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Transcription Machinery - Tupaia chinensis (Chinese tree shrew)
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
E 102483652 POLR2A; RNA polymerase II subunit A K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
E 102489094 POLR2B; RNA polymerase II subunit B K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
E 102497233 POLR2C; RNA polymerase II subunit C K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
E 102469604 POLR2J; RNA polymerase II subunit J K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
D Pol II specific subunits
E 102478451 POLR2D; RNA polymerase II subunit D K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
E 102490374 POLR2G; RNA polymerase II subunit G K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 102501716 POLR2I; RNA polymerase II subunit I K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
D Pol I, II, III common subunits
E 102501578 POLR2E; RNA polymerase II subunit E K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 102467883 POLR2F; RNA polymerase II subunit F K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E 106736235 POLR2H; RNA polymerase II subunit H K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E 102492638 POLR2K; RNA polymerase II subunit K K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E 102477366 DNA-directed RNA polymerases I, II, and III subunit RPABC5-like K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
E 102472085 POLR2L; RNA polymerase II subunit L K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
E 102481735 GTF2A1; general transcription factor IIA subunit 1 K03122 TFIIA1; transcription initiation factor TFIIA large subunit
E 102496467 GTF2A2; general transcription factor IIA subunit 2 K03123 TFIIA2; transcription initiation factor TFIIA small subunit
D TFIIB
E 102485775 GTF2B; general transcription factor IIB K03124 TFIIB; transcription initiation factor TFIIB
D TFIID
E 102470240 TBP; TATA-box binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 102486811 TBPL2; TATA-box binding protein like 2 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 102498567 TBPL1; TATA-box binding protein like 1 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 102478225 TAF1; TATA-box binding protein associated factor 1 K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1]
E 102499375 TAF2; TATA-box binding protein associated factor 2 K03128 TAF2; transcription initiation factor TFIID subunit 2
E 102493378 TAF3; TATA-box binding protein associated factor 3 K14650 TAF3; transcription initiation factor TFIID subunit 3
E 102498512 TAF4B; TATA-box binding protein associated factor 4b K03129 TAF4; transcription initiation factor TFIID subunit 4
E 102469790 TAF4; TATA-box binding protein associated factor 4 K03129 TAF4; transcription initiation factor TFIID subunit 4
E 102486551 TAF5L; TATA-box binding protein associated factor 5 like K03130 TAF5; transcription initiation factor TFIID subunit 5
E 102501953 TAF5; TATA-box binding protein associated factor 5 K03130 TAF5; transcription initiation factor TFIID subunit 5
E 102489069 TAF6; TATA-box binding protein associated factor 6 K03131 TAF6; transcription initiation factor TFIID subunit 6
E 102489951 TAF6L; TATA-box binding protein associated factor 6 like K03131 TAF6; transcription initiation factor TFIID subunit 6
E 102475426 TAF7; TATA-box binding protein associated factor 7 K03132 TAF7; transcription initiation factor TFIID subunit 7
E 102497245 transcription initiation factor TFIID subunit 7 K03132 TAF7; transcription initiation factor TFIID subunit 7
E 102472675 transcription initiation factor TFIID subunit 7-like K03132 TAF7; transcription initiation factor TFIID subunit 7
E 102498879 TAF8; TATA-box binding protein associated factor 8 K14649 TAF8; transcription initiation factor TFIID subunit 8
E 102473906 transcription initiation factor TFIID subunit 9-like K14535 TAF9; transcription initiation factor TFIID subunit 9
E 102485773 TAF9; TATA-box binding protein associated factor 9 K14535 TAF9; transcription initiation factor TFIID subunit 9
E 102499720 TAF9B; TATA-box binding protein associated factor 9b K03133 TAF9B; transcription initiation factor TFIID subunit 9B
E 102489319 TAF10; TATA-box binding protein associated factor 10 K03134 TAF10; transcription initiation factor TFIID subunit 10
E 102503043 TAF11; TATA-box binding protein associated factor 11 K03135 TAF11; transcription initiation factor TFIID subunit 11
E 102492811 putative TAF11-like protein ENSP00000332601 K03135 TAF11; transcription initiation factor TFIID subunit 11
E 102495694 TAF12; TATA-box binding protein associated factor 12 K03126 TAF12; transcription initiation factor TFIID subunit 12
E 102480054 uncharacterized LOC102480054 K03127 TAF13; transcription initiation factor TFIID subunit 13
E 102502795 TAF13; TATA-box binding protein associated factor 13 K03127 TAF13; transcription initiation factor TFIID subunit 13
E 102478024 TAF15; TATA-box binding protein associated factor 15 K14651 TAF15; transcription initiation factor TFIID subunit 15
D TFIIE
E 102495819 GTF2E1; general transcription factor IIE subunit 1 K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
E 102502101 GTF2E2; general transcription factor IIE subunit 2 K03137 TFIIE2; transcription initiation factor TFIIE subunit beta
D TFIIF
E 102491331 GTF2F1; general transcription factor IIF subunit 1 K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha
E 102503380 GTF2F2; general transcription factor IIF subunit 2 K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-]
D TFIIH
E 102486096 GTF2H1; general transcription factor IIH subunit 1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 102488277 general transcription factor IIH subunit 2 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 102500281 GTF2H3; general transcription factor IIH subunit 3 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 102492935 GTF2H4; general transcription factor IIH subunit 4 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 102485907 ERCC3; ERCC excision repair 3, TFIIH core complex helicase subunit K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 102493875 ERCC2; ERCC excision repair 2, TFIIH core complex helicase subunit K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E 102495626 GTF2H5; general transcription factor IIH subunit 5 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 102498008 cyclin-dependent kinase 7-like K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 102481163 CDK7; cyclin dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 102490131 CDK-activating kinase assembly factor MAT1 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
E 102481216 MNAT1; MNAT1, CDK activating kinase assembly factor K10842 MNAT1; CDK-activating kinase assembly factor MAT1
E 102492839 CCNH; cyclin H K06634 CCNH; cyclin H
C Mediator complex
D Head
E 106734999 mediator of RNA polymerase II transcription subunit 6-like K15128 MED6; mediator of RNA polymerase II transcription subunit 6
E 102469582 MED6; mediator complex subunit 6 K15128 MED6; mediator of RNA polymerase II transcription subunit 6
E 102482970 MED8; mediator complex subunit 8 K15129 MED8; mediator of RNA polymerase II transcription subunit 8
E 102496411 MED11; mediator complex subunit 11 K15131 MED11; mediator of RNA polymerase II transcription subunit 11
E 102487378 MED17; mediator complex subunit 17 K15133 MED17; mediator of RNA polymerase II transcription subunit 17
E 102494345 MED18; mediator complex subunit 18 K15135 MED18; mediator of RNA polymerase II transcription subunit 18
E 102492084 MED19; mediator complex subunit 19 K15137 MED19; mediator of RNA polymerase II transcription subunit 19
E 102501229 mediator of RNA polymerase II transcription subunit 20 K13528 MED20; mediator of RNA polymerase II transcription subunit 20
E 102500822 mediator of RNA polymerase II transcription subunit 20-like K13528 MED20; mediator of RNA polymerase II transcription subunit 20
E 102477262 MED22; mediator complex subunit 22 K15139 MED22; mediator of RNA polymerase II transcription subunit 22
E 102469946 MED28; mediator complex subunit 28 K15141 MED28; mediator of RNA polymerase II transcription subunit 28
E 102485568 mediator of RNA polymerase II transcription subunit 28-like K15141 MED28; mediator of RNA polymerase II transcription subunit 28
E 102479072 MED29; mediator complex subunit 29 K15142 MED29; mediator of RNA polymerase II transcription subunit 29
E 102493696 MED30; mediator complex subunit 30 K15143 MED30; mediator of RNA polymerase II transcription subunit 30
D Middle
E 102478907 MED1; mediator complex subunit 1 K15144 MED1; mediator of RNA polymerase II transcription subunit 1
E 102492748 MED4; mediator complex subunit 4 K15146 MED4; mediator of RNA polymerase II transcription subunit 4
E 102472678 MED7; mediator complex subunit 7 K15148 MED7; mediator of RNA polymerase II transcription subunit 7
E 102480254 uncharacterized LOC102480254 K15148 MED7; mediator of RNA polymerase II transcription subunit 7
E 102481633 MED9; mediator complex subunit 9 K15149 MED9; mediator of RNA polymerase II transcription subunit 9
E 102470623 MED10; mediator complex subunit 10 K15151 MED10; mediator of RNA polymerase II transcription subunit 10
E 102491075 MED21; mediator complex subunit 21 K15152 MED21; mediator of RNA polymerase II transcription subunit 21
E 102475497 MED31; mediator complex subunit 31 K15153 MED31; mediator of RNA polymerase II transcription subunit 31
D Tail
E 102499306 MED14; mediator complex subunit 14 K15156 MED14; mediator of RNA polymerase II transcription subunit 14
E 102500164 MED15; mediator complex subunit 15 K15157 MED15; mediator of RNA polymerase II transcription subunit 15
E 102497861 MED16; mediator complex subunit 16 K15159 MED16; mediator of RNA polymerase II transcription subunit 16
D CDK-module
E 102483828 CDK19; cyclin dependent kinase 19 K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23]
E 102478721 CDK8; cyclin dependent kinase 8 K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23]
E 102493845 CCNC; cyclin C K15161 CCNC; cyclin-C
E 102496935 MED12; mediator complex subunit 12 K15162 MED12; mediator of RNA polymerase II transcription subunit 12
E 102484305 MED12L; mediator complex subunit 12 like K15162 MED12; mediator of RNA polymerase II transcription subunit 12
E 102492566 MED13L; mediator complex subunit 13 like K15164 MED13; mediator of RNA polymerase II transcription subunit 13
E 102492831 MED13; mediator complex subunit 13 K15164 MED13; mediator of RNA polymerase II transcription subunit 13
D Other mediators
E 102480074 MED23; mediator complex subunit 23 K15166 MED23; mediator of RNA polymerase II transcription subunit 23
E 102493847 MED24; mediator complex subunit 24 K15167 MED24; mediator of RNA polymerase II transcription subunit 24
E 102486529 MED25; mediator complex subunit 25 K15168 MED25; mediator of RNA polymerase II transcription subunit 25
E 102487931 MED26; mediator complex subunit 26 K15169 MED26; mediator of RNA polymerase II transcription subunit 26
E 102468012 MED27; mediator complex subunit 27 K15170 MED27; mediator of RNA polymerase II transcription subunit 27
C Coactivators
D SAGA/TFTC/STAGA complex
E 102480159 KAT2A; lysine acetyltransferase 2A K06062 PCAF; histone acetyltransferase [EC:2.3.1.48]
E 102476156 KAT2B; lysine acetyltransferase 2B K06062 PCAF; histone acetyltransferase [EC:2.3.1.48]
E 102491714 TRRAP; transformation/transcription domain associated protein K08874 TRRAP; transformation/transcription domain-associated protein
E 102470130 SUPT3H; SPT3 homolog, SAGA and STAGA complex component K11313 SUPT3H; transcription initiation protein SPT3
E 102496291 TADA2A; transcriptional adaptor 2A K11314 TADA2A; transcriptional adapter 2-alpha
E 102494245 TADA2B; transcriptional adaptor 2B K15127 TADA2B; transcriptional adapter 2-beta
E 102472707 TADA3; transcriptional adaptor 3 K11315 TADA3; transcriptional adapter 3
E 102501211 TADA1; transcriptional adaptor 1 K11317 TADA1; transcriptional adapter 1
E 102499375 TAF2; TATA-box binding protein associated factor 2 K03128 TAF2; transcription initiation factor TFIID subunit 2
E 102498512 TAF4B; TATA-box binding protein associated factor 4b K03129 TAF4; transcription initiation factor TFIID subunit 4
E 102469790 TAF4; TATA-box binding protein associated factor 4 K03129 TAF4; transcription initiation factor TFIID subunit 4
E 102486551 TAF5L; TATA-box binding protein associated factor 5 like K03130 TAF5; transcription initiation factor TFIID subunit 5
E 102501953 TAF5; TATA-box binding protein associated factor 5 K03130 TAF5; transcription initiation factor TFIID subunit 5
E 102489069 TAF6; TATA-box binding protein associated factor 6 K03131 TAF6; transcription initiation factor TFIID subunit 6
E 102489951 TAF6L; TATA-box binding protein associated factor 6 like K03131 TAF6; transcription initiation factor TFIID subunit 6
E 102475426 TAF7; TATA-box binding protein associated factor 7 K03132 TAF7; transcription initiation factor TFIID subunit 7
E 102497245 transcription initiation factor TFIID subunit 7 K03132 TAF7; transcription initiation factor TFIID subunit 7
E 102472675 transcription initiation factor TFIID subunit 7-like K03132 TAF7; transcription initiation factor TFIID subunit 7
E 102473906 transcription initiation factor TFIID subunit 9-like K14535 TAF9; transcription initiation factor TFIID subunit 9
E 102485773 TAF9; TATA-box binding protein associated factor 9 K14535 TAF9; transcription initiation factor TFIID subunit 9
E 102499720 TAF9B; TATA-box binding protein associated factor 9b K03133 TAF9B; transcription initiation factor TFIID subunit 9B
E 102489319 TAF10; TATA-box binding protein associated factor 10 K03134 TAF10; transcription initiation factor TFIID subunit 10
E 102495694 TAF12; TATA-box binding protein associated factor 12 K03126 TAF12; transcription initiation factor TFIID subunit 12
E 102499182 ATXN7L3; ataxin 7 like 3 K11363 SGF11; SAGA-associated factor 11
E 102483881 CCDC101; SAGA-associated factor 29 homolog K11364 SGF29; SAGA-associated factor 29
E 102502470 SUPT7L; SPT7-like STAGA complex gamma subunit K11316 SUPT7L; STAGA complex 65 subunit gamma
E 102488792 ATXN7L1; ataxin 7 like 1 K11318 ATXN7; ataxin-7
E 102474515 ATXN7L2; ataxin 7 like 2 K11318 ATXN7; ataxin-7
E 102503152 ATXN7; ataxin 7 K11318 ATXN7; ataxin-7
E 102502274 CHD1; chromodomain helicase DNA binding protein 1 K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
E 102476061 ENY2; ENY2, transcription and export complex 2 subunit K11368 ENY2; enhancer of yellow 2 transcription factor
E 102501909 USP22; ubiquitin specific peptidase 22 K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12]
E 102483611 USP27X; ubiquitin specific peptidase 27, X-linked K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12]
E 102478444 SF3B3; splicing factor 3b subunit 3 K12830 SF3B3; splicing factor 3B subunit 3
D BAF/PBAF complex
E 102472217 SMARCA4; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
E 102478173 SMARCA2; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
E 102487868 SMARCB1; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
E 102492549 SMARCC2; SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
E 102493020 SMARCC1; SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
E 102494041 SMARCD2; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
E 102501247 SMARCD3; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
E 102475242 SMARCD1; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
E 102501022 SMARCE1; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 K11651 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
E 102479926 ACTB; actin beta K05692 ACTB_G1; actin beta/gamma 1
E 102498431 ACTG1; actin gamma 1 K05692 ACTB_G1; actin beta/gamma 1
E 102484573 ACTL6A; actin like 6A K11340 ACTL6A; actin-like protein 6A
E 102477916 ACTL6B; actin like 6B K11652 ACTL6B; actin-like protein 6B
E 102467923 ARID1B; AT-rich interaction domain 1B K11653 ARID1; AT-rich interactive domain-containing protein 1
E 102485388 ARID1A; AT-rich interaction domain 1A K11653 ARID1; AT-rich interactive domain-containing protein 1
E 102474832 ARID2; AT-rich interaction domain 2 K11765 ARID2; AT-rich interactive domain-containing protein 2
E 102493831 PBRM1; polybromo 1 K11757 PBRM1; protein polybromo-1
D SWI/SNF complex
E 102487868 SMARCB1; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
D RSC complex
D Others
E 102501379 SUB1; SUB1 homolog, transcriptional regulator K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15
E 102486252 activated RNA polymerase II transcriptional coactivator p15 K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15
E 102499003 activated RNA polymerase II transcriptional coactivator p15 K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15
E 106734047 activated RNA polymerase II transcriptional coactivator p15-like K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15
E 102498739 CCAR1; cell division cycle and apoptosis regulator 1 K25827 CCAR1; cell division cycle and apoptosis regulator protein 1
E 102481985 CALCOCO1; calcium binding and coiled-coil domain 1 K25828 CALCOCO1; calcium-binding and coiled-coil domain-containing protein 1
C Other transcription-related factors
D Transcription elongation factors
E 102477930 TCEA1; transcription elongation factor A1 K03145 TFIIS; transcription elongation factor S-II
E 102493600 TCEA2; transcription elongation factor A2 K03145 TFIIS; transcription elongation factor S-II
E 102480783 TCEA3; transcription elongation factor A3 K03145 TFIIS; transcription elongation factor S-II
E 102501425 SUPT4H1; SPT4 homolog, DSIF elongation factor subunit K15171 SUPT4H1; transcription elongation factor SPT4
E 102472752 SUPT5H; SPT5 homolog, DSIF elongation factor subunit K15172 SUPT5H; transcription elongation factor SPT5
E 102493938 SUPT6H; SPT6 homolog, histone chaperone K11292 SUPT6H; transcription elongation factor SPT6
D Transcription termination factor
E 102486542 TTF2; transcription termination factor 2 K15173 TTF2; transcription termination factor 2 [EC:5.6.2.-]
E 102478092 PCF11; PCF11 cleavage and polyadenylation factor subunit K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
E 102493085 CPSF1; cleavage and polyadenylation specific factor 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 102497729 CPSF3; cleavage and polyadenylation specific factor 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 102478701 CPSF4L; cleavage and polyadenylation specific factor 4 like K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 102490025 CPSF4; cleavage and polyadenylation specific factor 4 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 102476316 PPP1CC; protein phosphatase 1 catalytic subunit gamma K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 102496931 PPP1CB; protein phosphatase 1 catalytic subunit beta K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 102469176 serine/threonine-protein phosphatase PP1-gamma catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 102477186 PPP1CA; protein phosphatase 1 catalytic subunit alpha K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 102488880 SYMPK; symplekin K06100 SYMPK; symplekin
E 102486782 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E 102495034 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E 102474206 SSU72; SSU72 homolog, RNA polymerase II CTD phosphatase K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E 102490729 XRN2; 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 102481700 DXO; decapping exoribonuclease K14845 RAI1; RAT1-interacting protein
E 102496485 RPRD1B; regulation of nuclear pre-mRNA domain containing 1B K15559 RTT103; regulator of Ty1 transposition protein 103
E 102483498 RPRD1A; regulation of nuclear pre-mRNA domain containing 1A K15559 RTT103; regulator of Ty1 transposition protein 103
E 102494606 SFPQ; splicing factor proline and glutamine rich K13219 SFPQ; splicing factor, proline- and glutamine-rich
E 102489542 SCAF8; SR-related CTD associated factor 8 K13191 RBM16; RNA-binding protein 16
E 102477914 SCAF4; SR-related CTD associated factor 4 K13167 SCAF4; SR-related and CTD-associated factor 4
E 102488507 SETX; senataxin K10706 SETX; senataxin [EC:5.6.2.-]
E 102478969 PIN1; peptidylprolyl cis/trans isomerase, NIMA-interacting 1 K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8]
D PAF1 complex
E 102469775 PAF1; PAF1 homolog, Paf1/RNA polymerase II complex component K15174 PAF1; RNA polymerase II-associated factor 1
E 102495547 CDC73; cell division cycle 73 K15175 CDC73; parafibromin
E 102503094 CTR9; CTR9 homolog, Paf1/RNA polymerase II complex component K15176 CTR9; RNA polymerase-associated protein CTR9
E 102497137 RNA polymerase-associated protein LEO1-like K15177 LEO1; RNA polymerase-associated protein LEO1
E 102496722 LEO1; LEO1 homolog, Paf1/RNA polymerase II complex component K15177 LEO1; RNA polymerase-associated protein LEO1
E 102477087 RTF1; RTF1 homolog, Paf1/RNA polymerase II complex component K15178 RTF1; RNA polymerase-associated protein RTF1
D NELF complex
E 102467900 NELFA; negative elongation factor complex member A K15179 WHSC2; negative elongation factor A
E 102476585 NELFB; negative elongation factor complex member B K15180 COBRA1; negative elongation factor B
E 102489155 NELFCD; negative elongation factor complex member C/D K15181 TH1L; negative elongation factor C/D
E 102481281 NELFE; negative elongation factor complex member E K15182 RDBP; negative elongation factor E
D Super elongation complex (SEC)
E 102501789 ELL; elongation factor for RNA polymerase II K15183 ELL; RNA polymerase II elongation factor ELL
E 102472504 ELL3; elongation factor for RNA polymerase II 3 K15183 ELL; RNA polymerase II elongation factor ELL
E 102481434 ELL2; elongation factor for RNA polymerase II 2 K15183 ELL; RNA polymerase II elongation factor ELL
E 102473626 AFF1; AF4/FMR2 family member 1 K15184 AFF1; AF4/FMR2 family member 1
E 102490326 AFF4; AF4/FMR2 family member 4 K15185 AFF4; AF4/FMR2 family member 4
E 102483456 EAF2; ELL associated factor 2 K15186 EAF; ELL-associated factor
E 102488288 EAF1; ELL associated factor 1 K15186 EAF; ELL-associated factor
E 102497166 MLLT3; MLLT3, super elongation complex subunit K15187 MLLT1_3; YEATS domain-containing protein 1/3
E 102473843 MLLT1; MLLT1, super elongation complex subunit K15187 MLLT1_3; YEATS domain-containing protein 1/3
E 102503104 CCNT1; cyclin T1 K15188 CCNT; cyclin T
E 102476227 CCNT2; cyclin T2 K15188 CCNT; cyclin T
E 102480019 CDK9; cyclin dependent kinase 9 K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23]
D Little elongation complex (LEC)
E 102501789 ELL; elongation factor for RNA polymerase II K15183 ELL; RNA polymerase II elongation factor ELL
E 102472504 ELL3; elongation factor for RNA polymerase II 3 K15183 ELL; RNA polymerase II elongation factor ELL
E 102481434 ELL2; elongation factor for RNA polymerase II 2 K15183 ELL; RNA polymerase II elongation factor ELL
E 102498099 ICE1; interactor of little elongation complex ELL subunit 1 K26143 ICE1; little elongation complex subunit 1
E 102492894 ICE2; interactor of little elongation complex ELL subunit 2 K26144 ICE2; little elongation complex subunit 2
E 102486776 ZC3H8; zinc finger CCCH-type containing 8 K24388 ZC3H8; zinc finger CCCH domain-containing protein 8
D Brd4/P-TEFb complex
E 102470944 BRD4; bromodomain containing 4 K11722 BRD4; bromodomain-containing protein 4
E 102503104 CCNT1; cyclin T1 K15188 CCNT; cyclin T
E 102476227 CCNT2; cyclin T2 K15188 CCNT; cyclin T
E 102480019 CDK9; cyclin dependent kinase 9 K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23]
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
E 102499061 HEXIM1; hexamethylene bisacetamide inducible 1 K15189 HEXIM1_2; protein HEXIM1/2
E 102499485 HEXIM2; hexamethylene bisacetamide inducible 2 K15189 HEXIM1_2; protein HEXIM1/2
E 102496876 MEPCE; methylphosphate capping enzyme K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-]
E 102486820 LARP7; La ribonucleoprotein domain family member 7 K15191 LARP7; La-related protein 7
E 102503104 CCNT1; cyclin T1 K15188 CCNT; cyclin T
E 102476227 CCNT2; cyclin T2 K15188 CCNT; cyclin T
E 102480019 CDK9; cyclin dependent kinase 9 K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23]
D DBIRD complex
E 102482557 CCAR2; cell cycle and apoptosis regulator 2 K25816 CCAR2; cell cycle and apoptosis regulator protein 2
E 102495492 ZNF326; zinc finger protein 326 K13204 ZNF326; zinc finger protein 326
D Others
E 102499064 GTF2I; general transcription factor IIi K03121 TFII-I; transcription initiation factor TFII-I
E 102497572 GTF2IRD1; GTF2I repeat domain containing 1 K27274 GTF2IRD1; general transcription factor II-I repeat domain-containing protein 1
E 102491831 BTAF1; B-TFIID TATA-box binding protein associated factor 1 K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-]
E 102483541 DR1; down-regulator of transcription 1 K21751 DR1; down-regulator of transcription 1
E 102480123 DRAP1; DR1 associated protein 1 K21752 DRAP1; Dr1-associated corepressor
E 102490104 SPTY2D1; SPT2 chromatin protein domain containing 1 K15193 SPTY2D1; protein SPT2
E 102489668 AFF2; AF4/FMR2 family member 2 K15194 AFF2; AF4/FMR2 family member 2
E 102475223 AFF3; AF4/FMR2 family member 3 K15195 AFF3; AF4/FMR2 family member 3
E 102479838 CTDP1; CTD phosphatase subunit 1 K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16]
E 102501309 CTDSP1; CTD small phosphatase 1 K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]
E 102502395 CTDSPL; CTD small phosphatase like K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]
E 102488982 CTDSP2; CTD small phosphatase 2 K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]
E 102501004 IWS1; IWS1, SUPT6H interacting protein K17498 SPN1; transcription factor SPN1
E 102499404 CSRNP3; cysteine and serine rich nuclear protein 3 K17494 CSRNP; cysteine/serine-rich nuclear protein
E 102494445 CSRNP1; cysteine and serine rich nuclear protein 1 K17494 CSRNP; cysteine/serine-rich nuclear protein
E 102471429 CSRNP2; cysteine and serine rich nuclear protein 2 K17494 CSRNP; cysteine/serine-rich nuclear protein
E 102475575 RPAP1; RNA polymerase II associated protein 1 K20826 RPAP1; RNA polymerase II-associated protein 1
E 102488864 RPAP2; RNA polymerase II associated protein 2 K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16]
E 102501000 RPAP3; RNA polymerase II associated protein 3 K23002 RPAP3; RNA polymerase II-associated protein 3
E 102482175 CCNK; cyclin K K23326 CCNK; cyclin K
E 102468406 GPN1; GPN-loop GTPase 1 K24104 GPN; GPN-loop GTPase
E 102488747 GPN2; GPN-loop GTPase 2 K24104 GPN; GPN-loop GTPase
E 102498887 GPN3; GPN-loop GTPase 3 K24104 GPN; GPN-loop GTPase
E 102483801 GPN-loop GTPase 3 K24104 GPN; GPN-loop GTPase
E 102487232 TCEAL1; transcription elongation factor A like 1 K26769 TCEAL1; transcription elongation factor A protein-like 1
B RNA polymerase III system
C RNA polymerase III
D Core subunits
E 102473172 POLR3A; RNA polymerase III subunit A K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
E 102502284 POLR3B; RNA polymerase III subunit B K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
E 102480106 POLR1C; RNA polymerase I subunit C K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E 102470835 POLR1D; DNA-directed RNA polymerases I and III subunit RPAC2 K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol III specific subunits
E 102467947 POLR3C; RNA polymerase III subunit C K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3
E 102480462 POLR3D; RNA polymerase III subunit D K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4
E 102467700 POLR3E; RNA polymerase III subunit E K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5
E 102501220 POLR3F; RNA polymerase III subunit F K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6
E 102473596 POLR3G; RNA polymerase III subunit G K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7
E 102497030 POLR3GL; RNA polymerase III subunit G like K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7
E 102500022 POLR3H; RNA polymerase III subunit H K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8
E 102472388 CRCP; CGRP receptor component K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9
E 102501204 POLR3K; RNA polymerase III subunit K K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11
E 102495979 DNA-directed RNA polymerase III subunit RPC10-like K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11
D Pol I, II, III common subunits
E 102501578 POLR2E; RNA polymerase II subunit E K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 102467883 POLR2F; RNA polymerase II subunit F K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E 106736235 POLR2H; RNA polymerase II subunit H K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E 102492638 POLR2K; RNA polymerase II subunit K K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E 102477366 DNA-directed RNA polymerases I, II, and III subunit RPABC5-like K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
E 102472085 POLR2L; RNA polymerase II subunit L K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
C Basal transcription factors
D TFIIIA
E 102477278 GTF3A; general transcription factor IIIA K09191 GTF3A; general transcription factor IIIA
D TFIIIB
E 102470240 TBP; TATA-box binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 102486811 TBPL2; TATA-box binding protein like 2 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 102498567 TBPL1; TATA-box binding protein like 1 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 102495116 BRF1; BRF1, RNA polymerase III transcription initiation factor subunit K15196 BRF1; transcription factor IIIB 90 kDa subunit
E 102491628 BRF2; BRF2, RNA polymerase III transcription initiation factor subunit K15197 BRF2; transcription factor IIIB 50 kDa subunit
E 102473712 BDP1; B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB K15198 BDP1; transcription factor TFIIIB component B''
D TFIIIC
E 102468428 GTF3C1; general transcription factor IIIC subunit 1 K15199 GTF3C1; general transcription factor 3C polypeptide 1
E 102474762 GTF3C2; general transcription factor IIIC subunit 2 K15200 GTF3C2; general transcription factor 3C polypeptide 2
E 102472414 GTF3C3; general transcription factor IIIC subunit 3 K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
E 102487525 GTF3C4; general transcription factor IIIC subunit 4 K11310 GTF3C4; general transcription factor 3C polypeptide 4 [EC:2.3.1.48]
E 102480814 GTF3C5; general transcription factor IIIC subunit 5 K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
E 102493863 GTF3C6; general transcription factor IIIC subunit 6 K15203 GTF3C6; general transcription factor 3C polypeptide 6
D TFIIIC, fungi type
E 102480814 GTF3C5; general transcription factor IIIC subunit 5 K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
E 102472414 GTF3C3; general transcription factor IIIC subunit 3 K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
E 102483999 SNAPC1; small nuclear RNA activating complex polypeptide 1 K15208 SNAPC1; snRNA-activating protein complex subunit 1
E 102499915 SNAPC2; small nuclear RNA activating complex polypeptide 2 K15209 SNAPC2; snRNA-activating protein complex subunit 2
E 102489063 SNAPC3; small nuclear RNA activating complex polypeptide 3 K15210 SNAPC3; snRNA-activating protein complex subunit 3
E 102489775 SNAPC5; small nuclear RNA activating complex polypeptide 5 K15211 SNAPC5; snRNA-activating protein complex subunit 5
D Octamer transcription factors
E 102487479 POU2F2; POU class 2 homeobox 2 K09364 POU2F; POU domain transcription factor, class 2
E 102502915 POU2F1; POU class 2 homeobox 1 K09364 POU2F; POU domain transcription factor, class 2
E 102478855 POU2F3; POU class 2 homeobox 3 K09364 POU2F; POU domain transcription factor, class 2
E 102480369 POU5F1; POU class 5 homeobox 1 K09367 POU5F; POU domain transcription factor, class 5
D Others
E 102499988 ZNF143; zinc finger protein 143 K20828 ZNF143_76; zinc finger protein 143/76
E 102499538 ZNF76; zinc finger protein 76 K20828 ZNF143_76; zinc finger protein 143/76
E 102491545 MAF1; MAF1 homolog, negative regulator of RNA polymerase III K25817 MAF1; repressor of RNA polymerase III transcription MAF1
B RNA polymerase I system
C RNA polymerase I
D Core subunits
E 102501687 POLR1A; RNA polymerase I subunit A K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
E 102472451 POLR1B; RNA polymerase I subunit B K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
E 102480106 POLR1C; RNA polymerase I subunit C K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E 102470835 POLR1D; DNA-directed RNA polymerases I and III subunit RPAC2 K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol I specific subunits
E 102476686 POLR1E; RNA polymerase I subunit E K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49
E 102493564 TWISTNB; TWIST neighbor K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43
E 102483563 CD3EAP; CD3e molecule associated protein K25436 POLR1G; DNA-directed RNA polymerase I subunit RPA34
E 102501900 ZNRD1; zinc ribbon domain containing 1 K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12
D Pol I, II, III common subunits
E 102501578 POLR2E; RNA polymerase II subunit E K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 102467883 POLR2F; RNA polymerase II subunit F K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E 106736235 POLR2H; RNA polymerase II subunit H K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E 102492638 POLR2K; RNA polymerase II subunit K K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E 102477366 DNA-directed RNA polymerases I, II, and III subunit RPABC5-like K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
E 102472085 POLR2L; RNA polymerase II subunit L K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
C Basal transcription factors
D SL1/TIF-1B
E 102470240 TBP; TATA-box binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 102486811 TBPL2; TATA-box binding protein like 2 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 102498567 TBPL1; TATA-box binding protein like 1 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 102493013 TAF1A; TATA-box binding protein associated factor, RNA polymerase I subunit A K15212 TAF1A; TATA box-binding protein-associated factor RNA polymerase I subunit A
E 102477929 TAF1B; TATA-box binding protein associated factor, RNA polymerase I subunit B K15213 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B
E 102473697 TAF1C; TATA-box binding protein associated factor, RNA polymerase I subunit C K15214 TAF1C; TATA box-binding protein-associated factor RNA polymerase I subunit C
E 102497635 TATA box-binding protein-associated factor RNA polymerase I subunit D-like K15215 TAF1D; TATA box-binding protein-associated factor RNA polymerase I subunit D
E 102483046 TAF1D; TATA-box binding protein associated factor, RNA polymerase I subunit D K15215 TAF1D; TATA box-binding protein-associated factor RNA polymerase I subunit D
E 102495699 TATA box-binding protein-associated factor RNA polymerase I subunit D-like K15215 TAF1D; TATA box-binding protein-associated factor RNA polymerase I subunit D
E 102494081 TATA box-binding protein-associated factor RNA polymerase I subunit D K15215 TAF1D; TATA box-binding protein-associated factor RNA polymerase I subunit D
C Other transcription-related factors
D UBF
E 102497950 UBTF; upstream binding transcription factor, RNA polymerase I K09273 UBTF; upstream-binding transcription factor
D Transcription initiation factors
E 102468835 RRN3; RRN3 homolog, RNA polymerase I transcription factor K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3
D Transcription elongation factors
E 102501425 SUPT4H1; SPT4 homolog, DSIF elongation factor subunit K15171 SUPT4H1; transcription elongation factor SPT4
E 102472752 SUPT5H; SPT5 homolog, DSIF elongation factor subunit K15172 SUPT5H; transcription elongation factor SPT5
D NoRC (nucleolar remodeling complex)
E 102499522 SMARCA5; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
E 102483078 BAZ2A; bromodomain adjacent to zinc finger domain 2A K15224 BAZ2A; bromodomain adjacent to zinc finger domain protein 2A
D CTDK-I complex
D Transcription termination factors
E 102502496 TTF1; transcription termination factor 1 K15225 TTF1; transcription termination factor 1
E 102481859 PTRF; polymerase I and transcript release factor K19387 PTRF; polymerase I and transcript release factor
D Others
E 102493531 NOLC1; nucleolar and coiled-body phosphoprotein 1 K25818 NOLC1; nucleolar and coiled-body phosphoprotein 1
#
AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
D Sigma factors
C Other transcription-related factors
D RNA polymerase-associated proteins
D Transcription elongation factors
D Transcription termination factor
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
E 102485775 GTF2B; general transcription factor IIB K03124 TFIIB; transcription initiation factor TFIIB
D TFE
E 102495819 GTF2E1; general transcription factor IIE subunit 1 K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D TFS
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024