+D GENES KO
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KEGG Orthology (KO) - Xenorhabdus doucetiae
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:xdo00010]
D XDD1_3223 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D XDD1_3262 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D XDD1_0182 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D XDD1_0450 fbp; Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D XDD1_2462 fbaB; Fructose-bisphosphate aldolase class 1 K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D XDD1_0990 fba; Fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D XDD1_0184 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D XDD1_2254 gapA; Glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D XDD1_0989 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D XDD1_0999 putative Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D XDD1_1360 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D XDD1_0785 gpmB; putative phosphoglycerate mutase gpmB K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D XDD1_3129 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D XDD1_2074 pykA; Pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D XDD1_1850 pykF; Pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D XDD1_1843 ppsA; Phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D XDD1_2996 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D XDD1_2995 aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D XDD1_2994 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D XDD1_2291 frmA; S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D XDD1_2236 adhE; Aldehyde-alcohol dehydrogenase [Includes: Alcohol dehydrogenase; Acetaldehyde dehydrogenase [acetylating]; Pyruvate-formate-lyase deactivase] K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D XDD1_1520 yiaY; putative alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D XDD1_3133 aldA; putative aldehyde dehydrogenase AldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D XDD1_0061 acs; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D XDD1_3816 yihX; Phosphatase yihX K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10]
D XDD1_1323 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D XDD1_2255 yeaD; putative glucose-6-phosphate 1-epimerase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D XDD1_0081 pckA; Phosphoenolpyruvate carboxykinase [ATP] K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D XDD1_0804 bglC; Aryl-phospho-beta-D-glucosidase bglC K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D XDD1_2707 crr; Glucose-specific phosphotransferase enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
C 00020 Citrate cycle (TCA cycle) [PATH:xdo00020]
D XDD1_1336 gltA; Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D XDD1_2203 acnA; Aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D XDD1_2991 acnB; Aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D XDD1_2473 icd; Isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D XDD1_1342 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D XDD1_1343 sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D XDD1_2994 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D XDD1_1345 sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D XDD1_1344 sucC; Succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D XDD1_1340 sdhA; Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D XDD1_1341 sdhB; Succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D XDD1_1338 sdhC; Succinate dehydrogenase cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D XDD1_1339 sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D XDD1_3590 frdA; Fumarate reductase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D XDD1_3591 frdB; Fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D XDD1_3592 frdC; Fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D XDD1_3593 frdD; Fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D XDD1_2180 fumC; Fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D XDD1_0455 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D XDD1_0081 pckA; Phosphoenolpyruvate carboxykinase [ATP] K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D XDD1_2996 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D XDD1_2995 aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:xdo00030]
D XDD1_3262 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D XDD1_2077 zwf; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D XDD1_1370 pgl; 6-phosphogluconolactonase K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D XDD1_1518 gnd; 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D XDD1_0067 rpe; Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D XDD1_0987 tktA; Transketolase 1 K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D XDD1_0776 tal; Transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D XDD1_2984 rpiA; Ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D XDD1_0731 deoC; Deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D XDD1_0052 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D XDD1_0733 deoB; Phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D XDD1_1323 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D XDD1_2000 prs; Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D XDD1_3268 eda; KHG/KDPG aldolase [Includes: 4-hydroxy-2-oxoglutarate aldolase; 2-dehydro-3-deoxy-phosphogluconate aldolase] K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D XDD1_0607 gntK; Thermoresistant gluconokinase K00851 idnK; gluconokinase [EC:2.7.1.12]
D XDD1_2462 fbaB; Fructose-bisphosphate aldolase class 1 K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D XDD1_0990 fba; Fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D XDD1_0450 fbp; Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D XDD1_0182 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:xdo00040]
D XDD1_2240 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D XDD1_2241 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D XDD1_0067 rpe; Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D XDD1_3627 putative L-iditol 2-dehydrogenase K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D XDD1_2696 fucA; L-fuculose phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:xdo00051]
D XDD1_0813 mak; Fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D XDD1_2181 manA; Mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D XDD1_0166 rfbB; Phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D XDD1_0167 manC; Mannose-1-phosphate guanylyltransferase 2 K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D XDD1_2696 fucA; L-fuculose phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D XDD1_0182 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D XDD1_0450 fbp; Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D XDD1_2526 fruK; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D XDD1_3627 putative L-iditol 2-dehydrogenase K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D XDD1_2462 fbaB; Fructose-bisphosphate aldolase class 1 K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D XDD1_0990 fba; Fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D XDD1_0184 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D XDD1_1731 manX; PTS system mannose-specific EIIAB component [Includes: Mannose-specific phosphotransferase enzyme IIA component; Mannose-specific phosphotransferase enzyme IIB component] K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D XDD1_1730 manY; Mannose permease IIC component K02795 manY; mannose PTS system EIIC component
D XDD1_1729 manZ; Mannose permease IID component K02796 manZ; mannose PTS system EIID component
D XDD1_2601 yfbT; Phosphatase yfbT K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50]
D XDD1_3622 conserved protein of unknown function K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68]
C 00052 Galactose metabolism [PATH:xdo00052]
D XDD1_3147 galK; Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D XDD1_3146 galT; Galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D XDD1_3145 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D XDD1_2241 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D XDD1_1323 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D XDD1_3223 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D XDD1_0182 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D XDD1_1930 dgoD; D-galactonate dehydratase K01684 dgoD; galactonate dehydratase [EC:4.2.1.6]
D XDD1_1928 dgoK; 2-dehydro-3-deoxygalactonokinase K00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58]
D XDD1_1929 dgoA; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase K01631 dgoA; 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21]
C 00053 Ascorbate and aldarate metabolism [PATH:xdo00053]
D XDD1_2240 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D XDD1_2239 Uncharacterized 37.6 kDa protein in cld 5'region K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D XDD1_3133 aldA; putative aldehyde dehydrogenase AldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00500 Starch and sucrose metabolism [PATH:xdo00500]
D XDD1_2241 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D XDD1_0805 conserved protein of unknown function K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D XDD1_0807 PTS system protein K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D XDD1_0806 celB; PTS system, IIC component K02761 celB; cellobiose PTS system EIIC component
D XDD1_0804 bglC; Aryl-phospho-beta-D-glucosidase bglC K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D XDD1_3631 malP; Maltodextrin phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D XDD1_1325 pulA; Pullulanase K01200 pulA; pullulanase [EC:3.2.1.41]
D XDD1_3632 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D XDD1_2707 crr; Glucose-specific phosphotransferase enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D XDD1_0105 treB; PTS system trehalose-specific EIIBC component [Includes: Trehalose-specific phosphotransferase enzyme IIB component; Trehalose permease IIC component] K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D XDD1_0104 treC; Trehalose-6-phosphate hydrolase K01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93]
D XDD1_1323 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D XDD1_3223 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D XDD1_3262 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D XDD1_0813 mak; Fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:xdo00520]
D XDD1_2492 nagZ; Beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D XDD1_1301 Chitobiase precursor (N-acetyl-beta-glucosaminidase) (Beta-N-acetylhexosaminidase) K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D XDD1_2707 crr; Glucose-specific phosphotransferase enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D XDD1_1299 PTS system N-acetylglucosamine-specific EIICBA component [Includes: N-acetylglucosamine permease IIC component; N-acetylglucosamine-specific phosphotransferase enzyme IIB component; N-acetylglucosamine-specific phosphotransferase enzyme IIA component] (fragment) K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D XDD1_1297 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D XDD1_1298 nagB; Glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D XDD1_0813 mak; Fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D XDD1_0030 glmS; Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D XDD1_0474 glmM; Phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D XDD1_0031 glmU; Bifunctional protein glmU [Includes: UDP-N-acetylglucosamine pyrophosphorylase; Glucosamine-1-phosphate N-acetyltransferase] K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D XDD1_3663 murP; PTS system N-acetylmuramic acid-specific EIIBC component [Includes: N-acetylmuramic acid-specific phosphotransferase enzyme IIB component; N-acetylmuramic acid permease IIC component] K11192 murP; N-acetylmuramic acid PTS system EIICB component [EC:2.7.1.192]
D XDD1_3662 murQ; N-acetylmuramic acid 6-phosphate etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D XDD1_1865 anmK; Anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D XDD1_3515 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D XDD1_0272 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D XDD1_0162 qnlB; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D XDD1_0348 wecB; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D XDD1_0349 wecC; UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D XDD1_0164 capD; UDP-glucose 4-epimerase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D XDD1_1781 pbgP; putative formyltransferase K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305]
D XDD1_1779 pgbP; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D XDD1_1780 pbgP; putative sugar transferase with nucleotide-diphospho-sugar transferase domain K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D XDD1_1782 pbgP; PbgP4 protein K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D XDD1_3223 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D XDD1_1323 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D XDD1_2241 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D XDD1_2240 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D XDD1_3147 galK; Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D XDD1_3146 galT; Galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D XDD1_3145 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D XDD1_2239 Uncharacterized 37.6 kDa protein in cld 5'region K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D XDD1_1731 manX; PTS system mannose-specific EIIAB component [Includes: Mannose-specific phosphotransferase enzyme IIA component; Mannose-specific phosphotransferase enzyme IIB component] K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D XDD1_1730 manY; Mannose permease IIC component K02795 manY; mannose PTS system EIIC component
D XDD1_1729 manZ; Mannose permease IID component K02796 manZ; mannose PTS system EIID component
D XDD1_3262 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D XDD1_2181 manA; Mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D XDD1_0166 rfbB; Phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D XDD1_0167 manC; Mannose-1-phosphate guanylyltransferase 2 K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
C 00620 Pyruvate metabolism [PATH:xdo00620]
D XDD1_0061 acs; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D XDD1_2996 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D XDD1_2995 aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D XDD1_2994 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D XDD1_1566 pflB; Formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D XDD1_2236 adhE; Aldehyde-alcohol dehydrogenase [Includes: Alcohol dehydrogenase; Acetaldehyde dehydrogenase [acetylating]; Pyruvate-formate-lyase deactivase] K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D XDD1_1520 yiaY; putative alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D XDD1_2291 frmA; S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D XDD1_2603 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D XDD1_2604 pta; Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D XDD1_2074 pykA; Pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D XDD1_1850 pykF; Pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D XDD1_3290 accA; Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D XDD1_3557 accB; Biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D XDD1_3558 accC; Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D XDD1_2653 accD; Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D XDD1_3596 bccA; Acetyl-/propionyl-coenzyme A carboxylase alpha chain [Includes: Biotin carboxylase; Biotin carboxyl carrier protein] K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D XDD1_1638 acyP; Acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D XDD1_3133 aldA; putative aldehyde dehydrogenase AldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D XDD1_1709 lldD; L-lactate dehydrogenase [cytochrome] K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D XDD1_2096 ldhA; D-lactate dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D XDD1_2515 dld; D-lactate dehydrogenase K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12]
D XDD1_1861 gloA; Lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D XDD1_0980 gloB; Hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D XDD1_1589 ycbL; putative enzyme K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D XDD1_2018 ghrA; Glyoxylate/hydroxypyruvate reductase A K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D XDD1_1441 sfcA; NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D XDD1_2405 maeB; putative bifunctional: malic oxidoreductase (N-terminal); phosphotransacetylase (C-terminal) K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D XDD1_0455 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D XDD1_2180 fumC; Fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D XDD1_3590 frdA; Fumarate reductase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D XDD1_3591 frdB; Fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D XDD1_3592 frdC; Fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D XDD1_3593 frdD; Fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D XDD1_0204 ppc; Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D XDD1_0081 pckA; Phosphoenolpyruvate carboxykinase [ATP] K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D XDD1_1843 ppsA; Phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D XDD1_3271 aceB; Malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D XDD1_3033 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:xdo00630]
D XDD1_3270 aceA; Isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1]
D XDD1_0061 acs; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D XDD1_3271 aceB; Malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D XDD1_0455 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D XDD1_1336 gltA; Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D XDD1_2203 acnA; Aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D XDD1_2991 acnB; Aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D XDD1_3596 bccA; Acetyl-/propionyl-coenzyme A carboxylase alpha chain [Includes: Biotin carboxylase; Biotin carboxyl carrier protein] K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D XDD1_2018 ghrA; Glyoxylate/hydroxypyruvate reductase A K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D XDD1_0066 Phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D XDD1_3833 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D XDD1_2792 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D XDD1_2972 gcvP; Glycine dehydrogenase [decarboxylating] K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D XDD1_2974 gcvT; Aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D XDD1_2994 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D XDD1_2973 gcvH; Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D XDD1_3574 glxK; Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D XDD1_3268 eda; KHG/KDPG aldolase [Includes: 4-hydroxy-2-oxoglutarate aldolase; 2-dehydro-3-deoxy-phosphogluconate aldolase] K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D XDD1_3961 Formate dehydrogenase major subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D XDD1_3962 exported protein of unknown function K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D XDD1_3960 fdoH; Formate dehydrogenase-O iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D XDD1_3958 fdoI; Formate dehydrogenase, cytochrome b556(fdo) subunit K00127 fdoI; formate dehydrogenase subunit gamma
D XDD1_2243 purU; Formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:xdo00640]
D XDD1_0061 acs; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D XDD1_2885 prpE; Propionate--CoA ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D XDD1_2603 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D XDD1_2604 pta; Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D XDD1_2994 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D XDD1_1566 pflB; Formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D XDD1_3555 yhdH; putative quinone oxidoreductase yhdH K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D XDD1_3923 paaF; protein PaaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D XDD1_3188 fadB; Fatty acid oxidation complex subunit alpha [Includes: Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase] K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D XDD1_2622 fadJ; Fatty acid oxidation complex subunit alpha [Includes: Enoyl-CoA hydratase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase] K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D XDD1_3290 accA; Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D XDD1_3557 accB; Biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D XDD1_3558 accC; Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D XDD1_2653 accD; Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D XDD1_3596 bccA; Acetyl-/propionyl-coenzyme A carboxylase alpha chain [Includes: Biotin carboxylase; Biotin carboxyl carrier protein] K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D XDD1_1924 puuE; 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D XDD1_2154 Omega-amino acid--pyruvate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D XDD1_1344 sucC; Succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D XDD1_1345 sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D XDD1_1035 iolA; Methylmalonate semialdehyde dehydrogenase [acylating] 2 K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D XDD1_2883 prpC; 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D XDD1_2884 prpD; 2-methylcitrate dehydratase K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79]
D XDD1_2991 acnB; Aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D XDD1_2882 prpB; Methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30]
D XDD1_3585 dhaD; Glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
C 00650 Butanoate metabolism [PATH:xdo00650]
D XDD1_1792 xcnB; 3-hydroxyacyl-CoA dehydrogenase involved in xenocoumacin synthesis K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D XDD1_2708 hbd; putative 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D XDD1_3925 paaH; protein PaaH; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D XDD1_3188 fadB; Fatty acid oxidation complex subunit alpha [Includes: Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase] K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D XDD1_2622 fadJ; Fatty acid oxidation complex subunit alpha [Includes: Enoyl-CoA hydratase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase] K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D XDD1_3923 paaF; protein PaaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D XDD1_2236 adhE; Aldehyde-alcohol dehydrogenase [Includes: Alcohol dehydrogenase; Acetaldehyde dehydrogenase [acetylating]; Pyruvate-formate-lyase deactivase] K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D XDD1_0586 Maleate cis-trans isomerase K01799 nicE; maleate isomerase [EC:5.2.1.1]
D XDD1_1340 sdhA; Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D XDD1_1341 sdhB; Succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D XDD1_1338 sdhC; Succinate dehydrogenase cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D XDD1_1339 sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D XDD1_3590 frdA; Fumarate reductase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D XDD1_3591 frdB; Fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D XDD1_3592 frdC; Fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D XDD1_3593 frdD; Fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D XDD1_2284 Pyridoxal-dependent decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D XDD1_2289 Pyridoxal-dependent decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D XDD1_1924 puuE; 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D XDD1_1021 gabD; Succinate-semialdehyde dehydrogenase, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D XDD1_1566 pflB; Formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D XDD1_1029 putative alcohol dehydrogenase K18369 adh2; alcohol dehydrogenase [EC:1.1.1.-]
D XDD1_0329 ilvG; Acetolactate synthase isozyme 2 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D XDD1_3030 ilvI; Acetolactate synthase isozyme 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D XDD1_3029 ilvH; Acetolactate synthase isozyme 3 small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D XDD1_0330 ilvM; Acetolactate synthase isozyme 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D XDD1_3345 butA; Diacetyl reductase [(S)-acetoin forming] K03366 butA; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304]
D XDD1_2324 Oxidoreductase K18009 budC; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304]
C 00660 C5-Branched dibasic acid metabolism [PATH:xdo00660]
D XDD1_0329 ilvG; Acetolactate synthase isozyme 2 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D XDD1_3030 ilvI; Acetolactate synthase isozyme 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D XDD1_3029 ilvH; Acetolactate synthase isozyme 3 small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D XDD1_0330 ilvM; Acetolactate synthase isozyme 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D XDD1_1344 sucC; Succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D XDD1_1345 sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D XDD1_1145 IIL; 3-isopropylmalate dehydratase K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D XDD1_1146 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D XDD1_3034 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:xdo00562]
D XDD1_3773 plcN; Non-hemolytic phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
D XDD1_2790 suhB; Inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D XDD1_1039 idhA; Inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D XDD1_1042 mocC; Rhizopine catabolism protein mocC K03335 iolE; inosose dehydratase [EC:4.2.1.44]
D XDD1_1036 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22]
D XDD1_1043 iolB; 5-deoxy-glucuronate isomerase K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30]
D XDD1_1041 putative Fructokinase K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92]
D XDD1_1035 iolA; Methylmalonate semialdehyde dehydrogenase [acylating] 2 K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D XDD1_0184 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:xdo00190]
D XDD1_2595 nuoA; NADH-quinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D XDD1_2594 nuoB; NADH-quinone oxidoreductase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D XDD1_2593 nuoC; NADH-quinone oxidoreductase subunit C/D K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2]
D XDD1_2592 nuoE; NADH-quinone oxidoreductase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D XDD1_2591 nuoF; NADH-quinone oxidoreductase subunit F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D XDD1_2590 nuoG; NADH-quinone oxidoreductase subunit G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D XDD1_2589 nuoH; NADH-quinone oxidoreductase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D XDD1_2588 nuoI; NADH-quinone oxidoreductase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D XDD1_2587 nuoJ; NADH-quinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D XDD1_2586 nuoK; NADH-quinone oxidoreductase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D XDD1_2585 nuoL; NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D XDD1_2584 nuoM; NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D XDD1_2583 nuoN; NADH-quinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D XDD1_2491 ndh; NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D XDD1_1340 sdhA; Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D XDD1_1341 sdhB; Succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D XDD1_1338 sdhC; Succinate dehydrogenase cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D XDD1_1339 sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D XDD1_3590 frdA; Fumarate reductase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D XDD1_3591 frdB; Fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D XDD1_3592 frdC; Fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D XDD1_3593 frdD; Fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D XDD1_0864 cyoE; Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D XDD1_0865 cyoD; Cytochrome o ubiquinol oxidase protein CyoD K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV
D XDD1_0866 cyoC; Cytochrome o ubiquinol oxidase subunit 3 K02299 cyoC; cytochrome o ubiquinol oxidase subunit III
D XDD1_0867 cyoB; Ubiquinol oxidase subunit 1 K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3]
D XDD1_0868 cyoA; Ubiquinol oxidase subunit 2 K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3]
D XDD1_1346 cydA; Cytochrome d ubiquinol oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D XDD1_1976 cioA; Ubiquinol oxidase subunit I, cyanide insensitive K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D XDD1_1347 cydB; Cytochrome d ubiquinol oxidase subunit 2 K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D XDD1_1975 cioB; Ubiquinol oxidase subunit II, cyanide insensitive K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D XDD1_1348 ybgT; conserved exported protein of unknown function K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D XDD1_0036 atpA; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D XDD1_0034 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D XDD1_0035 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D XDD1_0037 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D XDD1_0033 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D XDD1_0040 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D XDD1_0038 atpF; ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D XDD1_0039 atpE; ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D XDD1_0449 ppa; Inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D XDD1_2431 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:xdo00680]
D XDD1_2291 frmA; S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D XDD1_3961 Formate dehydrogenase major subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D XDD1_3962 exported protein of unknown function K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D XDD1_3960 fdoH; Formate dehydrogenase-O iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D XDD1_3958 fdoI; Formate dehydrogenase, cytochrome b556(fdo) subunit K00127 fdoI; formate dehydrogenase subunit gamma
D XDD1_2792 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D XDD1_3129 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D XDD1_0204 ppc; Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D XDD1_0455 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D XDD1_2462 fbaB; Fructose-bisphosphate aldolase class 1 K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D XDD1_0990 fba; Fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D XDD1_0450 fbp; Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D XDD1_0182 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D XDD1_2603 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D XDD1_2604 pta; Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D XDD1_0061 acs; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D XDD1_1843 ppsA; Phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D XDD1_1360 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D XDD1_0785 gpmB; putative phosphoglycerate mutase gpmB K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D XDD1_1005 putative Phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D XDD1_3540 gyaR; GyaR K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D XDD1_2982 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D XDD1_1570 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D XDD1_0793 serB; 3-phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:xdo00910]
D XDD1_0585 Nitrilase family protein K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D XDD1_0096 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D XDD1_3833 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D XDD1_3504 gltB; Glutamate synthase [NADPH] large chain K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D XDD1_3505 gltD; Glutamate synthase [NADPH] small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D XDD1_3099 can; Carbonic anhydrase 2 K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:xdo00920]
D XDD1_0183 sbp; Sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D XDD1_2735 cysU; Sulfate transport system permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D XDD1_2734 cysW; Sulfate transport system permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D XDD1_2733 cysA; Sulfate/thiosulfate import ATP-binding protein CysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D XDD1_3168 cysN; Sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D XDD1_3169 cysD; Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D XDD1_3167 cysC; Adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D XDD1_0439 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D XDD1_3171 cysH; Phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D XDD1_3173 cysJ; sulfite reductase, alpha subunit (flavoprotein) K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D XDD1_3172 cysI; Sulfite reductase [NADPH] hemoprotein beta-component K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D XDD1_1420 sseA; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D XDD1_3893 glpE; Thiosulfate sulfurtransferase glpE K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1]
D XDD1_0158 cysE; Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D XDD1_0885 putative Cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D XDD1_2704 cysK; Cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D XDD1_3272 metA; Homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D XDD1_0202 metB; Cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D XDD1_2290 conserved protein of unknown function K17228 sfnG; dimethylsulfone monooxygenase [EC:1.14.14.35]
D XDD1_2933 putative AMP-dependent synthetase/ligase K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:xdo00061]
D XDD1_3290 accA; Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D XDD1_3557 accB; Biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D XDD1_3558 accC; Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D XDD1_2653 accD; Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D XDD1_3596 bccA; Acetyl-/propionyl-coenzyme A carboxylase alpha chain [Includes: Biotin carboxylase; Biotin carboxyl carrier protein] K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D XDD1_3462 acyl carrier protein K02078 acpP; acyl carrier protein
D XDD1_3463 acpP; Acyl carrier protein 2 K02078 acpP; acyl carrier protein
D XDD1_2502 acpP; Acyl carrier protein K02078 acpP; acyl carrier protein
D XDD1_2681 conserved protein of unknown function K02078 acpP; acyl carrier protein
D XDD1_2504 fabD; Malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D XDD1_2717 (Acyl-carrier-protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D XDD1_0688 putative 3-oxoacyl-[acyl-carrier-protein] synthase III (Beta-ketoacyl-ACP synthase III) (KAS III) K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D XDD1_2680 3-oxoacyl-[acyl-carrier-protein] synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D XDD1_2505 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D XDD1_3472 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D XDD1_2640 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase 1 K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D XDD1_3475 Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D XDD1_2501 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D XDD1_2932 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XDD1_3344 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XDD1_3474 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XDD1_2683 Short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XDD1_2503 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XDD1_1604 fabA; 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D XDD1_3295 fabZ; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D XDD1_1869 fabI; Enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D XDD1_3031 putative long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D XDD1_2084 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:xdo00071]
D XDD1_3189 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D XDD1_2621 fadI; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D XDD1_3188 fadB; Fatty acid oxidation complex subunit alpha [Includes: Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase] K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D XDD1_2622 fadJ; Fatty acid oxidation complex subunit alpha [Includes: Enoyl-CoA hydratase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase] K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D XDD1_3923 paaF; protein PaaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D XDD1_1166 fadE; Acyl-coenzyme A dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D XDD1_3031 putative long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D XDD1_2084 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D XDD1_1195 aas; Bifunctional protein aas [Includes: 2-acylglycerophosphoethanolamine acyltransferase; Acyl-[acyl-carrier-protein] synthetase] K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D XDD1_2291 frmA; S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D XDD1_2236 adhE; Aldehyde-alcohol dehydrogenase [Includes: Alcohol dehydrogenase; Acetaldehyde dehydrogenase [acetylating]; Pyruvate-formate-lyase deactivase] K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D XDD1_1520 yiaY; putative alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D XDD1_3133 aldA; putative aldehyde dehydrogenase AldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:xdo00561]
D XDD1_3574 glxK; Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D XDD1_3133 aldA; putative aldehyde dehydrogenase AldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D XDD1_3585 dhaD; Glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
D XDD1_0190 glpK; Glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D XDD1_3259 plsB; Glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D XDD1_2506 plsX; Phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D XDD1_3413 plsY; Glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D XDD1_3394 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D XDD1_3258 dgkA; Diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D XDD1_3902 protein of unknown function K01046 lip; triacylglycerol lipase [EC:3.1.1.3]
C 00564 Glycerophospholipid metabolism [PATH:xdo00564]
D XDD1_0157 gpsA; Glycerol-3-phosphate dehydrogenase [NAD(P)+] K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D XDD1_3896 glpD; Aerobic glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D XDD1_3259 plsB; Glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D XDD1_3413 plsY; Glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D XDD1_3394 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D XDD1_3258 dgkA; Diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D XDD1_3773 plcN; Non-hemolytic phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
D XDD1_0380 pldA; Phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D XDD1_0382 pldB; Lysophospholipase L2 K01048 pldB; lysophospholipase [EC:3.1.1.5]
D XDD1_3588 glpQ; Glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D XDD1_1195 aas; Bifunctional protein aas [Includes: 2-acylglycerophosphoethanolamine acyltransferase; Acyl-[acyl-carrier-protein] synthetase] K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D XDD1_3300 cdsA; Phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D XDD1_1231 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D XDD1_0398 psd; Phosphatidylserine decarboxylase proenzyme K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D XDD1_2167 conserved protein of unknown function K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D XDD1_1676 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D XDD1_0842 pgpA; Phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D XDD1_2228 cls; Cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism [PATH:xdo00565]
D XDD1_0380 pldA; Phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D XDD1_3773 plcN; Non-hemolytic phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
C 00600 Sphingolipid metabolism [PATH:xdo00600]
D XDD1_1301 Chitobiase precursor (N-acetyl-beta-glucosaminidase) (Beta-N-acetylhexosaminidase) K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
D XDD1_0380 pldA; Phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00591 Linoleic acid metabolism
D XDD1_0380 pldA; Phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00592 alpha-Linolenic acid metabolism [PATH:xdo00592]
D XDD1_0380 pldA; Phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D XDD1_3189 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D XDD1_2621 fadI; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:xdo01040]
D XDD1_0927 tesA; Acyl-CoA thioesterase I K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D XDD1_0891 tesB; Acyl-CoA thioesterase 2 K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D XDD1_2225 yciA; Acyl-CoA thioester hydrolase yciA K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:xdo00230]
D XDD1_3400 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D XDD1_0077 nudE; ADP compounds hydrolase nudE K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-]
D XDD1_0733 deoB; Phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D XDD1_1323 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D XDD1_2000 prs; Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D XDD1_2657 purF; Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D XDD1_3608 purD; Phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D XDD1_2429 purN; Phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D XDD1_2799 purL; Phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D XDD1_2428 purM; Phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D XDD1_0937 purK; N5-carboxyaminoimidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D XDD1_0938 purE; N5-carboxyaminoimidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D XDD1_2414 purC; Phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D XDD1_2478 purB; Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D XDD1_3607 purH; Bifunctional purine biosynthesis protein purH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase; IMP cyclohydrolase] K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D XDD1_0903 apt; Adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D XDD1_0917 ushA; Protein UshA [Includes: UDP-sugar hydrolase; 5'-nucleotidase] K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D XDD1_3161 surE; Multifunctional protein surE [Includes: 5'/3'-nucleotidase; Exopolyphosphatase] K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D XDD1_0914 gsk; Inosine-guanosine kinase K00892 gsk; inosine kinase [EC:2.7.1.73]
D XDD1_0734 deoD; Purine nucleoside phosphorylase deoD-type K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D XDD1_1222 conserved protein of unknown function K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D XDD1_0654 IUNH; Inosine-uridine preferring nucleoside hydrolase K25589 inuH; inosine/uridine nucleosidase [EC:3.2.2.2 3.2.2.3]
D XDD1_3098 hpt; Hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D XDD1_2394 guaB; Inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D XDD1_2774 ndk; Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D XDD1_0786 conserved protein of unknown function K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73]
D XDD1_1151 Nucleoside-triphosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D XDD1_1189 gpt; Xanthine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D XDD1_2393 guaA; GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D XDD1_3803 gmk; Guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D XDD1_2557 nrdA; Ribonucleoside-diphosphate reductase 1 subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D XDD1_2556 nrdB; Ribonucleoside-diphosphate reductase 1 subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D XDD1_0499 nrdD; Anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D XDD1_3123 dgt; Deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D XDD1_2599 conserved protein of unknown function K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D XDD1_3805 spoT; Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D XDD1_0341 gppA; Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D XDD1_2432 ppx; Exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D XDD1_3126 relA; GTP pyrophosphokinase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D XDD1_0365 cya; Adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1]
D XDD1_0426 purA; Adenylosuccinate synthetase 2 K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D XDD1_3899 Adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D XDD1_2183 add; Adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D XDD1_0814 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D XDD1_0910 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D XDD1_3127 mazG; Nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D XDD1_0503 conserved protein of unknown function K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D XDD1_3399 icc; Protein icc K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D XDD1_3391 apaH; Bis(5'-nucleosyl)-tetraphosphatase, symmetrical K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D XDD1_3167 cysC; Adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D XDD1_3168 cysN; Sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D XDD1_3169 cysD; Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
C 00240 Pyrimidine metabolism [PATH:xdo00240]
D XDD1_0742 carB; Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D XDD1_0743 carA; Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D XDD1_0511 pyrB; Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D XDD1_0502 pyrI; Aspartate carbamoyltransferase regulatory chain K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D XDD1_2384 pyrC; Dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D XDD1_1596 pyrD; Dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D XDD1_0116 pyrE; Orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D XDD1_2198 pyrF; Orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D XDD1_3304 pyrH; Uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D XDD1_2774 ndk; Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D XDD1_3127 mazG; Nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D XDD1_3550 conserved protein of unknown function K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D XDD1_3128 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D XDD1_1572 cmk; Cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D XDD1_1447 udk; Uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D XDD1_0917 ushA; Protein UshA [Includes: UDP-sugar hydrolase; 5'-nucleotidase] K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D XDD1_3161 surE; Multifunctional protein surE [Includes: 5'/3'-nucleotidase; Exopolyphosphatase] K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D XDD1_0654 IUNH; Inosine-uridine preferring nucleoside hydrolase K25589 inuH; inosine/uridine nucleosidase [EC:3.2.2.2 3.2.2.3]
D XDD1_3203 udp; Uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D XDD1_2427 upp; Uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D XDD1_0814 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D XDD1_2942 yeiI; Uncharacterized sugar kinase yeiI K16328 psuK; pseudouridine kinase [EC:2.7.1.83]
D XDD1_1442 cdd; Cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D XDD1_0802 conserved protein of unknown function K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D XDD1_0499 nrdD; Anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D XDD1_1448 dcd; Deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D XDD1_2557 nrdA; Ribonucleoside-diphosphate reductase 1 subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D XDD1_2556 nrdB; Ribonucleoside-diphosphate reductase 1 subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D XDD1_2599 conserved protein of unknown function K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D XDD1_2498 tmk; Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D XDD1_0119 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D XDD1_0732 deoA; Thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D XDD1_2237 tdk; deoxythymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D XDD1_3371 thyA; Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D XDD1_2170 ydfG; NADP-dependent L-serine/L-allo-threonine dehydrogenase ydfG K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:xdo00250]
D XDD1_1590 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D XDD1_0710 putative aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D XDD1_1569 ansB; L-asparaginase 2 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D XDD1_2251 ansA; L-asparaginase 1 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D XDD1_0046 asnA; asparagine synthetase A K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D XDD1_2597 yfbQ; Uncharacterized aminotransferase yfbQ K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D XDD1_0644 aspA; Aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D XDD1_0218 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D XDD1_1211 Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D XDD1_0219 argH; Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D XDD1_0426 purA; Adenylosuccinate synthetase 2 K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D XDD1_2478 purB; Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D XDD1_0511 pyrB; Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D XDD1_0502 pyrI; Aspartate carbamoyltransferase regulatory chain K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D XDD1_2284 Pyridoxal-dependent decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D XDD1_2289 Pyridoxal-dependent decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D XDD1_1924 puuE; 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D XDD1_1021 gabD; Succinate-semialdehyde dehydrogenase, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D XDD1_3504 gltB; Glutamate synthase [NADPH] large chain K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D XDD1_3505 gltD; Glutamate synthase [NADPH] small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D XDD1_0096 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D XDD1_2296 putA; Bifunctional protein putA [Includes: Proline dehydrogenase; Delta-1-pyrroline-5-carboxylate dehydrogenase] K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D XDD1_3833 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D XDD1_0742 carB; Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D XDD1_0743 carA; Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D XDD1_1138 glsA; Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D XDD1_0030 glmS; Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D XDD1_2657 purF; Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:xdo00260]
D XDD1_3263 lysC; Lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D XDD1_0780 thrA; Bifunctional aspartokinase/homoserine dehydrogenase 1 [Includes: Aspartokinase; Homoserine dehydrogenase] K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D XDD1_0203 metL; Bifunctional aspartokinase/homoserine dehydrogenase 2 [Includes: Aspartokinase; Homoserine dehydrogenase] K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D XDD1_0009 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D XDD1_0779 thrB; Homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D XDD1_0778 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D XDD1_2792 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D XDD1_2018 ghrA; Glyoxylate/hydroxypyruvate reductase A K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D XDD1_3574 glxK; Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D XDD1_1360 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D XDD1_0785 gpmB; putative phosphoglycerate mutase gpmB K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D XDD1_1005 putative Phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D XDD1_3540 gyaR; GyaR K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D XDD1_2982 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D XDD1_1570 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D XDD1_0793 serB; 3-phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D XDD1_2170 ydfG; NADP-dependent L-serine/L-allo-threonine dehydrogenase ydfG K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D XDD1_0147 kbl; 2-amino-3-ketobutyrate CoA ligase (glycine acetyltransferase) K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D XDD1_0148 tdh; L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103]
D XDD1_2972 gcvP; Glycine dehydrogenase [decarboxylating] K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D XDD1_2974 gcvT; Aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D XDD1_2994 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D XDD1_2973 gcvH; Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D XDD1_2127 Glycine amidinotransferase, mitochondrial (fragment) K00613 GATM; glycine amidinotransferase [EC:2.1.4.1]
D XDD1_1231 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D XDD1_1182 betA; Choline dehydrogenase K00108 betA; choline dehydrogenase [EC:1.1.99.1]
D XDD1_1183 betB; Betaine aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]
D XDD1_1920 Gamma-aminobutyraldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]
D XDD1_3040 Cysteine synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D XDD1_0530 Cystathionine beta-lyase (fragment) K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D XDD1_3039 metC; Cystathionine beta-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D XDD1_1732 sdaA; L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D XDD1_0333 ilvA; Threonine dehydratase biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D XDD1_3534 putative alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D XDD1_2220 trpA; Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D XDD1_2219 trpB; Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D XDD1_1960 dat; Diaminobutyrate--2-oxoglutarate aminotransferase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
D XDD1_1243 putative L-2,4-diaminobutyrate decarboxylase K13745 ddc; L-2,4-diaminobutyrate decarboxylase [EC:4.1.1.86]
C 00270 Cysteine and methionine metabolism [PATH:xdo00270]
D XDD1_0158 cysE; Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D XDD1_0885 putative Cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D XDD1_2704 cysK; Cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D XDD1_0530 Cystathionine beta-lyase (fragment) K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D XDD1_3039 metC; Cystathionine beta-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D XDD1_0798 metC; Cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D XDD1_0847 Similar to aminotransferases K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D XDD1_3040 Cysteine synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D XDD1_3214 metE; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D XDD1_3138 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D XDD1_1287 speH; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D XDD1_3071 speD; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D XDD1_3072 Spermidine synthase (fragment) K00797 speE; spermidine synthase [EC:2.5.1.16]
D XDD1_3122 mtnN; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D XDD1_2694 MTK; Methylthioribose kinase K00899 mtnK; 5-methylthioribose kinase [EC:2.7.1.100]
D XDD1_1222 conserved protein of unknown function K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D XDD1_2695 mtnA; Methylthioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D XDD1_3230 tyrB; Aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D XDD1_1746 yebR; Protein yebR K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D XDD1_0699 Cytosine-specific methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D XDD1_1203 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D XDD1_3263 lysC; Lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D XDD1_0780 thrA; Bifunctional aspartokinase/homoserine dehydrogenase 1 [Includes: Aspartokinase; Homoserine dehydrogenase] K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D XDD1_0203 metL; Bifunctional aspartokinase/homoserine dehydrogenase 2 [Includes: Aspartokinase; Homoserine dehydrogenase] K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D XDD1_0009 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D XDD1_3272 metA; Homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D XDD1_0202 metB; Cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D XDD1_0554 metY; homocysteine synthase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D XDD1_0331 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D XDD1_1202 gshA; Glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D XDD1_1158 gshB; Glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D XDD1_1590 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D XDD1_1420 sseA; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D XDD1_3534 putative alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D XDD1_0532 dcyD; D-cysteine desulfhydrase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]
D XDD1_0455 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D XDD1_1732 sdaA; L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D XDD1_2723 cysM; Cysteine synthase B K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D XDD1_1005 putative Phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D XDD1_3540 gyaR; GyaR K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D XDD1_2982 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D XDD1_1570 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:xdo00280]
D XDD1_0331 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D XDD1_2994 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D XDD1_3923 paaF; protein PaaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D XDD1_3188 fadB; Fatty acid oxidation complex subunit alpha [Includes: Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase] K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D XDD1_2622 fadJ; Fatty acid oxidation complex subunit alpha [Includes: Enoyl-CoA hydratase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase] K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D XDD1_3189 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D XDD1_2621 fadI; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D XDD1_3596 bccA; Acetyl-/propionyl-coenzyme A carboxylase alpha chain [Includes: Biotin carboxylase; Biotin carboxyl carrier protein] K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D XDD1_1035 iolA; Methylmalonate semialdehyde dehydrogenase [acylating] 2 K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D XDD1_3133 aldA; putative aldehyde dehydrogenase AldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D XDD1_2154 Omega-amino acid--pyruvate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:xdo00290]
D XDD1_0333 ilvA; Threonine dehydratase biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D XDD1_1145 IIL; 3-isopropylmalate dehydratase K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D XDD1_1146 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D XDD1_3034 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D XDD1_0329 ilvG; Acetolactate synthase isozyme 2 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D XDD1_3030 ilvI; Acetolactate synthase isozyme 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D XDD1_3029 ilvH; Acetolactate synthase isozyme 3 small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D XDD1_0330 ilvM; Acetolactate synthase isozyme 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D XDD1_0338 ilvC; ketol-acid reductoisomerase, NAD(P)-binding K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D XDD1_0332 ilvD; Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D XDD1_0331 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D XDD1_3797 avtA; Valine--pyruvate aminotransferase K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D XDD1_2597 yfbQ; Uncharacterized aminotransferase yfbQ K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D XDD1_3033 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:xdo00300]
D XDD1_3263 lysC; Lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D XDD1_0780 thrA; Bifunctional aspartokinase/homoserine dehydrogenase 1 [Includes: Aspartokinase; Homoserine dehydrogenase] K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D XDD1_0203 metL; Bifunctional aspartokinase/homoserine dehydrogenase 2 [Includes: Aspartokinase; Homoserine dehydrogenase] K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D XDD1_0009 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D XDD1_2416 dapA; Dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D XDD1_0744 dapB; Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D XDD1_3309 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D XDD1_3668 argD; Acetylornithine/succinyldiaminopimelate aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D XDD1_2410 dapE; Succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D XDD1_0368 dapF; Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D XDD1_1165 lysA; Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D XDD1_1964 Achromobactin biosynthetic and transport gene lysA K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D XDD1_3023 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D XDD1_3022 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:xdo00310]
D XDD1_1343 sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D XDD1_2994 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D XDD1_3923 paaF; protein PaaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D XDD1_3188 fadB; Fatty acid oxidation complex subunit alpha [Includes: Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase] K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D XDD1_2622 fadJ; Fatty acid oxidation complex subunit alpha [Includes: Enoyl-CoA hydratase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase] K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D XDD1_3534 putative alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D XDD1_1021 gabD; Succinate-semialdehyde dehydrogenase, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D XDD1_1986 conserved protein of unknown function K15736 lhgO; (S)-2-hydroxyglutarate dehydrogenase [EC:1.1.5.13]
D XDD1_1845 conserved protein of unknown function K26063 ydiJ; (R)-2-hydroxyglutarate dehydrogenase [EC:1.1.-.-]
D XDD1_3133 aldA; putative aldehyde dehydrogenase AldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:xdo00220]
D XDD1_0529 argI; Ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D XDD1_0218 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D XDD1_1211 Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D XDD1_0219 argH; Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D XDD1_2168 Beta-hydroxylase, bleomycin/phleomycin binding protein, ankyrin homologue, bleomycin and transport protein K27542 argZ; arginine dihydrolase [EC:3.5.3.27]
D XDD1_1138 glsA; Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D XDD1_3833 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D XDD1_0096 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D XDD1_1590 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D XDD1_2597 yfbQ; Uncharacterized aminotransferase yfbQ K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D XDD1_3359 argA; Amino-acid acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D XDD1_0217 argB; Acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D XDD1_0216 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D XDD1_3668 argD; Acetylornithine/succinyldiaminopimelate aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D XDD1_0215 argE; Acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:xdo00330]
D XDD1_2127 Glycine amidinotransferase, mitochondrial (fragment) K00613 GATM; glycine amidinotransferase [EC:2.1.4.1]
D XDD1_2275 adiA; Biodegradative arginine decarboxylase K01584 adiA; arginine decarboxylase [EC:4.1.1.19]
D XDD1_3139 speA; Biosynthetic arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D XDD1_3140 speB; Agmatinase K01480 speB; agmatinase [EC:3.5.3.11]
D XDD1_3072 Spermidine synthase (fragment) K00797 speE; spermidine synthase [EC:2.5.1.16]
D XDD1_1287 speH; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D XDD1_3071 speD; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D XDD1_3133 aldA; putative aldehyde dehydrogenase AldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D XDD1_2430 speG; Spermidine N(1)-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D XDD1_2671 astA; Arginine N-succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109]
D XDD1_2673 astB; N-succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23]
D XDD1_2670 astC; Succinylornithine transaminase K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D XDD1_2672 astD; N-succinylglutamate 5-semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71]
D XDD1_2674 astE; Succinylglutamate desuccinylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96]
D XDD1_0655 putative oxidoreductase with FAD/NAD(P)-binding domain K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D XDD1_1927 FAD dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D XDD1_2168 Beta-hydroxylase, bleomycin/phleomycin binding protein, ankyrin homologue, bleomycin and transport protein K27542 argZ; arginine dihydrolase [EC:3.5.3.27]
D XDD1_1153 proC; Pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D XDD1_2296 putA; Bifunctional protein putA [Includes: Proline dehydrogenase; Delta-1-pyrroline-5-carboxylate dehydrogenase] K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D XDD1_1192 proB; Glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D XDD1_1193 proA; Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D XDD1_1737 pip; Proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D XDD1_1590 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:xdo00340]
D XDD1_1528 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D XDD1_1521 hisI; Histidine biosynthesis bifunctional protein hisIE [Includes: Phosphoribosyl-AMP cyclohydrolase; Phosphoribosyl-ATP pyrophosphatase] K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D XDD1_1523 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide isomerase 1 K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D XDD1_1524 hisH; Imidazole glycerol phosphate synthase subunit hisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D XDD1_1522 hisF; Imidazole glycerol phosphate synthase subunit hisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D XDD1_1525 hisB; modular bifunctional: histidinol-phosphatase (N-terminal); imidazoleglycerol-phosphate dehydratase (C-terminal) K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D XDD1_1526 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D XDD1_1317 Histidinol-phosphate phosphatase HisN K05602 hisN; histidinol-phosphatase [EC:3.1.3.15]
D XDD1_1527 hisD; Bifunctional HisD: L-histidinal:NAD+ dehydrogenase; L-histidinol:NAD+ dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D XDD1_2629 hutH; Histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D XDD1_2628 hutU; Urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D XDD1_2625 hutI; Imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D XDD1_2626 hutG; Formimidoylglutamase K01479 hutG; formiminoglutamase [EC:3.5.3.8]
D XDD1_3133 aldA; putative aldehyde dehydrogenase AldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00350 Tyrosine metabolism [PATH:xdo00350]
D XDD1_1590 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D XDD1_1526 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D XDD1_3230 tyrB; Aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D XDD1_0657 feaB; protein FeaB, Phenylacetaldehyde dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
D XDD1_2291 frmA; S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D XDD1_2236 adhE; Aldehyde-alcohol dehydrogenase [Includes: Alcohol dehydrogenase; Acetaldehyde dehydrogenase [acetylating]; Pyruvate-formate-lyase deactivase] K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D XDD1_1520 yiaY; putative alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D XDD1_0415 putative 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component (4-HPA 3-monooxygenase large component) (4-HPA 3-hydroxylase) K00483 hpaB; 4-hydroxyphenylacetate 3-monooxygenase [EC:1.14.14.9]
D XDD1_1013 hpaB; 4-hydroxyphenylacetate 3-monooxygenase oxygenase component K00483 hpaB; 4-hydroxyphenylacetate 3-monooxygenase [EC:1.14.14.9]
D XDD1_1012 hpaC; 4-hydroxyphenylacetate 3-monooxygenase reductase component K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36]
D XDD1_1023 hpaD; 3,4-dihydroxyphenylacetate 2,3-dioxygenase K00455 hpaD; 3,4-dihydroxyphenylacetate 2,3-dioxygenase [EC:1.13.11.15]
D XDD1_1024 hpaE; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase K00151 hpaE; 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC:1.2.1.60]
D XDD1_1022 hpaF; 5-carboxymethyl-2-hydroxymuconate Delta-isomerase K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10]
D XDD1_1025 hpaG2; HpaG2 protein, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase component K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-]
D XDD1_1026 hpaG1; HpaG1 protein, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase component K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-]
D XDD1_1020 hpaH; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase K02509 hpaH; 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-]
D XDD1_1019 hpaI; 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]
D XDD1_1021 gabD; Succinate-semialdehyde dehydrogenase, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D XDD1_0583 Gentisate 1,2-dioxygenase K00450 E1.13.11.4; gentisate 1,2-dioxygenase [EC:1.13.11.4]
C 00360 Phenylalanine metabolism [PATH:xdo00360]
D XDD1_0657 feaB; protein FeaB, Phenylacetaldehyde dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
D XDD1_3928 paaK; Protein PaaK; Phenylacetate-coenzyme A ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D XDD1_3926 paaI; proetein PaaI; phenylacetate pathway hotdog-fold thioesterase K02614 paaI; acyl-CoA thioesterase [EC:3.1.2.-]
D XDD1_3918 paaA; protein PaaA; putative multicomponent oxygenase/reductase subunit for phenylacetic acid degradation K02609 paaA; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149]
D XDD1_3919 paaB; protein PaaB; putative multicomponent oxygenase/reductase subunit for phenylacetic acid degradation K02610 paaB; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB
D XDD1_3920 paaC; protein PaaC; multicomponent oxygenase/reductase subunit for phenylacetic acid degradation K02611 paaC; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149]
D XDD1_3921 paaD; protein PaaD; putative multicomponent oxygenase/reductase subunit for phenylacetic acid degradation K02612 paaD; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD
D XDD1_3922 paaE; proteon PaaE; subunit of the phenylacetly-CoA oxygenase/reductase K02613 paaE; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE
D XDD1_3924 paaG; protein PaaG; acyl-CoA hydratase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
D XDD1_3917 paaZ; Protein PaaZ; fused aldehyde dehydrogenase and enoyl-CoA hydratase K02618 paaZ; oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase [EC:3.3.2.12 1.2.1.91]
D XDD1_3927 paaJ; protein PaaJ; Beta-ketoadipyl-CoA thiolase K02615 paaJ; 3-oxo-5,6-didehydrosuberyl-CoA/3-oxoadipyl-CoA thiolase [EC:2.3.1.223 2.3.1.174]
D XDD1_3923 paaF; protein PaaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D XDD1_1792 xcnB; 3-hydroxyacyl-CoA dehydrogenase involved in xenocoumacin synthesis K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D XDD1_2708 hbd; putative 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D XDD1_3925 paaH; protein PaaH; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D XDD1_1590 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D XDD1_1526 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D XDD1_3230 tyrB; Aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D XDD1_1664 yhhY; Uncharacterized N-acetyltransferase yhhY K03825 aaaT; L-phenylalanine/L-methionine N-acetyltransferase [EC:2.3.1.53 2.3.1.-]
D XDD1_2257 dadA; D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00380 Tryptophan metabolism [PATH:xdo00380]
D XDD1_1343 sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D XDD1_2994 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D XDD1_3923 paaF; protein PaaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D XDD1_3188 fadB; Fatty acid oxidation complex subunit alpha [Includes: Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase] K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D XDD1_2622 fadJ; Fatty acid oxidation complex subunit alpha [Includes: Enoyl-CoA hydratase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase] K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D XDD1_0413 tnaA; Tryptophanase K01667 tnaA; tryptophanase [EC:4.1.99.1]
D XDD1_3133 aldA; putative aldehyde dehydrogenase AldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D XDD1_0585 Nitrilase family protein K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:xdo00400]
D XDD1_1216 aroF; Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D XDD1_1359 aroG; Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D XDD1_1814 aroH; Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D XDD1_0070 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D XDD1_3556 aroQ; 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D XDD1_0317 aroE; dehydroshikimate reductase, NAD(P)-binding K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D XDD1_0071 aroK; Shikimate kinase 1 K00891 aroK; shikimate kinase [EC:2.7.1.71]
D XDD1_1194 aroL; Shikimate kinase 2 K00891 aroK; shikimate kinase [EC:2.7.1.71]
D XDD1_1571 aroA; 3-enolpyruvylshikimate-5-phosphate synthetase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D XDD1_2633 aroC; Chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D XDD1_2215 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D XDD1_2216 trpG; Anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D XDD1_2217 trpD; Anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D XDD1_2218 trpC; Tryptophan biosynthesis protein trpCF [Includes: Indole-3-glycerol phosphate synthase; N-(5'-phospho-ribosyl)anthranilate isomerase] K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24]
D XDD1_2220 trpA; Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D XDD1_2219 trpB; Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D XDD1_1217 tyrA; bifunctional: chorismate mutase T (N-terminal); prephenate dehydrogenase (C-terminal) K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D XDD1_1218 pheA; bifunctional: chorismate mutase P (N-terminal); prephenate dehydratase (C-terminal) K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D XDD1_1590 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D XDD1_1526 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D XDD1_3230 tyrB; Aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:xdo00410]
D XDD1_2284 Pyridoxal-dependent decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D XDD1_2289 Pyridoxal-dependent decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D XDD1_1924 puuE; 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D XDD1_3133 aldA; putative aldehyde dehydrogenase AldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D XDD1_3102 panC; Pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D XDD1_2154 Omega-amino acid--pyruvate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D XDD1_3923 paaF; protein PaaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D XDD1_3188 fadB; Fatty acid oxidation complex subunit alpha [Includes: Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase] K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D XDD1_2622 fadJ; Fatty acid oxidation complex subunit alpha [Includes: Enoyl-CoA hydratase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase] K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D XDD1_1035 iolA; Methylmalonate semialdehyde dehydrogenase [acylating] 2 K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:xdo00430]
D XDD1_2284 Pyridoxal-dependent decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D XDD1_2289 Pyridoxal-dependent decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D XDD1_0828 ggt; Gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D XDD1_2604 pta; Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D XDD1_2603 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
D XDD1_1002 PEPM; Phosphoenolpyruvate phosphomutase K01841 pepM; phosphoenolpyruvate phosphomutase [EC:5.4.2.9]
C 00450 Selenocompound metabolism [PATH:xdo00450]
D XDD1_0202 metB; Cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D XDD1_0798 metC; Cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D XDD1_0847 Similar to aminotransferases K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D XDD1_3214 metE; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D XDD1_0530 Cystathionine beta-lyase (fragment) K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D XDD1_3039 metC; Cystathionine beta-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D XDD1_1555 trxB; Thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D XDD1_3168 cysN; Sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D XDD1_3169 cysD; Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D XDD1_2248 selD; Selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D XDD1_3954 selA; L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D XDD1_1445 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:xdo00460]
D XDD1_0585 Nitrilase family protein K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D XDD1_0828 ggt; Gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D XDD1_1569 ansB; L-asparaginase 2 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D XDD1_2251 ansA; L-asparaginase 1 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D XDD1_0046 asnA; asparagine synthetase A K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D XDD1_2792 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:xdo00470]
D XDD1_3231 alr; Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D XDD1_2256 alr; Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D XDD1_3016 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D XDD1_2719 Putative non-ribosomal peptide synthetase K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D XDD1_3534 putative alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D XDD1_1138 glsA; Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D XDD1_0264 murI; Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D XDD1_3020 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D XDD1_0710 putative aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D XDD1_0532 dcyD; D-cysteine desulfhydrase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]
D XDD1_0368 dapF; Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D XDD1_1165 lysA; Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D XDD1_1964 Achromobactin biosynthetic and transport gene lysA K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D XDD1_2257 dadA; D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00480 Glutathione metabolism [PATH:xdo00480]
D XDD1_0828 ggt; Gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D XDD1_3598 conserved protein of unknown function K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D XDD1_1202 gshA; Glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D XDD1_1158 gshB; Glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D XDD1_0665 pepA; putative cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D XDD1_2780 pepB; Peptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D XDD1_1595 pepN; Aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D XDD1_1188 pepD; Aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D XDD1_2888 putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D XDD1_2547 Glutathione S-transferase domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D XDD1_1531 yliJ; Uncharacterized GST-like protein yliJ K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D XDD1_3682 gor; Glutathione reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D XDD1_2473 icd; Isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D XDD1_1518 gnd; 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D XDD1_2077 zwf; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D XDD1_3072 Spermidine synthase (fragment) K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:xdo00511]
D XDD1_1301 Chitobiase precursor (N-acetyl-beta-glucosaminidase) (Beta-N-acetylhexosaminidase) K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00540 Lipopolysaccharide biosynthesis [PATH:xdo00540]
D XDD1_3294 lpxA; Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D XDD1_3012 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D XDD1_3296 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D XDD1_0939 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D XDD1_3293 lpxB; Lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D XDD1_1578 lpxK; Tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D XDD1_3523 kdsD; Arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D XDD1_2007 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D XDD1_3524 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D XDD1_1580 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D XDD1_0135 waaA; 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D XDD1_1717 htrB; Lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D XDD1_2073 msbB; Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D XDD1_2533 yeiU; Inner membrane protein yeiU K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29]
D XDD1_1783 pbgE; 4-amino-4-deoxy-L-arabinose transferase (lipid A modification) K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D XDD1_1167 gmhA; Phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D XDD1_3407 hldE; Bifunctional protein hldE [Includes: D-beta-D-heptose 7-phosphate kinase; D-beta-D-heptose 1-phosphate adenosyltransferase] K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D XDD1_3277 gmhB; D,D-heptose 1,7-bisphosphate phosphatase 1 K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D XDD1_0146 hldD; ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D XDD1_0144 rfaC; Lipopolysaccharide heptosyltransferase 1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D XDD1_0145 rfaF; ADP-heptose--LPS heptosyltransferase 2 K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D XDD1_0136 rfaQ; Lipopolysaccharide core heptosyltransferase rfaQ K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D XDD1_0137 Lipopolysaccharide core biosynthesis protein RfaG (Glucosyltransferase I) K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
D XDD1_0131 rfaL; O-antigen ligase K02847 waaL; O-antigen ligase [EC:2.4.99.26]
C 00542 O-Antigen repeat unit biosynthesis [PATH:xdo00542]
D XDD1_0346 wecA; Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:xdo00541]
D XDD1_2241 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D XDD1_3145 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D XDD1_2240 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D XDD1_2239 Uncharacterized 37.6 kDa protein in cld 5'region K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D XDD1_0351 rmlA; Glucose-1-phosphate thymidylyltransferase 2 K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D XDD1_0350 rffG; dTDP-glucose 4,6-dehydratase 2 K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D XDD1_0163 qnlA; dTDP-4-dehydrorhamnose reductase (L-QuiNAc synthase) K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D XDD1_0353 rffA; Lipopolysaccharide biosynthesis protein rffA K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
D XDD1_0352 rffC; Lipopolysaccharide biosynthesis protein rffC K16704 rffC; dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase [EC:2.3.1.210]
D XDD1_2181 manA; Mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D XDD1_0166 rfbB; Phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D XDD1_0167 manC; Mannose-1-phosphate guanylyltransferase 2 K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D XDD1_0031 glmU; Bifunctional protein glmU [Includes: UDP-N-acetylglucosamine pyrophosphorylase; Glucosamine-1-phosphate N-acetyltransferase] K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D XDD1_0162 qnlB; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D XDD1_0348 wecB; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D XDD1_0349 wecC; UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D XDD1_0164 capD; UDP-glucose 4-epimerase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
C 00550 Peptidoglycan biosynthesis [PATH:xdo00550]
D XDD1_3515 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D XDD1_0272 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D XDD1_3017 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D XDD1_3020 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D XDD1_3023 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D XDD1_3016 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D XDD1_3022 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D XDD1_3301 uppS; Undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D XDD1_1534 ybjG; putative undecaprenyl-diphosphatase ybjG K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D XDD1_3021 mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D XDD1_3018 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D XDD1_3501 mtgA; Monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D XDD1_0076 mrcA; Penicillin-binding protein 1A [Includes: Penicillin-insensitive transglycosylase; Penicillin-sensitive transpeptidase] K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D XDD1_3110 mrcB; Penicillin-binding protein 1B [Includes: Penicillin-insensitive transglycosylase; Penicillin-sensitive transpeptidase] K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D XDD1_2777 pbpC; Penicillin-binding protein 1C [Includes: Penicillin-insensitive transglycosylase; Transpeptidase-like module] K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D XDD1_1271 mrdA; Penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D XDD1_3024 ftsI; Peptidoglycan synthase ftsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D XDD1_1267 dacA; D-alanyl-D-alanine carboxypeptidase dacA K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D XDD1_1532 dacC; D-alanyl-D-alanine carboxypeptidase dacC K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D XDD1_0467 dacB; D-alanyl-D-alanine carboxypeptidase dacB K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:xdo00552]
D XDD1_1534 ybjG; putative undecaprenyl-diphosphatase ybjG K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D XDD1_0346 wecA; Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D XDD1_2719 Putative non-ribosomal peptide synthetase K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:xdo00543]
D XDD1_0346 wecA; Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D XDD1_0357 wecG; putative UDP-N-acetyl-D-mannosaminuronic acid transferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D XDD1_0355 wecF; 4-alpha-L-fucosyltransferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D XDD1_2574 ycdQ; Haemin storage system (HmsS protein of hmsHFRS Operon) K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
D XDD1_2575 HmsS; Haemin storage system (HmsS protein of hmsHFRS Operon) K11937 pgaD; biofilm PGA synthesis protein PgaD
D XDD1_0158 cysE; Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:xdo00730]
D XDD1_3615 thiC; Phosphomethylpyrimidine synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D XDD1_2463 thiD; Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D XDD1_3617 thiF; Sulfur carrier protein ThiS adenylyltransferase K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
D XDD1_2787 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D XDD1_0860 thiI; tRNA sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D XDD1_3620 thiH; 2-iminoacetate synthase K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D XDD1_0857 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D XDD1_3619 thiG; Thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10]
D XDD1_3616 thiE; Thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D XDD1_0841 thiL; Thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D XDD1_0399 rsgA; putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D XDD1_0658 phoA; Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D XDD1_2493 putative Thiamine kinase K07251 thiK; thiamine kinase [EC:2.7.1.89]
D XDD1_0910 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:xdo00740]
D XDD1_2202 ribA; GTP cyclohydrolase-2 K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D XDD1_0838 ribD; Riboflavin biosynthesis protein ribD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase] K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D XDD1_0371 conserved protein of unknown function K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104]
D XDD1_3405 ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D XDD1_0839 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D XDD1_0931 ribE; Riboflavin synthase alpha chain K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D XDD1_1852 ribE; Riboflavin synthase alpha chain K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D XDD1_0754 ribF; Riboflavin biosynthesis protein ribF [Includes: Riboflavin kinase; FMN adenylyltransferase] K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D XDD1_1586 aphA; Class B acid phosphatase K03788 aphA; acid phosphatase (class B) [EC:3.1.3.2]
D XDD1_1012 hpaC; 4-hydroxyphenylacetate 3-monooxygenase reductase component K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36]
D XDD1_3190 fre; NAD(P)H-flavin reductase K05368 fre; NAD(P)H-flavin reductase [EC:1.5.1.41]
D XDD1_3400 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D XDD1_2475 nudJ; Phosphatase nudJ K12152 nudJ; phosphatase NudJ [EC:3.6.1.-]
D XDD1_2658 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:xdo00750]
D XDD1_0998 Pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D XDD1_1866 pdxH; Pyridoxine/pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D XDD1_1868 pdxY; Pyridoxamine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D XDD1_0988 epd; D-erythrose-4-phosphate dehydrogenase K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72]
D XDD1_2649 pdxB; Erythronate-4-phosphate dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290]
D XDD1_1570 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D XDD1_3388 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D XDD1_2807 pdxJ; Pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D XDD1_0778 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:xdo00760]
D XDD1_1593 pncB; Nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D XDD1_0734 deoD; Purine nucleoside phosphorylase deoD-type K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D XDD1_0791 nadR; Trifunctional NAD biosynthesis/regulator protein NadR [Includes: Transcriptional regulator NadR; Nicotinamide mononucleotide adenylyltransferase; Ribosylnicotinamide kinase] K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D XDD1_0917 ushA; Protein UshA [Includes: UDP-sugar hydrolase; 5'-nucleotidase] K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D XDD1_3161 surE; Multifunctional protein surE [Includes: 5'/3'-nucleotidase; Exopolyphosphatase] K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D XDD1_1274 nadD; putative nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D XDD1_3127 mazG; Nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D XDD1_3614 nudC; NADH pyrophosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D XDD1_2795 nadE; putative glutamine-dependent NAD(+) synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D XDD1_1197 17.2 kDa protein 1 in recA 5'region K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D XDD1_2484 npdA; NAD-dependent deacetylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D XDD1_2823 ppnK; putative inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D XDD1_0260 sthA; Soluble pyridine nucleotide transhydrogenase K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1]
D XDD1_2110 pntA; NAD(P) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D XDD1_2111 pntB; NAD(P) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D XDD1_0586 Maleate cis-trans isomerase K01799 nicE; maleate isomerase [EC:5.2.1.1]
D XDD1_1021 gabD; Succinate-semialdehyde dehydrogenase, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:xdo00770]
D XDD1_0329 ilvG; Acetolactate synthase isozyme 2 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D XDD1_3030 ilvI; Acetolactate synthase isozyme 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D XDD1_3029 ilvH; Acetolactate synthase isozyme 3 small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D XDD1_0330 ilvM; Acetolactate synthase isozyme 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D XDD1_0338 ilvC; ketol-acid reductoisomerase, NAD(P)-binding K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D XDD1_0332 ilvD; Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D XDD1_3103 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D XDD1_0861 panE; 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D XDD1_3102 panC; Pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D XDD1_0274 coaA; Pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D XDD1_0120 coaBC; Coenzyme A biosynthesis bifunctional protein CoaBC [Includes: Phosphopantothenoylcysteine decarboxylase; Phosphopantothenate--cysteine ligase] K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D XDD1_3127 mazG; Nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D XDD1_0133 coaD; Phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D XDD1_3006 coaE; Dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D XDD1_2806 acpS; Holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D XDD1_0831 acpH; Acyl carrier protein phosphodiesterase K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14]
D XDD1_0331 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D XDD1_3133 aldA; putative aldehyde dehydrogenase AldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:xdo00780]
D XDD1_1473 bioC; Biotin synthesis protein BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D XDD1_3472 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D XDD1_2640 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase 1 K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D XDD1_3475 Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D XDD1_2501 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D XDD1_2932 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XDD1_3344 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XDD1_3474 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XDD1_2683 Short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XDD1_2503 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XDD1_3295 fabZ; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D XDD1_1869 fabI; Enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D XDD1_3890 bioH; Carboxylesterase BioH K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D XDD1_1474 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D XDD1_1476 bioA; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D XDD1_1472 bioD; Dethiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D XDD1_2173 bioD; putative dethiobiotin synthetase 2 K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D XDD1_1475 bioB; Biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D XDD1_0273 birA; Bifunctional protein BirA [Includes: Biotin operon repressor; Biotin--[acetyl-CoA-carboxylase] synthetase] K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:xdo00785]
D XDD1_1263 lipB; Octanoyltransferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D XDD1_1262 lipA; Lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D XDD1_2994 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D XDD1_2996 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D XDD1_2995 aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D XDD1_1342 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D XDD1_1343 sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D XDD1_2972 gcvP; Glycine dehydrogenase [decarboxylating] K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D XDD1_2974 gcvT; Aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D XDD1_2973 gcvH; Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:xdo00790]
D XDD1_1438 folE; GTP cyclohydrolase 1 K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D XDD1_0658 phoA; Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D XDD1_2062 nudB; Dihydroneopterin triphosphate pyrophosphatase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D XDD1_3412 folB; Dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D XDD1_3104 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridinepyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D XDD1_0473 folP; Dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D XDD1_3392 folA; Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D XDD1_2654 folC; Bifunctional protein folC [Includes: Folylpolyglutamate synthase; Dihydrofolate synthase] K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D XDD1_2202 ribA; GTP cyclohydrolase-2 K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D XDD1_3669 pabA; aminodeoxychorismate synthase subunit II, component of p-aminobenzoate synthase multienzyme complex K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D XDD1_1734 pabB; Para-aminobenzoate synthase component 1 K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D XDD1_3339 pab; Para-aminobenzoate synthase K13950 pabAB; para-aminobenzoate synthetase [EC:2.6.1.85]
D XDD1_2500 pabC; Aminodeoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D XDD1_3175 queD; 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D XDD1_3176 ygcF; 7-carboxy-7-deazaguanine synthase homolog K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D XDD1_0884 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D XDD1_3320 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D XDD1_1469 moaA; Molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D XDD1_1468 moaC; Molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D XDD1_1466 moaE; Molybdopterin synthase catalytic subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D XDD1_0775 mog; Molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D XDD1_1436 moeA; Molybdopterin molybdenumtransferase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D XDD1_3694 mobA; putative molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:xdo00670]
D XDD1_3392 folA; Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D XDD1_0945 folD; bifunctional: 5,10-methylene-tetrahydrofolate dehydrogenase; 5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D XDD1_2792 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D XDD1_2429 purN; Phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D XDD1_3607 purH; Bifunctional purine biosynthesis protein purH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase; IMP cyclohydrolase] K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D XDD1_0311 fmt; Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D XDD1_2974 gcvT; Aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D XDD1_3371 thyA; Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D XDD1_2243 purU; Formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D XDD1_0210 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D XDD1_2981 conserved protein of unknown function K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:xdo00860]
D XDD1_2698 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D XDD1_2003 hemA; Glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D XDD1_3119 hemL; Glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D XDD1_3193 hemB; Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D XDD1_0363 hemC; Porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D XDD1_0362 hemD; Uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D XDD1_3613 hemE; Uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D XDD1_2759 hemF; Coproporphyrinogen-III oxidase, aerobic K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D XDD1_3840 hemN; Oxygen-independent coproporphyrinogen-III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D XDD1_3184 hemG; Protoporphyrinogen IX dehydrogenase [menaquinone] K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D XDD1_0912 hemH; Ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D XDD1_0361 hemX; putative uroporphyrinogen-III C-methyltransferase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D XDD1_3170 cysG; Siroheme synthase [Includes: Uroporphyrinogen-III C-methyltransferase; Precorrin-2 dehydrogenase; Sirohydrochlorin ferrochelatase] K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D XDD1_0864 cyoE; Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D XDD1_0278 bfr; Bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:xdo00130]
D XDD1_0581 putative 4-hydroxybenzoyl-coa thioesterase protein K01075 E3.1.2.23; 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23]
D XDD1_3261 ubiC; chorismate pyruvate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D XDD1_3260 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D XDD1_3191 ubiD; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D XDD1_2658 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D XDD1_2975 visC; Protein visC K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D XDD1_2558 ubiG; 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D XDD1_2976 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D XDD1_3199 ubiE; Ubiquinone/menaquinone biosynthesis methyltransferase ubiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D XDD1_1294 ubiF; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D XDD1_2571 menF; isochorismate synthase (isochorismate hydroxymutase 2), menaquinone biosynthesis K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D XDD1_2570 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D XDD1_2569 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20]
D XDD1_2567 menC; o-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D XDD1_2566 menE; 2-succinylbenzoate--CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D XDD1_2568 menB; Naphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D XDD1_1846 ydiI; Esterase YdiI K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D XDD1_0194 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:xdo00900]
D XDD1_0857 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D XDD1_3302 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D XDD1_3164 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D XDD1_2001 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D XDD1_3163 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D XDD1_2770 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D XDD1_0750 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D XDD1_2658 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D XDD1_0858 ispA; Geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D XDD1_0459 ispB; Octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D XDD1_3301 uppS; Undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
D XDD1_3133 aldA; putative aldehyde dehydrogenase AldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00907 Pinene, camphor and geraniol degradation [PATH:xdo00907]
D XDD1_3923 paaF; protein PaaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D XDD1_3188 fadB; Fatty acid oxidation complex subunit alpha [Includes: Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase] K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D XDD1_2622 fadJ; Fatty acid oxidation complex subunit alpha [Includes: Enoyl-CoA hydratase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase] K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D XDD1_3189 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D XDD1_2621 fadI; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D XDD1_0987 tktA; Transketolase 1 K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:xdo00523]
D XDD1_0351 rmlA; Glucose-1-phosphate thymidylyltransferase 2 K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D XDD1_0350 rffG; dTDP-glucose 4,6-dehydratase 2 K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D XDD1_0163 qnlA; dTDP-4-dehydrorhamnose reductase (L-QuiNAc synthase) K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures [PATH:xdo01054]
D XDD1_0710 putative aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:xdo01053]
D XDD1_2571 menF; isochorismate synthase (isochorismate hydroxymutase 2), menaquinone biosynthesis K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D XDD1_2438 dhbA; 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase K00216 entA; 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [EC:1.3.1.28]
D XDD1_3143 nrgA; 4'-phosphopantetheinyl tranferase, involved in ability of P. luminescens to support nematode growth and reproduction K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
C 01055 Biosynthesis of vancomycin group antibiotics
D XDD1_0350 rffG; dTDP-glucose 4,6-dehydratase 2 K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D XDD1_2196 bla; Beta-lactamase CTX-M-2 K17836 penP; beta-lactamase class A [EC:3.5.2.6]
C 00332 Carbapenem biosynthesis [PATH:xdo00332]
D XDD1_1192 proB; Glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D XDD1_1193 proA; Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:xdo00261]
D XDD1_3168 cysN; Sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D XDD1_3169 cysD; Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D XDD1_3263 lysC; Lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D XDD1_0780 thrA; Bifunctional aspartokinase/homoserine dehydrogenase 1 [Includes: Aspartokinase; Homoserine dehydrogenase] K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D XDD1_0203 metL; Bifunctional aspartokinase/homoserine dehydrogenase 2 [Includes: Aspartokinase; Homoserine dehydrogenase] K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D XDD1_0009 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D XDD1_2416 dapA; Dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D XDD1_0744 dapB; Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:xdo00521]
D XDD1_3223 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D XDD1_1323 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D XDD1_2790 suhB; Inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D XDD1_1039 idhA; Inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D XDD1_0351 rmlA; Glucose-1-phosphate thymidylyltransferase 2 K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D XDD1_0350 rffG; dTDP-glucose 4,6-dehydratase 2 K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D XDD1_0163 qnlA; dTDP-4-dehydrorhamnose reductase (L-QuiNAc synthase) K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D XDD1_3223 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:xdo00525]
D XDD1_0351 rmlA; Glucose-1-phosphate thymidylyltransferase 2 K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D XDD1_0350 rffG; dTDP-glucose 4,6-dehydratase 2 K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:xdo00401]
D XDD1_1217 tyrA; bifunctional: chorismate mutase T (N-terminal); prephenate dehydrogenase (C-terminal) K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D XDD1_1590 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D XDD1_1526 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D XDD1_3230 tyrB; Aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis [PATH:xdo00405]
D XDD1_2436 phzE; Anthranilate synthase, phenazine specific [Includes: Glutamine amidotransferase] K13063 phzE; 2-amino-4-deoxychorismate synthase [EC:2.6.1.86]
D XDD1_2215 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D XDD1_2216 trpG; Anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D XDD1_2504 fabD; Malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D XDD1_2717 (Acyl-carrier-protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D XDD1_2932 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XDD1_3344 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XDD1_3474 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XDD1_2683 Short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XDD1_2503 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XDD1_1869 fabI; Enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics [PATH:xdo00998]
D XDD1_3462 acyl carrier protein K02078 acpP; acyl carrier protein
D XDD1_3463 acpP; Acyl carrier protein 2 K02078 acpP; acyl carrier protein
D XDD1_2502 acpP; Acyl carrier protein K02078 acpP; acyl carrier protein
D XDD1_2681 conserved protein of unknown function K02078 acpP; acyl carrier protein
D XDD1_1002 PEPM; Phosphoenolpyruvate phosphomutase K01841 pepM; phosphoenolpyruvate phosphomutase [EC:5.4.2.9]
C 00999 Biosynthesis of various plant secondary metabolites [PATH:xdo00999]
D XDD1_3138 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D XDD1_0317 aroE; dehydroshikimate reductase, NAD(P)-binding K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites [PATH:xdo00997]
D XDD1_2893 Pyoverdine biosynthesis protein K22952 pvcA; L-tyrosine isonitrile synthase [EC:4.1.99.24]
D XDD1_2892 Pyoverdine biosynthesis protein K22874 pvcB; L-tyrosine isonitrile desaturase/decarboxylase [EC:1.14.20.9 1.14.20.10]
D XDD1_1966 IucA/IucC K23374 sbnF; 2-[(L-alanin-3-ylcarbamoyl)methyl]-3-(2-aminoethylcarbamoyl)-2-hydroxypropanoate synthase [EC:6.3.2.55]
D XDD1_1968 Achromobactin biosynthetic and transport gene acsA K23375 sbnC; staphyloferrin B synthase [EC:6.3.2.56]
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:xdo00362]
D XDD1_1056 3-oxoadipate enol-lactonase / 4-carboxymuconolactone decarboxylase (fragment) K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24]
D XDD1_3189 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D XDD1_2621 fadI; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D XDD1_3770 putative tautomerase K2 K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D XDD1_0581 putative 4-hydroxybenzoyl-coa thioesterase protein K01075 E3.1.2.23; 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23]
D XDD1_2622 fadJ; Fatty acid oxidation complex subunit alpha [Includes: Enoyl-CoA hydratase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase] K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D XDD1_3188 fadB; Fatty acid oxidation complex subunit alpha [Includes: Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase] K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D XDD1_3923 paaF; protein PaaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D XDD1_1792 xcnB; 3-hydroxyacyl-CoA dehydrogenase involved in xenocoumacin synthesis K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D XDD1_2708 hbd; putative 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D XDD1_3925 paaH; protein PaaH; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
C 00627 Aminobenzoate degradation [PATH:xdo00627]
D XDD1_0585 Nitrilase family protein K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D XDD1_1638 acyP; Acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D XDD1_2658 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D XDD1_0582 conserved protein of unknown function K09461 E1.14.13.40; anthraniloyl-CoA monooxygenase [EC:1.14.13.40]
D XDD1_3923 paaF; protein PaaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:xdo00625]
D XDD1_1520 yiaY; putative alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D XDD1_2291 frmA; S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D XDD1_2236 adhE; Aldehyde-alcohol dehydrogenase [Includes: Alcohol dehydrogenase; Acetaldehyde dehydrogenase [acetylating]; Pyruvate-formate-lyase deactivase] K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D XDD1_3133 aldA; putative aldehyde dehydrogenase AldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
D XDD1_3770 putative tautomerase K2 K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00633 Nitrotoluene degradation [PATH:xdo00633]
D XDD1_2161 nemA; N-ethylmaleimide reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
C 00642 Ethylbenzene degradation
D XDD1_3189 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D XDD1_2621 fadI; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation [PATH:xdo00643]
D XDD1_0657 feaB; protein FeaB, Phenylacetaldehyde dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
D XDD1_0585 Nitrilase family protein K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation [PATH:xdo00930]
D XDD1_3923 paaF; protein PaaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D XDD1_3188 fadB; Fatty acid oxidation complex subunit alpha [Includes: Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase] K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D XDD1_2622 fadJ; Fatty acid oxidation complex subunit alpha [Includes: Enoyl-CoA hydratase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase] K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D XDD1_3770 putative tautomerase K2 K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00626 Naphthalene degradation [PATH:xdo00626]
D XDD1_1520 yiaY; putative alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D XDD1_2291 frmA; S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D XDD1_2236 adhE; Aldehyde-alcohol dehydrogenase [Includes: Alcohol dehydrogenase; Acetaldehyde dehydrogenase [acetylating]; Pyruvate-formate-lyase deactivase] K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:xdo03020]
D XDD1_3641 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D XDD1_3640 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D XDD1_0305 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D XDD1_3804 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:xdo03010]
D XDD1_1574 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D XDD1_3306 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D XDD1_0286 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D XDD1_0304 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D XDD1_0297 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D XDD1_0431 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D XDD1_3650 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D XDD1_0294 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D XDD1_3509 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D XDD1_0279 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D XDD1_0303 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D XDD1_3651 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D XDD1_0302 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D XDD1_0293 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D XDD1_0481 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D XDD1_1207 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D XDD1_0289 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D XDD1_0433 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D XDD1_0284 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D XDD1_0755 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D XDD1_3415 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D XDD1_3644 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D XDD1_0283 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D XDD1_0280 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D XDD1_0281 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D XDD1_0292 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D XDD1_0295 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D XDD1_3642 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D XDD1_0434 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D XDD1_3643 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D XDD1_3645 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D XDD1_3510 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D XDD1_0290 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D XDD1_0299 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D XDD1_0287 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D XDD1_0306 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D XDD1_0296 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D XDD1_1210 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D XDD1_1775 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D XDD1_0461 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D XDD1_0285 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D XDD1_0282 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D XDD1_0291 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D XDD1_2540 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D XDD1_0462 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D XDD1_0124 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D XDD1_0288 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D XDD1_0298 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D XDD1_0200 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D XDD1_2507 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D XDD1_0125 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D XDD1_1774 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D XDD1_0301 rpmJ; 50S ribosomal protein L36 2 K02919 RP-L36; large subunit ribosomal protein L36
D XDD1_16s_rRNA_6 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XDD1_16s_rRNA_2 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XDD1_16s_rRNA_7 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XDD1_16s_rRNA_4 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XDD1_16s_rRNA_1 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XDD1_16s_rRNA_5 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XDD1_16s_rRNA_3 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XDD1_23s_rRNA_2 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XDD1_23s_rRNA_1 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XDD1_23s_rRNA_4 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XDD1_23s_rRNA_3 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XDD1_23s_rRNA_6 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XDD1_23s_rRNA_7 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XDD1_23s_rRNA_5 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XDD1_5s_rRNA_8 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D XDD1_5s_rRNA_1 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D XDD1_5s_rRNA_5 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D XDD1_5s_rRNA_7 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D XDD1_5s_rRNA_6 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D XDD1_5s_rRNA_2 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D XDD1_5s_rRNA_3 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D XDD1_5s_rRNA_4 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:xdo00970]
D XDD1_tRNA2 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D XDD1_tRNA52 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D XDD1_tRNA54 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D XDD1_tRNA44 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D XDD1_tRNA45 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D XDD1_tRNA24 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D XDD1_tRNA25 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D XDD1_tRNA21 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D XDD1_tRNA12 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D XDD1_tRNA63 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D XDD1_tRNA37 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D XDD1_tRNA38 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D XDD1_tRNA40 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D XDD1_tRNA39 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D XDD1_tRNA10 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D XDD1_tRNA22 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D XDD1_tRNA55 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D XDD1_tRNA34 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D XDD1_tRNA71 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D XDD1_tRNA69 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D XDD1_tRNA26 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D XDD1_tRNA50 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D XDD1_tRNA9 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D XDD1_tRNA3 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D XDD1_tRNA16 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D XDD1_tRNA18 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D XDD1_tRNA17 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D XDD1_tRNA33 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D XDD1_tRNA56 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D XDD1_tRNA7 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D XDD1_tRNA13 tRNA-His K14226 tRNA-His; tRNA His
D XDD1_tRNA1 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D XDD1_tRNA51 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D XDD1_tRNA53 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D XDD1_tRNA75 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XDD1_tRNA35 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XDD1_tRNA19 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XDD1_tRNA14 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XDD1_tRNA74 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XDD1_tRNA73 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XDD1_tRNA68 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XDD1_tRNA27 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D XDD1_tRNA60 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D XDD1_tRNA61 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D XDD1_tRNA28 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D XDD1_tRNA29 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D XDD1_tRNA30 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D XDD1_tRNA67 tRNA-Met K14230 tRNA-Met; tRNA Met
D XDD1_tRNA70 tRNA-Met K14230 tRNA-Met; tRNA Met
D XDD1_tRNA20 tRNA-Met K14230 tRNA-Met; tRNA Met
D XDD1_tRNA46 tRNA-Met K14230 tRNA-Met; tRNA Met
D XDD1_tRNA47 tRNA-Met K14230 tRNA-Met; tRNA Met
D XDD1_tRNA48 tRNA-Met K14230 tRNA-Met; tRNA Met
D XDD1_tRNA72 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D XDD1_tRNA76 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D XDD1_tRNA41 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D XDD1_tRNA15 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D XDD1_tRNA49 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D XDD1_tRNA42 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D XDD1_tRNA32 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D XDD1_tRNA23 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D XDD1_tRNA64 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D XDD1_tRNA43 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D XDD1_tRNA8 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D XDD1_tRNA5 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D XDD1_tRNA4 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D XDD1_tRNA11 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D XDD1_tRNA36 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D XDD1_tRNA6 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D XDD1_tRNA57 tRNA-Val K14237 tRNA-Val; tRNA Val
D XDD1_tRNA59 tRNA-Val K14237 tRNA-Val; tRNA Val
D XDD1_tRNA58 tRNA-Val K14237 tRNA-Val; tRNA Val
D XDD1_tRNA62 tRNA-Val K14237 tRNA-Val; tRNA Val
D XDD1_tRNA65 tRNA-Val K14237 tRNA-Val; tRNA Val
D XDD1_tRNA66 tRNA-Val K14237 tRNA-Val; tRNA Val
D XDD1_2698 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D XDD1_1300 glnS; glutamine tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D XDD1_1200 alaS; Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D XDD1_3370 conserved protein of unknown function K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D XDD1_2598 Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D XDD1_2061 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D XDD1_1592 asnS; Asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D XDD1_3791 glyQ; Glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D XDD1_3790 glyS; Glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D XDD1_0100 tRNA synthetase class II (G H P and S) K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D XDD1_1772 thrS; Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D XDD1_1561 serS; Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D XDD1_3954 selA; L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D XDD1_0942 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D XDD1_1445 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D XDD1_0311 fmt; Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D XDD1_0667 valS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D XDD1_1277 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D XDD1_0753 ileS; Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D XDD1_2951 lysS; Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D XDD1_2054 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D XDD1_0238 putative Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D XDD1_3284 proS; Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D XDD1_2769 hisS; Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D XDD1_1776 pheS; Phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D XDD1_1777 pheT; Phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D XDD1_1867 tyrS; Tyrosyl-tRNA synthetase 1 K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D XDD1_0065 trpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:xdo03060]
D XDD1_0300 secY; Preprotein translocase subunit secY K03076 secY; preprotein translocase subunit SecY
D XDD1_3647 secE; Preprotein translocase subunit secE K03073 secE; preprotein translocase subunit SecE
D XDD1_0475 secG; Protein-export membrane protein secG K03075 secG; preprotein translocase subunit SecG
D XDD1_0835 secD; Protein-export membrane protein secD K03072 secD; preprotein translocase subunit SecD
D XDD1_0836 secF; Protein-export membrane protein secF K03074 secF; preprotein translocase subunit SecF
D XDD1_0834 conserved exported protein of unknown function K03210 yajC; preprotein translocase subunit YajC
D XDD1_3972 oxaA; Inner membrane protein oxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D XDD1_3009 secA; Protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D XDD1_0156 secB; Protein-export protein secB K03071 secB; preprotein translocase subunit SecB
D XDD1_3010 secM; Secretion monitor K13301 secM; secretion monitor
D XDD1_1206 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D XDD1_misc_RNA_19 SRP_bact K01983 ffs; SRP RNA
D XDD1_3578 ftsY; Cell division protein ftsY K03110 ftsY; fused signal recognition particle receptor
D XDD1_3196 tatA; Sec-independent protein translocase protein tatA/E homolog K03116 tatA; sec-independent protein translocase protein TatA
D XDD1_3195 tatB; Involved in membrane translocation of periplasmic proteins that preserves folded structures and bound ligands K03117 tatB; sec-independent protein translocase protein TatB
D XDD1_3194 tatC; Sec-independent protein translocase protein tatC K03118 tatC; sec-independent protein translocase protein TatC
D XDD1_2811 lepB; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D XDD1_0752 lspA; Lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:xdo04122]
D XDD1_2787 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D XDD1_1420 sseA; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D XDD1_3583 tusA; Sulfurtransferase tusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D XDD1_3652 tusB; Protein tusB K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D XDD1_3653 tusC; Protein tusC K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D XDD1_3654 tusD; Sulfurtransferase tusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D XDD1_1639 tusE; Sulfurtransferase tusE K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D XDD1_2476 mnmA; tRNA-specific 2-thiouridylase mnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D XDD1_1466 moaE; Molybdopterin synthase catalytic subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D XDD1_1469 moaA; Molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D XDD1_1467 moaD; Molybdopterin synthase sulfur carrier subunit K03636 moaD; sulfur-carrier protein
D XDD1_1435 moeB; Sulfur carrier protein moaD adenylyltransferase K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D XDD1_3861 Similar to MccB protein of Escherichia coli K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D XDD1_1468 moaC; Molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D XDD1_0775 mog; Molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D XDD1_0860 thiI; tRNA sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D XDD1_3618 thiS; Sulfur carrier protein ThiS K03154 thiS; sulfur carrier protein
D XDD1_3617 thiF; Sulfur carrier protein ThiS adenylyltransferase K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
C 03050 Proteasome
C 03018 RNA degradation [PATH:xdo03018]
D XDD1_3374 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D XDD1_2511 rne; Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D XDD1_0342 rhlB; ATP-dependent RNA helicase rhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D XDD1_3129 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D XDD1_0482 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D XDD1_1414 rhlE; ATP-dependent RNA helicase rhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D XDD1_0428 rnr; Ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D XDD1_0484 deaD; Cold-shock DEAD box protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D XDD1_0381 recQ; ATP-dependent DNA helicase recQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D XDD1_0345 rho; Transcription termination factor Rho K03628 rho; transcription termination factor Rho
D XDD1_0182 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D XDD1_0760 dnaK; Chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK
D XDD1_0647 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D XDD1_0420 hfq; Protein hfq K03666 hfq; host factor-I protein
D XDD1_2431 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D XDD1_3105 pcnB; Poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:xdo03030]
D XDD1_1738 holE; DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D XDD1_0983 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D XDD1_3291 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D XDD1_0904 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D XDD1_2497 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D XDD1_1275 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D XDD1_0722 holD; DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D XDD1_0666 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D XDD1_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D XDD1_1377 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D XDD1_1067 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D XDD1_3232 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D XDD1_3416 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D XDD1_1079 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XDD1_1388 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XDD1_3226 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XDD1_0982 rnhA; Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D XDD1_3292 rnhB; Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D XDD1_3672 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D XDD1_3802 ligB; DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D XDD1_2701 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:xdo03410]
D XDD1_2194 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D XDD1_2821 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D XDD1_1135 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D XDD1_0132 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D XDD1_2803 Similarities with the C-terminal region of 3-methyladenine DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D XDD1_3792 tag; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D XDD1_2246 xthA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D XDD1_2525 nfo; putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D XDD1_3672 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D XDD1_2953 recJ; Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D XDD1_3802 ligB; DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D XDD1_2701 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:xdo03420]
D XDD1_2488 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D XDD1_3227 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D XDD1_1471 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
D XDD1_1675 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
D XDD1_0372 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D XDD1_3672 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D XDD1_3802 ligB; DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D XDD1_2701 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:xdo03430]
D XDD1_3156 mutS; DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS
D XDD1_0418 mutL; DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL
D XDD1_3036 mutH; DNA mismatch repair protein mutH K03573 mutH; DNA mismatch repair protein MutH
D XDD1_0372 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D XDD1_2514 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D XDD1_2395 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D XDD1_0859 xseB; Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D XDD1_2953 recJ; Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D XDD1_1079 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XDD1_1388 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XDD1_3226 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XDD1_3291 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D XDD1_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D XDD1_0904 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D XDD1_1275 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D XDD1_2497 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D XDD1_0983 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D XDD1_1738 holE; DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D XDD1_0666 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D XDD1_0722 holD; DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D XDD1_3802 ligB; DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D XDD1_2701 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D XDD1_0068 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:xdo03440]
D XDD1_2953 recJ; Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D XDD1_1079 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XDD1_1388 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XDD1_3226 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XDD1_0003 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF
D XDD1_2808 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
D XDD1_0907 recR; Recombination protein recR K06187 recR; recombination protein RecR
D XDD1_1198 recA; Protein recA K03553 recA; recombination protein RecA
D XDD1_3672 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D XDD1_2065 ruvA; Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
D XDD1_2066 ruvB; Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D XDD1_2064 ruvC; Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D XDD1_3806 recG; ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D XDD1_3361 recB; Exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D XDD1_3363 recC; Exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D XDD1_3360 recD; Exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D XDD1_3291 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D XDD1_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D XDD1_0904 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D XDD1_1275 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D XDD1_2497 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D XDD1_0983 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D XDD1_1738 holE; DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D XDD1_0666 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D XDD1_0722 holD; DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D XDD1_0199 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D XDD1_0432 priB; Primosomal replication protein n K02686 priB; primosomal replication protein N
D XDD1_0902 priC; Primosomal replication protein N'' K04067 priC; primosomal replication protein N''
D XDD1_1916 conserved protein of unknown function K04067 priC; primosomal replication protein N''
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:xdo03250]
D XDD1_3670 rotA; Peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:xdo02010]
D XDD1_0183 sbp; Sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D XDD1_2735 cysU; Sulfate transport system permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D XDD1_2734 cysW; Sulfate transport system permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D XDD1_2733 cysA; Sulfate/thiosulfate import ATP-binding protein CysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D XDD1_1365 modA; Molybdate-binding periplasmic protein K02020 modA; molybdate transport system substrate-binding protein
D XDD1_1366 modB; Molybdenum transport system permease protein modB K02018 modB; molybdate transport system permease protein
D XDD1_1367 modC; Molybdenum import ATP-binding protein ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D XDD1_1362 modF; putative molybdenum transport ATP-binding protein ModF K05776 modF; molybdate transport system ATP-binding protein
D XDD1_3065 Periplasmic ferric iron-binding protein AfuA K02012 afuA; iron(III) transport system substrate-binding protein
D XDD1_3051 afuC; ferric transport protein (ABC superfamily, atp_bind) K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D XDD1_3375 thiB; Thiamine-binding periplasmic protein K02064 thiB; thiamine transport system substrate-binding protein
D XDD1_3376 thiP; Thiamine transport system permease protein thiP K02063 thiP; thiamine transport system permease protein
D XDD1_3377 thiQ; Thiamine import ATP-binding protein ThiQ K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D XDD1_0693 potD; Spermidine/putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D XDD1_0694 potC; Spermidine/putrescine transport system permease protein potC K11070 potC; spermidine/putrescine transport system permease protein
D XDD1_0695 potB; Spermidine/putrescine transport system permease protein potB K11071 potB; spermidine/putrescine transport system permease protein
D XDD1_0696 potA; Spermidine/putrescine import ATP-binding protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D XDD1_1254 proX; Glycine betaine-binding periplasmic protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D XDD1_1255 proW; Glycine betaine/L-proline transport system permease protein proW K02001 proW; glycine betaine/proline transport system permease protein
D XDD1_1256 proV; Glycine betaine/L-proline transport ATP-binding protein proV K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D XDD1_3635 malE; Maltose-binding periplasmic protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D XDD1_3634 malF; Maltose transport system permease protein malF K10109 malF; maltose/maltodextrin transport system permease protein
D XDD1_3633 malG; Maltose transport system permease protein malG K10110 malG; maltose/maltodextrin transport system permease protein
D XDD1_3636 malK; Maltose/maltodextrin import ATP-binding protein MalK K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D XDD1_3518 mlaC; putative phospholipid-binding protein mlaC K07323 mlaC; phospholipid transport system substrate-binding protein
D XDD1_3519 mlaD; putative phospholipid ABC transporter-binding protein mlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D XDD1_3520 mlaE; putative phospholipid ABC transporter permease protein mlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D XDD1_3517 conserved protein of unknown function K07122 mlaB; phospholipid transport system transporter-binding protein
D XDD1_3521 mlaF; putative phospholipid import ATP-binding protein mlaF K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D XDD1_0051 rbsB; D-ribose-binding periplasmic protein K10439 rbsB; ribose transport system substrate-binding protein
D XDD1_0050 rbsC; Ribose transport system permease protein rbsC K10440 rbsC; ribose transport system permease protein
D XDD1_0049 rbsA; Ribose import ATP-binding protein RbsA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D XDD1_3856 pstS; Phosphate-binding protein pstS K02040 pstS; phosphate transport system substrate-binding protein
D XDD1_3855 pstC; Phosphate transport system permease protein pstC K02037 pstC; phosphate transport system permease protein
D XDD1_3854 pstA; Phosphate transport system permease protein pstA K02038 pstA; phosphate transport system permease protein
D XDD1_3853 pstB; Phosphate import ATP-binding protein pstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D XDD1_1542 artI; putative ABC transporter arginine-binding protein 2 K09997 artI; arginine transport system substrate-binding protein
D XDD1_1540 artM; Arginine ABC transporter permease protein ArtM K09998 artM; arginine transport system permease protein
D XDD1_1541 artQ; Arginine ABC transporter permease protein ArtQ K09999 artQ; arginine transport system permease protein
D XDD1_1543 artP; Arginine transport ATP-binding protein ArtP K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D XDD1_1281 gltI; Glutamate/aspartate periplasmic-binding protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D XDD1_1279 gltK; Glutamate/aspartate transport system permease protein gltK K10002 gltK; glutamate/aspartate transport system permease protein
D XDD1_1280 gltJ; Glutamate/aspartate transport system permease protein gltJ K10003 gltJ; glutamate/aspartate transport system permease protein
D XDD1_1278 gltL; Glutamate/aspartate transport ATP-binding protein GltL K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D XDD1_0519 putative amino-acid ABC transporter-binding protein HI_1080 K02424 tcyA; L-cystine transport system substrate-binding protein
D XDD1_0522 tcyA; L-cystine-binding protein tcyA K02424 tcyA; L-cystine transport system substrate-binding protein
D XDD1_0520 tcyB; L-cystine transport system permease protein tcyB K10009 tcyB; L-cystine transport system permease protein
D XDD1_0521 putative amino-acid ABC transporter ATP-binding protein HI_1078 K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D XDD1_3280 metQ; D-methionine-binding lipoprotein metQ K02073 metQ; D-methionine transport system substrate-binding protein
D XDD1_3279 metI; D-methionine transport system permease protein metI K02072 metI; D-methionine transport system permease protein
D XDD1_3278 metN; Methionine import ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein
D XDD1_0815 oppA; OppA-like, oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XDD1_0816 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XDD1_0817 oppA; Periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D XDD1_0819 oppA; Periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D XDD1_2234 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XDD1_2235 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XDD1_2233 oppB; oligopeptide transport protein (ABC superfamily, membrane) K15581 oppB; oligopeptide transport system permease protein
D XDD1_2232 oppC; oligopeptide transport protein (ABC superfamily, membrane) K15582 oppC; oligopeptide transport system permease protein
D XDD1_2231 oppD; oligopeptide transport protein (ABC superfamily, atp_bind) K15583 oppD; oligopeptide transport system ATP-binding protein
D XDD1_2230 oppF; oligopeptide transport protein (ABC superfamily, atp_bind) K10823 oppF; oligopeptide transport system ATP-binding protein
D XDD1_3780 dppA; Periplasmic dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein
D XDD1_3779 dppB; Dipeptide transport system permease protein dppB K12369 dppB; dipeptide transport system permease protein
D XDD1_3778 dppC; Dipeptide transport system permease protein dppC K12370 dppC; dipeptide transport system permease protein
D XDD1_3777 dppD; Dipeptide transport ATP-binding protein DppD K12371 dppD; dipeptide transport system ATP-binding protein
D XDD1_3776 dppF; Dipeptide transport ATP-binding protein DppF K12372 dppF; dipeptide transport system ATP-binding protein
D XDD1_1874 sapA; Peptide transport periplasmic protein sapA K19226 sapA; cationic peptide transport system substrate-binding protein
D XDD1_1873 sapB; Peptide transport system permease protein sapB K19227 sapB; cationic peptide transport system permease protein
D XDD1_1872 sapC; Peptide transport system permease protein sapC K19228 sapC; cationic peptide transport system permease protein
D XDD1_1871 sapD; Peptide transport system ATP-binding protein sapD K19229 sapD; cationic peptide transport system ATP-binding protein
D XDD1_1870 sapF; Peptide transport system ATP-binding protein sapF K19230 sapF; cationic peptide transport system ATP-binding protein
D XDD1_1237 Ferric enterobactin binding periplasmic protein FepB K25286 fagD; iron-siderophore transport system substrate-binding protein
D XDD1_1239 fepD; ferric enterobactin transport protein (ABC superfamily, membrane) K23186 fepD; iron-siderophore transport system permease protein
D XDD1_1240 Ferric enterobactin transport system permease protein FepG K23187 fepG; iron-siderophore transport system permease protein
D XDD1_1241 fepC; ferric enterobactin transport protein (ABC superfamily, atp_bind) K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D XDD1_3121 btuF; Vitamin B12-binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein
D XDD1_2071 znuA; High-affinity zinc uptake system protein znuA K09815 znuA; zinc transport system substrate-binding protein
D XDD1_2069 znuB; High-affinity zinc uptake system membrane protein znuB K09816 znuB; zinc transport system permease protein
D XDD1_2070 znuC; Zinc import ATP-binding protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D XDD1_1760 Periplasmic chelated iron-binding protein yfeA precursor K11604 sitA; manganese/iron transport system substrate-binding protein
D XDD1_1758 Chelated iron transport system membrane protein yfeC K11605 sitC; manganese/iron transport system permease protein
D XDD1_1757 Chelated iron transport system membrane protein yfeD K11606 sitD; manganese/iron transport system permease protein
D XDD1_1759 Chelated iron transport system membrane protein yfeB K11607 sitB; manganese/iron transport system ATP-binding protein
D XDD1_3689 lsrB; Autoinducer 2-binding protein lsrB K10555 lsrB; AI-2 transport system substrate-binding protein
D XDD1_3687 lsrC; Autoinducer 2 import system permease protein lsrC K10556 lsrC; AI-2 transport system permease protein
D XDD1_3688 lsrD; Autoinducer 2 import system permease protein lsrD K10557 lsrD; AI-2 transport system permease protein
D XDD1_3686 lsrA; Autoinducer 2 import ATP-binding protein LsrA K10558 lsrA; AI-2 transport system ATP-binding protein
D XDD1_2485 lolE; Lipoprotein-releasing system transmembrane protein lolE K09808 lolC_E; lipoprotein-releasing system permease protein
D XDD1_2487 lolC; Lipoprotein-releasing system transmembrane protein lolC K09808 lolC_E; lipoprotein-releasing system permease protein
D XDD1_2486 lolD; Lipoprotein-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D XDD1_0664 lptF; Lipopolysaccharide export system permease protein lptF K07091 lptF; lipopolysaccharide export system permease protein
D XDD1_0663 lptG; Lipopolysaccharide export system permease protein lptG K11720 lptG; lipopolysaccharide export system permease protein
D XDD1_3527 lptB; Lipopolysaccharide export system ATP-binding protein LptB K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D XDD1_3576 ftsX; Cell division protein ftsX K09811 ftsX; cell division transport system permease protein
D XDD1_3577 ftsE; Cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D XDD1_1577 msbA; Lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D XDD1_0887 mdlA; Multidrug resistance-like ATP-binding protein MdlA K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D XDD1_0888 mdlB; Multidrug resistance-like ATP-binding protein MdlB K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D XDD1_3326 aprD; Alkaline protease secretion ATP-binding protein AprD K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D XDD1_1553 cydC; ATP-binding/permease protein CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D XDD1_1554 aarD; Transport ATP-binding protein AarD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D XDD1_1547 macB; Macrolide export ATP-binding/permease protein MacB K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D XDD1_2293 ABC transporter ATP-binding protein K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein
D XDD1_2669 putative ATP-binding protein K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS) [PATH:xdo02060]
D XDD1_2706 ptsI; Phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D XDD1_0803 Phosphotransferase system HPr enzyme K02784 ptsH; phosphocarrier protein HPr
D XDD1_2705 ptsH; Phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D XDD1_2707 crr; Glucose-specific phosphotransferase enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D XDD1_1299 PTS system N-acetylglucosamine-specific EIICBA component [Includes: N-acetylglucosamine permease IIC component; N-acetylglucosamine-specific phosphotransferase enzyme IIB component; N-acetylglucosamine-specific phosphotransferase enzyme IIA component] (fragment) K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D XDD1_0105 treB; PTS system trehalose-specific EIIBC component [Includes: Trehalose-specific phosphotransferase enzyme IIB component; Trehalose permease IIC component] K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D XDD1_3663 murP; PTS system N-acetylmuramic acid-specific EIIBC component [Includes: N-acetylmuramic acid-specific phosphotransferase enzyme IIB component; N-acetylmuramic acid permease IIC component] K11192 murP; N-acetylmuramic acid PTS system EIICB component [EC:2.7.1.192]
D XDD1_0805 conserved protein of unknown function K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D XDD1_0807 PTS system protein K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D XDD1_0806 celB; PTS system, IIC component K02761 celB; cellobiose PTS system EIIC component
D XDD1_1731 manX; PTS system mannose-specific EIIAB component [Includes: Mannose-specific phosphotransferase enzyme IIA component; Mannose-specific phosphotransferase enzyme IIB component] K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D XDD1_1730 manY; Mannose permease IIC component K02795 manY; mannose PTS system EIIC component
D XDD1_1729 manZ; Mannose permease IID component K02796 manZ; mannose PTS system EIID component
D XDD1_2526 fruK; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D XDD1_3373 ptsP; Phosphoenolpyruvate-protein phosphotransferase ptsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D XDD1_3532 ptsO; Phosphocarrier protein NPr K08485 ptsO; phosphocarrier protein NPr
D XDD1_3530 ptsN; Nitrogen regulatory protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:xdo03070]
D XDD1_3401 tolC; Outer membrane protein tolC K12340 tolC; outer membrane protein
D XDD1_2115 putative outer membrane efflux protein K12340 tolC; outer membrane protein
D XDD1_1161 Bifunctional prepilin peptidase: leader peptidase; methyl transferase (General Secretory Pathway) K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D XDD1_0835 secD; Protein-export membrane protein secD K03072 secD; preprotein translocase subunit SecD
D XDD1_0836 secF; Protein-export membrane protein secF K03074 secF; preprotein translocase subunit SecF
D XDD1_3647 secE; Preprotein translocase subunit secE K03073 secE; preprotein translocase subunit SecE
D XDD1_0475 secG; Protein-export membrane protein secG K03075 secG; preprotein translocase subunit SecG
D XDD1_0300 secY; Preprotein translocase subunit secY K03076 secY; preprotein translocase subunit SecY
D XDD1_0834 conserved exported protein of unknown function K03210 yajC; preprotein translocase subunit YajC
D XDD1_3972 oxaA; Inner membrane protein oxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D XDD1_3009 secA; Protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D XDD1_3010 secM; Secretion monitor K13301 secM; secretion monitor
D XDD1_3578 ftsY; Cell division protein ftsY K03110 ftsY; fused signal recognition particle receptor
D XDD1_0156 secB; Protein-export protein secB K03071 secB; preprotein translocase subunit SecB
D XDD1_1206 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D XDD1_3196 tatA; Sec-independent protein translocase protein tatA/E homolog K03116 tatA; sec-independent protein translocase protein TatA
D XDD1_3195 tatB; Involved in membrane translocation of periplasmic proteins that preserves folded structures and bound ligands K03117 tatB; sec-independent protein translocase protein TatB
D XDD1_3194 tatC; Sec-independent protein translocase protein tatC K03118 tatC; sec-independent protein translocase protein TatC
D XDD1_3767 xhlB; XhlB, XhlA hemolysin secretion/activation protein (TpsB) K11017 shlB; hemolysin activation/secretion protein
D XDD1_3768 xhlA; XhlA, Cell surface associated hemolysin (TpsA) K11016 shlA; hemolysin
D XDD1_0972 VgrG K11904 vgrG; type VI secretion system secreted protein VgrG
D XDD1_1114 putative VrgG protein K11904 vgrG; type VI secretion system secreted protein VgrG
D XDD1_1902 Conserved hypothetical protein (Vgr family protein, that may be secreted via SST VI system) K11904 vgrG; type VI secretion system secreted protein VgrG
D XDD1_2049 Conserved hypothetical protein (Vgr family protein, that may be secreted via SST VI system) K11904 vgrG; type VI secretion system secreted protein VgrG
D XDD1_3713 VgrG K11904 vgrG; type VI secretion system secreted protein VgrG
D XDD1_3736 VgrG K11904 vgrG; type VI secretion system secreted protein VgrG
D XDD1_3747 Lysozyme (fragment) K11904 vgrG; type VI secretion system secreted protein VgrG
D XDD1_2359 putative Vrg family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D XDD1_3766 hcp; Hemolysin-coregulated protein Hcp(probable secreted cytotoxin of SST VI component) K11903 hcp; type VI secretion system secreted protein Hcp
D XDD1_2035 putative secretion system effector of SST VI cluster (Hcp family) K11903 hcp; type VI secretion system secreted protein Hcp
D XDD1_1889 putative secretion system effector of SST VI cluster (Hcp family) K11903 hcp; type VI secretion system secreted protein Hcp
D XDD1_1896 conserved exported protein of unknown function (probable component of SST VI cluster) K11906 vasD; type VI secretion system protein VasD
D XDD1_3759 conserved hypothetical protein (probable lipoprotein of SST VI cluster) K11906 vasD; type VI secretion system protein VasD
D XDD1_2042 conserved exported protein of unknown function (probable gene of SST VI cluster) K11906 vasD; type VI secretion system protein VasD
D XDD1_3720 protein of unknown function K11891 impL; type VI secretion system protein ImpL
D XDD1_3752 Conserved hypothetical protein (probable component of SST VI cluster) K11891 impL; type VI secretion system protein ImpL
D XDD1_2039 Conserved hypothetical protein (ImcF-like domain protein precursor of SST VI cluster) K11891 impL; type VI secretion system protein ImpL
D XDD1_1893 Conserved hypothetical protein (ImcF domain protein precursor of SST VI cluster) K11891 impL; type VI secretion system protein ImpL
D XDD1_3705 conserved protein of unknown function K11891 impL; type VI secretion system protein ImpL
D XDD1_3757 conserved hypothetical protein (probable component of SST VI cluster) K11892 impK; type VI secretion system protein ImpK
D XDD1_2040 Conserved hypothetical protein with OmpA/MotB domains (probable component of SST VI cluster) K11892 impK; type VI secretion system protein ImpK
D XDD1_1894 Conserved hypothetical protein with OmpA/MotB domains (probable component of SST VI cluster) K11892 impK; type VI secretion system protein ImpK
D XDD1_3756 putative ClpA/B-type chaperone (Putative ATPase with chaperone activity; probable component of SST VI cluster) K11907 vasG; type VI secretion system protein VasG
D XDD1_2030 putative ClpA/B-type chaperone (Putative ATPase with chaperone activity; probable component of SST VI cluster) K11907 vasG; type VI secretion system protein VasG
D XDD1_1884 putative ClpA/B-type chaperone (Putative ATPase with chaperone activity; probable component of SST VI cluster) K11907 vasG; type VI secretion system protein VasG
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:xdo02020]
D XDD1_0825 phoR; Phosphate regulon sensor protein phoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D XDD1_0824 phoB; Phosphate regulon transcriptional regulatory protein phoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D XDD1_0658 phoA; Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D XDD1_3856 pstS; Phosphate-binding protein pstS K02040 pstS; phosphate transport system substrate-binding protein
D XDD1_2481 phoQ; sensory histidine kinase in two-component regulatory system with PhoP, regulates gene expression at low [Mg+], senses Mg+ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D XDD1_2480 phoP; response regulator in two-component regulatory system with PhoQ, regulates gene expression at low [Mg+] (OmpR family) K07660 phoP; two-component system, OmpR family, response regulator PhoP
D XDD1_0555 pagC; Virulence membrane protein pagC K07804 pagC; putatice virulence related protein PagC
D XDD1_3862 EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D XDD1_3863 ompR; Transcriptional regulatory protein ompR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D XDD1_1591 opnP; outer membrane protein, OpnP K09476 ompF; outer membrane pore protein F
D XDD1_0811 opnS; growth-phase-regulated outer membrane protein OpnS K09476 ompF; outer membrane pore protein F
D XDD1_0171 cpxA; sensory histidine kinase in two-component regulatory system with CpxR, regulates genes involved in folding/degrading periplasmic proteins, senses changes in the cell envelope K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D XDD1_0172 cpxR; response regulator in two-component regulatory system with CpxA, regulates genes involved in folding/degrading periplasmic proteins (OmpR family) K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D XDD1_2457 baeS; Signal transduction histidine-protein kinase BaeS K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D XDD1_2458 baeR; Transcriptional regulatory protein BaeR K07664 baeR; two-component system, OmpR family, response regulator BaeR
D XDD1_2454 mdtA; Multidrug resistance protein mdtA K07799 mdtA; membrane fusion protein, multidrug efflux system
D XDD1_2455 mdtB; Multidrug resistance protein mdtB K07788 mdtB; multidrug efflux pump
D XDD1_2456 mdtC; Multidrug resistance protein mdtC K07789 mdtC; multidrug efflux pump
D XDD1_1779 pgbP; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D XDD1_2378 flhD; Transcriptional activator FlhD K02403 flhD; flagellar transcriptional activator FlhD
D XDD1_2377 flhC; Flagellar transcriptional activator flhC K02402 flhC; flagellar transcriptional activator FlhC
D XDD1_2299 fliC; Flagellin K02406 fliC; flagellin
D XDD1_2298 fliA; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
D XDD1_2376 motA; Motility protein A K02556 motA; chemotaxis protein MotA
D XDD1_1326 kdpD; Sensor protein kdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D XDD1_1329 kdpA; Potassium-transporting ATPase A chain K01546 kdpA; potassium-transporting ATPase potassium-binding subunit
D XDD1_1328 kdpB; Potassium-transporting ATPase B chain K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6]
D XDD1_1327 kdpC; Potassium-transporting ATPase C chain K01548 kdpC; potassium-transporting ATPase KdpC subunit
D XDD1_1330 kdpF; Protein kdpF K01545 kdpF; potassium-transporting ATPase KdpF subunit
D XDD1_3503 arcB; Aerobic respiration control sensor protein ArcB K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D XDD1_0781 arcA; Aerobic respiration control protein ArcA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D XDD1_2646 Two-component sensor kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D XDD1_2645 tctD; Transcriptional regulatory protein tctD K07774 tctD; two-component system, OmpR family, response regulator TctD
D XDD1_2641 Uncharacterized 52.8 kDa protein in TAR-I ttuC' 3'region K07793 tctA; putative tricarboxylic transport membrane protein
D XDD1_2642 tctB; TctB protein K07794 tctB; putative tricarboxylic transport membrane protein
D XDD1_2643 conserved exported protein of unknown function K07795 tctC; putative tricarboxylic transport membrane protein
D XDD1_2719 Putative non-ribosomal peptide synthetase K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D XDD1_1441 sfcA; NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D XDD1_2408 narP; Nitrate/nitrite response regulator protein narP K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D XDD1_3590 frdA; Fumarate reductase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D XDD1_3591 frdB; Fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D XDD1_3592 frdC; Fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D XDD1_3593 frdD; Fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D XDD1_1725 uhpC; Regulatory protein uhpC K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D XDD1_3067 uhpC; Regulatory protein uhpC K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D XDD1_1724 uhpB; Sensor protein uhpB K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D XDD1_1723 uhpA; Transcriptional regulatory protein uhpA K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D XDD1_1722 uhpT; Hexose phosphate transport protein K07784 uhpT; MFS transporter, OPA family, hexose phosphate transport protein UhpT
D XDD1_3068 uhpB; Two-component sensor histidine kinase uhpb, phosphorylates uhpa K20263 fusK; two-component system, NarL family, sensor histidine kinase FusK [EC:2.7.13.3]
D XDD1_3069 uhpA; Transcriptional regulatory protein uhpA K20264 fusR; two-component system, NarL family, response regulator FusR
D XDD1_3282 rcsF; Protein rcsF K06080 rcsF; RcsF protein
D XDD1_2560 rcsC; Sensor kinase protein RcsC K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D XDD1_2562 rcsD; putative sensory histidine kinase (Phosphotransfer intermediate) associated with the RcsBC two-component regulatory system K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D XDD1_2561 rcsB; Capsular synthesis regulator component B K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D XDD1_3124 Sensor protein BarA K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D XDD1_1674 uvrY; Response regulator uvrY K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D XDD1_1201 csrA; Carbon storage regulator homolog K03563 csrA; carbon storage regulator
D XDD1_2105 yraI; putative fimbrial chaperone yraI precursor K07346 fimC; fimbrial chaperone protein
D XDD1_2104 lpfC; Outer membrane usher protein, lpfC(FimD) precursor K07347 fimD; outer membrane usher protein
D XDD1_2345 fimD; Outer membrane usher protein precursor K07347 fimD; outer membrane usher protein
D XDD1_3308 glnD; [Protein-PII] uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D XDD1_2794 glnB; Nitrogen regulatory protein P-II 1 K04751 glnB; nitrogen regulatory protein P-II 1
D XDD1_3834 ntrB; Nitrogen regulation protein NR(II) K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D XDD1_3835 glnG; Nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D XDD1_3833 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D XDD1_3134 dctA; C4-dicarboxylate transport protein K11103 dctA; aerobic C4-dicarboxylate transport protein
D XDD1_3528 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D XDD1_2798 yfhK; putative sensor-like histidine kinase yfhK K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D XDD1_2796 conserved protein of unknown function K07715 glrR; two-component system, NtrC family, response regulator GlrR
D XDD1_misc_RNA_11 tke1 K15841 glmY; small regulatory RNA GlmY
D XDD1_2370 cheR; Chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D XDD1_2372 tse; Methyl-accepting chemotaxis serine transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D XDD1_2371 tsr; Methyl-accepting chemotaxis protein I K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor
D XDD1_2373 cheW; Chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D XDD1_2374 cheA; Chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D XDD1_2368 cheY; Chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D XDD1_2369 cheB; Chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D XDD1_1278 gltL; Glutamate/aspartate transport ATP-binding protein GltL K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D XDD1_1279 gltK; Glutamate/aspartate transport system permease protein gltK K10002 gltK; glutamate/aspartate transport system permease protein
D XDD1_1280 gltJ; Glutamate/aspartate transport system permease protein gltJ K10003 gltJ; glutamate/aspartate transport system permease protein
D XDD1_1281 gltI; Glutamate/aspartate periplasmic-binding protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D XDD1_3667 crp; Catabolite gene activator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D XDD1_1138 glsA; Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D XDD1_1346 cydA; Cytochrome d ubiquinol oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D XDD1_1976 cioA; Ubiquinol oxidase subunit I, cyanide insensitive K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D XDD1_1347 cydB; Cytochrome d ubiquinol oxidase subunit 2 K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D XDD1_1975 cioB; Ubiquinol oxidase subunit II, cyanide insensitive K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D XDD1_1348 ybgT; conserved exported protein of unknown function K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D XDD1_1310 RTX toxin ABC transporter K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB
D XDD1_1309 RtxD; RTX toxin ABC transporter protein RtxD K12532 rtxD; membrane fusion protein, RTX toxin transport system
D XDD1_1308 ABC transporter RTX toxin K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE
D XDD1_3401 tolC; Outer membrane protein tolC K12340 tolC; outer membrane protein
D XDD1_2115 putative outer membrane efflux protein K12340 tolC; outer membrane protein
D XDD1_1049 Mcf2 K19615 fitD; insecticidal toxin
D XDD1_0162 qnlB; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D XDD1_0348 wecB; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D XDD1_0349 wecC; UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D XDD1_2341 flgM; Negative regulator of flagellin synthesis K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:xdo02024]
D XDD1_1203 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D XDD1_0420 hfq; Protein hfq K03666 hfq; host factor-I protein
D XDD1_2215 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D XDD1_2216 trpG; Anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D XDD1_1216 aroF; Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D XDD1_1359 aroG; Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D XDD1_1814 aroH; Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D XDD1_2436 phzE; Anthranilate synthase, phenazine specific [Includes: Glutamine amidotransferase] K13063 phzE; 2-amino-4-deoxychorismate synthase [EC:2.6.1.86]
D XDD1_2798 yfhK; putative sensor-like histidine kinase yfhK K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D XDD1_2796 conserved protein of unknown function K07715 glrR; two-component system, NtrC family, response regulator GlrR
D XDD1_2378 flhD; Transcriptional activator FlhD K02403 flhD; flagellar transcriptional activator FlhD
D XDD1_2377 flhC; Flagellar transcriptional activator flhC K02402 flhC; flagellar transcriptional activator FlhC
D XDD1_3068 uhpB; Two-component sensor histidine kinase uhpb, phosphorylates uhpa K20263 fusK; two-component system, NarL family, sensor histidine kinase FusK [EC:2.7.13.3]
D XDD1_3069 uhpA; Transcriptional regulatory protein uhpA K20264 fusR; two-component system, NarL family, response regulator FusR
D XDD1_2284 Pyridoxal-dependent decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D XDD1_2289 Pyridoxal-dependent decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D XDD1_3689 lsrB; Autoinducer 2-binding protein lsrB K10555 lsrB; AI-2 transport system substrate-binding protein
D XDD1_3687 lsrC; Autoinducer 2 import system permease protein lsrC K10556 lsrC; AI-2 transport system permease protein
D XDD1_3688 lsrD; Autoinducer 2 import system permease protein lsrD K10557 lsrD; AI-2 transport system permease protein
D XDD1_3686 lsrA; Autoinducer 2 import ATP-binding protein LsrA K10558 lsrA; AI-2 transport system ATP-binding protein
D XDD1_3684 lsrK; Autoinducer 2 kinase lsrK K11216 lsrK; autoinducer-2 kinase [EC:2.7.1.189]
D XDD1_3685 lsrR; Transcriptional regulator lsrR K11531 lsrR; lsr operon transcriptional repressor
D XDD1_3690 lsrF; Uncharacterized aldolase lsrF K08321 lsrF; 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase [EC:2.3.1.245]
D XDD1_3691 lsrG; Autoinducer 2-degrading protein lsrG K11530 lsrG; (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase [EC:5.3.1.32]
D XDD1_2724 Putative spermidine/putrescine ABC transporter K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D XDD1_2725 putative binding-protein-dependent transport system membrane protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D XDD1_2726 putative binding-protein-dependent transport system membrane protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D XDD1_2727 potA; Spermidine/putrescine import ATP-binding protein PotA K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D XDD1_2934 pixA; PixA K20275 aidA; nematocidal protein AidA
D XDD1_3031 putative long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D XDD1_2084 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D XDD1_3667 crp; Catabolite gene activator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D XDD1_3256 zur; Zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D XDD1_1102 toxA; Methyl transferase ToxA protein, involved in toxoflavin (phytotoxin) biosynthesis K20331 toxA; toxoflavin synthase [EC:2.1.1.349]
D XDD1_1320 Similar to TRP-1 protein encoded by the toxA gene of Burkholderia glumae K20331 toxA; toxoflavin synthase [EC:2.1.1.349]
D XDD1_1316 ToxA protein K20331 toxA; toxoflavin synthase [EC:2.1.1.349]
D XDD1_1508 ToxA protein K20331 toxA; toxoflavin synthase [EC:2.1.1.349]
D XDD1_2202 ribA; GTP cyclohydrolase-2 K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D XDD1_0838 ribD; Riboflavin biosynthesis protein ribD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase] K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D XDD1_0214 conserved membrane protein of unknown function K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D XDD1_3544 conserved protein of unknown function K18306 mexH; membrane fusion protein, multidrug efflux system
D XDD1_3545 Uncharacterized transporter HI_0895 K18307 mexI; multidrug efflux pump
D XDD1_0815 oppA; OppA-like, oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XDD1_0816 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XDD1_0817 oppA; Periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D XDD1_0819 oppA; Periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D XDD1_2234 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XDD1_2235 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XDD1_2233 oppB; oligopeptide transport protein (ABC superfamily, membrane) K15581 oppB; oligopeptide transport system permease protein
D XDD1_2232 oppC; oligopeptide transport protein (ABC superfamily, membrane) K15582 oppC; oligopeptide transport system permease protein
D XDD1_2231 oppD; oligopeptide transport protein (ABC superfamily, atp_bind) K15583 oppD; oligopeptide transport system ATP-binding protein
D XDD1_2230 oppF; oligopeptide transport protein (ABC superfamily, atp_bind) K10823 oppF; oligopeptide transport system ATP-binding protein
D XDD1_3972 oxaA; Inner membrane protein oxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D XDD1_3647 secE; Preprotein translocase subunit secE K03073 secE; preprotein translocase subunit SecE
D XDD1_0475 secG; Protein-export membrane protein secG K03075 secG; preprotein translocase subunit SecG
D XDD1_0300 secY; Preprotein translocase subunit secY K03076 secY; preprotein translocase subunit SecY
D XDD1_0834 conserved exported protein of unknown function K03210 yajC; preprotein translocase subunit YajC
D XDD1_3009 secA; Protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D XDD1_3578 ftsY; Cell division protein ftsY K03110 ftsY; fused signal recognition particle receptor
D XDD1_0156 secB; Protein-export protein secB K03071 secB; preprotein translocase subunit SecB
D XDD1_1206 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D XDD1_3773 plcN; Non-hemolytic phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:xdo02030]
D XDD1_2372 tse; Methyl-accepting chemotaxis serine transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D XDD1_2371 tsr; Methyl-accepting chemotaxis protein I K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor
D XDD1_3635 malE; Maltose-binding periplasmic protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D XDD1_0051 rbsB; D-ribose-binding periplasmic protein K10439 rbsB; ribose transport system substrate-binding protein
D XDD1_3780 dppA; Periplasmic dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein
D XDD1_2374 cheA; Chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D XDD1_2373 cheW; Chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D XDD1_2368 cheY; Chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D XDD1_2367 cheZ; Protein phosphatase CheZ K03414 cheZ; chemotaxis protein CheZ
D XDD1_2369 cheB; Chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D XDD1_2370 cheR; Chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D XDD1_2311 fliG; Flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D XDD1_2318 fliM; Flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D XDD1_2319 fliN; Flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D XDD1_2376 motA; Motility protein A K02556 motA; chemotaxis protein MotA
D XDD1_2375 motB; Motility protein B K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:xdo02040]
D XDD1_2308 fliE; Flagellar hook-basal body complex protein fliE K02408 fliE; flagellar hook-basal body complex protein FliE
D XDD1_2310 fliF; Flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF
D XDD1_2311 fliG; Flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D XDD1_2312 fliH; Flagellar assembly protein fliH K02411 fliH; flagellar assembly protein FliH
D XDD1_2313 fliI; Flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D XDD1_2314 fliJ; Flagellar fliJ protein K02413 fliJ; flagellar protein FliJ
D XDD1_2315 Flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D XDD1_2317 fliL; Flagellar protein FliL K02415 fliL; flagellar protein FliL
D XDD1_2318 fliM; Flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D XDD1_2319 fliN; Flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D XDD1_2320 mopB; Protein mopB K02418 fliO; flagellar protein FliO/FliZ
D XDD1_2321 fliP; Flagellar biosynthetic protein fliP K02419 fliP; flagellar biosynthesis protein FliP
D XDD1_2322 fliQ; Flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D XDD1_2323 fliR; Flagellar biosynthetic protein fliR K02421 fliR; flagellar biosynthesis protein FliR
D XDD1_2352 flhA; Flagellar biosynthesis protein flhA K02400 flhA; flagellar biosynthesis protein FlhA
D XDD1_2353 flhB; Flagellar biosynthetic protein flhB K02401 flhB; flagellar biosynthesis protein FlhB
D XDD1_2340 flgA; Flagella basal body P-ring formation protein flgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D XDD1_2339 flgB; Flagellar basal-body rod protein flgB K02387 flgB; flagellar basal-body rod protein FlgB
D XDD1_2338 flgC; Flagellar basal-body rod protein flgC K02388 flgC; flagellar basal-body rod protein FlgC
D XDD1_2337 flgD; Basal-body rod modification protein flgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D XDD1_2336 flgE; flagellar biosynthesis; hook protein K02390 flgE; flagellar hook protein FlgE
D XDD1_2335 flgF; Flagellar basal-body rod protein flgF K02391 flgF; flagellar basal-body rod protein FlgF
D XDD1_2334 flgG; Flagellar basal-body rod protein flgG K02392 flgG; flagellar basal-body rod protein FlgG
D XDD1_2333 flgH; Flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D XDD1_2332 flgI; Flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D XDD1_2331 flgJ; Peptidoglycan hydrolase flgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D XDD1_2330 flgK; Flagellar hook-associated protein 1 K02396 flgK; flagellar hook-associated protein 1
D XDD1_2329 flgL; Flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D XDD1_2299 fliC; Flagellin K02406 fliC; flagellin
D XDD1_2301 fliD; Flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2
D XDD1_2302 fliS; Flagellar protein fliS K02422 fliS; flagellar secretion chaperone FliS
D XDD1_2303 fliT; Flagellar protein fliT K02423 fliT; flagellar protein FliT
D XDD1_2376 motA; Motility protein A K02556 motA; chemotaxis protein MotA
D XDD1_2375 motB; Motility protein B K02557 motB; chemotaxis protein MotB
D XDD1_2341 flgM; Negative regulator of flagellin synthesis K02398 flgM; negative regulator of flagellin synthesis FlgM
D XDD1_2342 flgN; Flagella synthesis protein flgN K02399 flgN; flagellar biosynthesis protein FlgN
D XDD1_0519 putative amino-acid ABC transporter-binding protein HI_1080 K02424 tcyA; L-cystine transport system substrate-binding protein
D XDD1_0522 tcyA; L-cystine-binding protein tcyA K02424 tcyA; L-cystine transport system substrate-binding protein
D XDD1_2297 fliZ; Protein fliZ K02425 fliZ; regulator of sigma S factor FliZ
D XDD1_3417 rpoD; RNA polymerase sigma factor rpoD K03086 rpoD; RNA polymerase primary sigma factor
D XDD1_2378 flhD; Transcriptional activator FlhD K02403 flhD; flagellar transcriptional activator FlhD
D XDD1_2377 flhC; Flagellar transcriptional activator flhC K02402 flhC; flagellar transcriptional activator FlhC
D XDD1_3528 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D XDD1_2298 fliA; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D XDD1_3129 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:xdo01501]
D XDD1_1591 opnP; outer membrane protein, OpnP K09476 ompF; outer membrane pore protein F
D XDD1_0811 opnS; growth-phase-regulated outer membrane protein OpnS K09476 ompF; outer membrane pore protein F
D XDD1_0871 ampG; Protein AmpG K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D XDD1_2492 nagZ; Beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D XDD1_0815 oppA; OppA-like, oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XDD1_0816 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XDD1_0817 oppA; Periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D XDD1_0819 oppA; Periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D XDD1_2234 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XDD1_2235 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XDD1_2233 oppB; oligopeptide transport protein (ABC superfamily, membrane) K15581 oppB; oligopeptide transport system permease protein
D XDD1_2232 oppC; oligopeptide transport protein (ABC superfamily, membrane) K15582 oppC; oligopeptide transport system permease protein
D XDD1_2231 oppD; oligopeptide transport protein (ABC superfamily, atp_bind) K15583 oppD; oligopeptide transport system ATP-binding protein
D XDD1_2230 oppF; oligopeptide transport protein (ABC superfamily, atp_bind) K10823 oppF; oligopeptide transport system ATP-binding protein
D XDD1_2196 bla; Beta-lactamase CTX-M-2 K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D XDD1_0898 acrA; Acriflavine resistance protein A K03585 acrA; membrane fusion protein, multidrug efflux system
D XDD1_0897 acrB; Acriflavine resistance protein B K18138 acrB; multidrug efflux pump
D XDD1_3401 tolC; Outer membrane protein tolC K12340 tolC; outer membrane protein
D XDD1_2115 putative outer membrane efflux protein K12340 tolC; outer membrane protein
D XDD1_0076 mrcA; Penicillin-binding protein 1A [Includes: Penicillin-insensitive transglycosylase; Penicillin-sensitive transpeptidase] K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D XDD1_1271 mrdA; Penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D XDD1_3024 ftsI; Peptidoglycan synthase ftsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:xdo01502]
D XDD1_3016 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D XDD1_3231 alr; Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D XDD1_2256 alr; Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D XDD1_3022 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D XDD1_3021 mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D XDD1_3018 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:xdo01503]
D XDD1_2481 phoQ; sensory histidine kinase in two-component regulatory system with PhoP, regulates gene expression at low [Mg+], senses Mg+ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D XDD1_2480 phoP; response regulator in two-component regulatory system with PhoQ, regulates gene expression at low [Mg+] (OmpR family) K07660 phoP; two-component system, OmpR family, response regulator PhoP
D XDD1_1779 pgbP; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D XDD1_1780 pbgP; putative sugar transferase with nucleotide-diphospho-sugar transferase domain K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D XDD1_1781 pbgP; putative formyltransferase K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305]
D XDD1_1782 pbgP; PbgP4 protein K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D XDD1_1783 pbgE; 4-amino-4-deoxy-L-arabinose transferase (lipid A modification) K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D XDD1_1785 pbgE; putative membrane protein K12963 arnF; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnF
D XDD1_1874 sapA; Peptide transport periplasmic protein sapA K19226 sapA; cationic peptide transport system substrate-binding protein
D XDD1_1873 sapB; Peptide transport system permease protein sapB K19227 sapB; cationic peptide transport system permease protein
D XDD1_1872 sapC; Peptide transport system permease protein sapC K19228 sapC; cationic peptide transport system permease protein
D XDD1_1871 sapD; Peptide transport system ATP-binding protein sapD K19229 sapD; cationic peptide transport system ATP-binding protein
D XDD1_1870 sapF; Peptide transport system ATP-binding protein sapF K19230 sapF; cationic peptide transport system ATP-binding protein
D XDD1_3329 prtA; Protease prtA K01406 prtC; serralysin [EC:3.4.24.40]
D XDD1_3285 nlpE; Outer membrane lipoprotein, involved in copper homeostasis and in adhesion K06079 cutF; copper homeostasis protein (lipoprotein)
D XDD1_0171 cpxA; sensory histidine kinase in two-component regulatory system with CpxR, regulates genes involved in folding/degrading periplasmic proteins, senses changes in the cell envelope K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D XDD1_0172 cpxR; response regulator in two-component regulatory system with CpxA, regulates genes involved in folding/degrading periplasmic proteins (OmpR family) K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D XDD1_0417 amiB; N-acetylmuramoyl-L-alanine amidase AmiB K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D XDD1_3358 amiC; N-acetylmuramoyl-L-alanine amidase AmiC K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D XDD1_1848 ycfS; putative L,D-transpeptidase YcfS K19236 ycfS; L,D-transpeptidase YcfS
D XDD1_3673 dsbA; Thiol:disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D XDD1_3670 rotA; Peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D XDD1_0898 acrA; Acriflavine resistance protein A K03585 acrA; membrane fusion protein, multidrug efflux system
D XDD1_0897 acrB; Acriflavine resistance protein B K18138 acrB; multidrug efflux pump
D XDD1_3401 tolC; Outer membrane protein tolC K12340 tolC; outer membrane protein
D XDD1_2115 putative outer membrane efflux protein K12340 tolC; outer membrane protein
D XDD1_3294 lpxA; Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D XDD1_2719 Putative non-ribosomal peptide synthetase K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:xdo01000]
C 01001 Protein kinases [BR:xdo01001]
D XDD1_0725 putative counterpart of the neighbouring HipB-like protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D XDD1_0152 hipA; HipA toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D XDD1_3932 HipA-like protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D XDD1_0825 phoR; Phosphate regulon sensor protein phoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D XDD1_2481 phoQ; sensory histidine kinase in two-component regulatory system with PhoP, regulates gene expression at low [Mg+], senses Mg+ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D XDD1_3862 EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D XDD1_0171 cpxA; sensory histidine kinase in two-component regulatory system with CpxR, regulates genes involved in folding/degrading periplasmic proteins, senses changes in the cell envelope K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D XDD1_2457 baeS; Signal transduction histidine-protein kinase BaeS K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D XDD1_1326 kdpD; Sensor protein kdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D XDD1_3503 arcB; Aerobic respiration control sensor protein ArcB K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D XDD1_2646 Two-component sensor kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D XDD1_1724 uhpB; Sensor protein uhpB K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D XDD1_3068 uhpB; Two-component sensor histidine kinase uhpb, phosphorylates uhpa K20263 fusK; two-component system, NarL family, sensor histidine kinase FusK [EC:2.7.13.3]
D XDD1_2562 rcsD; putative sensory histidine kinase (Phosphotransfer intermediate) associated with the RcsBC two-component regulatory system K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D XDD1_2560 rcsC; Sensor kinase protein RcsC K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D XDD1_3124 Sensor protein BarA K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D XDD1_0488 yehU; YehU, sensory kinase in two-component system with YehT K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D XDD1_3834 ntrB; Nitrogen regulation protein NR(II) K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D XDD1_2798 yfhK; putative sensor-like histidine kinase yfhK K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D XDD1_2374 cheA; Chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:xdo01009]
D XDD1_0182 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D XDD1_0908 htpG; Chaperone protein htpG K04079 HSP90A; molecular chaperone HtpG
D XDD1_0793 serB; 3-phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:xdo01002]
D XDD1_0752 lspA; Lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D XDD1_1161 Bifunctional prepilin peptidase: leader peptidase; methyl transferase (General Secretory Pathway) K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D XDD1_1985 pla; Coagulase/fibrinolysin K08566 pla; plasminogen activator [EC:3.4.23.48]
D XDD1_0843 pcp; Pyrrolidone-carboxylate peptidase 1 K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
D XDD1_2393 guaA; GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D XDD1_2535 spr; Lipoprotein spr K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D XDD1_1786 nlpC; putative lipoprotein nlpC K13695 nlpC; probable lipoprotein NlpC
D XDD1_2657 purF; Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D XDD1_3504 gltB; Glutamate synthase [NADPH] large chain K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D XDD1_0030 glmS; Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D XDD1_1848 ycfS; putative L,D-transpeptidase YcfS K19236 ycfS; L,D-transpeptidase YcfS
D XDD1_1587 ycbB; putative L,D-transpeptidase YcbB K21470 ycbB; L,D-transpeptidase YcbB
D XDD1_1361 conserved membrane protein of unknown function K07052 K07052; CAAX protease family protein
D XDD1_1595 pepN; Aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D XDD1_0098 prlC; Oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D XDD1_3329 prtA; Protease prtA K01406 prtC; serralysin [EC:3.4.24.40]
D XDD1_3362 ptrA; Protease 3 K01407 ptrA; protease III [EC:3.4.24.55]
D XDD1_3774 yhjJ; Protein yhjJ K07263 pqqL; zinc protease [EC:3.4.24.-]
D XDD1_0665 pepA; putative cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D XDD1_2780 pepB; Peptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D XDD1_2410 dapE; Succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D XDD1_2483 pepT; Peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D XDD1_1188 pepD; Aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D XDD1_2072 yebA; Uncharacterized metalloprotease yebA K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D XDD1_3152 map; Methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D XDD1_3307 map; Methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D XDD1_3187 pepQ; Xaa-Pro dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D XDD1_2977 pepP; Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D XDD1_0472 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D XDD1_1749 htpX; Protease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D XDD1_1719 yggG; Uncharacterized metalloprotease yggG K07387 K07387; metalloprotease [EC:3.4.24.-]
D XDD1_2422 conserved exported protein of unknown function K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D XDD1_3299 rseP; Protease rseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D XDD1_3513 degQ; Protease degQ K04772 degQ; serine protease DegQ [EC:3.4.21.-]
D XDD1_3514 degS; Protease degS K04691 hhoB; serine protease DegS [EC:3.4.21.-]
D XDD1_2401 ptrB; Protease 2 K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D XDD1_1267 dacA; D-alanyl-D-alanine carboxypeptidase dacA K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D XDD1_1532 dacC; D-alanyl-D-alanine carboxypeptidase dacC K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D XDD1_0661 ampH; Penicillin-binding protein AmpH K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-]
D XDD1_0467 dacB; D-alanyl-D-alanine carboxypeptidase dacB K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D XDD1_0876 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D XDD1_0019 conserved protein of unknown function K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D XDD1_0878 lon; Lon protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D XDD1_1605 ycbZ; putative Lon protease homolog K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-]
D XDD1_3257 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D XDD1_2811 lepB; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D XDD1_1737 pip; Proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D XDD1_1748 prc; Tail-specific protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D XDD1_2250 sppA; Protease 4 K04773 sppA; protease IV [EC:3.4.21.-]
D XDD1_2209 sohB; putative protease sohB K04774 sohB; serine protease SohB [EC:3.4.21.-]
D XDD1_3894 glpG; Rhomboid protease glpG K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105]
D XDD1_1688 putative prohead protease K06904 GP4; Escherichia/Staphylococcus phage prohead protease
D XDD1_3084 putative prohead protease K06904 GP4; Escherichia/Staphylococcus phage prohead protease
D XDD1_2750 putative prohead protease K06904 GP4; Escherichia/Staphylococcus phage prohead protease
D XDD1_3241 putative prohead protease K06904 GP4; Escherichia/Staphylococcus phage prohead protease
D XDD1_0196 hslV; ATP-dependent protease subunit HslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D XDD1_0828 ggt; Gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D XDD1_2461 yegQ; Uncharacterized protease yegQ K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D XDD1_3538 pmbA; protein pmbA K03592 pmbA; PmbA protein
D XDD1_3546 tldD; Protein tldD K03568 tldD; TldD protein
D XDD1_2898 eco; Ecotin K08276 eco; ecotin
D XDD1_2778 yfhM; Uncharacterized lipoprotein yfhM K06894 yfhM; alpha-2-macroglobulin
D XDD1_0425 hflC; Protein hflC K04087 hflC; modulator of FtsH protease HflC
D XDD1_0424 hflK; Protein hflK K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:xdo01003]
D XDD1_3501 mtgA; Monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D XDD1_2777 pbpC; Penicillin-binding protein 1C [Includes: Penicillin-insensitive transglycosylase; Transpeptidase-like module] K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D XDD1_3110 mrcB; Penicillin-binding protein 1B [Includes: Penicillin-insensitive transglycosylase; Penicillin-sensitive transpeptidase] K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D XDD1_0076 mrcA; Penicillin-binding protein 1A [Includes: Penicillin-insensitive transglycosylase; Penicillin-sensitive transpeptidase] K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D XDD1_0357 wecG; putative UDP-N-acetyl-D-mannosaminuronic acid transferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D XDD1_0355 wecF; 4-alpha-L-fucosyltransferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D XDD1_0346 wecA; Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D XDD1_2574 ycdQ; Haemin storage system (HmsS protein of hmsHFRS Operon) K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:xdo01005]
D XDD1_3294 lpxA; Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D XDD1_3293 lpxB; Lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D XDD1_3012 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D XDD1_3296 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D XDD1_0939 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D XDD1_1578 lpxK; Tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D XDD1_1717 htrB; Lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D XDD1_2073 msbB; Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D XDD1_2533 yeiU; Inner membrane protein yeiU K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29]
D XDD1_0135 waaA; 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D XDD1_1783 pbgE; 4-amino-4-deoxy-L-arabinose transferase (lipid A modification) K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D XDD1_2007 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D XDD1_1580 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D XDD1_3524 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D XDD1_3523 kdsD; Arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D XDD1_0144 rfaC; Lipopolysaccharide heptosyltransferase 1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D XDD1_0134 kdtX; Lipopolysaccharide core biosynthesis glycosyltransferase kdtX K12984 waaE; (heptosyl)LPS beta-1,4-glucosyltransferase [EC:2.4.1.-]
D XDD1_0145 rfaF; ADP-heptose--LPS heptosyltransferase 2 K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D XDD1_0137 Lipopolysaccharide core biosynthesis protein RfaG (Glucosyltransferase I) K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
D XDD1_0131 rfaL; O-antigen ligase K02847 waaL; O-antigen ligase [EC:2.4.99.26]
D XDD1_0136 rfaQ; Lipopolysaccharide core heptosyltransferase rfaQ K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D XDD1_1167 gmhA; Phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D XDD1_3277 gmhB; D,D-heptose 1,7-bisphosphate phosphatase 1 K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D XDD1_3407 hldE; Bifunctional protein hldE [Includes: D-beta-D-heptose 7-phosphate kinase; D-beta-D-heptose 1-phosphate adenosyltransferase] K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D XDD1_0146 hldD; ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D XDD1_0169 wbyJ; putative mannosyltransferase K13000 wbyJ; mannosyltransferase [EC:2.4.1.-]
D XDD1_0356 wzyE; putative ECA polymerase K02853 wzyE; enterobacterial common antigen polymerase [EC:2.4.99.27]
D XDD1_0346 wecA; Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:xdo01011]
D XDD1_3515 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D XDD1_0272 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D XDD1_3017 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D XDD1_3020 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D XDD1_3023 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D XDD1_3016 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D XDD1_3231 alr; Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D XDD1_2256 alr; Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D XDD1_0264 murI; Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D XDD1_3021 mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D XDD1_3018 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D XDD1_1534 ybjG; putative undecaprenyl-diphosphatase ybjG K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D XDD1_2052 mviN; Virulence factor mviN K03980 murJ; putative peptidoglycan lipid II flippase
D XDD1_0076 mrcA; Penicillin-binding protein 1A [Includes: Penicillin-insensitive transglycosylase; Penicillin-sensitive transpeptidase] K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D XDD1_3110 mrcB; Penicillin-binding protein 1B [Includes: Penicillin-insensitive transglycosylase; Penicillin-sensitive transpeptidase] K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D XDD1_2777 pbpC; Penicillin-binding protein 1C [Includes: Penicillin-insensitive transglycosylase; Transpeptidase-like module] K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D XDD1_1271 mrdA; Penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D XDD1_3024 ftsI; Peptidoglycan synthase ftsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D XDD1_1267 dacA; D-alanyl-D-alanine carboxypeptidase dacA K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D XDD1_1532 dacC; D-alanyl-D-alanine carboxypeptidase dacC K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D XDD1_0467 dacB; D-alanyl-D-alanine carboxypeptidase dacB K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D XDD1_0661 ampH; Penicillin-binding protein AmpH K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-]
D XDD1_3501 mtgA; Monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D XDD1_1848 ycfS; putative L,D-transpeptidase YcfS K19236 ycfS; L,D-transpeptidase YcfS
D XDD1_1587 ycbB; putative L,D-transpeptidase YcbB K21470 ycbB; L,D-transpeptidase YcbB
D XDD1_2535 spr; Lipoprotein spr K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D XDD1_2072 yebA; Uncharacterized metalloprotease yebA K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D XDD1_0788 slt; Soluble lytic murein transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D XDD1_3357 mltA; Membrane-bound lytic murein transglycosylase A K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D XDD1_2090 putative lipoprotein K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D XDD1_1133 mltC; Membrane-bound lytic murein transglycosylase C K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29]
D XDD1_0979 mltD; Membrane-bound lytic murein transglycosylase D K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D XDD1_1761 lytic murein endotransglycosylase E, membrane-bound (fragment) K08308 mltE; peptidoglycan lytic transglycosylase E [EC:4.2.2.29]
D XDD1_2800 mltF; Membrane-bound lytic murein transglycosylase F K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D XDD1_2499 conserved protein of unknown function K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D XDD1_0417 amiB; N-acetylmuramoyl-L-alanine amidase AmiB K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D XDD1_3358 amiC; N-acetylmuramoyl-L-alanine amidase AmiC K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D XDD1_2468 amiD; N-acetylmuramoyl-L-alanine amidase AmiD K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D XDD1_3002 ampD; 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
D XDD1_1849 lpp; Major outer membrane lipoprotein K06078 lpp; murein lipoprotein
C 01004 Lipid biosynthesis proteins [BR:xdo01004]
D XDD1_2504 fabD; Malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D XDD1_2717 (Acyl-carrier-protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D XDD1_0688 putative 3-oxoacyl-[acyl-carrier-protein] synthase III (Beta-ketoacyl-ACP synthase III) (KAS III) K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D XDD1_2680 3-oxoacyl-[acyl-carrier-protein] synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D XDD1_2505 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D XDD1_3472 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D XDD1_2640 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase 1 K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D XDD1_3475 Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D XDD1_2501 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D XDD1_2932 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XDD1_3344 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XDD1_3474 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XDD1_2683 Short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XDD1_2503 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XDD1_1604 fabA; 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D XDD1_3295 fabZ; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D XDD1_1869 fabI; Enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D XDD1_0927 tesA; Acyl-CoA thioesterase I K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D XDD1_0891 tesB; Acyl-CoA thioesterase 2 K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D XDD1_2225 yciA; Acyl-CoA thioester hydrolase yciA K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D XDD1_0883 tesC; Long-chain acyl-CoA thioesterase tesC K12500 tesC; thioesterase III [EC:3.1.2.-]
D XDD1_0061 acs; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D XDD1_2885 prpE; Propionate--CoA ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D XDD1_3031 putative long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D XDD1_2084 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D XDD1_3259 plsB; Glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D XDD1_2506 plsX; Phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D XDD1_3413 plsY; Glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D XDD1_3394 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:xdo01008]
D XDD1_3143 nrgA; 4'-phosphopantetheinyl tranferase, involved in ability of P. luminescens to support nematode growth and reproduction K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
D XDD1_0710 putative aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01006 Prenyltransferases [BR:xdo01006]
D XDD1_0858 ispA; Geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D XDD1_0459 ispB; Octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D XDD1_3301 uppS; Undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D XDD1_0419 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D XDD1_0194 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D XDD1_3260 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D XDD1_0864 cyoE; Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:xdo01007]
D XDD1_2698 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D XDD1_1300 glnS; glutamine tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D XDD1_3106 gluQ; Glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D XDD1_1867 tyrS; Tyrosyl-tRNA synthetase 1 K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D XDD1_0065 trpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D XDD1_0942 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D XDD1_2054 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D XDD1_1445 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D XDD1_0753 ileS; Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D XDD1_0667 valS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D XDD1_1277 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D XDD1_2951 lysS; Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D XDD1_2061 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D XDD1_1592 asnS; Asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D XDD1_2769 hisS; Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D XDD1_3791 glyQ; Glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D XDD1_3790 glyS; Glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D XDD1_1561 serS; Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D XDD1_0238 putative Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D XDD1_3284 proS; Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D XDD1_0100 tRNA synthetase class II (G H P and S) K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D XDD1_1772 thrS; Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D XDD1_1200 alaS; Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D XDD1_3370 conserved protein of unknown function K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D XDD1_2598 Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D XDD1_1776 pheS; Phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D XDD1_1777 pheT; Phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D XDD1_1590 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D XDD1_3797 avtA; Valine--pyruvate aminotransferase K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D XDD1_2597 yfbQ; Uncharacterized aminotransferase yfbQ K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D XDD1_3230 tyrB; Aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D XDD1_1526 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D XDD1_0147 kbl; 2-amino-3-ketobutyrate CoA ligase (glycine acetyltransferase) K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D XDD1_1474 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D XDD1_0847 Similar to aminotransferases K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D XDD1_2154 Omega-amino acid--pyruvate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D XDD1_3668 argD; Acetylornithine/succinyldiaminopimelate aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D XDD1_2670 astC; Succinylornithine transaminase K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D XDD1_1924 puuE; 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D XDD1_1960 dat; Diaminobutyrate--2-oxoglutarate aminotransferase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
D XDD1_1476 bioA; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D XDD1_3119 hemL; Glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D XDD1_0331 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D XDD1_1570 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D XDD1_1779 pgbP; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D XDD1_0353 rffA; Lipopolysaccharide biosynthesis protein rffA K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:xdo00194]
D XDD1_0033 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D XDD1_0034 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D XDD1_0035 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D XDD1_0036 atpA; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D XDD1_0037 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D XDD1_0038 atpF; ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D XDD1_0039 atpE; ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D XDD1_0040 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D XDD1_0041 atpI; ATP synthase protein I K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:xdo03000]
D XDD1_0699 Cytosine-specific methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D XDD1_1017 hpaA; Regulator of the 4HPA-hydroxylase operon K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein
D XDD1_2467 soxS; Regulatory protein soxS K13631 soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator
D XDD1_0784 rob; Right origin-binding protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D XDD1_2929 exsA; Exoenzyme S synthesis regulatory protein exsA K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D XDD1_1048 Transcriptional regulator, AraC family protein K13652 K13652; AraC family transcriptional regulator
D XDD1_3348 gcvA; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D XDD1_0337 ilvY; HTH-type transcriptional activator ilvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D XDD1_3215 metR; HTH-type transcriptional regulator metR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D XDD1_0756 nhaR; Transcriptional activator protein nhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D XDD1_0259 oxyR; Hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D XDD1_2985 iciA; Chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D XDD1_3032 leuO; putative HTH-type transcriptional regulator leuO K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D XDD1_2206 cysB; HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D XDD1_0711 putative LysR-family transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D XDD1_0089 Regulatory protein LysR family (Substrate-binding) K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D XDD1_1660 putative Lysr-type transcriptional regulatory protein K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D XDD1_0326 hdfR; HTH-type transcriptional regulator hdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D XDD1_3895 glpR; Glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D XDD1_0053 rbsR; transcriptional repressor for ribose metabolism (GalR/LacI family) K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XDD1_0386 putative transcriptional repressor for ribose metabolism (GalR/LacI family) K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XDD1_0849 galR; HTH-type transcriptional regulator galR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XDD1_0198 cytR; HTH-type transcriptional repressor CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D XDD1_3028 fruR; Fructose repressor K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D XDD1_1857 purR; HTH-type transcriptional repressor purR K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D XDD1_0606 gntR; HTH-type transcriptional regulator gntR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D XDD1_2627 hutC; Histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D XDD1_2258 fadR; Fatty acid metabolism regulator protein K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D XDD1_2997 pdhR; Pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D XDD1_0391 Transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D XDD1_2962 Transcriptional regulator, GntR family with aminotransferase domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D XDD1_1184 betI; HTH-type transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D XDD1_0899 acrR; HTH-type transcriptional regulator AcrR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D XDD1_0118 slmA; HTH-type protein slmA K05501 slmA; TetR/AcrR family transcriptional regulator
D XDD1_0261 fabR; HTH-type transcriptional repressor fabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D XDD1_1412 ybiH; Uncharacterized HTH-type transcriptional regulator ybiH K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D XDD1_0045 asnC; transcriptional regulator of asparagine biosynthesis (AsnC family) K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D XDD1_1557 lrp; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D XDD1_0886 ybaO; Uncharacterized HTH-type transcriptional regulator ybaO K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D XDD1_3629 malT; HTH-type transcriptional regulator malT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D XDD1_1863 slyA; Transcriptional regulator slyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D XDD1_1249 mprA; Transcriptional repressor mprA K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D XDD1_0922 cueR; HTH-type transcriptional regulator CueR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D XDD1_0307 zntR; HTH-type transcriptional regulator zntR K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D XDD1_3542 soxR; Redox-sensitive transcriptional activator soxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D XDD1_1302 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D XDD1_3256 zur; Zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D XDD1_3267 iclR; Acetate operon repressor K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D XDD1_3667 crp; Catabolite gene activator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D XDD1_2129 fnr; Fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D XDD1_2788 iscR; HTH-type transcriptional regulator iscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D XDD1_0427 nsrR; HTH-type transcriptional repressor nsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D XDD1_2075 hexR; HTH-type transcriptional regulator hexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D XDD1_0273 birA; Bifunctional protein BirA [Includes: Biotin operon repressor; Biotin--[acetyl-CoA-carboxylase] synthetase] K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D XDD1_3563 fis; DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D XDD1_0787 trpR; Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D XDD1_2881 prpR; Propionate catabolism operon regulatory protein K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D XDD1_0456 sfsB; Sugar fermentation stimulation protein B (Ner-like protein) K07724 ner; Ner family transcriptional regulator
D XDD1_0652 NER; DNA-binding protein Ner K07724 ner; Ner family transcriptional regulator
D XDD1_1649 sfsB; Sugar fermentation stimulation protein B (Ner-like protein) K07724 ner; Ner family transcriptional regulator
D XDD1_1695 putative Sugar fermentation stimulation protein B (Ner-like protein) K07724 ner; Ner family transcriptional regulator
D XDD1_1054 sfsB; Sugar fermentation stimulation protein B (Ner-like protein) K07724 ner; Ner family transcriptional regulator
D XDD1_1081 sfsB; sugar fermentation stimulation protein B (Ner-like protein) K07724 ner; Ner family transcriptional regulator
D XDD1_1391 sfsB; sugar fermentation stimulation protein B (Ner-like protein) K07724 ner; Ner family transcriptional regulator
D XDD1_3094 putative Sugar fermentation stimulation protein B (Ner-like protein) (modular protein) K07724 ner; Ner family transcriptional regulator
D XDD1_p0001 putative Sugar fermentation stimulation protein B (Ner-like protein) K07724 ner; Ner family transcriptional regulator
D XDD1_2758 putative Sugar fermentation stimulation protein B (Ner-like protein) K07724 ner; Ner family transcriptional regulator
D XDD1_3233 putative Sugar fermentation stimulation protein B (Ner-like protein) K07724 ner; Ner family transcriptional regulator
D XDD1_0791 nadR; Trifunctional NAD biosynthesis/regulator protein NadR [Includes: Transcriptional regulator NadR; Nicotinamide mononucleotide adenylyltransferase; Ribosylnicotinamide kinase] K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D XDD1_3141 Predicted transcription regulator containing HTH domain K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D XDD1_0610 putative Similar to bacterial regulatory protein K07726 K07726; putative transcriptional regulator
D XDD1_3264 HipB-like protein (HipAB toxin-antitoxin system) K07726 K07726; putative transcriptional regulator
D XDD1_2775 yozG; Uncharacterized HTH-type transcriptional regulator yozG K07727 K07727; putative transcriptional regulator
D XDD1_0201 metJ; Met repressor K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D XDD1_2296 putA; Bifunctional protein putA [Includes: Proline dehydrogenase; Delta-1-pyrroline-5-carboxylate dehydrogenase] K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D XDD1_2307 relB; RelB antitoxin K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D XDD1_0808 conserved protein of unknown function K03491 licR; probable licABCH operon transcriptional regulator
D XDD1_0873 bolA; Protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D XDD1_2611 ParB domain protein nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D XDD1_3192 rfaH; Transcriptional activator rfaH K05785 rfaH; transcriptional antiterminator RfaH
D XDD1_0453 argR; Arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D XDD1_1296 nagC; N-acetylglucosamine repressor K02565 nagC; N-acetylglucosamine repressor
D XDD1_1881 tyrR; Transcriptional regulatory protein tyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D XDD1_2417 gcvR; Glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D XDD1_0107 paaX; Phenylacetic acid degradation operon negative regulatory protein paaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D XDD1_1875 pspF; Psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator
D XDD1_1878 pspC; Phage shock protein C K03973 pspC; phage shock protein C
D XDD1_3685 lsrR; Transcriptional regulator lsrR K11531 lsrR; lsr operon transcriptional repressor
D XDD1_3535 rnk; regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase
D XDD1_1679 putative phage-related protein K07733 alpA; prophage regulatory protein
D XDD1_1062 alpA; Prophage CP4-57 regulatory protein K07733 alpA; prophage regulatory protein
D XDD1_3251 Prophage CP4-57 regulatory K07733 alpA; prophage regulatory protein
D XDD1_3074 Prophage CP4-57 regulatory K07733 alpA; prophage regulatory protein
D XDD1_2741 Prophage CP4-57 regulatory K07733 alpA; prophage regulatory protein
D XDD1_1157 conserved protein of unknown function K07735 algH; putative transcriptional regulator
D XDD1_3107 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D XDD1_0837 nrdR; Transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D XDD1_1191 crl; Sigma factor-binding protein crl K11926 crl; sigma factor-binding protein Crl
D XDD1_3027 mraZ; Protein MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:xdo03021]
D XDD1_0305 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D XDD1_3641 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D XDD1_3640 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D XDD1_3804 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D XDD1_3417 rpoD; RNA polymerase sigma factor rpoD K03086 rpoD; RNA polymerase primary sigma factor
D XDD1_3158 rpoS; sigma S (sigma 38) factor of RNA polymerase, major sigma factor during stationary phase K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D XDD1_2816 rpoE; RNA polymerase sigma-E factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D XDD1_3575 rpoH; RNA polymerase sigma-32 factor K03089 rpoH; RNA polymerase sigma-32 factor
D XDD1_3528 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D XDD1_2298 fliA; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
D XDD1_3382 rapA; RNA polymerase-associated protein rapA K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
D XDD1_0477 nusA; Transcription elongation protein nusA K02600 nusA; transcription termination/antitermination protein NusA
D XDD1_0840 nusB; N utilization substance protein B homolog K03625 nusB; transcription antitermination protein NusB
D XDD1_3646 nusG; Transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
D XDD1_3508 sspA; Stringent starvation protein A K03599 sspA; stringent starvation protein A
D XDD1_3507 sspB; Stringent starvation protein B K03600 sspB; stringent starvation protein B
D XDD1_2815 rseA; Sigma-E factor negative regulatory protein K03597 rseA; sigma-E factor negative regulatory protein RseA
D XDD1_2814 rseB; Sigma-E factor regulatory protein rseB K03598 rseB; sigma-E factor negative regulatory protein RseB
D XDD1_2813 rseC; Sigma-E factor regulatory protein rseC K03803 rseC; sigma-E factor negative regulatory protein RseC
D XDD1_3107 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D XDD1_0469 greA; Transcription elongation factor greA K03624 greA; transcription elongation factor GreA
D XDD1_3864 greB; Transcription elongation factor greB K04760 greB; transcription elongation factor GreB
D XDD1_0345 rho; Transcription termination factor Rho K03628 rho; transcription termination factor Rho
D XDD1_3286 rof; Protein rof K19000 rof; Rho-binding antiterminator
C 03019 Messenger RNA biogenesis [BR:xdo03019]
D XDD1_2511 rne; Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D XDD1_3549 rng; Ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D XDD1_2810 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D XDD1_0428 rnr; Ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D XDD1_0401 orn; Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D XDD1_0342 rhlB; ATP-dependent RNA helicase rhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D XDD1_1414 rhlE; ATP-dependent RNA helicase rhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D XDD1_0484 deaD; Cold-shock DEAD box protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D XDD1_0381 recQ; ATP-dependent DNA helicase recQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D XDD1_3129 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D XDD1_0482 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D XDD1_0345 rho; Transcription termination factor Rho K03628 rho; transcription termination factor Rho
D XDD1_0182 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D XDD1_0760 dnaK; Chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK
D XDD1_0647 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D XDD1_0420 hfq; Protein hfq K03666 hfq; host factor-I protein
D XDD1_2431 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D XDD1_3105 pcnB; Poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D XDD1_3374 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D XDD1_1201 csrA; Carbon storage regulator homolog K03563 csrA; carbon storage regulator
D XDD1_0193 rraA; Regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A
D XDD1_0528 conserved protein of unknown function K09893 rraB; regulator of ribonuclease activity B
D XDD1_3531 conserved protein of unknown function K06958 rapZ; RNase adapter protein RapZ
D XDD1_2101 hrpA; ATP-dependent RNA helicase hrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D XDD1_3109 hrpB; ATP-dependent RNA helicase hrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
D XDD1_misc_RNA_4 SraH K18504 arcZ; small regulatory RNA ArcZ
D XDD1_misc_RNA_11 tke1 K15841 glmY; small regulatory RNA GlmY
D XDD1_misc_RNA_6 SraJ K18505 glmZ; small regulatory RNA GlmZ
D XDD1_misc_RNA_23 RyhB K18507 ryhB; small regulatory RNA RyhB
D XDD1_misc_RNA_22 RyhB K18507 ryhB; small regulatory RNA RyhB
D XDD1_misc_RNA_12 RybB K18508 rybB; small regulatory RNA RybB
D XDD1_misc_RNA_16 RprA K18518 rprA; small regulatory RNA RprA
D XDD1_misc_RNA_8 RyeE K18520 cyaR; small regulatory RNA CyaR
D XDD1_misc_RNA_5 GcvB K18521 gcvB; small regulatory RNA GcvB
D XDD1_misc_RNA_2 Spot_42 K18527 spf; small regulatory RNA Spot 42
C 03041 Spliceosome
C 03011 Ribosome [BR:xdo03011]
D XDD1_1574 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D XDD1_3306 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D XDD1_0286 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D XDD1_0304 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D XDD1_0297 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D XDD1_0431 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D XDD1_3650 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D XDD1_0294 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D XDD1_3509 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D XDD1_0279 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D XDD1_0303 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D XDD1_3651 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D XDD1_0302 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D XDD1_0293 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D XDD1_0481 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D XDD1_1207 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D XDD1_0289 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D XDD1_0433 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D XDD1_0284 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D XDD1_0755 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D XDD1_3415 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D XDD1_3644 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D XDD1_0283 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D XDD1_0280 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D XDD1_0281 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D XDD1_0292 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D XDD1_0295 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D XDD1_0434 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D XDD1_3643 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D XDD1_3645 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D XDD1_3642 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D XDD1_3510 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D XDD1_0290 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D XDD1_0299 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D XDD1_0287 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D XDD1_0306 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D XDD1_0296 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D XDD1_1210 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D XDD1_1775 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D XDD1_0461 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D XDD1_0285 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D XDD1_0282 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D XDD1_0291 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D XDD1_0462 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D XDD1_0124 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D XDD1_0288 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D XDD1_0298 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D XDD1_0200 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D XDD1_2507 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D XDD1_0125 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D XDD1_1774 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D XDD1_0301 rpmJ; 50S ribosomal protein L36 2 K02919 RP-L36; large subunit ribosomal protein L36
D XDD1_2540 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D XDD1_5s_rRNA_8 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D XDD1_5s_rRNA_1 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D XDD1_5s_rRNA_5 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D XDD1_5s_rRNA_7 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D XDD1_5s_rRNA_6 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D XDD1_5s_rRNA_2 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D XDD1_5s_rRNA_3 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D XDD1_5s_rRNA_4 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D XDD1_16s_rRNA_6 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XDD1_16s_rRNA_2 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XDD1_16s_rRNA_7 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XDD1_16s_rRNA_4 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XDD1_16s_rRNA_1 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XDD1_16s_rRNA_5 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XDD1_16s_rRNA_3 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XDD1_23s_rRNA_2 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XDD1_23s_rRNA_1 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XDD1_23s_rRNA_4 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XDD1_23s_rRNA_3 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XDD1_23s_rRNA_6 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XDD1_23s_rRNA_7 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XDD1_23s_rRNA_5 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:xdo03009]
D XDD1_2810 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D XDD1_0401 orn; Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D XDD1_2809 era; GTP-binding protein era homolog K03595 era; GTPase
D XDD1_0463 obg; GTPase obg K03979 obgE; GTPase [EC:3.6.5.-]
D XDD1_3107 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D XDD1_0477 nusA; Transcription elongation protein nusA K02600 nusA; transcription termination/antitermination protein NusA
D XDD1_0840 nusB; N utilization substance protein B homolog K03625 nusB; transcription antitermination protein NusB
D XDD1_3646 nusG; Transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
D XDD1_2538 rsuA; Ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D XDD1_3389 rsmA; Ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D XDD1_0310 rsmB; Ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D XDD1_0721 rsmC; Ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D XDD1_3579 rsmD; Ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D XDD1_1159 rsmE; Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D XDD1_0042 rsmG; Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D XDD1_3026 rsmH; Ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D XDD1_3490 rsmI; Ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D XDD1_0097 conserved protein of unknown function K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D XDD1_1726 rlmA; Ribosomal RNA large subunit methyltransferase A K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D XDD1_0430 rlmB; 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D XDD1_0471 rlmE; Ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D XDD1_1272 rlmH; Ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D XDD1_3681 conserved protein of unknown function K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D XDD1_1599 rlmL; Ribosomal RNA large subunit methyltransferase L K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D XDD1_3346 rlmM; Ribosomal RNA large subunit methyltransferase M K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D XDD1_2136 putative Ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D XDD1_2773 rlmN; Ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D XDD1_3125 rumA; 23S rRNA (uracil-5-)-methyltransferase rumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D XDD1_1539 rumB; 23S rRNA (uracil-5-)-methyltransferase rumB K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D XDD1_3383 rluA; Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D XDD1_2212 rluB; Ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D XDD1_2510 rluC; Ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D XDD1_1221 rluD; Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D XDD1_2474 rluE; Ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D XDD1_1234 yfiF; Uncharacterized tRNA/rRNA methyltransferase YfiF K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D XDD1_0723 rimI; Ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D XDD1_2027 rimJ; Ribosomal-protein-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D XDD1_1208 rimM; Ribosome maturation factor rimM K02860 rimM; 16S rRNA processing protein RimM
D XDD1_1568 conserved protein of unknown function K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D XDD1_3561 prmA; Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D XDD1_2631 yfcB; Uncharacterized adenine-specific methylase yfcB K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D XDD1_2482 conserved protein of unknown function K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D XDD1_2511 rne; Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D XDD1_3549 rng; Ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D XDD1_1156 putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D XDD1_0484 deaD; Cold-shock DEAD box protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D XDD1_2818 srmB; ATP-dependent RNA helicase srmB K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
D XDD1_0399 rsgA; putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D XDD1_2766 der; GTPase Der K03977 engA; GTPase
D XDD1_0422 hflX; GTP-binding protein hflX K03665 hflX; GTPase
D XDD1_0316 rimN; putative ribosome maturation factor rimN K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D XDD1_1060 protein of unknown function, putative SUA5 domain K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D XDD1_3805 spoT; Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D XDD1_0479 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D XDD1_0476 rimP; Ribosome maturation factor rimP K09748 rimP; ribosome maturation factor RimP
D XDD1_0944 putative RNA-binding protein K14761 rlbA; ribosome-associated protein
D XDD1_1273 conserved protein of unknown function K09710 ybeB; ribosome-associated protein
D XDD1_1291 putative enzyme K07042 ybeY; probable rRNA maturation factor
D XDD1_0470 yhbY; RNA-binding protein yhbY K07574 yhbY; RNA-binding protein
D XDD1_3539 yjgA; putative transport protein K09889 yjgA; ribosome-associated protein
D XDD1_3529 yhbH; putative sigma(54) modulation protein K05808 hpf; ribosome hibernation promoting factor
D XDD1_1219 raiA; Ribosome-associated inhibitor A K05809 raiA; ribosome-associated inhibitor A
D XDD1_1995 engD; GTP-dependent nucleic acid-binding protein engD K06942 ychF; ribosome-binding ATPase
D XDD1_2508 conserved protein of unknown function K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:xdo03016]
D XDD1_0514 rnz; Ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D XDD1_3411 cca; Multifunctional CCA protein [Includes: CCA-adding enzyme; 2'-nucleotidase; 2',3'-cyclic phosphodiesterase; Phosphatase] K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D XDD1_2698 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D XDD1_0238 putative Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D XDD1_3284 proS; Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D XDD1_0753 ileS; Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D XDD1_1277 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D XDD1_1445 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D XDD1_1300 glnS; glutamine tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D XDD1_2054 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D XDD1_2951 lysS; Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D XDD1_2061 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D XDD1_1200 alaS; Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D XDD1_3370 conserved protein of unknown function K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D XDD1_2598 Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D XDD1_1592 asnS; Asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D XDD1_0100 tRNA synthetase class II (G H P and S) K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D XDD1_1772 thrS; Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D XDD1_1561 serS; Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D XDD1_0942 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D XDD1_0667 valS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D XDD1_2769 hisS; Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D XDD1_1776 pheS; Phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D XDD1_1777 pheT; Phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D XDD1_1867 tyrS; Tyrosyl-tRNA synthetase 1 K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D XDD1_0065 trpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D XDD1_3812 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D XDD1_2495 hinT; HIT-like protein hinT K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D XDD1_3857 conserved protein of unknown function K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D XDD1_1136 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D XDD1_3283 conserved protein of unknown function K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D XDD1_2651 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D XDD1_0480 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D XDD1_3162 truD; tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D XDD1_2787 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D XDD1_0316 rimN; putative ribosome maturation factor rimN K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D XDD1_1060 protein of unknown function, putative SUA5 domain K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D XDD1_0419 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D XDD1_3971 mnmE; tRNA modification GTPase mnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D XDD1_0043 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D XDD1_2248 selD; Selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D XDD1_0439 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D XDD1_3974 rnpA; Ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D XDD1_misc_RNA_21 RNaseP_bact_a K01978 rnpB; M1 RNA
D XDD1_1860 rnt; Ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D XDD1_0115 rph; Ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D XDD1_2195 rnb; Exoribonuclease 2 K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D XDD1_2085 rnd; Ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D XDD1_0673 kptA; putative RNA 2'-phosphotransferase K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-]
D XDD1_0789 yjjK; Uncharacterized ABC transporter ATP-binding protein yjjK K06020 ettA; energy-dependent translational throttle protein EttA
D XDD1_3791 glyQ; Glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D XDD1_3790 glyS; Glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D XDD1_3106 gluQ; Glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D XDD1_0919 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase ybaK K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D XDD1_2801 tadA; TadA, tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D XDD1_3254 dusA; tRNA-dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D XDD1_3562 dusB; tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D XDD1_1415 dusC; tRNA-dihydrouridine synthase C K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
D XDD1_1293 miaB; (Dimethylallyl)adenosine tRNA methylthiotransferase miaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D XDD1_2058 cmoA; tRNA (cmo5U34)-methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D XDD1_2057 cmoB; tRNA (mo5U34)-methyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D XDD1_1582 smtA; Protein smtA K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
D XDD1_0263 trmA; tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D XDD1_1209 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D XDD1_1234 yfiF; Uncharacterized tRNA/rRNA methyltransferase YfiF K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D XDD1_2789 trmJ; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D XDD1_0159 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D XDD1_2817 tRNA (adenine-N(6)-)-methyltransferase K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D XDD1_3314 truC; tRNA pseudouridine synthase C K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D XDD1_3383 rluA; Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D XDD1_2476 mnmA; tRNA-specific 2-thiouridylase mnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D XDD1_1905 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D XDD1_3583 tusA; Sulfurtransferase tusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D XDD1_3652 tusB; Protein tusB K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D XDD1_3653 tusC; Protein tusC K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D XDD1_3654 tusD; Sulfurtransferase tusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D XDD1_1639 tusE; Sulfurtransferase tusE K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D XDD1_2785 iscA; Iron-binding protein iscA K13628 iscA; iron-sulfur cluster assembly protein
D XDD1_2959 tRNA-modifying protein ygfZ K06980 ygfZ; tRNA-modifying protein YgfZ
D XDD1_3157 miaE; tRNA-(ms[2]io[6]A)-hydroxylase K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69]
D XDD1_2639 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC [Includes: tRNA (mnm(5)s(2)U34)-methyltransferase; FAD-dependent cmnm(5) s(2)U34 oxidoreductase] K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D XDD1_0832 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D XDD1_0884 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D XDD1_3175 queD; 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D XDD1_3176 ygcF; 7-carboxy-7-deazaguanine synthase homolog K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D XDD1_3320 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D XDD1_2931 conserved protein of unknown function K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D XDD1_0833 tgt; Queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D XDD1_0860 thiI; tRNA sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D XDD1_3288 tilS; TilS, tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D XDD1_2412 conserved protein of unknown function K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D XDD1_2082 yeaZ; M22 peptidase homolog yeaZ K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D XDD1_3414 gcp; putative O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D XDD1_0416 conserved protein of unknown function K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D XDD1_3356 conserved protein of unknown function K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D XDD1_0428 rnr; Ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D XDD1_0482 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D XDD1_0525 VapC-like protein (VapBC toxin-antitoxin system) K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D XDD1_0577 VapC-like protein (VapBC toxin-antitoxin system) K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
C 03012 Translation factors [BR:xdo03012]
D XDD1_2197 conserved protein of unknown function K03113 EIF1; translation initiation factor 1
D XDD1_0478 infB; Translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D XDD1_1773 infC; Translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D XDD1_3660 yheS; Uncharacterized ABC transporter ATP-binding protein yheS K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D XDD1_0569 ABC transporter, duplicated ATPase domains K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D XDD1_3305 tsf; Elongation factor Ts K02357 tsf; elongation factor Ts
D XDD1_0277 tuf; Elongation factor Tu 2 K02358 tuf; elongation factor Tu
D XDD1_3648 tuf; Elongation factor Tu 2 K02358 tuf; elongation factor Tu
D XDD1_3649 fusA; Elongation factor G K02355 fusA; elongation factor G
D XDD1_3945 selB; Selenocysteine-specific elongation factor K03833 selB; selenocysteine-specific elongation factor
D XDD1_2004 prfA; Peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D XDD1_3303 frr; Ribosome-recycling factor K02838 frr; ribosome recycling factor
D XDD1_2005 hemK; Protein methyltransferase hemK K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D XDD1_3333 putative Similar to methylase and with protoporphyrinogen oxidase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D XDD1_1996 pth; Peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D XDD1_1551 infA; Translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D XDD1_0650 efp; Elongation factor P K02356 efp; elongation factor P
D XDD1_2529 Elongation factor P-like protein K02356 efp; elongation factor P
D XDD1_3589 conserved protein of unknown function K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D XDD1_0649 yjeK; Uncharacterized KamA family protein YjeK K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-]
D XDD1_2635 conserved protein of unknown function K09906 epmC; elongation factor P hydroxylase [EC:1.14.-.-]
D XDD1_2952 prfB; Peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D XDD1_0726 prfC; Peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
D XDD1_0308 conserved protein of unknown function K09890 arfA; alternative ribosome-rescue factor
C 03110 Chaperones and folding catalysts [BR:xdo03110]
D XDD1_1550 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D XDD1_1223 clpB; Chaperone protein ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D XDD1_0877 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D XDD1_0195 hslU; ATP-dependent protease ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D XDD1_0908 htpG; Chaperone protein htpG K04079 HSP90A; molecular chaperone HtpG
D XDD1_0760 dnaK; Chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK
D XDD1_2783 hscA; Chaperone protein hscA K04044 hscA; molecular chaperone HscA
D XDD1_1982 yegD; Uncharacterized chaperone protein yegD K04046 yegD; hypothetical chaperone protein
D XDD1_0647 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D XDD1_0759 dnaJ; Chaperone protein dnaJ K03686 dnaJ; molecular chaperone DnaJ
D XDD1_3384 djlA; DnaJ-like protein djlA K05801 djlA; DnaJ like chaperone protein
D XDD1_2784 hscB; Co-chaperone protein hscB K04082 hscB; molecular chaperone HscB
D XDD1_0080 hslO; 33 kDa chaperonin K04083 hslO; molecular chaperone Hsp33
D XDD1_2822 grpE; Protein grpE K03687 GRPE; molecular chaperone GrpE
D XDD1_0079 hslR; Heat shock protein 15 K04762 hslR; ribosome-associated heat shock protein Hsp15
D XDD1_0646 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES
D XDD1_0472 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D XDD1_0040 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D XDD1_2105 yraI; putative fimbrial chaperone yraI precursor K07346 fimC; fimbrial chaperone protein
D XDD1_0156 secB; Protein-export protein secB K03071 secB; preprotein translocase subunit SecB
D XDD1_0173 cpxP; putative Periplasmic protein; negative regulator of cpxR K06006 cpxP; periplasmic protein CpxP/Spy
D XDD1_1301 Chitobiase precursor (N-acetyl-beta-glucosaminidase) (Beta-N-acetylhexosaminidase) K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D XDD1_3670 rotA; Peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D XDD1_0940 ppiB; Peptidyl-prolyl cis-trans isomerase B K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D XDD1_0880 ppiD; Peptidyl-prolyl cis-trans isomerase D K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D XDD1_3656 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase fkpA K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D XDD1_0438 fklB; FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D XDD1_0751 fkbP; FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8]
D XDD1_3658 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase slyD K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D XDD1_3387 surA; Chaperone surA K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D XDD1_0343 trxA; Thioredoxin-1 K03671 TXN; thioredoxin
D XDD1_2163 trxA; Thioredoxin K03671 TXN; thioredoxin
D XDD1_0925 conserved protein of unknown function K05838 ybbN; putative thioredoxin
D XDD1_1535 grxA; Glutaredoxin-1 K03674 grxA; glutaredoxin 1
D XDD1_1859 grxD; Glutaredoxin-4 K07390 grxD; monothiol glutaredoxin
D XDD1_3673 dsbA; Thiol:disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D XDD1_2260 dsbB; Disulfide bond formation protein B K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D XDD1_2954 dsbC; Thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D XDD1_0642 dsbD; Thiol:disulfide interchange protein DsbD K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
C 04131 Membrane trafficking [BR:xdo04131]
D XDD1_2774 ndk; Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D XDD1_2254 gapA; Glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D XDD1_1360 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D XDD1_2074 pykA; Pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D XDD1_1850 pykF; Pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D XDD1_0908 htpG; Chaperone protein htpG K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system [BR:xdo04121]
C 03051 Proteasome [BR:xdo03051]
D XDD1_0908 htpG; Chaperone protein htpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:xdo03032]
D XDD1_0982 rnhA; Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D XDD1_0699 Cytosine-specific methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D XDD1_3610 hupA; DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha
D XDD1_0879 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D XDD1_1778 ihfA; Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D XDD1_1575 ihfB; Integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D XDD1_1377 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D XDD1_1067 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D XDD1_3232 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D XDD1_3416 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D XDD1_1079 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XDD1_1388 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XDD1_3226 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XDD1_3291 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D XDD1_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D XDD1_0666 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D XDD1_1275 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D XDD1_2497 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D XDD1_0983 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D XDD1_0904 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D XDD1_0722 holD; DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D XDD1_1738 holE; DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D XDD1_3292 rnhB; Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D XDD1_3672 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D XDD1_3802 ligB; DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D XDD1_2701 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D XDD1_2179 tus; DNA replication terminus site-binding protein K10748 tus; DNA replication terminus site-binding protein
D XDD1_0068 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D XDD1_1322 seqA; Protein seqA K03645 seqA; negative modulator of initiation of replication
D XDD1_2424 hda; DnaA-homolog protein hda K10763 hda; DnaA-homolog protein
D XDD1_2559 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D XDD1_0004 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D XDD1_3396 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D XDD1_3397 parE; DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D XDD1_2207 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D XDD1_1075 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
D XDD1_1384 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
D XDD1_2247 topB; DNA topoisomerase 3 K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:xdo03036]
D XDD1_0699 Cytosine-specific methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D XDD1_2810 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D XDD1_2238 hns; DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS
D XDD1_3610 hupA; DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha
D XDD1_0879 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D XDD1_1778 ihfA; Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D XDD1_1575 ihfB; Integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D XDD1_0784 rob; Right origin-binding protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D XDD1_3493 diaA; DnaA initiator-associating protein diaA K12961 diaA; DnaA initiator-associating protein
D XDD1_1637 hspQ; Heat shock protein hspQ K11940 hspQ; heat shock protein HspQ
D XDD1_1430 dps; DNA protection during starvation protein K04047 dps; starvation-inducible DNA-binding protein
D XDD1_3563 fis; DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D XDD1_0420 hfq; Protein hfq K03666 hfq; host factor-I protein
D XDD1_2985 iciA; Chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D XDD1_1557 lrp; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D XDD1_2541 conserved protein of unknown function K06899 ndpA; nucleoid-associated protein
D XDD1_1585 mukB; Chromosome partition protein mukB K03632 mukB; chromosome partition protein MukB
D XDD1_1584 mukE; Chromosome partition protein mukE K03804 mukE; chromosome partition protein MukE
D XDD1_1583 mukF; Chromosome partition protein mukF K03633 mukF; chromosome partition protein MukF
D XDD1_3014 ftsA; Cell division protein ftsA K03590 ftsA; cell division protein FtsA
D XDD1_3165 ftsB; Cell division protein ftsB homolog K05589 ftsB; cell division protein FtsB
D XDD1_3577 ftsE; Cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D XDD1_3024 ftsI; Peptidoglycan synthase ftsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D XDD1_1558 ftsK; DNA translocase ftsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D XDD1_3025 ftsL; Cell division protein ftsL K03586 ftsL; cell division protein FtsL
D XDD1_0197 ftsN; Cell division protein ftsN K03591 ftsN; cell division protein FtsN
D XDD1_3015 ftsQ; Cell division protein ftsQ K03589 ftsQ; cell division protein FtsQ
D XDD1_3019 ftsW; Cell division protein ftsW K03588 ftsW; cell division protein FtsW
D XDD1_3576 ftsX; Cell division protein ftsX K09811 ftsX; cell division transport system permease protein
D XDD1_3013 ftsZ; Cell division protein ftsZ K03531 ftsZ; cell division protein FtsZ
D XDD1_2702 zipA; Cell division protein ZipA homolog K03528 zipA; cell division protein ZipA
D XDD1_2980 zapA; Cell division protein ZapA K09888 zapA; cell division protein ZapA
D XDD1_0192 zapB; Cell division protein ZapB K09892 zapB; cell division protein ZapB
D XDD1_1597 conserved protein of unknown function K18657 zapC; cell division protein ZapC
D XDD1_3007 conserved protein of unknown function K18778 zapD; cell division protein ZapD
D XDD1_3511 conserved protein of unknown function K06916 zapE; cell division protein ZapE
D XDD1_0417 amiB; N-acetylmuramoyl-L-alanine amidase AmiB K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D XDD1_3358 amiC; N-acetylmuramoyl-L-alanine amidase AmiC K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D XDD1_0898 acrA; Acriflavine resistance protein A K03585 acrA; membrane fusion protein, multidrug efflux system
D XDD1_2088 minC; putative septum site-determining protein minC K03610 minC; septum site-determining protein MinC
D XDD1_2087 minD; Septum site-determining protein minD K03609 minD; septum site-determining protein MinD
D XDD1_2086 minE; Cell division topological specificity factor K03608 minE; cell division topological specificity factor
D XDD1_1609 Cell division inhibitor SulA K13053 sulA; cell division inhibitor SulA
D XDD1_0118 slmA; HTH-type protein slmA K05501 slmA; TetR/AcrR family transcriptional regulator
D XDD1_1322 seqA; Protein seqA K03645 seqA; negative modulator of initiation of replication
D XDD1_3553 mreB; Rod shape-determining protein mreB K03569 mreB; rod shape-determining protein MreB and related proteins
D XDD1_3552 mreC; Rod shape-determining protein mreC K03570 mreC; rod shape-determining protein MreC
D XDD1_3551 mreD; Rod shape-determining protein mreD K03571 mreD; rod shape-determining protein MreD
D XDD1_1270 mrdB; Rod shape-determining protein rodA K05837 rodA; rod shape determining protein RodA
D XDD1_2611 ParB domain protein nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D XDD1_3396 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D XDD1_3397 parE; DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D XDD1_0043 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D XDD1_0042 rsmG; Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D XDD1_0370 xerC; Tyrosine recombinase xerC K03733 xerC; integrase/recombinase XerC
D XDD1_1496 xerC; Tyrosine recombinase xerC 2 K04763 xerD; integrase/recombinase XerD
D XDD1_2955 xerD; Tyrosine recombinase xerD K04763 xerD; integrase/recombinase XerD
D XDD1_1819 xerC; Tyrosine recombinase xerC 2 K04763 xerD; integrase/recombinase XerD
D XDD1_1825 xerC; Tyrosine recombinase xerC 2 K04763 xerD; integrase/recombinase XerD
D XDD1_1833 xerC; Tyrosine recombinase xerC 2 K04763 xerD; integrase/recombinase XerD
D XDD1_2122 Integrase/recombinase K04763 xerD; integrase/recombinase XerD
D XDD1_1446 mrp; Protein mrp K03593 mrp; ATP-binding protein involved in chromosome partitioning
D XDD1_3154 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D XDD1_3153 Restriction modification system DNA specificity domain:Filamentation induced by cAMP protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D XDD1_3671 engB; putative GTP-binding protein engB K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:xdo03400]
D XDD1_1259 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D XDD1_2821 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D XDD1_1135 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D XDD1_2194 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D XDD1_3008 mutT; Mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D XDD1_2527 Nudix hydrolase 1 (AtNUDT1) (NADH pyrophosphatase) (DHNTP pyrophosphohydrolase) (Dihydroneopterin triphosphate pyrophosphohydrolase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D XDD1_0119 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D XDD1_2803 Similarities with the C-terminal region of 3-methyladenine DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D XDD1_3792 tag; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D XDD1_0132 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D XDD1_2246 xthA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D XDD1_2525 nfo; putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D XDD1_3612 nfi; Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D XDD1_2953 recJ; Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D XDD1_3802 ligB; DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D XDD1_2701 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D XDD1_3672 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D XDD1_3227 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D XDD1_1471 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
D XDD1_1675 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
D XDD1_0372 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D XDD1_3641 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D XDD1_3640 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D XDD1_0305 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D XDD1_3804 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D XDD1_2488 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D XDD1_3156 mutS; DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS
D XDD1_0418 mutL; DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL
D XDD1_3036 mutH; DNA mismatch repair protein mutH K03573 mutH; DNA mismatch repair protein MutH
D XDD1_2514 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D XDD1_2395 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D XDD1_0859 xseB; Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D XDD1_3291 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D XDD1_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D XDD1_0666 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D XDD1_1275 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D XDD1_2497 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D XDD1_0983 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D XDD1_0904 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D XDD1_0722 holD; DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D XDD1_1738 holE; DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D XDD1_1079 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XDD1_1388 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XDD1_3226 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XDD1_0068 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D XDD1_0704 vsr; Very short patch repair protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
D XDD1_3361 recB; Exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D XDD1_3363 recC; Exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D XDD1_3360 recD; Exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D XDD1_1198 recA; Protein recA K03553 recA; recombination protein RecA
D XDD1_2065 ruvA; Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
D XDD1_2066 ruvB; Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D XDD1_2064 ruvC; Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D XDD1_0199 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D XDD1_0432 priB; Primosomal replication protein n K02686 priB; primosomal replication protein N
D XDD1_0902 priC; Primosomal replication protein N'' K04067 priC; primosomal replication protein N''
D XDD1_1916 conserved protein of unknown function K04067 priC; primosomal replication protein N''
D XDD1_0821 sbcC; Nuclease sbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50
D XDD1_0822 sbcD; Nuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
D XDD1_0792 radA; DNA repair protein radA K04485 radA; DNA repair protein RadA/Sms
D XDD1_0003 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF
D XDD1_3806 recG; ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D XDD1_2808 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
D XDD1_0907 recR; Recombination protein recR K06187 recR; recombination protein RecR
D XDD1_2824 recN; DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N)
D XDD1_0812 rdgC; Recombination-associated protein rdgC K03554 rdgC; recombination associated protein RdgC
D XDD1_0592 conserved hypothetical protein (Uncharacterized protein ygbT) K15342 cas1; CRISP-associated protein Cas1
D XDD1_2539 conserved protein of unknown function K19789 radD; DNA repair protein RadD
D XDD1_2559 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D XDD1_0004 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D XDD1_2207 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D XDD1_3610 hupA; DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha
D XDD1_0879 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D XDD1_3563 fis; DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D XDD1_1778 ihfA; Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D XDD1_1575 ihfB; Integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D XDD1_0381 recQ; ATP-dependent DNA helicase recQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D XDD1_2238 hns; DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS
D XDD1_1187 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D XDD1_3257 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D XDD1_3381 polB; DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7]
D XDD1_0340 rep; ATP-dependent DNA helicase rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D XDD1_1635 helD; Helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4]
D XDD1_1422 dinG; putative ATP-dependent helicase dinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D XDD1_2081 yoaA; putative ATP-dependent helicase yoaA K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D XDD1_2557 nrdA; Ribonucleoside-diphosphate reductase 1 subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D XDD1_2556 nrdB; Ribonucleoside-diphosphate reductase 1 subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:xdo03029]
D XDD1_0478 infB; Translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D XDD1_1773 infC; Translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D XDD1_3305 tsf; Elongation factor Ts K02357 tsf; elongation factor Ts
D XDD1_0277 tuf; Elongation factor Tu 2 K02358 tuf; elongation factor Tu
D XDD1_3648 tuf; Elongation factor Tu 2 K02358 tuf; elongation factor Tu
D XDD1_3649 fusA; Elongation factor G K02355 fusA; elongation factor G
D XDD1_2809 era; GTP-binding protein era homolog K03595 era; GTPase
D XDD1_1867 tyrS; Tyrosyl-tRNA synthetase 1 K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D XDD1_1277 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D XDD1_2061 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D XDD1_2054 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D XDD1_1079 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XDD1_1388 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XDD1_3226 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XDD1_3298 yaeT; Outer membrane protein assembly factor yaeT K07277 SAM50; outer membrane protein insertion porin family
D XDD1_0760 dnaK; Chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK
D XDD1_2822 grpE; Protein grpE K03687 GRPE; molecular chaperone GrpE
D XDD1_0647 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D XDD1_0646 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES
D XDD1_0759 dnaJ; Chaperone protein dnaJ K03686 dnaJ; molecular chaperone DnaJ
D XDD1_2787 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D XDD1_2784 hscB; Co-chaperone protein hscB K04082 hscB; molecular chaperone HscB
D XDD1_1859 grxD; Glutaredoxin-4 K07390 grxD; monothiol glutaredoxin
D XDD1_1446 mrp; Protein mrp K03593 mrp; ATP-binding protein involved in chromosome partitioning
D XDD1_0864 cyoE; Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D XDD1_3972 oxaA; Inner membrane protein oxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D XDD1_0908 htpG; Chaperone protein htpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:xdo02000]
D XDD1_1577 msbA; Lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D XDD1_0887 mdlA; Multidrug resistance-like ATP-binding protein MdlA K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D XDD1_0888 mdlB; Multidrug resistance-like ATP-binding protein MdlB K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D XDD1_1310 RTX toxin ABC transporter K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB
D XDD1_1308 ABC transporter RTX toxin K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE
D XDD1_3326 aprD; Alkaline protease secretion ATP-binding protein AprD K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D XDD1_1553 cydC; ATP-binding/permease protein CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D XDD1_1554 aarD; Transport ATP-binding protein AarD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D XDD1_1547 macB; Macrolide export ATP-binding/permease protein MacB K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D XDD1_2293 ABC transporter ATP-binding protein K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein
D XDD1_2669 putative ATP-binding protein K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein
D XDD1_1600 uup; ABC transporter ATP-binding protein uup K15738 uup; ABC transport system ATP-binding/permease protein
D XDD1_0183 sbp; Sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D XDD1_2735 cysU; Sulfate transport system permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D XDD1_2734 cysW; Sulfate transport system permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D XDD1_2733 cysA; Sulfate/thiosulfate import ATP-binding protein CysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D XDD1_1365 modA; Molybdate-binding periplasmic protein K02020 modA; molybdate transport system substrate-binding protein
D XDD1_1366 modB; Molybdenum transport system permease protein modB K02018 modB; molybdate transport system permease protein
D XDD1_1367 modC; Molybdenum import ATP-binding protein ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D XDD1_1362 modF; putative molybdenum transport ATP-binding protein ModF K05776 modF; molybdate transport system ATP-binding protein
D XDD1_3065 Periplasmic ferric iron-binding protein AfuA K02012 afuA; iron(III) transport system substrate-binding protein
D XDD1_3051 afuC; ferric transport protein (ABC superfamily, atp_bind) K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D XDD1_3375 thiB; Thiamine-binding periplasmic protein K02064 thiB; thiamine transport system substrate-binding protein
D XDD1_3376 thiP; Thiamine transport system permease protein thiP K02063 thiP; thiamine transport system permease protein
D XDD1_3377 thiQ; Thiamine import ATP-binding protein ThiQ K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D XDD1_0693 potD; Spermidine/putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D XDD1_0694 potC; Spermidine/putrescine transport system permease protein potC K11070 potC; spermidine/putrescine transport system permease protein
D XDD1_0695 potB; Spermidine/putrescine transport system permease protein potB K11071 potB; spermidine/putrescine transport system permease protein
D XDD1_0696 potA; Spermidine/putrescine import ATP-binding protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D XDD1_2724 Putative spermidine/putrescine ABC transporter K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D XDD1_2725 putative binding-protein-dependent transport system membrane protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D XDD1_2726 putative binding-protein-dependent transport system membrane protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D XDD1_2727 potA; Spermidine/putrescine import ATP-binding protein PotA K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D XDD1_1254 proX; Glycine betaine-binding periplasmic protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D XDD1_1255 proW; Glycine betaine/L-proline transport system permease protein proW K02001 proW; glycine betaine/proline transport system permease protein
D XDD1_1256 proV; Glycine betaine/L-proline transport ATP-binding protein proV K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D XDD1_3635 malE; Maltose-binding periplasmic protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D XDD1_3634 malF; Maltose transport system permease protein malF K10109 malF; maltose/maltodextrin transport system permease protein
D XDD1_3633 malG; Maltose transport system permease protein malG K10110 malG; maltose/maltodextrin transport system permease protein
D XDD1_3636 malK; Maltose/maltodextrin import ATP-binding protein MalK K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D XDD1_0051 rbsB; D-ribose-binding periplasmic protein K10439 rbsB; ribose transport system substrate-binding protein
D XDD1_0050 rbsC; Ribose transport system permease protein rbsC K10440 rbsC; ribose transport system permease protein
D XDD1_0049 rbsA; Ribose import ATP-binding protein RbsA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D XDD1_3689 lsrB; Autoinducer 2-binding protein lsrB K10555 lsrB; AI-2 transport system substrate-binding protein
D XDD1_3687 lsrC; Autoinducer 2 import system permease protein lsrC K10556 lsrC; AI-2 transport system permease protein
D XDD1_3688 lsrD; Autoinducer 2 import system permease protein lsrD K10557 lsrD; AI-2 transport system permease protein
D XDD1_3686 lsrA; Autoinducer 2 import ATP-binding protein LsrA K10558 lsrA; AI-2 transport system ATP-binding protein
D XDD1_3519 mlaD; putative phospholipid ABC transporter-binding protein mlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D XDD1_3520 mlaE; putative phospholipid ABC transporter permease protein mlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D XDD1_3521 mlaF; putative phospholipid import ATP-binding protein mlaF K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D XDD1_3518 mlaC; putative phospholipid-binding protein mlaC K07323 mlaC; phospholipid transport system substrate-binding protein
D XDD1_3517 conserved protein of unknown function K07122 mlaB; phospholipid transport system transporter-binding protein
D XDD1_3856 pstS; Phosphate-binding protein pstS K02040 pstS; phosphate transport system substrate-binding protein
D XDD1_3855 pstC; Phosphate transport system permease protein pstC K02037 pstC; phosphate transport system permease protein
D XDD1_3854 pstA; Phosphate transport system permease protein pstA K02038 pstA; phosphate transport system permease protein
D XDD1_3853 pstB; Phosphate import ATP-binding protein pstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D XDD1_1542 artI; putative ABC transporter arginine-binding protein 2 K09997 artI; arginine transport system substrate-binding protein
D XDD1_1540 artM; Arginine ABC transporter permease protein ArtM K09998 artM; arginine transport system permease protein
D XDD1_1541 artQ; Arginine ABC transporter permease protein ArtQ K09999 artQ; arginine transport system permease protein
D XDD1_1543 artP; Arginine transport ATP-binding protein ArtP K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D XDD1_1281 gltI; Glutamate/aspartate periplasmic-binding protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D XDD1_1279 gltK; Glutamate/aspartate transport system permease protein gltK K10002 gltK; glutamate/aspartate transport system permease protein
D XDD1_1280 gltJ; Glutamate/aspartate transport system permease protein gltJ K10003 gltJ; glutamate/aspartate transport system permease protein
D XDD1_1278 gltL; Glutamate/aspartate transport ATP-binding protein GltL K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D XDD1_0519 putative amino-acid ABC transporter-binding protein HI_1080 K02424 tcyA; L-cystine transport system substrate-binding protein
D XDD1_0522 tcyA; L-cystine-binding protein tcyA K02424 tcyA; L-cystine transport system substrate-binding protein
D XDD1_0520 tcyB; L-cystine transport system permease protein tcyB K10009 tcyB; L-cystine transport system permease protein
D XDD1_0521 putative amino-acid ABC transporter ATP-binding protein HI_1078 K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D XDD1_3280 metQ; D-methionine-binding lipoprotein metQ K02073 metQ; D-methionine transport system substrate-binding protein
D XDD1_3279 metI; D-methionine transport system permease protein metI K02072 metI; D-methionine transport system permease protein
D XDD1_3278 metN; Methionine import ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein
D XDD1_3851 putative amino acid-binding protein (ABC superfamily, peri_bind) K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D XDD1_3849 putative high-affinity glutamine transport protein (ABC superfamily, membrane) K02029 ABC.PA.P; polar amino acid transport system permease protein
D XDD1_3850 putative glutamate/aspartate transport protein (ABC superfamily, membrane) K02029 ABC.PA.P; polar amino acid transport system permease protein
D XDD1_0815 oppA; OppA-like, oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XDD1_0816 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XDD1_0817 oppA; Periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D XDD1_0819 oppA; Periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D XDD1_2234 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XDD1_2235 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XDD1_2233 oppB; oligopeptide transport protein (ABC superfamily, membrane) K15581 oppB; oligopeptide transport system permease protein
D XDD1_2232 oppC; oligopeptide transport protein (ABC superfamily, membrane) K15582 oppC; oligopeptide transport system permease protein
D XDD1_2231 oppD; oligopeptide transport protein (ABC superfamily, atp_bind) K15583 oppD; oligopeptide transport system ATP-binding protein
D XDD1_2230 oppF; oligopeptide transport protein (ABC superfamily, atp_bind) K10823 oppF; oligopeptide transport system ATP-binding protein
D XDD1_3780 dppA; Periplasmic dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein
D XDD1_3779 dppB; Dipeptide transport system permease protein dppB K12369 dppB; dipeptide transport system permease protein
D XDD1_3778 dppC; Dipeptide transport system permease protein dppC K12370 dppC; dipeptide transport system permease protein
D XDD1_3777 dppD; Dipeptide transport ATP-binding protein DppD K12371 dppD; dipeptide transport system ATP-binding protein
D XDD1_3776 dppF; Dipeptide transport ATP-binding protein DppF K12372 dppF; dipeptide transport system ATP-binding protein
D XDD1_1874 sapA; Peptide transport periplasmic protein sapA K19226 sapA; cationic peptide transport system substrate-binding protein
D XDD1_1873 sapB; Peptide transport system permease protein sapB K19227 sapB; cationic peptide transport system permease protein
D XDD1_1872 sapC; Peptide transport system permease protein sapC K19228 sapC; cationic peptide transport system permease protein
D XDD1_1871 sapD; Peptide transport system ATP-binding protein sapD K19229 sapD; cationic peptide transport system ATP-binding protein
D XDD1_1870 sapF; Peptide transport system ATP-binding protein sapF K19230 sapF; cationic peptide transport system ATP-binding protein
D XDD1_1811 hmuT; Hemin-binding periplasmic protein hmuT K25132 hmuT; heme transport system substrate-binding protein
D XDD1_1810 hmuU; Hemin transport system permease protein hmuU K25133 hmuU; heme transport system permease protein
D XDD1_1809 hmuV; Hemin import ATP-binding protein HmuV K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5]
D XDD1_1237 Ferric enterobactin binding periplasmic protein FepB K25286 fagD; iron-siderophore transport system substrate-binding protein
D XDD1_1239 fepD; ferric enterobactin transport protein (ABC superfamily, membrane) K23186 fepD; iron-siderophore transport system permease protein
D XDD1_1240 Ferric enterobactin transport system permease protein FepG K23187 fepG; iron-siderophore transport system permease protein
D XDD1_1241 fepC; ferric enterobactin transport protein (ABC superfamily, atp_bind) K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D XDD1_1969 cbrA; Achromobactin-binding periplasmic protein K25109 sirA; iron-siderophore transport system substrate-binding protein
D XDD1_1970 cbrB; Achromobactin transport system permease protein CbrB K25110 sirB; iron-siderophore transport system permease protein
D XDD1_1971 cbrC; Achromobactin transport system permease protein CbrC K25111 sirC; iron-siderophore transport system permease protein
D XDD1_1972 cbrD; Achromobactin transport ATP-binding protein CbrD K25130 fecE; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D XDD1_1140 conserved exported protein of unknown function K25282 yclQ; iron-siderophore transport system substrate-binding protein
D XDD1_2520 conserved protein of unknown function K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D XDD1_2519 putative FecCD-family membrane transport protein (Inner membrane permease of iron/siderophore ABC transporter) K02015 ABC.FEV.P; iron complex transport system permease protein
D XDD1_2518 putative ferric enterobactin transport protein (ABC superfamily, atp_bind) K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D XDD1_3121 btuF; Vitamin B12-binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein
D XDD1_2071 znuA; High-affinity zinc uptake system protein znuA K09815 znuA; zinc transport system substrate-binding protein
D XDD1_2069 znuB; High-affinity zinc uptake system membrane protein znuB K09816 znuB; zinc transport system permease protein
D XDD1_2070 znuC; Zinc import ATP-binding protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D XDD1_1760 Periplasmic chelated iron-binding protein yfeA precursor K11604 sitA; manganese/iron transport system substrate-binding protein
D XDD1_1758 Chelated iron transport system membrane protein yfeC K11605 sitC; manganese/iron transport system permease protein
D XDD1_1757 Chelated iron transport system membrane protein yfeD K11606 sitD; manganese/iron transport system permease protein
D XDD1_1759 Chelated iron transport system membrane protein yfeB K11607 sitB; manganese/iron transport system ATP-binding protein
D XDD1_0664 lptF; Lipopolysaccharide export system permease protein lptF K07091 lptF; lipopolysaccharide export system permease protein
D XDD1_0663 lptG; Lipopolysaccharide export system permease protein lptG K11720 lptG; lipopolysaccharide export system permease protein
D XDD1_3527 lptB; Lipopolysaccharide export system ATP-binding protein LptB K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D XDD1_1408 ybhR; Inner membrane transport permease ybhR K25180 ybhR; drug efflux transport system permease protein
D XDD1_1409 ybhS; Inner membrane transport permease ybhS K25181 ybhS; drug efflux transport system permease protein
D XDD1_1410 ybhF; Uncharacterized ABC transporter ATP-binding protein ybhF K25182 ybhF; drug efflux transport system ATP-binding protein
D XDD1_1411 conserved exported protein of unknown function K25183 ybhG; membrane fusion protein YbhG
D XDD1_2485 lolE; Lipoprotein-releasing system transmembrane protein lolE K09808 lolC_E; lipoprotein-releasing system permease protein
D XDD1_2487 lolC; Lipoprotein-releasing system transmembrane protein lolC K09808 lolC_E; lipoprotein-releasing system permease protein
D XDD1_2486 lolD; Lipoprotein-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D XDD1_3576 ftsX; Cell division protein ftsX K09811 ftsX; cell division transport system permease protein
D XDD1_3577 ftsE; Cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D XDD1_0491 putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D XDD1_0492 Similar to permease protein of ABC transport system K01992 ABC-2.P; ABC-2 type transport system permease protein
D XDD1_3101 yadH; Inner membrane transport permease yadH K01992 ABC-2.P; ABC-2 type transport system permease protein
D XDD1_1423 conserved protein of unknown function K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D XDD1_3100 yadG; Uncharacterized ABC transporter ATP-binding protein yadG K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D XDD1_0929 ybbP; Uncharacterized ABC transporter permease ybbP K02004 ABC.CD.P; putative ABC transport system permease protein
D XDD1_2114 macB; Macrolide export ATP-binding/permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D XDD1_0928 ybbA; Uncharacterized ABC transporter ATP-binding protein ybbA K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D XDD1_2113 lolD; Lipoprotein-releasing system ATP-binding protein LolD K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D XDD1_0790 putative Phosphonate-transporting ATPase K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D XDD1_2184 conserved membrane protein of unknown function K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D XDD1_3132 Uncharacterized transporter HI_0608 K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D XDD1_1851 mdtK; Multidrug resistance protein mdtK K26939 norM; MATE family, multidrug efflux pump
D XDD1_0941 putative multidrug efflux protein, MatE family K26939 norM; MATE family, multidrug efflux pump
D XDD1_3052 putative Na+ driven multidrug efflux pump K26937 dinF; MATE family, multidrug efflux pump
D XDD1_0762 putative permease (MFS superfamily) K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D XDD1_0385 ydfJ; putative inner membrane metabolite transport protein ydfJ K08173 ydfJ; MFS transporter, MHS family, metabolite:H+ symporter
D XDD1_0930 conserved membrane protein of unknown function K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter
D XDD1_1931 dgoT; D-galactonate transporter K08194 dgoT; MFS transporter, ACS family, D-galactonate transporter
D XDD1_1018 hpaX; transporter HpaX K02511 hpaX; MFS transporter, ACS family, 4-hydroxyphenylacetate permease
D XDD1_0099 Permease of the major facilitator superfamily K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D XDD1_2791 hcaT; putative 3-phenylpropionic acid transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D XDD1_1722 uhpT; Hexose phosphate transport protein K07784 uhpT; MFS transporter, OPA family, hexose phosphate transport protein UhpT
D XDD1_3587 glpT; Glycerol-3-phosphate transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter
D XDD1_1725 uhpC; Regulatory protein uhpC K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D XDD1_3067 uhpC; Regulatory protein uhpC K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D XDD1_1196 lplT; Lysophospholipid transporter lplT K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter
D XDD1_0871 ampG; Protein AmpG K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D XDD1_2967 Drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D XDD1_2537 bcr; Bicyclomycin resistance protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D XDD1_0082 putative drug resistance transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D XDD1_0189 emrD; Multidrug resistance protein D K08154 emrD; MFS transporter, DHA1 family, 2-module integral membrane pump EmrD
D XDD1_2026 mdtH; Multidrug resistance protein mdtH K08162 mdtH; MFS transporter, DHA1 family, multidrug resistance protein
D XDD1_0772 putative transporter K18553 cmlR; MFS transporter, DHA1 family, chloramphenicol resistance protein
D XDD1_0403 putative Transmembrane efflux protein of the MFS type K18553 cmlR; MFS transporter, DHA1 family, chloramphenicol resistance protein
D XDD1_1913 ydhP; Inner membrane transport protein ydhP K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D XDD1_2459 ydhP; putative transmembrane efflux protein K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D XDD1_2895 putative efflux protein K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D XDD1_3929 General substrate transporter:Major facilitator superfamily K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D XDD1_1247 emrB; Multidrug resistance protein B K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D XDD1_0334 emrB; Multidrug resistance protein B K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D XDD1_3845 smvA; Methyl viologen resistance protein smvA K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
D XDD1_3341 putative transmembrane-transport protein K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
D XDD1_0233 membrane protein of unknown function K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D XDD1_0244 membrane protein of unknown function K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D XDD1_1186 conserved membrane protein of unknown function K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D XDD1_0526 Major facilitator superfamily (Mfs_1) transporter K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D XDD1_0916 fsr; Fosmidomycin resistance protein K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein
D XDD1_2177 ynfM; Inner membrane transport protein ynfM K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D XDD1_1213 Transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D XDD1_3476 putative transport protein K08219 UMF2; MFS transporter, UMF2 family, putative MFS family transporter protein
D XDD1_2706 ptsI; Phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D XDD1_3373 ptsP; Phosphoenolpyruvate-protein phosphotransferase ptsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D XDD1_0803 Phosphotransferase system HPr enzyme K02784 ptsH; phosphocarrier protein HPr
D XDD1_2705 ptsH; Phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D XDD1_3532 ptsO; Phosphocarrier protein NPr K08485 ptsO; phosphocarrier protein NPr
D XDD1_2707 crr; Glucose-specific phosphotransferase enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D XDD1_1299 PTS system N-acetylglucosamine-specific EIICBA component [Includes: N-acetylglucosamine permease IIC component; N-acetylglucosamine-specific phosphotransferase enzyme IIB component; N-acetylglucosamine-specific phosphotransferase enzyme IIA component] (fragment) K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D XDD1_0105 treB; PTS system trehalose-specific EIIBC component [Includes: Trehalose-specific phosphotransferase enzyme IIB component; Trehalose permease IIC component] K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D XDD1_3663 murP; PTS system N-acetylmuramic acid-specific EIIBC component [Includes: N-acetylmuramic acid-specific phosphotransferase enzyme IIB component; N-acetylmuramic acid permease IIC component] K11192 murP; N-acetylmuramic acid PTS system EIICB component [EC:2.7.1.192]
D XDD1_0805 conserved protein of unknown function K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D XDD1_0807 PTS system protein K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D XDD1_0806 celB; PTS system, IIC component K02761 celB; cellobiose PTS system EIIC component
D XDD1_1731 manX; PTS system mannose-specific EIIAB component [Includes: Mannose-specific phosphotransferase enzyme IIA component; Mannose-specific phosphotransferase enzyme IIB component] K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D XDD1_1730 manY; Mannose permease IIC component K02795 manY; mannose PTS system EIIC component
D XDD1_1729 manZ; Mannose permease IID component K02796 manZ; mannose PTS system EIID component
D XDD1_3530 ptsN; Nitrogen regulatory protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D XDD1_2897 aqpZ; Aquaporin Z K06188 aqpZ; aquaporin Z
D XDD1_0191 glpF; Glycerol uptake facilitator protein K02440 glpF; glycerol uptake facilitator
D XDD1_0890 amtB; Ammonia channel K03320 amt; ammonium transporter, Amt family
D XDD1_2888 putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D XDD1_2547 Glutathione S-transferase domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D XDD1_1531 yliJ; Uncharacterized GST-like protein yliJ K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D XDD1_3508 sspA; Stringent starvation protein A K03599 sspA; stringent starvation protein A
D XDD1_1567 focA; putative formate transporter 1 K06212 focA; formate transporter
D XDD1_0900 kefA; Potassium efflux system KefA K05802 mscK; potassium-dependent mechanosensitive channel
D XDD1_0397 yjeP; Uncharacterized mscS family protein yjeP K22051 mscM; miniconductance mechanosensitive channel
D XDD1_2989 mscS; Small-conductance mechanosensitive channel K03442 mscS; small conductance mechanosensitive channel
D XDD1_2434 putative divalent cation transport protein (divalent cation transporter) K06213 mgtE; magnesium transporter
D XDD1_2376 motA; Motility protein A K02556 motA; chemotaxis protein MotA
D XDD1_2375 motB; Motility protein B K02557 motB; chemotaxis protein MotB
D XDD1_0799 exbB; TonB complex protein K03561 exbB; biopolymer transport protein ExbB
D XDD1_0800 exbD; ExbD/TolR-family transport protein (TonB-complex protein) K03559 exbD; biopolymer transport protein ExbD
D XDD1_1351 tolQ; Protein tolQ K03562 tolQ; biopolymer transport protein TolQ
D XDD1_1352 tolR; Protein tolR K03560 tolR; biopolymer transport protein TolR
D XDD1_0373 corA; Magnesium transport protein CorA K03284 corA; magnesium transporter
D XDD1_1904 zntB; Zinc transport protein zntB K16074 zntB; zinc transporter
D XDD1_1261 crcB; Protein CrcB homolog K06199 crcB; fluoride exporter
D XDD1_1204 conserved membrane protein of unknown function K03699 tlyC; magnesium and cobalt exporter, CNNM family
D XDD1_1591 opnP; outer membrane protein, OpnP K09476 ompF; outer membrane pore protein F
D XDD1_0811 opnS; growth-phase-regulated outer membrane protein OpnS K09476 ompF; outer membrane pore protein F
D XDD1_3637 lamB; Maltoporin K02024 lamB; maltoporin
D XDD1_1607 ompA; Outer membrane protein A K03286 TC.OOP; OmpA-OmpF porin, OOP family
D XDD1_0639 ail; Attachment invasion locus protein K16078 ail; attachment invasion locus protein
D XDD1_2619 fadL; Long-chain fatty acid transport protein K06076 fadL; long-chain fatty acid transport protein
D XDD1_2104 lpfC; Outer membrane usher protein, lpfC(FimD) precursor K07347 fimD; outer membrane usher protein
D XDD1_2345 fimD; Outer membrane usher protein precursor K07347 fimD; outer membrane usher protein
D XDD1_2144 putative Extracellular serine protease precursor K12685 ssp; subtilase-type serine protease [EC:3.4.21.-]
D XDD1_1998 Outer membrane esterase(lipase) K12686 apeE; outer membrane lipase/esterase
D XDD1_1999 lip; Lipase 1 K12686 apeE; outer membrane lipase/esterase
D XDD1_1626 putative Outer membrane autotransporter barrel K19231 bmaC; fibronectin-binding autotransporter adhesin
D XDD1_1236 FhuE receptor (Outer-membrane receptor for ferric iron uptake) K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D XDD1_2517 irgA; Iron-regulated outer membrane virulence protein K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D XDD1_1180 tdhA; TonB-dependent heme receptor A K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D XDD1_3969 heme receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D XDD1_3594 conserved exported protein of unknown function K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D XDD1_1813 hemR; Hemin receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D XDD1_1961 acr; Acr protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D XDD1_2151 putative outer membrane copper receptor (OprC) K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D XDD1_3324 aprF; Alkaline protease secretion protein AprF K12538 hasF; outer membrane protein, type I secretion system
D XDD1_3401 tolC; Outer membrane protein tolC K12340 tolC; outer membrane protein
D XDD1_2115 putative outer membrane efflux protein K12340 tolC; outer membrane protein
D XDD1_3298 yaeT; Outer membrane protein assembly factor yaeT K07277 SAM50; outer membrane protein insertion porin family
D XDD1_2767 yfgL; Lipoprotein yfgL K17713 bamB; outer membrane protein assembly factor BamB
D XDD1_2415 nlpB; Lipoprotein 34 K07287 bamC; outer membrane protein assembly factor BamC
D XDD1_1220 conserved exported protein of unknown function K05807 bamD; outer membrane protein assembly factor BamD
D XDD1_2825 smpA; Small protein A K06186 bamE; outer membrane protein assembly factor BamE
D XDD1_0446 conserved exported protein of unknown function K07278 tamA; translocation and assembly module TamA
D XDD1_0447 conserved exported protein of unknown function K09800 tamB; translocation and assembly module TamB
D XDD1_3526 lptA; Lipopolysaccharide export system protein lptA K09774 lptA; lipopolysaccharide export system protein LptA
D XDD1_3525 lptC; Lipopolysaccharide export system protein lptC K11719 lptC; lipopolysaccharide export system protein LptC
D XDD1_3386 lptD; LPS-assembly protein lptD K04744 lptD; LPS-assembly protein
D XDD1_1276 lptE; LPS-assembly lipoprotein lptE K03643 lptE; LPS-assembly lipoprotein
D XDD1_1290 corC; Magnesium and cobalt efflux protein CorC K06189 corC; hemolysin (HlyC) family protein
D XDD1_1444 conserved membrane protein of unknown function K06518 cidA; holin-like protein
D XDD1_2521 lysP; Lysine-specific permease K11733 lysP; lysine-specific permease
D XDD1_2465 aroP; Aromatic amino acid transport protein AroP K11734 aroP; aromatic amino acid transport protein AroP
D XDD1_1662 cycA; D-serine/D-alanine/glycine transporter K11737 cycA; D-serine/D-alanine/glycine transporter
D XDD1_3177 proY; Proline-specific permease ProY K16234 hutT; histidine transporter
D XDD1_2630 proY; Proline-specific permease ProY K16234 hutT; histidine transporter
D XDD1_2107 ydgI; putative arginine/ornithine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D XDD1_2274 adiC; Arginine/agmatine antiporter K03759 adiC; arginine:agmatine antiporter
D XDD1_0181 fieF; Cation-efflux pump fieF K13283 fieF; ferrous-iron efflux pump FieF
D XDD1_3543 conserved membrane protein of unknown function K18305 mexG; transmembrane protein
D XDD1_3545 Uncharacterized transporter HI_0895 K18307 mexI; multidrug efflux pump
D XDD1_0897 acrB; Acriflavine resistance protein B K18138 acrB; multidrug efflux pump
D XDD1_2455 mdtB; Multidrug resistance protein mdtB K07788 mdtB; multidrug efflux pump
D XDD1_2456 mdtC; Multidrug resistance protein mdtC K07789 mdtC; multidrug efflux pump
D XDD1_1910 emrE; Multidrug transporter emrE K03297 emrE; small multidrug resistance pump
D XDD1_0651 sugE; Quaternary ammonium compound-resistance protein sugE K11741 sugE; quaternary ammonium compound-resistance protein SugE
D XDD1_2079 mdtI; Spermidine export protein mdtI K11742 mdtI; spermidine export protein MdtI
D XDD1_2078 mdtJ; Multidrug transport protein (SMR superfamily) K11743 mdtJ; spermidine export protein MdtJ
D XDD1_1324 Uncharacterized transporter in cobO 3'region K08978 TC.BAT1; bacterial/archaeal transporter family protein
D XDD1_2149 pecM; Protein pecM K15269 pecM; probable blue pigment (indigoidine) exporter
D XDD1_1431 rhtA; Inner membrane transporter rhtA K11939 rhtA; inner membrane transporter RhtA
D XDD1_0375 rarD; Protein rarD K05786 rarD; chloramphenicol-sensitive protein RarD
D XDD1_0214 conserved membrane protein of unknown function K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D XDD1_0608 gntU; Low-affinity gluconate transporter K06156 gntU; Gnt-I system low-affinity gluconate transporter
D XDD1_3205 Uncharacterized permease HI_1015 K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D XDD1_3204 Uncharacterized permease HI_1015 K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D XDD1_0643 dcuA; Anaerobic C4-dicarboxylate transporter dcuA K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D XDD1_1185 betT; High-affinity choline transport protein K02168 betT; choline/glycine/proline betaine transport protein
D XDD1_2582 betT; High-affinity choline transport protein K02168 betT; choline/glycine/proline betaine transport protein
D XDD1_3522 yrbG; Inner membrane protein yrbG K07301 yrbG; cation:H+ antiporter
D XDD1_0091 pitA; Low-affinity inorganic phosphate transporter 1 K16322 pit; low-affinity inorganic phosphate transporter
D XDD1_3560 panF; Sodium/pantothenate symporter K14392 panF; sodium/pantothenate symporter
D XDD1_2294 putP; Sodium/proline symporter K11928 putP; sodium/proline symporter
D XDD1_0058 yjcG; putative transporter of the sodium symport superfamily (SSS family); putative transmembrane protein K14393 actP; cation/acetate symporter
D XDD1_3134 dctA; C4-dicarboxylate transport protein K11103 dctA; aerobic C4-dicarboxylate transport protein
D XDD1_3482 sstT; Serine/threonine transporter sstT K07862 sstT; serine/threonine transporter
D XDD1_3808 gltS; Sodium/glutamate symport carrier protein K03312 gltS; glutamate:Na+ symporter, ESS family
D XDD1_0757 nhaA; Na(+)/H(+) antiporter nhaA K03313 nhaA; Na+:H+ antiporter, NhaA family
D XDD1_2259 nhaB; Na(+)/H(+) antiporter nhaB K03314 nhaB; Na+:H+ antiporter, NhaB family
D XDD1_0848 Uncharacterized Na(+)/H(+) antiporter HI_1107 K03315 nhaC; Na+:H+ antiporter, NhaC family
D XDD1_0531 putative Na+/H+ antiporter K18218 tet35; tetracycline resistance efflux pump
D XDD1_3217 yjcE; Uncharacterized Na(+)/H(+) exchanger yjcE K24163 nhaK; monovalent cation/hydrogen antiporter
D XDD1_0915 ybaL; Inner membrane protein ybaL K26735 KEA4_5_6; K+:H+ antiporter
D XDD1_1265 trkG; Trk system potassium uptake protein trkG K03498 trkH; trk/ktr system potassium uptake protein
D XDD1_3185 trkH; Trk system potassium uptake protein trkH K03498 trkH; trk/ktr system potassium uptake protein
D XDD1_0309 trkA; Trk system potassium uptake protein trkA K03499 trkA; trk/ktr system potassium uptake protein
D XDD1_1044 Permease K10974 codB; cytosine permease
D XDD1_2426 uraA; Uracil permease K02824 uraA; uracil permease
D XDD1_3809 xanP; Xanthine permease XanP K16345 xanP; xanthine permease XanP
D XDD1_3843 purP; putative adenine permease PurP K06901 pbuG; adenine/guanine/hypoxanthine permease
D XDD1_3218 putative permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D XDD1_2700 nupC; Nucleoside permease nupC K11535 nupC; nucleoside transport protein
D XDD1_2564 tyrP; Tyrosine-specific transport protein K03834 tyrP; tyrosine-specific transport protein
D XDD1_2528 mtr; Tryptophan-specific transport protein K03835 mtr; tryptophan-specific transport protein
D XDD1_1533 sdaC; Serine transporter K03837 sdaC; serine transporter
D XDD1_3057 yhaO; Inner membrane transport protein yhaO K26604 cyuP; cysteine uptake transport protein
D XDD1_2961 benE; Benzoate membrane transport protein K05782 benE; benzoate membrane transport protein
D XDD1_2008 ychM; putative sulfate transporter ychM K03321 TC.SULP; sulfate permease, SulP family
D XDD1_0354 wzxE; Protein wzxE K16693 wzxE; enterobacterial common antigen flippase
D XDD1_2052 mviN; Virulence factor mviN K03980 murJ; putative peptidoglycan lipid II flippase
D XDD1_2988 argO; Arginine exporter protein ArgO K06895 lysE; L-lysine exporter family protein LysE/ArgO
D XDD1_2138 Lysine exporter protein (LYSE/YGGA) K05835 rhtC; threonine efflux protein
D XDD1_1141 Similar to amino acid efflux protein K05835 rhtC; threonine efflux protein
D XDD1_1252 ygaZ; Inner membrane protein ygaZ K26605 azlC; branched chain amino acid efflux pump
D XDD1_1251 conserved membrane protein of unknown function K26606 azlD; branched chain amino acid efflux pump
D XDD1_2641 Uncharacterized 52.8 kDa protein in TAR-I ttuC' 3'region K07793 tctA; putative tricarboxylic transport membrane protein
D XDD1_2642 tctB; TctB protein K07794 tctB; putative tricarboxylic transport membrane protein
D XDD1_2643 conserved exported protein of unknown function K07795 tctC; putative tricarboxylic transport membrane protein
D XDD1_2421 perM; putative permease perM K03548 perM; putative permease
D XDD1_3584 yhhQ; Inner membrane protein yhhQ K09125 yhhQ; queuosine precursor transporter
D XDD1_3019 ftsW; Cell division protein ftsW K03588 ftsW; cell division protein FtsW
D XDD1_1727 conserved membrane protein of unknown function K23242 mntP; manganese efflux pump family protein
D XDD1_3061 yjiY; carbon starvation protein K23676 btsT; pyruvate/proton symporter
D XDD1_3970 conserved protein of unknown function K03832 tonB; periplasmic protein TonB
D XDD1_2226 tonB; energy transducer; uptake of iron, cyanocobalimin; sensitivity to phages, colicins K03832 tonB; periplasmic protein TonB
D XDD1_1355 pal; Peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D XDD1_1353 tolA; Protein tolA K03646 tolA; colicin import membrane protein
D XDD1_1354 tolB; Protein tolB K03641 tolB; TolB protein
D XDD1_1248 emrA; Multidrug resistance protein A K03543 emrA; membrane fusion protein, multidrug efflux system
D XDD1_0335 emrA; Multidrug resistance protein A K03543 emrA; membrane fusion protein, multidrug efflux system
D XDD1_3325 aprE; Alkaline protease secretion protein AprE K12537 hasE; membrane fusion protein, type I secretion system
D XDD1_1309 RtxD; RTX toxin ABC transporter protein RtxD K12532 rtxD; membrane fusion protein, RTX toxin transport system
D XDD1_3544 conserved protein of unknown function K18306 mexH; membrane fusion protein, multidrug efflux system
D XDD1_0898 acrA; Acriflavine resistance protein A K03585 acrA; membrane fusion protein, multidrug efflux system
D XDD1_1363 conserved exported protein of unknown function K25859 acrZ; accessory protein, multidrug efflux pump
D XDD1_2454 mdtA; Multidrug resistance protein mdtA K07799 mdtA; membrane fusion protein, multidrug efflux system
D XDD1_1546 macA; putative macrolide-specific efflux protein macA K13888 macA; membrane fusion protein, macrolide-specific efflux system
D XDD1_1358 pnuC; Nicotinamide riboside transporter pnuC K03811 pnuC; nicotinamide mononucleotide transporter
D XDD1_3866 feoA; Ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A
D XDD1_3867 feoB; Ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D XDD1_3868 feoC; Ferrous iron transport protein C K07490 feoC; ferrous iron transport protein C
D XDD1_0092 uspB; Universal stress protein B K06144 uspB; universal stress protein B
D XDD1_2380 mgtC; Protein mgtC K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D XDD1_1744 yebZ; putative resistance protein K07245 pcoD; copper resistance protein D
D XDD1_1743 yobA; Protein yobA K07156 copC; copper resistance protein C
C 02044 Secretion system [BR:xdo02044]
D XDD1_3401 tolC; Outer membrane protein tolC K12340 tolC; outer membrane protein
D XDD1_2115 putative outer membrane efflux protein K12340 tolC; outer membrane protein
D XDD1_1310 RTX toxin ABC transporter K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB
D XDD1_1308 ABC transporter RTX toxin K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE
D XDD1_1309 RtxD; RTX toxin ABC transporter protein RtxD K12532 rtxD; membrane fusion protein, RTX toxin transport system
D XDD1_3326 aprD; Alkaline protease secretion ATP-binding protein AprD K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D XDD1_3325 aprE; Alkaline protease secretion protein AprE K12537 hasE; membrane fusion protein, type I secretion system
D XDD1_3324 aprF; Alkaline protease secretion protein AprF K12538 hasF; outer membrane protein, type I secretion system
D XDD1_1161 Bifunctional prepilin peptidase: leader peptidase; methyl transferase (General Secretory Pathway) K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D XDD1_2772 Complete genome; segment 5/17 K02656 pilF; type IV pilus assembly protein PilF
D XDD1_1155 conserved protein of unknown function K02669 pilT; twitching motility protein PilT
D XDD1_3367 ppdA; Prepilin peptidase-dependent protein A, possibly in type IV pilin biogenesis K02679 ppdA; prepilin peptidase dependent protein A
D XDD1_3366 ppdB; Prepilin peptidase-dependent protein B, possibly in type IV pilin biogenesis K02680 ppdB; prepilin peptidase dependent protein B
D XDD1_3364 Prepilin peptidase dependent protein C K02681 ppdC; prepilin peptidase dependent protein C
D XDD1_3003 ppdD; Prepilin peptidase-dependent protein D K02682 ppdD; prepilin peptidase dependent protein D
D XDD1_3004 hofB; Protein transport protein hofB K02504 hofB; protein transport protein HofB
D XDD1_3005 hofC; Component in type IV pilin biogenesis, transmembrane protein K02505 hofC; protein transport protein HofC
D XDD1_0075 conserved protein of unknown function K12288 hofM; pilus assembly protein HofM
D XDD1_0074 conserved exported protein of unknown function K12289 hofN; pilus assembly protein HofN
D XDD1_0073 conserved protein of unknown function K12290 hofO; pilus assembly protein HofO
D XDD1_0072 putative transport protein, possibly in biosynthesis of type IV pilin K02507 hofQ; protein transport protein HofQ
D XDD1_1152 conserved membrane protein of unknown function K02221 yggT; YggT family protein
D XDD1_0882 conserved exported protein of unknown function K02237 comEA; competence protein ComEA
D XDD1_1576 ycaI; putative recombination protein with metallo-hydrolase domain K02238 comEC; competence protein ComEC
D XDD1_2352 flhA; Flagellar biosynthesis protein flhA K02400 flhA; flagellar biosynthesis protein FlhA
D XDD1_2353 flhB; Flagellar biosynthetic protein flhB K02401 flhB; flagellar biosynthesis protein FlhB
D XDD1_2310 fliF; Flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF
D XDD1_2312 fliH; Flagellar assembly protein fliH K02411 fliH; flagellar assembly protein FliH
D XDD1_2313 fliI; Flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D XDD1_2319 fliN; Flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D XDD1_2320 mopB; Protein mopB K02418 fliO; flagellar protein FliO/FliZ
D XDD1_2321 fliP; Flagellar biosynthetic protein fliP K02419 fliP; flagellar biosynthesis protein FliP
D XDD1_2322 fliQ; Flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D XDD1_2323 fliR; Flagellar biosynthetic protein fliR K02421 fliR; flagellar biosynthesis protein FliR
D XDD1_1375 putative chromosome partitioning related protein SOJ-like protein (ParA) K12055 K12055; chromosome partitioning related protein ParA
D XDD1_1065 putative chromosome partitioning related protein SOJ-like protein K12055 K12055; chromosome partitioning related protein ParA
D XDD1_1397 putative plasmid transfer protein (TraD) K12071 traD; conjugal transfer pilus assembly protein TraD
D XDD1_1085 putative plasmid transfer protein K12071 traD; conjugal transfer pilus assembly protein TraD
D XDD1_2954 dsbC; Thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D XDD1_2144 putative Extracellular serine protease precursor K12685 ssp; subtilase-type serine protease [EC:3.4.21.-]
D XDD1_1998 Outer membrane esterase(lipase) K12686 apeE; outer membrane lipase/esterase
D XDD1_1999 lip; Lipase 1 K12686 apeE; outer membrane lipase/esterase
D XDD1_3767 xhlB; XhlB, XhlA hemolysin secretion/activation protein (TpsB) K11017 shlB; hemolysin activation/secretion protein
D XDD1_3768 xhlA; XhlA, Cell surface associated hemolysin (TpsA) K11016 shlA; hemolysin
D XDD1_3720 protein of unknown function K11891 impL; type VI secretion system protein ImpL
D XDD1_3752 Conserved hypothetical protein (probable component of SST VI cluster) K11891 impL; type VI secretion system protein ImpL
D XDD1_2039 Conserved hypothetical protein (ImcF-like domain protein precursor of SST VI cluster) K11891 impL; type VI secretion system protein ImpL
D XDD1_1893 Conserved hypothetical protein (ImcF domain protein precursor of SST VI cluster) K11891 impL; type VI secretion system protein ImpL
D XDD1_3705 conserved protein of unknown function K11891 impL; type VI secretion system protein ImpL
D XDD1_3757 conserved hypothetical protein (probable component of SST VI cluster) K11892 impK; type VI secretion system protein ImpK
D XDD1_2040 Conserved hypothetical protein with OmpA/MotB domains (probable component of SST VI cluster) K11892 impK; type VI secretion system protein ImpK
D XDD1_1894 Conserved hypothetical protein with OmpA/MotB domains (probable component of SST VI cluster) K11892 impK; type VI secretion system protein ImpK
D XDD1_3758 conserved hypothetical protein (probable component of SST VI cluster) K11893 impJ; type VI secretion system protein ImpJ
D XDD1_2041 conserved hypothetical protein, probable component of SST VI cluster K11893 impJ; type VI secretion system protein ImpJ
D XDD1_1895 conserved hypothetical protein, probable component of SST VI cluster K11893 impJ; type VI secretion system protein ImpJ
D XDD1_3761 conserved hypothetical protein (probable component of the SST VI cluster) K11895 impH; type VI secretion system protein ImpH
D XDD1_2031 conserved hypothetical protein (probable component of SST VI cluster) K11895 impH; type VI secretion system protein ImpH
D XDD1_1885 conserved protein of unknown function (probable component of SST VI) K11895 impH; type VI secretion system protein ImpH
D XDD1_3762 conserved hypothetical protein (probable component of the SST VI cluster) K11896 impG; type VI secretion system protein ImpG
D XDD1_2032 conserved hypothetical protein (probable component of SST VI cluster) K11896 impG; type VI secretion system protein ImpG
D XDD1_1886 conserved hypothetical protein (probable component of SST VI cluster) K11896 impG; type VI secretion system protein ImpG
D XDD1_2033 conserved hypothetical protein (probable component of SST VI cluster) K11897 impF; type VI secretion system protein ImpF
D XDD1_1887 conserved protein of unknown function (probable component of SST VI) K11897 impF; type VI secretion system protein ImpF
D XDD1_3764 conserved hypothetical protein (probable component of the SST VI cluster) K11900 impC; type VI secretion system protein ImpC
D XDD1_2036 conserved hypothetical protein (probable component of SST VI cluster) K11900 impC; type VI secretion system protein ImpC
D XDD1_1890 conserved hypothetical protein (probable component of SST VI cluster) K11900 impC; type VI secretion system protein ImpC
D XDD1_3765 conserved hypothetical protein (probable component of the SST VI cluster) K11901 impB; type VI secretion system protein ImpB
D XDD1_2037 conserved hypothetical protein (probable component of SST VI cluster) K11901 impB; type VI secretion system protein ImpB
D XDD1_1891 conserved hypothetical protein (probable component of SST VI cluster) K11901 impB; type VI secretion system protein ImpB
D XDD1_2038 Conserved hypothetical protein with ImpA domain(probable component of SST VI cluster) K11902 impA; type VI secretion system protein ImpA
D XDD1_1892 Conserved hypothetical protein with ImpA domain (probable component of SST VI cluster) K11902 impA; type VI secretion system protein ImpA
D XDD1_3766 hcp; Hemolysin-coregulated protein Hcp(probable secreted cytotoxin of SST VI component) K11903 hcp; type VI secretion system secreted protein Hcp
D XDD1_2035 putative secretion system effector of SST VI cluster (Hcp family) K11903 hcp; type VI secretion system secreted protein Hcp
D XDD1_1889 putative secretion system effector of SST VI cluster (Hcp family) K11903 hcp; type VI secretion system secreted protein Hcp
D XDD1_0972 VgrG K11904 vgrG; type VI secretion system secreted protein VgrG
D XDD1_1114 putative VrgG protein K11904 vgrG; type VI secretion system secreted protein VgrG
D XDD1_1902 Conserved hypothetical protein (Vgr family protein, that may be secreted via SST VI system) K11904 vgrG; type VI secretion system secreted protein VgrG
D XDD1_2049 Conserved hypothetical protein (Vgr family protein, that may be secreted via SST VI system) K11904 vgrG; type VI secretion system secreted protein VgrG
D XDD1_3713 VgrG K11904 vgrG; type VI secretion system secreted protein VgrG
D XDD1_3736 VgrG K11904 vgrG; type VI secretion system secreted protein VgrG
D XDD1_3747 Lysozyme (fragment) K11904 vgrG; type VI secretion system secreted protein VgrG
D XDD1_2359 putative Vrg family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D XDD1_3763 conserved hypothetical protein (probable component of the SST VI cluster; lysozyme-related protein) K11905 K11905; type VI secretion system protein
D XDD1_1896 conserved exported protein of unknown function (probable component of SST VI cluster) K11906 vasD; type VI secretion system protein VasD
D XDD1_3759 conserved hypothetical protein (probable lipoprotein of SST VI cluster) K11906 vasD; type VI secretion system protein VasD
D XDD1_2042 conserved exported protein of unknown function (probable gene of SST VI cluster) K11906 vasD; type VI secretion system protein VasD
D XDD1_3756 putative ClpA/B-type chaperone (Putative ATPase with chaperone activity; probable component of SST VI cluster) K11907 vasG; type VI secretion system protein VasG
D XDD1_2030 putative ClpA/B-type chaperone (Putative ATPase with chaperone activity; probable component of SST VI cluster) K11907 vasG; type VI secretion system protein VasG
D XDD1_1884 putative ClpA/B-type chaperone (Putative ATPase with chaperone activity; probable component of SST VI cluster) K11907 vasG; type VI secretion system protein VasG
D XDD1_3753 Conserved hypothetical protein with ImpA domain(probable component of SST VI cluster) K11910 vasJ; type VI secretion system protein VasJ
D XDD1_3751 Conserved Hypothetical protein with ImpA domain (probable component of SST VI cluster) K11911 vasL; type VI secretion system protein VasL
D XDD1_3760 Conserved hypothetical protein with FHA domain (probable component of SST VI cluster) K11894 impI; type VI secretion system protein ImpI
D XDD1_3754 conserved hypothetical protein (probable component of SST VI cluster) K11909 vasI; type VI secretion system protein VasI
D XDD1_2106 putative fimbrial-like adhesin protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D XDD1_2105 yraI; putative fimbrial chaperone yraI precursor K07346 fimC; fimbrial chaperone protein
D XDD1_2104 lpfC; Outer membrane usher protein, lpfC(FimD) precursor K07347 fimD; outer membrane usher protein
D XDD1_2345 fimD; Outer membrane usher protein precursor K07347 fimD; outer membrane usher protein
D XDD1_0736 mrxC; Outer membrane usher protein, MrxC K12518 papC; outer membrane usher protein PapC
D XDD1_0737 mrxD; Periplasmic fimbrial chaperone precursor, MrxD K12519 papD; chaperone protein PapD
D XDD1_3009 secA; Protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D XDD1_0156 secB; Protein-export protein secB K03071 secB; preprotein translocase subunit SecB
D XDD1_0835 secD; Protein-export membrane protein secD K03072 secD; preprotein translocase subunit SecD
D XDD1_3647 secE; Preprotein translocase subunit secE K03073 secE; preprotein translocase subunit SecE
D XDD1_0836 secF; Protein-export membrane protein secF K03074 secF; preprotein translocase subunit SecF
D XDD1_0475 secG; Protein-export membrane protein secG K03075 secG; preprotein translocase subunit SecG
D XDD1_3010 secM; Secretion monitor K13301 secM; secretion monitor
D XDD1_0300 secY; Preprotein translocase subunit secY K03076 secY; preprotein translocase subunit SecY
D XDD1_1206 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D XDD1_3578 ftsY; Cell division protein ftsY K03110 ftsY; fused signal recognition particle receptor
D XDD1_0834 conserved exported protein of unknown function K03210 yajC; preprotein translocase subunit YajC
D XDD1_3972 oxaA; Inner membrane protein oxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D XDD1_3196 tatA; Sec-independent protein translocase protein tatA/E homolog K03116 tatA; sec-independent protein translocase protein TatA
D XDD1_3195 tatB; Involved in membrane translocation of periplasmic proteins that preserves folded structures and bound ligands K03117 tatB; sec-independent protein translocase protein TatB
D XDD1_3194 tatC; Sec-independent protein translocase protein tatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:xdo02042]
D XDD1_1049 Mcf2 K19615 fitD; insecticidal toxin
D XDD1_1313 putative RTX toxin RtxA K10953 rtxA; RTX toxin RtxA
D XDD1_1204 conserved membrane protein of unknown function K03699 tlyC; magnesium and cobalt exporter, CNNM family
D XDD1_3768 xhlA; XhlA, Cell surface associated hemolysin (TpsA) K11016 shlA; hemolysin
D XDD1_3767 xhlB; XhlB, XhlA hemolysin secretion/activation protein (TpsB) K11017 shlB; hemolysin activation/secretion protein
D XDD1_3773 plcN; Non-hemolytic phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
C 02022 Two-component system [BR:xdo02022]
D XDD1_0825 phoR; Phosphate regulon sensor protein phoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D XDD1_0824 phoB; Phosphate regulon transcriptional regulatory protein phoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D XDD1_2481 phoQ; sensory histidine kinase in two-component regulatory system with PhoP, regulates gene expression at low [Mg+], senses Mg+ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D XDD1_2480 phoP; response regulator in two-component regulatory system with PhoQ, regulates gene expression at low [Mg+] (OmpR family) K07660 phoP; two-component system, OmpR family, response regulator PhoP
D XDD1_3862 EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D XDD1_3863 ompR; Transcriptional regulatory protein ompR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D XDD1_0171 cpxA; sensory histidine kinase in two-component regulatory system with CpxR, regulates genes involved in folding/degrading periplasmic proteins, senses changes in the cell envelope K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D XDD1_0172 cpxR; response regulator in two-component regulatory system with CpxA, regulates genes involved in folding/degrading periplasmic proteins (OmpR family) K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D XDD1_2457 baeS; Signal transduction histidine-protein kinase BaeS K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D XDD1_2458 baeR; Transcriptional regulatory protein BaeR K07664 baeR; two-component system, OmpR family, response regulator BaeR
D XDD1_1326 kdpD; Sensor protein kdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D XDD1_3503 arcB; Aerobic respiration control sensor protein ArcB K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D XDD1_0781 arcA; Aerobic respiration control protein ArcA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D XDD1_2646 Two-component sensor kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D XDD1_2645 tctD; Transcriptional regulatory protein tctD K07774 tctD; two-component system, OmpR family, response regulator TctD
D XDD1_2408 narP; Nitrate/nitrite response regulator protein narP K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D XDD1_1724 uhpB; Sensor protein uhpB K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D XDD1_1723 uhpA; Transcriptional regulatory protein uhpA K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D XDD1_3068 uhpB; Two-component sensor histidine kinase uhpb, phosphorylates uhpa K20263 fusK; two-component system, NarL family, sensor histidine kinase FusK [EC:2.7.13.3]
D XDD1_3069 uhpA; Transcriptional regulatory protein uhpA K20264 fusR; two-component system, NarL family, response regulator FusR
D XDD1_2560 rcsC; Sensor kinase protein RcsC K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D XDD1_2562 rcsD; putative sensory histidine kinase (Phosphotransfer intermediate) associated with the RcsBC two-component regulatory system K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D XDD1_2561 rcsB; Capsular synthesis regulator component B K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D XDD1_3124 Sensor protein BarA K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D XDD1_1674 uvrY; Response regulator uvrY K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D XDD1_0488 yehU; YehU, sensory kinase in two-component system with YehT K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D XDD1_0487 yehT; YehT, response regulator in two-component system with YehU K02477 K02477; two-component system, LytTR family, response regulator
D XDD1_3834 ntrB; Nitrogen regulation protein NR(II) K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D XDD1_3835 glnG; Nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D XDD1_2798 yfhK; putative sensor-like histidine kinase yfhK K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D XDD1_2796 conserved protein of unknown function K07715 glrR; two-component system, NtrC family, response regulator GlrR
D XDD1_2374 cheA; Chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D XDD1_2368 cheY; Chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D XDD1_2369 cheB; Chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
C 02035 Bacterial motility proteins [BR:xdo02035]
D XDD1_2374 cheA; Chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D XDD1_2373 cheW; Chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D XDD1_2370 cheR; Chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D XDD1_2369 cheB; Chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D XDD1_2368 cheY; Chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D XDD1_2367 cheZ; Protein phosphatase CheZ K03414 cheZ; chemotaxis protein CheZ
D XDD1_2372 tse; Methyl-accepting chemotaxis serine transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D XDD1_2371 tsr; Methyl-accepting chemotaxis protein I K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor
D XDD1_2312 fliH; Flagellar assembly protein fliH K02411 fliH; flagellar assembly protein FliH
D XDD1_2313 fliI; Flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D XDD1_2314 fliJ; Flagellar fliJ protein K02413 fliJ; flagellar protein FliJ
D XDD1_2320 mopB; Protein mopB K02418 fliO; flagellar protein FliO/FliZ
D XDD1_2321 fliP; Flagellar biosynthetic protein fliP K02419 fliP; flagellar biosynthesis protein FliP
D XDD1_2322 fliQ; Flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D XDD1_2323 fliR; Flagellar biosynthetic protein fliR K02421 fliR; flagellar biosynthesis protein FliR
D XDD1_2352 flhA; Flagellar biosynthesis protein flhA K02400 flhA; flagellar biosynthesis protein FlhA
D XDD1_2353 flhB; Flagellar biosynthetic protein flhB K02401 flhB; flagellar biosynthesis protein FlhB
D XDD1_2311 fliG; Flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D XDD1_2318 fliM; Flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D XDD1_2319 fliN; Flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D XDD1_2310 fliF; Flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF
D XDD1_2332 flgI; Flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D XDD1_2340 flgA; Flagella basal body P-ring formation protein flgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D XDD1_2333 flgH; Flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D XDD1_2317 fliL; Flagellar protein FliL K02415 fliL; flagellar protein FliL
D XDD1_2308 fliE; Flagellar hook-basal body complex protein fliE K02408 fliE; flagellar hook-basal body complex protein FliE
D XDD1_2315 Flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D XDD1_2339 flgB; Flagellar basal-body rod protein flgB K02387 flgB; flagellar basal-body rod protein FlgB
D XDD1_2338 flgC; Flagellar basal-body rod protein flgC K02388 flgC; flagellar basal-body rod protein FlgC
D XDD1_2337 flgD; Basal-body rod modification protein flgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D XDD1_2335 flgF; Flagellar basal-body rod protein flgF K02391 flgF; flagellar basal-body rod protein FlgF
D XDD1_2334 flgG; Flagellar basal-body rod protein flgG K02392 flgG; flagellar basal-body rod protein FlgG
D XDD1_2331 flgJ; Peptidoglycan hydrolase flgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D XDD1_2336 flgE; flagellar biosynthesis; hook protein K02390 flgE; flagellar hook protein FlgE
D XDD1_2330 flgK; Flagellar hook-associated protein 1 K02396 flgK; flagellar hook-associated protein 1
D XDD1_2329 flgL; Flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D XDD1_2342 flgN; Flagella synthesis protein flgN K02399 flgN; flagellar biosynthesis protein FlgN
D XDD1_2299 fliC; Flagellin K02406 fliC; flagellin
D XDD1_2301 fliD; Flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2
D XDD1_2302 fliS; Flagellar protein fliS K02422 fliS; flagellar secretion chaperone FliS
D XDD1_2303 fliT; Flagellar protein fliT K02423 fliT; flagellar protein FliT
D XDD1_2378 flhD; Transcriptional activator FlhD K02403 flhD; flagellar transcriptional activator FlhD
D XDD1_2377 flhC; Flagellar transcriptional activator flhC K02402 flhC; flagellar transcriptional activator FlhC
D XDD1_2298 fliA; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
D XDD1_2376 motA; Motility protein A K02556 motA; chemotaxis protein MotA
D XDD1_2375 motB; Motility protein B K02557 motB; chemotaxis protein MotB
D XDD1_0519 putative amino-acid ABC transporter-binding protein HI_1080 K02424 tcyA; L-cystine transport system substrate-binding protein
D XDD1_0522 tcyA; L-cystine-binding protein tcyA K02424 tcyA; L-cystine transport system substrate-binding protein
D XDD1_2297 fliZ; Protein fliZ K02425 fliZ; regulator of sigma S factor FliZ
D XDD1_2341 flgM; Negative regulator of flagellin synthesis K02398 flgM; negative regulator of flagellin synthesis FlgM
D XDD1_1155 conserved protein of unknown function K02669 pilT; twitching motility protein PilT
D XDD1_2772 Complete genome; segment 5/17 K02656 pilF; type IV pilus assembly protein PilF
D XDD1_2106 putative fimbrial-like adhesin protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D XDD1_2105 yraI; putative fimbrial chaperone yraI precursor K07346 fimC; fimbrial chaperone protein
D XDD1_2104 lpfC; Outer membrane usher protein, lpfC(FimD) precursor K07347 fimD; outer membrane usher protein
D XDD1_2345 fimD; Outer membrane usher protein precursor K07347 fimD; outer membrane usher protein
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:xdo04812]
D XDD1_3553 mreB; Rod shape-determining protein mreB K03569 mreB; rod shape-determining protein MreB and related proteins
D XDD1_3013 ftsZ; Cell division protein ftsZ K03531 ftsZ; cell division protein FtsZ
D XDD1_3014 ftsA; Cell division protein ftsA K03590 ftsA; cell division protein FtsA
D XDD1_2088 minC; putative septum site-determining protein minC K03610 minC; septum site-determining protein MinC
D XDD1_2087 minD; Septum site-determining protein minD K03609 minD; septum site-determining protein MinD
D XDD1_2086 minE; Cell division topological specificity factor K03608 minE; cell division topological specificity factor
D XDD1_2611 ParB domain protein nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:xdo04147]
D XDD1_0908 htpG; Chaperone protein htpG K04079 HSP90A; molecular chaperone HtpG
D XDD1_3129 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D XDD1_2254 gapA; Glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D XDD1_0989 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D XDD1_0999 putative Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D XDD1_2074 pykA; Pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D XDD1_1850 pykF; Pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D XDD1_3670 rotA; Peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D XDD1_0829 putative peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D XDD1_0647 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D XDD1_0760 dnaK; Chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK
D XDD1_3262 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D XDD1_2394 guaB; Inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D XDD1_0277 tuf; Elongation factor Tu 2 K02358 tuf; elongation factor Tu
D XDD1_3648 tuf; Elongation factor Tu 2 K02358 tuf; elongation factor Tu
D XDD1_2495 hinT; HIT-like protein hinT K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D XDD1_3857 conserved protein of unknown function K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D XDD1_2184 conserved membrane protein of unknown function K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D XDD1_3031 putative long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D XDD1_2084 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D XDD1_0910 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D XDD1_0903 apt; Adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D XDD1_1211 Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D XDD1_0219 argH; Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D XDD1_0218 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D XDD1_0530 Cystathionine beta-lyase (fragment) K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D XDD1_3039 metC; Cystathionine beta-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D XDD1_0450 fbp; Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D XDD1_3147 galK; Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D XDD1_0190 glpK; Glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D XDD1_3833 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D XDD1_3193 hemB; Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D XDD1_0658 phoA; Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D XDD1_1005 putative Phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D XDD1_3540 gyaR; GyaR K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D XDD1_2982 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D XDD1_3607 purH; Bifunctional purine biosynthesis protein purH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase; IMP cyclohydrolase] K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D XDD1_2994 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D XDD1_2077 zwf; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D XDD1_0184 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D XDD1_1360 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:xdo02048]
D XDD1_0592 conserved hypothetical protein (Uncharacterized protein ygbT) K15342 cas1; CRISP-associated protein Cas1
D XDD1_0591 conserved hypothetical protein (similar to protein ygbF of E. coli) K09951 cas2; CRISPR-associated protein Cas2
D XDD1_0598 conserved hypothetical protein (Similar to unknown protein YgcB of Escherichia coli) K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D XDD1_0597 conserved hypothetical protein (Similar to unknown protein YgcL of Escherichia coli) K19123 casA; CRISPR system Cascade subunit CasA
D XDD1_0596 conserved protein of unknown function K19046 casB; CRISPR system Cascade subunit CasB
D XDD1_0595 conserved hypothetical protein (Similar to unknown protein YgcJ of Escherichia coli) K19124 casC; CRISPR system Cascade subunit CasC
D XDD1_0594 conserved hypothetical protein (similar to protein ygcI precursor of E. coli) K19125 casD; CRISPR system Cascade subunit CasD
D XDD1_0593 conserved hypothetical protein (Similar to unknown protein YgcH of Escherichia coli) K19126 casE; CRISPR system Cascade subunit CasE
D XDD1_2950 Type I restriction enzyme, R subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D XDD1_2949 hsdS; Type I restriction-modification system specificity subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D XDD1_2948 putative Type I restriction-modification system, methylase (M) subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D XDD1_0068 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D XDD1_0699 Cytosine-specific methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D XDD1_1646 Putative holin protein (fragment) K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]
D XDD1_0720 conserved protein of unknown function K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC
D XDD1_1493 conserved protein of unknown function K19048 symE; toxic protein SymE
D XDD1_1500 conserved protein of unknown function K19048 symE; toxic protein SymE
D XDD1_0952 conserved protein of unknown function K19048 symE; toxic protein SymE
D XDD1_1822 conserved protein of unknown function K19048 symE; toxic protein SymE
D XDD1_1828 conserved protein of unknown function K19048 symE; toxic protein SymE
D XDD1_1836 conserved protein of unknown function K19048 symE; toxic protein SymE
D XDD1_3695 conserved protein of unknown function K19048 symE; toxic protein SymE
D XDD1_3717 conserved protein of unknown function K19048 symE; toxic protein SymE
D XDD1_3721 conserved protein of unknown function K19048 symE; toxic protein SymE
D XDD1_3728 conserved protein of unknown function K19048 symE; toxic protein SymE
D XDD1_3741 conserved protein of unknown function K19048 symE; toxic protein SymE
D XDD1_0556 mazF_1; mRNA interferase MazF protein (toxin-antitoxin system) K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D XDD1_3836 mazF_2; mRNA interferase MazF protein (toxin-antitoxin system) K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D XDD1_0557 mazE_1; MazE antitoxin K07172 mazE; antitoxin MazE
D XDD1_0560 MazF-like protein K18841 chpB; mRNA interferase ChpB [EC:3.1.-.-]
D XDD1_0561 putative counterpart of the neighbouring MazF-like protein K18842 chpS; antitoxin ChpS
D XDD1_2307 relB; RelB antitoxin K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D XDD1_0725 putative counterpart of the neighbouring HipB-like protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D XDD1_0152 hipA; HipA toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D XDD1_3932 HipA-like protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D XDD1_0444 conserved protein of unknown function K07339 hicA; mRNA interferase HicA [EC:3.1.-.-]
D XDD1_0443 conserved protein of unknown function K18843 hicB; antitoxin HicB
D XDD1_3420 ydcQ; Uncharacterized HTH-type transcriptional regulator ydcQ K18843 hicB; antitoxin HicB
D XDD1_0175 conserved protein of unknown function K19160 yafO; mRNA interferase YafO [EC:3.1.-.-]
D XDD1_0894 ymoA; Modulating protein ymoA K05839 hha; haemolysin expression modulating protein
D XDD1_0895 conserved protein of unknown function K19162 tomB; hha toxicity modulator TomB
D XDD1_1878 pspC; Phage shock protein C K03973 pspC; phage shock protein C
D XDD1_1877 pspB; Phage shock protein B K03970 pspB; phage shock protein B
D XDD1_1305 conserved protein of unknown function K19163 ccdB; toxin CcdB
D XDD1_0684 CcdA-like protein (CcdAB toxin-antitoxin system) K19164 ccdA; antitoxin CcdA
D XDD1_1306 conserved protein of unknown function K19164 ccdA; antitoxin CcdA
D XDD1_0465 ParE-like protein (ParDE toxin-antitoxin system) K19092 parE1_3_4; toxin ParE1/3/4
D XDD1_0540 putative counterpart of the neighbouring ParD-like protein K19092 parE1_3_4; toxin ParE1/3/4
D XDD1_p0003 ParD-like protein (ParDE toxin-antitoxin system) K19092 parE1_3_4; toxin ParE1/3/4
D XDD1_0466 putative counterpart of the neighbouring ParE-like protein K07746 parD1_3_4; antitoxin ParD1/3/4
D XDD1_0111 doc; Death on curing protein K07341 doc; death on curing protein
D XDD1_0112 phd; Prevent-host-death protein K19165 phd; antitoxin Phd
D XDD1_3142 conserved protein of unknown function K19166 higB; mRNA interferase HigB [EC:3.1.-.-]
D XDD1_3141 Predicted transcription regulator containing HTH domain K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D XDD1_0709 Addiction module antitoxin K21498 higA-1; antitoxin HigA-1
D XDD1_0525 VapC-like protein (VapBC toxin-antitoxin system) K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D XDD1_0577 VapC-like protein (VapBC toxin-antitoxin system) K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D XDD1_0374 vagC; Virulence-associated protein vagC K18829 mvpT; antitoxin VapB
D XDD1_0524 putative counterpart of the neighbouring VapC-like protein K18829 mvpT; antitoxin VapB
D XDD1_0578 putative counterpart of the neighbouring VapC-like protein K18829 mvpT; antitoxin VapB
D XDD1_0950 PilT protein, N-terminal K07062 fitB; toxin FitB [EC:3.1.-.-]
D XDD1_2385 bssS; Biofilm regulator BssS K12148 bssS; biofilm regulator BssS
D XDD1_3013 ftsZ; Cell division protein ftsZ K03531 ftsZ; cell division protein FtsZ
D XDD1_3553 mreB; Rod shape-determining protein mreB K03569 mreB; rod shape-determining protein MreB and related proteins
D XDD1_3396 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D XDD1_3397 parE; DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D XDD1_2698 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D XDD1_1128 putative toxin-antitoxin system protein K18837 cbtA; cytoskeleton-binding toxin CbtA and related proteins
D XDD1_2958 conserved protein of unknown function K09159 cptB; antitoxin CptB
D XDD1_2787 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:xdo01504]
D XDD1_0504 Histone acetyltransferase HPA2 and acetyltransferase K18816 aac6-I; aminoglycoside 6'-N-acetyltransferase I [EC:2.3.1.82]
D XDD1_0531 putative Na+/H+ antiporter K18218 tet35; tetracycline resistance efflux pump
D XDD1_0233 membrane protein of unknown function K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D XDD1_0244 membrane protein of unknown function K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D XDD1_1186 conserved membrane protein of unknown function K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D XDD1_0526 Major facilitator superfamily (Mfs_1) transporter K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D XDD1_0772 putative transporter K18553 cmlR; MFS transporter, DHA1 family, chloramphenicol resistance protein
D XDD1_0403 putative Transmembrane efflux protein of the MFS type K18553 cmlR; MFS transporter, DHA1 family, chloramphenicol resistance protein
D XDD1_2877 cat; Chloramphenicol acetyltransferase 3 K19271 catA; chloramphenicol O-acetyltransferase type A [EC:2.3.1.28]
D XDD1_3845 smvA; Methyl viologen resistance protein smvA K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
D XDD1_3341 putative transmembrane-transport protein K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
D XDD1_2196 bla; Beta-lactamase CTX-M-2 K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D XDD1_2719 Putative non-ribosomal peptide synthetase K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D XDD1_2481 phoQ; sensory histidine kinase in two-component regulatory system with PhoP, regulates gene expression at low [Mg+], senses Mg+ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D XDD1_2480 phoP; response regulator in two-component regulatory system with PhoQ, regulates gene expression at low [Mg+] (OmpR family) K07660 phoP; two-component system, OmpR family, response regulator PhoP
D XDD1_0898 acrA; Acriflavine resistance protein A K03585 acrA; membrane fusion protein, multidrug efflux system
D XDD1_0897 acrB; Acriflavine resistance protein B K18138 acrB; multidrug efflux pump
D XDD1_0922 cueR; HTH-type transcriptional regulator CueR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D XDD1_3401 tolC; Outer membrane protein tolC K12340 tolC; outer membrane protein
D XDD1_2115 putative outer membrane efflux protein K12340 tolC; outer membrane protein
D XDD1_1591 opnP; outer membrane protein, OpnP K09476 ompF; outer membrane pore protein F
D XDD1_0811 opnS; growth-phase-regulated outer membrane protein OpnS K09476 ompF; outer membrane pore protein F
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins [BR:xdo00536]
D XDD1_1119 two-partner secretion family protein, TpsA K15125 fhaB; filamentous hemagglutinin
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:xdo00537]
D XDD1_0658 phoA; Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins [BR:xdo03200]
D XDD1_2917 putative endopeptidase K14744 rzpD; prophage endopeptidase [EC:3.4.-.-]
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:xdo03100]
D XDD1_tRNA2 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D XDD1_tRNA52 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D XDD1_tRNA54 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D XDD1_tRNA44 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D XDD1_tRNA45 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D XDD1_tRNA24 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D XDD1_tRNA25 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D XDD1_tRNA21 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D XDD1_tRNA12 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D XDD1_tRNA63 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D XDD1_tRNA37 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D XDD1_tRNA38 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D XDD1_tRNA40 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D XDD1_tRNA39 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D XDD1_tRNA10 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D XDD1_tRNA22 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D XDD1_tRNA55 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D XDD1_tRNA34 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D XDD1_tRNA71 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D XDD1_tRNA69 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D XDD1_tRNA26 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D XDD1_tRNA50 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D XDD1_tRNA9 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D XDD1_tRNA3 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D XDD1_tRNA16 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D XDD1_tRNA18 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D XDD1_tRNA17 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D XDD1_tRNA33 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D XDD1_tRNA56 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D XDD1_tRNA7 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D XDD1_tRNA13 tRNA-His K14226 tRNA-His; tRNA His
D XDD1_tRNA1 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D XDD1_tRNA51 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D XDD1_tRNA53 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D XDD1_tRNA75 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XDD1_tRNA35 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XDD1_tRNA19 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XDD1_tRNA14 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XDD1_tRNA74 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XDD1_tRNA73 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XDD1_tRNA68 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XDD1_tRNA27 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D XDD1_tRNA60 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D XDD1_tRNA61 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D XDD1_tRNA28 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D XDD1_tRNA29 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D XDD1_tRNA30 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D XDD1_tRNA67 tRNA-Met K14230 tRNA-Met; tRNA Met
D XDD1_tRNA70 tRNA-Met K14230 tRNA-Met; tRNA Met
D XDD1_tRNA20 tRNA-Met K14230 tRNA-Met; tRNA Met
D XDD1_tRNA46 tRNA-Met K14230 tRNA-Met; tRNA Met
D XDD1_tRNA47 tRNA-Met K14230 tRNA-Met; tRNA Met
D XDD1_tRNA48 tRNA-Met K14230 tRNA-Met; tRNA Met
D XDD1_tRNA72 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D XDD1_tRNA76 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D XDD1_tRNA41 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D XDD1_tRNA15 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D XDD1_tRNA49 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D XDD1_tRNA42 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D XDD1_tRNA32 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D XDD1_tRNA23 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D XDD1_tRNA64 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D XDD1_tRNA43 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D XDD1_tRNA8 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D XDD1_tRNA5 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D XDD1_tRNA4 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D XDD1_tRNA11 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D XDD1_tRNA36 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D XDD1_tRNA6 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D XDD1_tRNA57 tRNA-Val K14237 tRNA-Val; tRNA Val
D XDD1_tRNA59 tRNA-Val K14237 tRNA-Val; tRNA Val
D XDD1_tRNA58 tRNA-Val K14237 tRNA-Val; tRNA Val
D XDD1_tRNA62 tRNA-Val K14237 tRNA-Val; tRNA Val
D XDD1_tRNA65 tRNA-Val K14237 tRNA-Val; tRNA Val
D XDD1_tRNA66 tRNA-Val K14237 tRNA-Val; tRNA Val
D XDD1_16s_rRNA_6 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XDD1_16s_rRNA_2 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XDD1_16s_rRNA_7 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XDD1_16s_rRNA_4 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XDD1_16s_rRNA_1 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XDD1_16s_rRNA_5 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XDD1_16s_rRNA_3 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XDD1_23s_rRNA_2 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XDD1_23s_rRNA_1 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XDD1_23s_rRNA_4 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XDD1_23s_rRNA_3 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XDD1_23s_rRNA_6 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XDD1_23s_rRNA_7 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XDD1_23s_rRNA_5 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XDD1_5s_rRNA_8 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D XDD1_5s_rRNA_1 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D XDD1_5s_rRNA_5 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D XDD1_5s_rRNA_7 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D XDD1_5s_rRNA_6 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D XDD1_5s_rRNA_2 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D XDD1_5s_rRNA_3 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D XDD1_5s_rRNA_4 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D XDD1_misc_RNA_19 SRP_bact K01983 ffs; SRP RNA
D XDD1_misc_RNA_21 RNaseP_bact_a K01978 rnpB; M1 RNA
D XDD1_misc_RNA_15 tmRNA K15035 ssrA; transfer-messenger RNA
D XDD1_misc_RNA_4 SraH K18504 arcZ; small regulatory RNA ArcZ
D XDD1_misc_RNA_11 tke1 K15841 glmY; small regulatory RNA GlmY
D XDD1_misc_RNA_6 SraJ K18505 glmZ; small regulatory RNA GlmZ
D XDD1_misc_RNA_23 RyhB K18507 ryhB; small regulatory RNA RyhB
D XDD1_misc_RNA_22 RyhB K18507 ryhB; small regulatory RNA RyhB
D XDD1_misc_RNA_12 RybB K18508 rybB; small regulatory RNA RybB
D XDD1_misc_RNA_16 RprA K18518 rprA; small regulatory RNA RprA
D XDD1_misc_RNA_8 RyeE K18520 cyaR; small regulatory RNA CyaR
D XDD1_misc_RNA_5 GcvB K18521 gcvB; small regulatory RNA GcvB
D XDD1_misc_RNA_2 Spot_42 K18527 spf; small regulatory RNA Spot 42
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D XDD1_0796 dkgA; 2,5-diketo-D-gluconic acid reductase A K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D XDD1_3206 conserved protein of unknown function K22025 denD; D-erythronate 2-dehydrogenase [EC:1.1.1.410]
D XDD1_0579 conserved protein of unknown function K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8]
D XDD1_0580 putative indolepyruvate:ferredoxin oxidoreductase oxidoreductase protein K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8]
D XDD1_0407 putative oxyreductase protein K04090 E1.2.7.8; indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8]
D XDD1_3481 fadH; 2,4-dienoyl-CoA reductase [NADPH] K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D XDD1_3340 papC; Similar to dehydrogenase papc of streptomyces pristinaespiralis K24002 cmlC; 4-amino-4-deoxyprephenate dehydrogenase [EC:1.3.1.121]
D XDD1_3253 qor; Quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D XDD1_1993 mdaB; Modulator of drug activity B K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10]
D XDD1_2148 putative Azoreductase K03206 azr; azobenzene reductase [EC:1.7.1.6]
D XDD1_2100 azoR; FMN-dependent NADH-azoreductase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D XDD1_0445 msrA; Peptide methionine sulfoxide reductase msrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D XDD1_2253 msrB; Peptide methionine sulfoxide reductase msrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D XDD1_2660 yfcG; Uncharacterized GST-like protein yfcG K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D XDD1_2420 bcp; putative peroxiredoxin bcp K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D XDD1_1903 tpx; putative thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D XDD1_2793 hmp; Flavohemoprotein K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17]
D XDD1_1244 putative siderophore biosynthesis protein K27501 alcA; putrescine N-hydroxylase [EC:1.14.13.252]
D XDD1_1742 ftnA; Ferritin-1 K02217 ftnA; ferritin [EC:1.16.3.2]
D XDD1_0188 fpr; Ferredoxin--NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D XDD1_2423 conserved protein of unknown function K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D XDD1_0498 nrdG; Anaerobic ribonucleoside-triphosphate reductase-activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D XDD1_1915 putative radical activating enzyme K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D XDD1_1565 pflA; Pyruvate formate-lyase 1-activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D XDD1_3160 pcm; Protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D XDD1_1853 cfa; Cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D XDD1_2969 Carbamoyltransferase K00612 nodU; carbamoyltransferase [EC:2.1.3.-]
D XDD1_3898 putative Acetyltransferase, GNAT family K22441 paiA; diamine N-acetyltransferase [EC:2.3.1.57]
D XDD1_1289 lnt; Apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D XDD1_0494 yhbS; Uncharacterized N-acetyltransferase yhbS K03824 yhbS; putative acetyltransferase [EC:2.3.1.-]
D XDD1_2147 putative acetyltransferase K03826 yiaC; putative acetyltransferase [EC:2.3.1.-]
D XDD1_3477 yjaB; Uncharacterized N-acetyltransferase yjaB K03827 yjaB; putative acetyltransferase [EC:2.3.1.-]
D XDD1_0527 yjgM; Uncharacterized N-acetyltransferase yjgM K03828 yjgM; putative acetyltransferase [EC:2.3.1.-]
D XDD1_1552 aat; Leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D XDD1_1233 yfiP; DTW domain-containing protein yfiP K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D XDD1_3372 lgt; Prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D XDD1_1177 apbE; Thiamine biosynthesis lipoprotein ApbE K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D XDD1_3209 conserved protein of unknown function K21948 otnK; 3-dehydrotetronate 4-kinase [EC:2.7.1.217]
D XDD1_1815 putative enzyme K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D XDD1_3408 glnE; Glutamate-ammonia-ligase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D XDD1_3269 aceK; Isocitrate dehydrogenase kinase/phosphatase K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-]
D XDD1_0637 fes; Enterochelin esterase K07214 fes; iron(III)-enterobactin esterase [EC:3.1.1.108]
D XDD1_1350 ybgC; Acyl-CoA thioester hydrolase YbgC K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D XDD1_3468 Thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D XDD1_2214 trpH; Protein trpH K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D XDD1_2623 sixA; Phosphohistidine phosphatase sixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D XDD1_1944 DNA-specific endonuclease I (Modular protein) K01150 endA; deoxyribonuclease I [EC:3.1.21.1]
D XDD1_0729 yjjV; Uncharacterized deoxyribonuclease yjjV K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D XDD1_2496 ycfH; Uncharacterized deoxyribonuclease ycfH K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D XDD1_1321 ybfF; Esterase ybfF K01175 ybfF; esterase [EC:3.1.-.-]
D XDD1_1190 conserved protein of unknown function K11750 frsA; esterase FrsA [EC:3.1.-.-]
D XDD1_2554 putative lysozyme K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D XDD1_2555 amiD; N-acetylmuramoyl-L-alanine amidase AmiD K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D XDD1_0312 def; Peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D XDD1_3038 def; Peptide deformylase 2 K01462 PDF; peptide deformylase [EC:3.5.1.88]
D XDD1_0501 yjgF; RutC family protein yjgF K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D XDD1_3409 conserved protein of unknown function K18446 ygiF; triphosphatase [EC:3.6.1.25]
D XDD1_3621 nudI; Nucleoside triphosphatase nudI K12944 nudI; nucleoside triphosphatase [EC:3.6.1.-]
D XDD1_2509 conserved protein of unknown function K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D XDD1_0048 yieN; conserved hypothetical protein; putative transcriptional regulator K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D XDD1_1707 conserved protein of unknown function K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D XDD1_3897 conserved protein of unknown function K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D XDD1_2878 SRR; Serine racemase K22589 thadh; threo-3-hydroxy-L-aspartate ammonia-lyase [EC:4.3.1.16]
D XDD1_3350 csdA; Cysteine sulfinate desulfinase K01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-]
D XDD1_3208 Uncharacterized 28.3 kDa protein in gbd 5'region K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35]
D XDD1_0452 mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D XDD1_2190 rnfD; Electron transport complex protein rnfD K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D XDD1_2189 rnfC; Electron transport complex protein rnfC K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D XDD1_2188 rnfB; Electron transport complex protein rnfB K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D XDD1_1171 nqrA; Na(+)-translocating NADH-quinone reductase subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1]
D XDD1_1172 nqrB; Na(+)-translocating NADH-quinone reductase subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1]
D XDD1_1173 nqrC; Na(+)-translocating NADH-quinone reductase subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1]
D XDD1_1174 nqrD; Na(+)-translocating NADH-quinone reductase subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1]
D XDD1_1175 nqrE; Na(+)-translocating NADH-quinone reductase subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D XDD1_2392 nqrE; Na(+)-translocating NADH-quinone reductase subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D XDD1_1176 nqrF; Na(+)-translocating NADH-quinone reductase subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
D XDD1_3582 zntA; Lead, cadmium, zinc and mercury-transporting ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D XDD1_2379 mgtB; Magnesium-transporting ATPase, P-type 1 K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]
C 99981 Carbohydrate metabolism
D XDD1_3108 sfsA; Sugar fermentation stimulation protein homolog K06206 sfsA; sugar fermentation stimulation protein A
C 99982 Energy metabolism
D XDD1_3963 fdhD; Protein fdhD homolog K02379 fdhD; FdhD protein
D XDD1_2782 fdx; 2Fe-2S ferredoxin K04755 fdx; ferredoxin, 2Fe-2S
D XDD1_2191 rnfG; Electron transport complex protein rnfG K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D XDD1_2193 rnfE; Electron transport complex protein rnfE K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D XDD1_2187 rnfA; Electron transport complex protein rnfA K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D XDD1_0044 mioC; FMN-binding protein, required for biotin synthase activity K06205 mioC; MioC protein
D XDD1_2956 fldB; Flavodoxin-2 K03840 fldB; flavodoxin II
D XDD1_2786 nifU; NifU-like protein K04488 iscU; nitrogen fixation protein NifU and related proteins
D XDD1_1303 fldA; flavodoxin 1 K03839 fldA; flavodoxin I
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D XDD1_2703 cysZ; Protein CysZ homolog K06203 cysZ; CysZ protein
D XDD1_1154 conserved protein of unknown function K06997 yggS; PLP dependent protein
D XDD1_1214 Acetyltransferase, GNAT family K22479 argA; N-acetyltransferase
D XDD1_3480 GCN5-related N-acetyltransferase K22479 argA; N-acetyltransferase
C 99986 Glycan metabolism
D XDD1_2200 yciS; Inner membrane protein yciS K08992 lapA; lipopolysaccharide assembly protein A
D XDD1_2199 conserved protein of unknown function K19804 lapB; lipopolysaccharide assembly protein B
C 99987 Cofactor metabolism
D XDD1_0360 hemY; Protein hemY K02498 hemY; HemY protein
D XDD1_3197 ubiB; putative ubiquinone biosynthesis protein ubiB K03688 ubiB; ubiquinone biosynthesis protein
D XDD1_3198 conserved protein of unknown function K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D XDD1_3406 conserved protein of unknown function K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
D XDD1_3693 mobB; Molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
C 99988 Secondary metabolism
D XDD1_3393 sufI; Protein sufI K04753 sufI; suppressor of ftsI
D XDD1_1967 Achromobactin biosynthetic protein AcsB K23376 sbnG; staphyloferrin B biosynthesis citrate synthase
C 99999 Others
D XDD1_3487 yqjF; Inner membrane protein yqjF K15977 K15977; putative oxidoreductase
D XDD1_1232 conserved protein of unknown function K09181 yfiQ; acetyltransferase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D XDD1_1260 cspE; Cold shock-like protein CspE K03704 cspA; cold shock protein
D XDD1_1548 cspD; Cold shock-like protein CspD K03704 cspA; cold shock protein
D XDD1_2381 cspC; Cold shock-like protein CspC K03704 cspA; cold shock protein
D XDD1_2464 cspC; Cold shock-like protein CspC K03704 cspA; cold shock protein
D XDD1_0889 glnK; Nitrogen regulatory protein P-II 2 K04752 glnK; nitrogen regulatory protein P-II 2
D XDD1_3865 yhgF; Protein yhgF K06959 tex; protein Tex
C 99974 Translation
C 99975 Protein processing
D XDD1_1549 clpS; ATP-dependent Clp protease adapter protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D XDD1_0875 tig; Trigger factor K03545 tig; trigger factor
D XDD1_3955 fdhE; Protein fdhE homolog K02380 fdhE; FdhE protein
D XDD1_2828 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D XDD1_0328 conserved protein of unknown function K07391 comM; magnesium chelatase family protein
D XDD1_3892 nfuA; Fe/S biogenesis protein nfuA K07400 nfuA; Fe/S biogenesis protein NfuA
C 99976 Replication and repair
D XDD1_3323 xni; Protein Xni K01146 xni; protein Xni
D XDD1_0691 conserved protein of unknown function K07454 K07454; putative restriction endonuclease
D XDD1_0122 conserved protein of unknown function K03630 radC; DNA repair protein RadC
D XDD1_3200 rmuC; DNA recombination protein rmuC homolog K09760 rmuC; DNA recombination protein RmuC
D XDD1_3492 conserved protein of unknown function K07460 yraN; putative endonuclease
D XDD1_0314 smf; Protein smf K04096 smf; DNA processing protein
D XDD1_3058 fimB; Type 1 fimbriae regulatory protein fimB K07357 fimB; type 1 fimbriae regulatory protein FimB
D XDD1_1560 rarA; Replication-associated recombination protein A K07478 ycaJ; putative ATPase
D XDD1_0315 conserved protein of unknown function K07479 yrdD; putative DNA topoisomerase
D XDD1_1682 putative phage primase K06919 K06919; putative DNA primase/helicase
D XDD1_1061 Putative prophage primase (modular protein) K06919 K06919; putative DNA primase/helicase
D XDD1_3078 putative phage primase K06919 K06919; putative DNA primase/helicase
D XDD1_2745 putative phage primase K06919 K06919; putative DNA primase/helicase
D XDD1_0008 transposase (fragment) K07482 K07482; transposase, IS30 family
D XDD1_0672 transposase K07482 K07482; transposase, IS30 family
D XDD1_0846 transposase K07482 K07482; transposase, IS30 family
D XDD1_0973 transposase K07482 K07482; transposase, IS30 family
D XDD1_0997 transposase K07482 K07482; transposase, IS30 family
D XDD1_1288 transposase K07482 K07482; transposase, IS30 family
D XDD1_1403 transposase K07482 K07482; transposase, IS30 family
D XDD1_1416 transposase (fragment) K07482 K07482; transposase, IS30 family
D XDD1_1463 transposase (fragment) K07482 K07482; transposase, IS30 family
D XDD1_1481 transposase K07482 K07482; transposase, IS30 family
D XDD1_1720 transposase K07482 K07482; transposase, IS30 family
D XDD1_0553 transposase K07482 K07482; transposase, IS30 family
D XDD1_2406 transposase K07482 K07482; transposase, IS30 family
D XDD1_2553 transposase K07482 K07482; transposase, IS30 family
D XDD1_3822 transposase (fragment) K07482 K07482; transposase, IS30 family
D XDD1_3113 transposase (fragment) K07482 K07482; transposase, IS30 family
D XDD1_1741 transposase (fragment) K07482 K07482; transposase, IS30 family
D XDD1_1789 transposase (fragment) K07482 K07482; transposase, IS30 family
D XDD1_3066 transposase K07482 K07482; transposase, IS30 family
D XDD1_3947 transposase K07482 K07482; transposase, IS30 family
D XDD1_3952 transposase K07482 K07482; transposase, IS30 family
D XDD1_2445 transposase K07482 K07482; transposase, IS30 family
D XDD1_3872 insN; transposase K07483 K07483; transposase
D XDD1_0229 transposase K07486 K07486; transposase
D XDD1_0249 transposase K07486 K07486; transposase
D XDD1_1787 transposase (fragment) K07491 rayT; REP-associated tyrosine transposase
D XDD1_0222 Integrase, catalytic domain K07497 K07497; putative transposase
D XDD1_0257 Integrase, catalytic domain K07497 K07497; putative transposase
D XDD1_3873 transposase K07497 K07497; putative transposase
D XDD1_3874 transposase (fragment) K07497 K07497; putative transposase
D XDD1_0660 protein of unknown function K07498 K07498; putative transposase
C 99979 Viral proteins
C 99998 Others
D XDD1_1876 pspA; Phage shock protein A K03969 pspA; phage shock protein A
D XDD1_0905 conserved protein of unknown function K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D XDD1_2675 cycA; D-serine/D-alanine/glycine transporter K03293 TC.AAT; amino acid transporter, AAT family
D XDD1_0358 yifK; putative transport protein YifK K03293 TC.AAT; amino acid transporter, AAT family
D XDD1_0992 dtpB; Dipeptide and tripeptide permease B K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D XDD1_1040 yidK; Uncharacterized symporter yidK K03307 TC.SSS; solute:Na+ symporter, SSS family
D XDD1_0827 Transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D XDD1_2354 Uncharacterized transporter HI_0883 K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D XDD1_2469 yaaJ; Uncharacterized transporter yaaJ K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D XDD1_0826 brnQ; Branched-chain amino acid transport system 2 carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D XDD1_3940 Cytosine/purines, uracil, thiamine, allantoin permease family protein (Modular protein) K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
D XDD1_0730 Uncharacterized transporter HI_0519 K03317 TC.CNT; concentrative nucleoside transporter, CNT family
C 99978 Cell growth
D XDD1_2224 ispZ; putative intracellular septation protein K06190 ispZ; intracellular septation protein
D XDD1_0150 conserved exported protein of unknown function K22719 envC; murein hydrolase activator
C 99993 Cell motility
D XDD1_2494 conserved exported protein of unknown function K07337 K07337; penicillin-binding protein activator
D XDD1_1610 sxy; Protein sxy K07343 tfoX; DNA transformation protein and related proteins
D XDD1_3316 syd; Protein syd K15723 syd; SecY interacting protein Syd
C 99995 Signaling proteins
D XDD1_3001 ampE; Protein AmpE K03807 ampE; AmpE protein
D XDD1_0626 terA; tellurium resistance protein terA K05792 terA; tellurite resistance protein TerA
D XDD1_0623 terD; tellurium resistance protein terD K05795 terD; tellurium resistance protein TerD
D XDD1_0627 terZ; tellurium resistance protein terZ K05791 terZ; tellurium resistance protein TerZ
D XDD1_1747 proQ; ProP effector K03607 proQ; ProP effector
D XDD1_p0007 conserved protein of unknown function K03607 proQ; ProP effector
D XDD1_0094 uspA; Universal stress protein A K06149 uspA; universal stress protein A
D XDD1_1942 uspF; Universel stress protein F putative electron transfer flavoprotein with adenine nucleotide-binding domain K14061 uspF; universal stress protein F
D XDD1_1941 uspG; universal stress protein UP12, flavoprotein, ETFP adenine nucleotide-binding domain K11932 uspG; universal stress protein G
D XDD1_3818 typA; GTP-binding protein typA/BipA K06207 typA; GTP-binding protein
D XDD1_2034 Conserved hypothetical protein with FHA domain (probable component of SST VI cluster) K07169 K07169; FHA domain-containing protein
D XDD1_1888 Conserved hypothetical protein with FHA domain (probable component of SST VI cluster) K07169 K07169; FHA domain-containing protein
D XDD1_1292 ybeZ; PhoH-like protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D XDD1_3410 conserved exported protein of unknown function K07184 ygiM; SH3 domain protein
D XDD1_0794 smp; Protein smp K07186 smp; membrane protein
D XDD1_0862 conserved protein of unknown function K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D XDD1_1559 lolA; Outer-membrane lipoprotein carrier protein K03634 lolA; outer membrane lipoprotein carrier protein
D XDD1_2002 lolB; Outer-membrane lipoprotein lolB K02494 lolB; outer membrane lipoprotein LolB
D XDD1_2618 mlaA; putative phospholipid-binding lipoprotein mlaA K04754 mlaA; phospholipid-binding lipoprotein MlaA
D XDD1_0347 wzzE; Lipopolysaccharide biosynthesis protein wzzE K05790 wzzE; lipopolysaccharide biosynthesis protein WzzE
D XDD1_1864 pcp; Outer membrane lipoprotein pcp K06077 slyB; outer membrane lipoprotein SlyB
D XDD1_3297 skp; Chaperone protein skp K06142 hlpA; outer membrane protein
D XDD1_3159 nlpD; Lipoprotein nlpD K06194 nlpD; lipoprotein NlpD
D XDD1_0483 nlpI; Lipoprotein nlpI K05803 nlpI; lipoprotein NlpI
D XDD1_2221 ompW; Outer membrane protein W K07275 ompW; outer membrane protein
D XDD1_3965 conserved exported protein of unknown function K07280 K07280; outer membrane protein
D XDD1_3968 conserved exported protein of unknown function K07280 K07280; outer membrane protein
D XDD1_2083 yeaY; Uncharacterized lipoprotein yeaY K07285 slp; outer membrane lipoprotein
D XDD1_0872 yajG; Uncharacterized lipoprotein yajG K07286 yajG; uncharacterized lipoprotein
D XDD1_1449 asmA; Suppressor of ompF assembly mutants K07289 asmA; AsmA protein
D XDD1_0923 ybbJ; Inner membrane protein ybbJ K07340 ybbJ; inner membrane protein
D XDD1_0490 putative membrane protein K01993 ABC-2.TX; HlyD family secretion protein
D XDD1_2116 Membrane Secretion protein HlyD K02005 ABC.CD.TX; HlyD family secretion protein
D XDD1_2771 rodZ; Cytoskeleton protein rodZ K15539 rodZ; cytoskeleton protein RodZ
C 99994 Others
D XDD1_3852 phoU; Phosphate transport system protein phoU K02039 phoU; phosphate transport system protein
D XDD1_0625 tellurium resistance protein terB K05793 terB; tellurite resistance protein TerB
D XDD1_0624 Tellurium resistance protein terC K05794 terC; tellurite resistance protein TerC
D XDD1_2056 cutC; Copper homeostasis protein CutC K06201 cutC; copper homeostasis protein
D XDD1_3390 apaG; Protein ApaG K06195 apaG; ApaG protein
D XDD1_0366 cyaY; Protein CyaY K06202 cyaY; iron-sulfur cluster assembly protein CyaY
D XDD1_1812 hmuS; Hemin transport protein hmuS K07225 hmuS; putative hemin transport protein
B
B 09194 Poorly characterized
C 99996 General function prediction only
D XDD1_2656 cvpA; Colicin V production protein K03558 cvpA; membrane protein required for colicin V production
D XDD1_0618 bax; Protein bax K03796 bax; Bax protein
D XDD1_1602 pqiB; Paraquat-inducible protein B K06192 pqiB; paraquat-inducible protein B
D XDD1_1230 conserved exported protein of unknown function K05811 yfiM; putative lipoprotein
D XDD1_0727 Osmotically inducible protein Y K04065 osmY; hyperosmotically inducible periplasmic protein
D XDD1_2820 grcA; Autonomous glycyl radical cofactor K06866 grcA; autonomous glycyl radical cofactor
D XDD1_2937 Protein secretion chaperonin K06878 K06878; tRNA-binding protein
D XDD1_0765 conserved protein of unknown function K06886 glbN; hemoglobin
D XDD1_3120 erpA; Iron-sulfur cluster insertion protein erpA K15724 erpA; iron-sulfur cluster insertion protein
D XDD1_1751 ydjM; Inner membrane protein ydjM K07038 K07038; inner membrane protein
D XDD1_3908 php; Phosphotriesterase homology protein K07048 PTER; phosphotriesterase-related protein
D XDD1_3769 conserved membrane protein of unknown function K07058 K07058; membrane protein
D XDD1_0645 conserved membrane protein of unknown function K07113 fxsA; UPF0716 protein FxsA
D XDD1_3355 ygdK; Uncharacterized sufE-like protein ygdK K02426 sufE; cysteine desulfuration protein SufE
D XDD1_2387 conserved protein of unknown function K07146 K07146; UPF0176 protein
D XDD1_2477 hflD; High frequency lysogenization protein hflD homolog K07153 hflD; high frequency lysogenization protein
D XDD1_1242 fhuF; ferric hydroxamate transport protein K13255 fhuF; ferric iron reductase protein FhuF
D XDD1_3657 slyX; Protein slyX K03745 slyX; SlyX protein
D XDD1_0782 creA; Protein CreA K05805 creA; CreA protein
D XDD1_3137 sprT; Protein sprT K02742 sprT; SprT protein
D XDD1_2655 dedD; Protein dedD K03749 dedD; DedD protein
D XDD1_0069 damX; putative membrane protein K03112 damX; DamX protein
D XDD1_1440 sanA; Protein sanA K03748 sanA; SanA protein
D XDD1_2652 dedA; Protein dedA K03975 dedA; membrane-associated protein
D XDD1_1601 pqiA; Paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A
D XDD1_1880 conserved membrane protein of unknown function K08990 ycjF; putative membrane protein
D XDD1_3580 conserved membrane protein of unknown function K08993 yhhL; putative membrane protein
D XDD1_2242 conserved protein of unknown function K09858 K09858; SEC-C motif domain protein
D XDD1_3638 malM; Maltose operon periplasmic protein K05775 malM; maltose operon periplasmic protein
D XDD1_1429 putative alkylphosphonate uptake protein in phosphonate metabolism K06193 phnA; protein PhnA
C 99997 Function unknown
D XDD1_3936 conserved membrane protein of unknown function K06872 K06872; uncharacterized protein
D XDD1_1482 Putative Haemolysin co-regulated protein (Putative Hcp) (fragment) K06887 K06887; uncharacterized protein
D XDD1_1683 putative Haemolysin co-regulated protein (putative Hcp) K06887 K06887; uncharacterized protein
D XDD1_3848 putative Hcp-like protein of Escherichia coli K06887 K06887; uncharacterized protein
D XDD1_2020 putative haemolysin co-regulated protein (hcp-like) K06887 K06887; uncharacterized protein
D XDD1_3080 putative Haemolysin co-regulated protein (putative Hcp) K06887 K06887; uncharacterized protein
D XDD1_3914 conserved protein of unknown function K06887 K06887; uncharacterized protein
D XDD1_3950 conserved protein of unknown function K06887 K06887; uncharacterized protein
D XDD1_p0011 protein of unknown function K06887 K06887; uncharacterized protein
D XDD1_3354 putative Haemolysin co-regulated protein (Hcp) K06887 K06887; uncharacterized protein
D XDD1_3567 putative Haemolysin co-regulated protein (putative Hcp) K06887 K06887; uncharacterized protein
D XDD1_3245 putative Haemolysin co-regulated protein (putative Hcp) K06887 K06887; uncharacterized protein
D XDD1_2273 putative haemolysin co-regulated protein (hcp-like) K06887 K06887; uncharacterized protein
D XDD1_1465 ybhL; Inner membrane protein ybhL K06890 K06890; uncharacterized protein
D XDD1_2915 W; Baseplate assembly protein W K06903 W; Bacteriophage baseplate protein W
D XDD1_2901 putative phage protein (D protein) (Modular protein) K06905 D; Bacteriophage probable baseplate hub protein
D XDD1_2902 Putative phage tail protein K06906 gpU; phage tail protein
D XDD1_2907 FI; Major tail sheath protein K06907 FI; Bacteriophage tail sheath protein
D XDD1_2906 FII; Major tail tube protein K06908 FII; Bacteriophage tail tube protein
D XDD1_1879 conserved protein of unknown function K06918 K06918; uncharacterized protein
D XDD1_1636 conserved protein of unknown function K06929 K06929; uncharacterized protein
D XDD1_1862 conserved protein of unknown function K06938 K06938; uncharacterized protein
D XDD1_2802 conserved protein of unknown function K06950 K06950; uncharacterized protein
D XDD1_1750 ydjN; Uncharacterized symporter ydjN K06956 K06956; uncharacterized protein
D XDD1_0656 conserved protein of unknown function K06995 K06995; uncharacterized protein
D XDD1_3398 yqiA; Esterase yqiA K07000 K07000; uncharacterized protein
D XDD1_2543 yejM; Inner membrane protein yejM K07014 K07014; uncharacterized protein
D XDD1_0761 yaaH; Inner membrane protein yaaH K07034 K07034; uncharacterized protein
D XDD1_3659 conserved protein of unknown function K07070 K07070; uncharacterized protein
D XDD1_2659 yfcH; Epimerase family protein yfcH K07071 K07071; uncharacterized protein
D XDD1_1988 TRAP-type transport system substrate-binding protein K07080 K07080; uncharacterized protein
D XDD1_3135 conserved membrane protein of unknown function K07090 K07090; uncharacterized protein
D XDD1_2634 conserved membrane protein of unknown function K07090 K07090; uncharacterized protein
D XDD1_0440 conserved exported protein of unknown function K07109 K07109; uncharacterized protein
D XDD1_3491 conserved exported protein of unknown function K07121 K07121; uncharacterized protein
D XDD1_3378 conserved protein of unknown function K07126 K07126; uncharacterized protein
D XDD1_3379 conserved exported protein of unknown function K07126 K07126; uncharacterized protein
D XDD1_2059 yecN; Inner membrane protein yecN K07136 K07136; uncharacterized protein
D XDD1_1598 conserved protein of unknown function K07140 K07140; MOSC domain-containing protein
D XDD1_1439 conserved membrane protein of unknown function K07148 K07148; uncharacterized protein
D XDD1_3973 conserved protein of unknown function K08998 K08998; uncharacterized protein
D XDD1_1266 conserved protein of unknown function K09158 K09158; uncharacterized protein
D XDD1_2092 conserved protein of unknown function K09160 K09160; uncharacterized protein
D XDD1_3624 conserved protein of unknown function K09702 K09702; uncharacterized protein
D XDD1_1579 conserved protein of unknown function K09791 K09791; uncharacterized protein
D XDD1_2899 conserved protein of unknown function K09794 K09794; uncharacterized protein
D XDD1_0614 putative periplasmic protein K09795 K09795; uncharacterized protein
D XDD1_0149 conserved exported protein of unknown function K09798 K09798; uncharacterized protein
D XDD1_2826 conserved protein of unknown function K09801 K09801; uncharacterized protein
D XDD1_2513 conserved protein of unknown function K09802 K09802; uncharacterized protein
D XDD1_p0009 conserved protein of unknown function K09803 K09803; uncharacterized protein
D XDD1_2986 conserved exported protein of unknown function K09807 K09807; uncharacterized protein
D XDD1_3479 conserved protein of unknown function K09824 virK; uncharacterized protein
D XDD1_1178 putative Similar to exported protein K05952 K05952; uncharacterized protein
D XDD1_1603 ymbA; Uncharacterized lipoprotein ymbA K09857 K09857; uncharacterized protein
D XDD1_0777 conserved protein of unknown function K09861 K09861; uncharacterized protein
D XDD1_3611 conserved protein of unknown function K09891 K09891; uncharacterized protein
D XDD1_3841 yihI; Der GTPase-activating protein YihI K09894 K09894; uncharacterized protein
D XDD1_2978 conserved protein of unknown function K09895 K09895; uncharacterized protein
D XDD1_3675 yihD; Protein yihD K09896 K09896; uncharacterized protein
D XDD1_0327 conserved protein of unknown function K09897 K09897; uncharacterized protein
D XDD1_3665 conserved protein of unknown function K09898 K09898; uncharacterized protein
D XDD1_2602 conserved protein of unknown function K09899 K09899; uncharacterized protein
D XDD1_2229 conserved protein of unknown function K09901 K09901; uncharacterized protein
D XDD1_2089 conserved protein of unknown function K09902 K09902; uncharacterized protein
D XDD1_2542 conserved protein of unknown function K09904 K09904; uncharacterized protein
D XDD1_3512 yhcB; putative cytochrome d ubiquinol oxidase subunit 3 K09908 K09908; uncharacterized protein
D XDD1_2990 conserved protein of unknown function K09910 K09910; uncharacterized protein
D XDD1_1606 conserved protein of unknown function K09911 K09911; uncharacterized protein
D XDD1_2252 conserved protein of unknown function K09916 K09916; uncharacterized protein
D XDD1_1735 conserved protein of unknown function K09917 K09917; uncharacterized protein
D XDD1_0369 conserved protein of unknown function K09921 K09921; uncharacterized protein
D XDD1_1137 conserved protein of unknown function K09923 K09923; uncharacterized protein
D XDD1_2446 conserved protein of unknown function K09930 K09930; uncharacterized protein
D XDD1_2460 conserved protein of unknown function K09946 K09946; uncharacterized protein
D XDD1_0920 conserved protein of unknown function K09973 K09973; uncharacterized protein
D XDD1_1984 conserved protein of unknown function K09975 K09975; uncharacterized protein
D XDD1_2099 conserved exported protein of unknown function K09978 K09978; uncharacterized protein
D XDD1_0497 conserved protein of unknown function K09979 K09979; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 12, 2024