+F Repair protein KO
#
DNA Repair and Recombination Proteins - Ureaplasma parvum serovar 3 ATCC 700970
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
C BER (base exicision repair)
D DNA glycosylases
E UU548 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
C BER (base exicision repair)
D DNA glycosylases
E UU548 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E UU413 fpg; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D AP endonucleases
E UU306 nfo; endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RecJ
D DNA ligase
E UU121 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E UU102 uvrA; excinuclease ABC sununit A K03701 uvrA; excinuclease ABC subunit A
E UU120 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E UU381 uvrC; excinuclease ABC subunit c K03703 uvrC; excinuclease ABC subunit C
E UU501 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E UU121 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F UU187 rpoB; DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F UU188 rpoC; DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F UU257 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F UU597 rpoE; DNA-directed RNA polymerase delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
E UU415 dnaE; DNA polymerase III alpha chain 2 K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E UU377 polC; DNA polymerase III alpha chain 1 K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
E UU079 dnaN; DNA pol III beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E UU328 unique hypothetical K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E UU019 dnaH; DNA polymerase III delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E UU087 dnaX; DNA polymerase III gamma-tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E UU121 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E UU501 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E UU553 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E UU084 recA; recombination protein K03553 recA; recombination protein RecA
E UU449 ruvA; holliday-junction binding protein K03550 ruvA; holliday junction DNA helicase RuvA
E UU448 ruvB-2; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E UU335 unique hypothetical K03546 sbcC; DNA repair protein SbcC/Rad50
E UU475 unique hypothetical K03546 sbcC; DNA repair protein SbcC/Rad50
D RecFOR pathway proteins
E UU084 recA; recombination protein K03553 recA; recombination protein RecA
E UU038 conserved hypothetical K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E UU492 conserved hypothetical K03584 recO; DNA repair protein RecO (recombination protein O)
E UU089 recR; recombinational DNA repair protein K06187 recR; recombination protein RecR
E UU297 conserved hypothetical K03700 recU; recombination protein U
E UU449 ruvA; holliday-junction binding protein K03550 ruvA; holliday junction DNA helicase RuvA
E UU448 ruvB-2; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
E UU335 unique hypothetical K03546 sbcC; DNA repair protein SbcC/Rad50
E UU475 unique hypothetical K03546 sbcC; DNA repair protein SbcC/Rad50
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F UU082 gyrA; DNA topoisomerase chain A - DNA gyrase A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F UU081 gyrB; DNA topoisomerase - DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F UU590 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F UU282 hupA; DNA-binding protein Hu-alpha (HU-2) K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F UU492 conserved hypothetical K03584 recO; DNA repair protein RecO (recombination protein O)
F UU089 recR; recombinational DNA repair protein K06187 recR; recombination protein RecR
F UU121 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F UU102 uvrA; excinuclease ABC sununit A K03701 uvrA; excinuclease ABC subunit A
F UU120 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D UU437 conserved hypothetical K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D UU084 recA; recombination protein K03553 recA; recombination protein RecA
D UU553 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
C Others
D UU417 conserved hypothetical K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024