+F Repair protein KO #

  DNA Repair and Recombination Proteins - Thermoanaerobacterium thermosaccharolyticum M0795

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D Thethe_00218 O-6-methylguanine DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E Thethe_02221 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E Thethe_02050 endonuclease III; DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E Thethe_00773 DNA helicase, Rad3 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D Thethe_02769 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Thethe_01365 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Thethe_02827 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D Thethe_00218 O-6-methylguanine DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E Thethe_00069 uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E Thethe_00074 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E Thethe_02050 endonuclease III; DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E Thethe_00825 apurinic endonuclease APN1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E Thethe_01521 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E Thethe_02168 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E Thethe_00624 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E Thethe_00623 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E Thethe_00628 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E Thethe_02540 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Thethe_00522 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Thethe_02169 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Thethe_02168 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F Thethe_00374 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F Thethe_00375 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F Thethe_00412 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F Thethe_01496 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F Thethe_00183 transcription-repair coupling factor Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E Thethe_01333 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E Thethe_01809 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E Thethe_01334 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E Thethe_01275 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E Thethe_01276 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E Thethe_00746 DNA-directed DNA polymerase III PolC K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E Thethe_01379 DNA polymerase III, alpha chain K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E Thethe_00002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E Thethe_02847 DNA polymerase sliding clamp subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E Thethe_01124 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E Thethe_00081 DNA polymerase III, delta'' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E Thethe_00042 DNA polymerase III, subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E Thethe_02168 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E Thethe_02540 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Thethe_00522 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Thethe_02169 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Thethe_02845 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E Thethe_02754 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E Thethe_02274 helicase, putative, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E Thethe_02902 ATP-dependent exoDNAse (exonuclease V), alpha subunit/helicase superfamily I member K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E Thethe_01356 protein RecA K03553 recA; recombination protein RecA E Thethe_01536 Holliday junction DNA helicase subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Thethe_01535 Holliday junction DNA helicase subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Thethe_01537 Holliday junction endonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E Thethe_01494 replication restart DNA helicase PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E Thethe_01350 ATPase involved in DNA repair K03546 sbcC; DNA repair protein SbcC/Rad50 E Thethe_01351 Exodeoxyribonuclease I subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E Thethe_01356 protein RecA K03553 recA; recombination protein RecA E Thethe_00350 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E Thethe_00004 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E Thethe_01477 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E Thethe_00923 putative transcriptional regulator with HTH domain K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E Thethe_01521 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Thethe_01153 DNA replication and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E Thethe_00044 DNA replication and repair protein RecR K06187 recR; recombination protein RecR E Thethe_01283 DNA replication and repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E Thethe_01536 Holliday junction DNA helicase subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Thethe_01535 Holliday junction DNA helicase subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Thethe_01537 Holliday junction endonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E Thethe_02656 CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E Thethe_01350 ATPase involved in DNA repair K03546 sbcC; DNA repair protein SbcC/Rad50 E Thethe_01351 Exodeoxyribonuclease I subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E Thethe_00684 Ku protein K10979 ku; DNA end-binding protein Ku E Thethe_00683 ATP dependent DNA ligase-like protein,ATP dependent DNA ligase family protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F Thethe_00009 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F Thethe_00008 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F Thethe_01427 DNA topoisomerase I, bacterial K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F Thethe_00256 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F Thethe_02837 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F Thethe_01521 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F Thethe_01153 DNA replication and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F Thethe_00044 DNA replication and repair protein RecR K06187 recR; recombination protein RecR F Thethe_02168 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F Thethe_00624 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F Thethe_00623 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D Thethe_02500 nucleotidyltransferase/DNA polymerase involved in DNA repair K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D Thethe_00489 nucleotidyltransferase/DNA polymerase involved in DNA repair K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D Thethe_01356 protein RecA K03553 recA; recombination protein RecA D Thethe_01340 SOS regulatory protein LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D Thethe_01675 SOS response transcriptional repressor, RecA-mediated autopeptidase K01356 lexA; repressor LexA [EC:3.4.21.88] D Thethe_01283 DNA replication and repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Thethe_02845 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Thethe_02754 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Thethe_01355 hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D Thethe_00704 DNA polymerase IV (family X) K02347 polX; DNA polymerase (family X) C DNA helicases C Modulation of nucleotide pools D Thethe_02769 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Thethe_01365 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Thethe_02827 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Thethe_00339 ribonucleoside-diphosphate reductase class II K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D Thethe_01372 exopolyphosphatase-like enzyme K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024