair protein MRE11
D DNA Ligase 4 complex
E TRIREDRAFT_58509 DNA ligase K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E TRIREDRAFT_77086 hypothetical protein K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
D X-family DNA polymerases
E TRIREDRAFT_66394 hypothetical protein K10981 POL4; DNA polymerase IV [EC:2.7.7.7]
E TRIREDRAFT_56780 DNA polymerase K10981 POL4; DNA polymerase IV [EC:2.7.7.7]
D Other NHEJ factors
E TRIREDRAFT_53660 hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E TRIREDRAFT_69933 hypothetical protein K10887 DCLRE1C; DNA cross-link repair 1C protein [EC:3.1.-.-]
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
E TRIREDRAFT_43195 hypothetical protein K11511 APITD1; centromere protein S
E TRIREDRAFT_107420 hypothetical protein K15360 STRA13; centromere protein X
D Bloom's syndrome complex (BTR)
E TRIREDRAFT_102458 hypothetical protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E TRIREDRAFT_57488 DNA topoisomerase K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E TRIREDRAFT_32543 hypothetical protein K15364 NCE4; RecQ-mediated genome instability protein 1
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
E TRIREDRAFT_57335 hypothetical protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E TRIREDRAFT_57568 hypothetical protein K11137 TELO2; telomere length regulation protein
E TRIREDRAFT_66966 hypothetical protein K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
E TRIREDRAFT_28865 hypothetical protein K23314 WRAP53; telomerase Cajal body protein 1
E TRIREDRAFT_57217 hypothetical protein K24752 WDR70; WD repeat-containing protein 70
E TRIREDRAFT_4170 hypothetical protein K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D TRIREDRAFT_59417 hypothetical protein K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D TRIREDRAFT_53939 hypothetical protein K03510 POLI; DNA polymerase iota [EC:2.7.7.7]
D TRIREDRAFT_107805 hypothetical protein K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D TRIREDRAFT_75518 hypothetical protein K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D TRIREDRAFT_73190 zeta catalytic subunit of dna polymerase K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D TRIREDRAFT_120075 mus8; ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D TRIREDRAFT_104000 hypothetical protein K10627 RAD18; E3 ubiquitin-protein ligase RAD18 [EC:2.3.2.27]
D TRIREDRAFT_58631 hypothetical protein K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D TRIREDRAFT_2369 hypothetical protein K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D TRIREDRAFT_63568 hypothetical protein K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D TRIREDRAFT_56682 hypothetical protein K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D TRIREDRAFT_122872 hypothetical protein K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D TRIREDRAFT_22891 hypothetical protein K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D TRIREDRAFT_120486 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
D TRIREDRAFT_58804 hypothetical protein K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D TRIREDRAFT_60450 hypothetical protein K10903 HUS1; HUS1 checkpoint protein
D TRIREDRAFT_64642 hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D TRIREDRAFT_120447 hypothetical protein K06662 HRAD17; cell cycle checkpoint protein
D TRIREDRAFT_122392 hypothetical protein K10755 RFC2_4; replication factor C subunit 2/4
D TRIREDRAFT_44459 replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4
D TRIREDRAFT_73778 replication factor C, subunit 5-like protein K10756 RFC3_5; replication factor C subunit 3/5
D TRIREDRAFT_61544 replication factor C, subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D TRIREDRAFT_64642 hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D TRIREDRAFT_53659 hypothetical protein K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D TRIREDRAFT_121171 hypothetical protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
D TRIREDRAFT_108533 hypothetical protein K11272 MRC1; mediator of replication checkpoint protein 1
C Triple T complex
D TRIREDRAFT_57568 hypothetical protein K11137 TELO2; telomere length regulation protein
D TRIREDRAFT_4936 hypothetical protein K20403 TTI1; TELO2-interacting protein 1
C BAG6-UBL4A-GET4 complex
D TRIREDRAFT_102769 hypothetical protein K23388 UBL4; ubiquitin-like protein 4
D TRIREDRAFT_54961 hypothetical protein K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D TRIREDRAFT_66128 hypothetical protein K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D TRIREDRAFT_66928 hypothetical protein K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D TRIREDRAFT_78309 hypothetical protein K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1]
D TRIREDRAFT_121061 SMAD/FHA protein kinase K06641 CHEK2; serine/threonine-protein kinase CHEK2 [EC:2.7.11.1]
D TRIREDRAFT_53004 hypothetical protein K02555 MIH1; M-phase inducer tyrosine phosphatase [EC:3.1.3.48]
D TRIREDRAFT_49213 ftt2; 14-3-3 class protein K06630 YWHAE; 14-3-3 protein epsilon
D TRIREDRAFT_121028 ftt1; hypothetical protein K06630 YWHAE; 14-3-3 protein epsilon
D TRIREDRAFT_67982 protein kinase K03114 SWE1; mitosis inhibitor protein kinase SWE1 [EC:2.7.11.1]
D TRIREDRAFT_70517 fork head transcription factor-like protein K24664 FKH; forkhead protein FKH
D TRIREDRAFT_123767 vacuolar sorting protein K12196 VPS4; vacuolar protein-sorting-associated protein 4
D TRIREDRAFT_119739 hypothetical protein K25059 SDE2; replication stress response regulator SDE2
B Other factors with a suspected DNA repair function
C DNA polymerases
D TRIREDRAFT_1702 hypothetical protein K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
C Nucleases
D TRIREDRAFT_3027 hypothetical protein K15340 DCLRE1A; DNA cross-link repair 1A protein
D TRIREDRAFT_75235 hypothetical protein K17815 EXO5; exonuclease V [EC:3.1.-.-]
D TRIREDRAFT_65156 hypothetical protein K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D TRIREDRAFT_122529 hypothetical protein K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D TRIREDRAFT_110882 hypothetical protein K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D TRIREDRAFT_105351 hypothetical protein K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D TRIREDRAFT_44960 hypothetical protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D TRIREDRAFT_57923 hypothetical protein K12861 BCAS2; pre-mRNA-splicing factor SPF27
D TRIREDRAFT_57391 hypothetical protein K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D TRIREDRAFT_67882 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D TRIREDRAFT_75529 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D TRIREDRAFT_74047 large subunit of ribonucleoside-diphosphate reductase K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D TRIREDRAFT_74235 hypothetical protein K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D TRIREDRAFT_5247 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D TRIREDRAFT_107680 phr1; DNA photolyase, class I K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E TRIREDRAFT_64117 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E TRIREDRAFT_68072 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E TRIREDRAFT_67658 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E TRIREDRAFT_40346 hypothetical protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E TRIREDRAFT_30578 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E TRIREDRAFT_30805 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D RecJ
D DNA ligase
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
D RecFOR pathway proteins
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D TRIREDRAFT_67882 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D TRIREDRAFT_75529 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024