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  Transcription Machinery - Uncinocarpus reesii

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AEukaryotic type B RNA polymerase II system C RNA polymerase II D Core subunits E UREG_07095 DNA-directed RNA polymerase II largest subunit K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] E UREG_02143 DNA-directed RNA polymerase II 138 kDa polypeptide K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] E UREG_02142 DNA-directed RNA polymerase II 138 kDa polypeptide K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] E UREG_06452 DNA-directed RNA polymerase II 45 kDa polypeptide K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 E UREG_07793 DNA-directed RNA polymerase II 13.3 kDa polypeptide K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 D Pol II specific subunits E UREG_01395 DNA-directed RNA polymerase II 16 kDa polypeptide K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 E UREG_01562 DNA-directed RNA polymerase II 19 kDa polypeptide K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 E UREG_00801 hypothetical protein K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 D Pol I, II, III common subunits E UREG_07175 DNA-directed RNA polymerases II 24 kDa polypeptide K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 E UREG_00664 hypothetical protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 D Pol IV and V specific subunits C Basal transcription factors D TFIIA E UREG_07104 hypothetical protein K03122 TFIIA1; transcription initiation factor TFIIA large subunit E UREG_00358 transcription initiation factor IIA gamma chain K03123 TFIIA2; transcription initiation factor TFIIA small subunit D TFIIB E UREG_07398 transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D TFIID E UREG_07344 TATA-box binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein E UREG_01025 hypothetical protein K23358 TAF1; transcription initiation factor TFIID subunit 1, fungi type [EC:2.3.1.48] E UREG_01548 hypothetical protein K03128 TAF2; transcription initiation factor TFIID subunit 2 E UREG_06750 hypothetical protein K03130 TAF5; transcription initiation factor TFIID subunit 5 E UREG_03864 similar to transcription initiation factor tfiid 60 kd subu nit K03131 TAF6; transcription initiation factor TFIID subunit 6 E UREG_01369 hypothetical protein K03132 TAF7; transcription initiation factor TFIID subunit 7 E UREG_07138 transcription initiation factor TFIID subunit 9 K03133 TAF9B; transcription initiation factor TFIID subunit 9B E UREG_05199 hypothetical protein K03134 TAF10; transcription initiation factor TFIID subunit 10 E UREG_03866 hypothetical protein K03135 TAF11; transcription initiation factor TFIID subunit 11 E UREG_00525 hypothetical protein K03126 TAF12; transcription initiation factor TFIID subunit 12 E UREG_05767 hypothetical protein K03127 TAF13; transcription initiation factor TFIID subunit 13 E UREG_05051 hypothetical protein K03140 TAF14; transcription initiation factor TFIID/TFIIF subunit E UREG_05537 hypothetical protein K14651 TAF15; transcription initiation factor TFIID subunit 15 D TFIIE E UREG_00808 hypothetical protein K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha E UREG_05392 hypothetical protein K03137 TFIIE2; transcription initiation factor TFIIE subunit beta D TFIIF E UREG_02555 hypothetical protein K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha E UREG_02690 hypothetical protein K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] D TFIIH E UREG_05319 hypothetical protein K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 E UREG_04075 suppressor of stem-loop protein 1 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 E UREG_05209 hypothetical protein K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 E UREG_02632 hypothetical protein K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 E UREG_03902 DNA repair helicase RAD25 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] E UREG_07205 DNA repair helicase RAD3 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] E UREG_07896 hypothetical protein K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit E UREG_07806 serine/threonine-protein kinase crk1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] E UREG_02497 hypothetical protein K10842 MNAT1; CDK-activating kinase assembly factor MAT1 E UREG_04292 hypothetical protein K06634 CCNH; cyclin H C Mediator complex D Head E UREG_03052 hypothetical protein K15128 MED6; mediator of RNA polymerase II transcription subunit 6 E UREG_02773 hypothetical protein K15130 MED8; mediator of RNA polymerase II transcription subunit 8, fungi type E UREG_02794 hypothetical protein K15134 SRB4; mediator of RNA polymerase II transcription subunit 17, fungi type E UREG_01921 hypothetical protein K15136 SRB5; mediator of RNA polymerase II transcription subunit 18, fungi type D Middle E UREG_06797 hypothetical protein K15147 MED5; mediator of RNA polymerase II transcription subunit 5 E UREG_01315 hypothetical protein K15148 MED7; mediator of RNA polymerase II transcription subunit 7 E UREG_02050 hypothetical protein K15151 MED10; mediator of RNA polymerase II transcription subunit 10 E UREG_06518 hypothetical protein K15152 MED21; mediator of RNA polymerase II transcription subunit 21 E UREG_07546 hypothetical protein K15153 MED31; mediator of RNA polymerase II transcription subunit 31 D Tail E UREG_05673 hypothetical protein K15156 MED14; mediator of RNA polymerase II transcription subunit 14 E UREG_03408 hypothetical protein K15160 SIN4; mediator of RNA polymerase II transcription subunit 16, fungi type D CDK-module E UREG_00175 meiotic mRNA stability protein kinase UME5 K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] E UREG_00458 hypothetical protein K15163 SRB8; mediator of RNA polymerase II transcription subunit 12, fungi type E UREG_01150 hypothetical protein K15165 SSN2; mediator of RNA polymerase II transcription subunit 13, fungi type D Other mediators C Coactivators D SAGA/TFTC/STAGA complex E UREG_00602 histone acetyltransferase GCN5 K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] E UREG_03319 histone acetyltransferase GCN5 K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] E UREG_03953 hypothetical protein K08874 TRRAP; transformation/transcription domain-associated protein E UREG_07191 protein spt3 K11313 SUPT3H; transcription initiation protein SPT3 E UREG_07487 hypothetical protein K11359 SPT7; transcriptional activator SPT7 E UREG_03751 hypothetical protein K11360 SPT8; transcriptional activator SPT8 E UREG_02921 hypothetical protein K11361 SPT20; transcription factor SPT20 E UREG_02219 hypothetical protein K11314 TADA2A; transcriptional adapter 2-alpha E UREG_06610 hypothetical protein K11315 TADA3; transcriptional adapter 3 E UREG_01548 hypothetical protein K03128 TAF2; transcription initiation factor TFIID subunit 2 E UREG_06750 hypothetical protein K03130 TAF5; transcription initiation factor TFIID subunit 5 E UREG_03864 similar to transcription initiation factor tfiid 60 kd subu nit K03131 TAF6; transcription initiation factor TFIID subunit 6 E UREG_01369 hypothetical protein K03132 TAF7; transcription initiation factor TFIID subunit 7 E UREG_07138 transcription initiation factor TFIID subunit 9 K03133 TAF9B; transcription initiation factor TFIID subunit 9B E UREG_05199 hypothetical protein K03134 TAF10; transcription initiation factor TFIID subunit 10 E UREG_00525 hypothetical protein K03126 TAF12; transcription initiation factor TFIID subunit 12 E UREG_04455 hypothetical protein K11364 SGF29; SAGA-associated factor 29 E UREG_03425 CHD1 protein K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] E UREG_05419 hypothetical protein K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] E UREG_03498 pre-mRNA splicing factor rse1 K12830 SF3B3; splicing factor 3B subunit 3 D BAF/PBAF complex E UREG_04869 hypothetical protein K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 E UREG_06366 hypothetical protein K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C E UREG_07312 hypothetical protein K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D D SWI/SNF complex E UREG_07450 hypothetical protein K11771 SWI1; SWI/SNF chromatin-remodeling complex subunit SWI1 E UREG_04333 SNF2-family ATP dependent chromatin remodeling factor snf21 K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-] E UREG_04869 hypothetical protein K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 E UREG_02535 hypothetical protein K11768 ARP9; actin-related protein 9 E UREG_05051 hypothetical protein K03140 TAF14; transcription initiation factor TFIID/TFIIF subunit D RSC complex E UREG_06971 hypothetical protein K11756 RSC1_2; chromatin structure-remodeling complex subunit RSC1/2 E UREG_07335 similar to nuclear localization protein K11761 NPL6; chromatin structure-remodeling complex protein RSC7 E UREG_01193 hypothetical protein K11763 RSC9; chromatin structure-remodeling complex subunit RSC9 E UREG_02535 hypothetical protein K11768 ARP9; actin-related protein 9 E UREG_05639 hypothetical protein K11770 SFH1; chromatin structure-remodeling complex subunit SFH1 E UREG_04333 SNF2-family ATP dependent chromatin remodeling factor snf21 K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-] D Others E UREG_00894 hypothetical protein K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 C Other transcription-related factors D Transcription elongation factors E UREG_01427 transcription elongation factor S-II K03145 TFIIS; transcription elongation factor S-II E UREG_02728 Spt5p protein K15172 SUPT5H; transcription elongation factor SPT5 E UREG_00565 hypothetical protein K11292 SUPT6H; transcription elongation factor SPT6 D Transcription termination factor E UREG_03204 hypothetical protein K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 E UREG_01480 hypothetical protein K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 E UREG_02938 hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] E UREG_06760 similar to Cpsf4 protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 E UREG_06645 serine/threonine-protein phosphatase PP1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] E UREG_02332 serine/threonine-protein phosphatase PP-Z2 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] E UREG_01511 hypothetical protein K06100 SYMPK; symplekin E UREG_01699 similar to Ssu72 protein K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] E UREG_07218 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] E UREG_03133 hypothetical protein K14845 RAI1; RAT1-interacting protein E UREG_03294 hypothetical protein K15559 RTT103; regulator of Ty1 transposition protein 103 E UREG_04091 hypothetical protein K15560 NRD1; protein NRD1 E UREG_04516 hypothetical protein K10706 SETX; senataxin [EC:5.6.2.-] E UREG_00800 peptidyl-prolyl cis-trans isomerase ssp-1 K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] D PAF1 complex E UREG_01589 hypothetical protein K15174 PAF1; RNA polymerase II-associated factor 1 E UREG_02257 hypothetical protein K15175 CDC73; parafibromin E UREG_04156 hypothetical protein K15176 CTR9; RNA polymerase-associated protein CTR9 E UREG_05753 hypothetical protein K15177 LEO1; RNA polymerase-associated protein LEO1 E UREG_06137 hypothetical protein K15178 RTF1; RNA polymerase-associated protein RTF1 D NELF complex D Super elongation complex (SEC) E UREG_00598 hypothetical protein K15183 ELL; RNA polymerase II elongation factor ELL D Little elongation complex (LEC) E UREG_00598 hypothetical protein K15183 ELL; RNA polymerase II elongation factor ELL D Brd4/P-TEFb complex D BUR kinase complex E UREG_04044 serine/threonine-protein kinase bur-1 K15562 BUR1; serine/threonine-protein kinase BUR1 [EC:2.7.11.22 2.7.11.23] E UREG_07340 hypothetical protein K15563 BUR2; protein BUR2 D CTDK-I complex E UREG_03907 similar to cyclin-dependent kinase K00916 CTK1; CTD kinase subunit alpha [EC:2.7.11.22 2.7.11.23] E UREG_03258 hypothetical protein K15564 CTK2; CTD kinase subunit beta E UREG_06321 hypothetical protein K15565 CTK3; CTD kinase subunit gamma D 7SK RNP complex D DBIRD complex D Others E UREG_02067 similar to BTAF1 RNA polymerase II K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] E UREG_02536 similar to repressor protein K21751 DR1; down-regulator of transcription 1 E UREG_06226 hypothetical protein K21752 DRAP1; Dr1-associated corepressor E UREG_07447 hypothetical protein K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16] E UREG_06634 similar to development protein K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] E UREG_03388 transcription factor iws-1 K17498 SPN1; transcription factor SPN1 E UREG_00547 hypothetical protein K20826 RPAP1; RNA polymerase II-associated protein 1 E UREG_01606 hypothetical protein K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] E UREG_03146 transcriptional repressor rco-1 K06666 TUP1; general transcriptional corepressor TUP1 E UREG_06294 RCM-1 protein K06665 SSN6; general transcriptional corepressor CYC8 E UREG_04511 MCMA protein K12412 MCM1; pheromone receptor transcription factor E UREG_04625 hypothetical protein K24104 GPN; GPN-loop GTPase E UREG_05330 XPA-binding protein 1 K24104 GPN; GPN-loop GTPase B RNA polymerase III system C RNA polymerase III D Core subunits E UREG_06114 DNA-directed RNA polymerase III largest subunit K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] E UREG_04098 DNA-directed RNA polymerase III 130 kDa polypeptide K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] E UREG_01833 DNA-directed RNA polymerases I and III 40 kDa polypeptide K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 E UREG_03060 hypothetical protein K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 D Pol III specific subunits E UREG_04087 hypothetical protein K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 E UREG_04795 hypothetical protein K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 E UREG_01691 hypothetical protein K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 E UREG_01505 hypothetical protein K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 E UREG_07556 DNA-directed RNA polymerases III 12.5 kDa polypeptide K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 D Pol I, II, III common subunits E UREG_07175 DNA-directed RNA polymerases II 24 kDa polypeptide K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 E UREG_00664 hypothetical protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 C Basal transcription factors D TFIIIA E UREG_06671 hypothetical protein K09191 GTF3A; general transcription factor IIIA D TFIIIB E UREG_07344 TATA-box binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein E UREG_07256 hypothetical protein K15196 BRF1; transcription factor IIIB 90 kDa subunit E UREG_03079 hypothetical protein K15198 BDP1; transcription factor TFIIIB component B'' D TFIIIC E UREG_06653 hypothetical protein K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) E UREG_03955 hypothetical protein K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) D TFIIIC, fungi type E UREG_03955 hypothetical protein K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) E UREG_06653 hypothetical protein K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) E UREG_07369 hypothetical protein K15205 TFC6; transcription factor C subunit 6 E UREG_02846 hypothetical protein K15206 TFC7; transcription factor C subunit 7 C Other transcription-related factors D snRNA-activating protein complex (SNAPc) D Octamer transcription factors D Others B RNA polymerase I system C RNA polymerase I D Core subunits E UREG_01066 DNA-directed RNA polymerase I polypeptide 2 K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] E UREG_01833 DNA-directed RNA polymerases I and III 40 kDa polypeptide K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 E UREG_03060 hypothetical protein K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 D Pol I specific subunits E UREG_04320 hypothetical protein K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 E UREG_02123 hypothetical protein K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43 D Pol I, II, III common subunits E UREG_07175 DNA-directed RNA polymerases II 24 kDa polypeptide K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 E UREG_00664 hypothetical protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 C Basal transcription factors D SL1/TIF-1B E UREG_07344 TATA-box binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein C Other transcription-related factors D UBF D Transcription initiation factors E UREG_06777 hypothetical protein K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 E UREG_06365 hypothetical protein K15217 RRN5; RNA polymerase I-specific transcription initiation factor RRN5 E UREG_05713 hypothetical protein K15218 RRN6; RNA polymerase I-specific transcription initiation factor RRN6 E UREG_06552 hypothetical protein K15219 RRN7; RNA polymerase I-specific transcription initiation factor RRN7 E UREG_02687 hypothetical protein K15222 RRN11; RNA polymerase I-specific transcription initiation factor RRN11 E UREG_06047 hypothetical protein K15223 UAF30; upstream activation factor subunit UAF30 D Transcription elongation factors E UREG_02728 Spt5p protein K15172 SUPT5H; transcription elongation factor SPT5 D NoRC (nucleolar remodeling complex) E UREG_00559 chromatin remodelling complex ATPase chain ISW1 K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] D CTDK-I complex E UREG_03907 similar to cyclin-dependent kinase K00916 CTK1; CTD kinase subunit alpha [EC:2.7.11.22 2.7.11.23] E UREG_03258 hypothetical protein K15564 CTK2; CTD kinase subunit beta E UREG_06321 hypothetical protein K15565 CTK3; CTD kinase subunit gamma D Transcription termination factors D Others # AProkaryotic type B Bacterial type C RNA polymerase D Core subunits D Sigma factors C Other transcription-related factors D RNA polymerase-associated proteins D Transcription elongation factors D Transcription termination factor B Archaeal type C RNA polymerase D Core subunits C Basal transcription factors D TFB E UREG_07398 transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D TFE E UREG_00808 hypothetical protein K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha D TFS ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024