+F Repair protein KO #

  DNA Repair and Recombination Proteins - Ureaplasma parvum serovar 3 ATCC 700970

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E UU548 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E UU548 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E UU413 fpg; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D AP endonucleases E UU306 nfo; endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ D DNA ligase E UU121 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E UU102 uvrA; excinuclease ABC sununit A K03701 uvrA; excinuclease ABC subunit A E UU120 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E UU381 uvrC; excinuclease ABC subunit c K03703 uvrC; excinuclease ABC subunit C E UU501 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E UU121 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F UU187 rpoB; DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F UU188 rpoC; DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F UU257 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F UU597 rpoE; DNA-directed RNA polymerase delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E UU415 dnaE; DNA polymerase III alpha chain 2 K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E UU377 polC; DNA polymerase III alpha chain 1 K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E UU079 dnaN; DNA pol III beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E UU328 unique hypothetical K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E UU019 dnaH; DNA polymerase III delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E UU087 dnaX; DNA polymerase III gamma-tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E UU121 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E UU501 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E UU553 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E UU084 recA; recombination protein K03553 recA; recombination protein RecA E UU449 ruvA; holliday-junction binding protein K03550 ruvA; holliday junction DNA helicase RuvA E UU448 ruvB-2; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E UU335 unique hypothetical K03546 sbcC; DNA repair protein SbcC/Rad50 E UU475 unique hypothetical K03546 sbcC; DNA repair protein SbcC/Rad50 D RecFOR pathway proteins E UU084 recA; recombination protein K03553 recA; recombination protein RecA E UU038 conserved hypothetical K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E UU492 conserved hypothetical K03584 recO; DNA repair protein RecO (recombination protein O) E UU089 recR; recombinational DNA repair protein K06187 recR; recombination protein RecR E UU297 conserved hypothetical K03700 recU; recombination protein U E UU449 ruvA; holliday-junction binding protein K03550 ruvA; holliday junction DNA helicase RuvA E UU448 ruvB-2; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E UU335 unique hypothetical K03546 sbcC; DNA repair protein SbcC/Rad50 E UU475 unique hypothetical K03546 sbcC; DNA repair protein SbcC/Rad50 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F UU082 gyrA; DNA topoisomerase chain A - DNA gyrase A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F UU081 gyrB; DNA topoisomerase - DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F UU590 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F UU282 hupA; DNA-binding protein Hu-alpha (HU-2) K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F UU492 conserved hypothetical K03584 recO; DNA repair protein RecO (recombination protein O) F UU089 recR; recombinational DNA repair protein K06187 recR; recombination protein RecR F UU121 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F UU102 uvrA; excinuclease ABC sununit A K03701 uvrA; excinuclease ABC subunit A F UU120 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D UU437 conserved hypothetical K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D UU084 recA; recombination protein K03553 recA; recombination protein RecA D UU553 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools C Others D UU417 conserved hypothetical K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024