+D GENES KO
#
KEGG Orthology (KO) - Yersinia pestis D106004
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:ypd00010]
D YPD4_2608 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D YPD4_3270 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YPD4_0072 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPD4_3234 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YPD4_0083 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D YPD4_3482 hypothetical protein K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPD4_0761 fbaA; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPD4_0079 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D YPD4_1896 glyceraldehyde 3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D YPD4_0760 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D YPD4_0986 gpmA; phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPD4_0394 gpmB; phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPD4_0060 phosphoglyceromutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D YPD4_2960 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YPD4_1824 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPD4_1457 pykF; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPD4_1443 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D YPD4_3003 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D YPD4_3002 aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D YPD4_3001 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPD4_3451 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPD4_2043 nifJ; putative pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D YPD4_1335 adhC; alcohol dehydrogenase class III; formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPD4_1917 aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D YPD4_0220 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPD4_0988 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D YPD4_0025 phosphatase K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10]
D YPD4_2344 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPD4_1895 hypothetical protein K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D YPD4_0119 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D YPD4_0147 putative glycosyl hydrolase K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D YPD4_1112 bglA; 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D YPD4_2624 crr; glucose-specific PTS system enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D YPD4_2122 ptsG; PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
C 00020 Citrate cycle (TCA cycle) [PATH:ypd00020]
D YPD4_0964 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D YPD4_1952 acnB; aconitate hydratase 2 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D YPD4_2999 acnB; aconitate hydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D YPD4_2092 icdA; isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D YPD4_0968 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D YPD4_0969 sucB; dihydrolipoamide acetyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D YPD4_3001 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPD4_3451 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPD4_0971 sucD; succinyl-CoA synthetase alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D YPD4_0970 sucC; succinyl-CoA synthetase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D YPD4_0966 sdhA; succinate dehydrogenase catalytic subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPD4_0967 sdhB; succinate dehydrogenase catalytic subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPD4_0965 sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D YPD4_0312 frdA; fumarate reductase K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPD4_0311 frdB; succinate dehydrogenase K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPD4_0310 frdC; fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D YPD4_0309 frdD; fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D YPD4_2923 fumA; fumarate hydratase, class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D YPD4_1990 fumC; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D YPD4_3237 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YPD4_0119 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D YPD4_3003 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D YPD4_3002 aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D YPD4_2043 nifJ; putative pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:ypd00030]
D YPD4_3270 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YPD4_1826 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D YPD4_0999 hypothetical protein K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D YPD4_1372 gnd; 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D YPD4_0136 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D YPD4_2903 C-terminal region of transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D YPD4_2904 putative N-terminal region of transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D YPD4_0757 tktA; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D YPD4_0403 talB; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D YPD4_1142 rpiA; putative ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D YPD4_0766 rpiA; ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D YPD4_2938 rpiB; ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D YPD4_3100 putative deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D YPD4_0375 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D YPD4_1173 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D YPD4_3099 carbohydrate kinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D YPD4_0008 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D YPD4_0378 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D YPD4_2344 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPD4_3047 phnN; PhnN protein K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23]
D YPD4_1776 prsA; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D YPD4_2478 edd; phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12]
D YPD4_1827 eda; keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D YPD4_3590 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D YPD4_3476 putative gluconokinase K00851 idnK; gluconokinase [EC:2.7.1.12]
D YPD4_2471 idnK; putative thermosensitive gluconokinase K00851 idnK; gluconokinase [EC:2.7.1.12]
D YPD4_3510 kdgK; 2-dehydro-3-deoxygluconokinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D YPD4_3482 hypothetical protein K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPD4_0761 fbaA; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPD4_3234 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YPD4_0083 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D YPD4_0072 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:ypd00040]
D YPD4_0364 putative pectinesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11]
D YPD4_3514 pelY; periplasmic pectate lyase precursor K01728 pel; pectate lyase [EC:4.2.2.2]
D YPD4_1533 pelW; exopolygalacturonate lyase K01731 pelW; pectate disaccharide-lyase [EC:4.2.2.9]
D YPD4_1523 ogl; oligogalacturonate lyase K01730 ogl; oligogalacturonide lyase [EC:4.2.2.6]
D YPD4_1536 kdgF; pectin degradation protein K26933 kdgF; unsaturated pyranuronate lyase [EC:4.2.99.25]
D YPD4_1535 kduI; 5-keto-4-deoxyuronate isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17]
D YPD4_1534 kduD1; 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127]
D YPD4_0831 kduD2; 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127]
D YPD4_0507 uxaC; uronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D YPD4_0508 uxaB; tagaturonate reductase K00041 uxaB; tagaturonate reductase [EC:1.1.1.58]
D YPD4_0509 altronate hydrolase K01685 uxaA; altronate hydrolase [EC:4.2.1.7]
D YPD4_1134 uxuA; mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8]
D YPD4_1133 putative D-mannonate oxidoreductase K00040 uxuB; fructuronate reductase [EC:1.1.1.57]
D YPD4_1912 putative nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D YPD4_1370 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPD4_1371 galF; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPD4_2922 sgbK; putative L-xylulose kinase K00880 lyxK; L-xylulokinase [EC:2.7.1.53]
D YPD4_2921 sgbU; putative hexulose-6-phosphate isomerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D YPD4_2915 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D YPD4_1959 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D YPD4_0136 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D YPD4_1979 araA; L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4]
D YPD4_1980 araB; ribulokinase K00853 araB; L-ribulokinase [EC:2.7.1.16]
D YPD4_1141 putative carbohydrate kinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D YPD4_3553 xylB; xylulose kinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D YPD4_3552 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D YPD4_0290 rhaB; rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D YPD4_0288 rhaD; rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
D YPD4_2035 dalD; putative mannitol dehydrogenase K00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11]
D YPD4_3483 hypothetical protein K09988 lyxA; D-lyxose ketol-isomerase [EC:5.3.1.15]
D YPD4_3114 putative carbohydrate kinase K00875 rbtK; D-ribulokinase [EC:2.7.1.47]
C 00051 Fructose and mannose metabolism [PATH:ypd00051]
D YPD4_2812 hypothetical protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D YPD4_1989 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D YPD4_2168 manB; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D YPD4_2717 manB; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D YPD4_2719 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D YPD4_2721 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D YPD4_2722 hypothetical protein K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D YPD4_2720 wcaG; nucleotide di-P-sugar epimerase or dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D YPD4_1396 hypothetical protein K18334 fucD; L-fuconate dehydratase [EC:4.2.1.68]
D YPD4_1394 putative oxidoreductase K18335 E1.1.1.434; 2-dehydro-3-deoxy-L-fuconate 4-dehydrogenase [EC:1.1.1.434]
D YPD4_1395 putative hydrolase K18336 lra6; 2,4-didehydro-3-deoxy-L-rhamnonate hydrolase [EC:3.7.1.26]
D YPD4_0289 L-rhamnose isomerase K01813 rhaA; L-rhamnose isomerase [EC:5.3.1.14]
D YPD4_0290 rhaB; rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D YPD4_0288 rhaD; rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
D YPD4_0072 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPD4_3234 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YPD4_0083 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D YPD4_3580 mtlD; mannitol-1-phosphate 5-dehydrogenase K00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17]
D YPD4_1148 fruK; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D YPD4_3552 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D YPD4_2035 dalD; putative mannitol dehydrogenase K00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11]
D YPD4_3482 hypothetical protein K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPD4_0761 fbaA; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPD4_0079 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D YPD4_2938 rpiB; ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D YPD4_1149 fruA; PTS system, fructose-specific IIBC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D YPD4_1556 manX; PTS system, mannose-specific IIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D YPD4_1555 PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D YPD4_1554 PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component
D YPD4_2451 haloacid dehalogenase-like hydrolase K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50]
D YPD4_1412 phosphatase K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68]
C 00052 Galactose metabolism [PATH:ypd00052]
D YPD4_0988 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D YPD4_0989 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D YPD4_0990 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D YPD4_0991 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YPD4_1370 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPD4_1371 galF; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPD4_2344 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPD4_2608 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D YPD4_2082 lacZ; beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D YPD4_0818 bgaB; puative beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D YPD4_1409 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D YPD4_0072 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPD4_0826 agaY; tagatose 1,6-diphosphate aldolase K08302 gatY-kbaY; tagatose 1,6-diphosphate aldolase GatY/KbaY [EC:4.1.2.40]
D YPD4_0838 agaZ; putative tagatose 6-phosphate kinase K16371 gatZ-kbaZ; D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ
D YPD4_0822 glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D YPD4_2804 malZ; putative maltodextrin glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D YPD4_0833 hypothetical protein K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D YPD4_0836 PTS transport protein K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D YPD4_0835 putative PTS permease protein K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D YPD4_0834 PTS permease protein K02747 agaE; N-acetylgalactosamine PTS system EIID component
D YPD4_0832 putative acetylglucosamine-6-phosphate deacetylase K02079 agaA; N-acetylgalactosamine-6-phosphate deacetylase [EC:3.5.1.25]
D YPD4_0837 putative phosphosugar isomerase K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-]
C 00053 Ascorbate and aldarate metabolism [PATH:ypd00053]
D YPD4_1912 putative nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D YPD4_2445 phosphotransferase enzyme II, A component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D YPD4_2508 ulaA; ascorbate-specific PTS system enzyme IIC K03475 ulaA; ascorbate PTS system EIIC component
D YPD4_2921 sgbU; putative hexulose-6-phosphate isomerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D YPD4_2915 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D YPD4_1959 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D YPD4_2922 sgbK; putative L-xylulose kinase K00880 lyxK; L-xylulokinase [EC:2.7.1.53]
C 00500 Starch and sucrose metabolism [PATH:ypd00500]
D YPD4_0822 glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D YPD4_2804 malZ; putative maltodextrin glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D YPD4_1370 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPD4_1371 galF; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPD4_2495 bglB; putative beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPD4_0538 putative glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPD4_2348 celC; PTS system, cellobiose-specific IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D YPD4_2350 celA; PTS system, cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D YPD4_2349 celB; PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D YPD4_0147 putative glycosyl hydrolase K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D YPD4_1112 bglA; 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D YPD4_2732 ddhA; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D YPD4_3468 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D YPD4_3467 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D YPD4_3470 glgB; glycogen branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D YPD4_3466 glgP; glycogen phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D YPD4_0109 Glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D YPD4_3469 glgX; glycogen debranching enzyme K02438 glgX; glycogen debranching enzyme [EC:3.2.1.196]
D YPD4_3591 malS; periplasmic alpha-amylase precursor K01176 AMY; alpha-amylase [EC:3.2.1.1]
D YPD4_0110 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D YPD4_2624 crr; glucose-specific PTS system enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D YPD4_3168 treB; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D YPD4_3167 treC; putative trehalose-6-phosphate hydrolase K01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93]
D YPD4_2344 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPD4_2608 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D YPD4_3270 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YPD4_2812 hypothetical protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:ypd00520]
D YPD4_2115 nagZ; beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D YPD4_2387 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D YPD4_2624 crr; glucose-specific PTS system enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D YPD4_2104 hypothetical protein K00884 NAGK; N-acetylglucosamine kinase [EC:2.7.1.59]
D YPD4_2395 putative acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D YPD4_2394 nagB; glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D YPD4_2812 hypothetical protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D YPD4_3625 glmS; D-fructose-6-phosphate amidotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D YPD4_3251 mrsA; probable phosphoglucomutase/phosphomannomutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D YPD4_3626 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D YPD4_2304 hypothetical protein K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D YPD4_1477 hypothetical protein K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D YPD4_3188 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D YPD4_3310 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D YPD4_2646 N-acetylmannosamine kinase K00885 nanK; N-acylmannosamine kinase [EC:2.7.1.60]
D YPD4_2649 hypothetical protein K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9]
D YPD4_2650 probable N-acetylneuraminate lyase K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3]
D YPD4_3410 rffE; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D YPD4_3409 rffD; putative UDP-glucose/GDP-mannose dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D YPD4_1432 hypothetical protein K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305]
D YPD4_1430 hypothetical protein K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D YPD4_1431 glycosyl transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D YPD4_1433 hypothetical protein K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D YPD4_2122 ptsG; PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D YPD4_2608 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D YPD4_2344 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPD4_1370 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPD4_1371 galF; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPD4_1912 putative nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D YPD4_0989 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D YPD4_0990 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D YPD4_0991 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YPD4_1556 manX; PTS system, mannose-specific IIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D YPD4_1555 PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D YPD4_1554 PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component
D YPD4_3270 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YPD4_1989 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D YPD4_2168 manB; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D YPD4_2717 manB; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D YPD4_2719 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D YPD4_2721 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D YPD4_2722 hypothetical protein K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D YPD4_2720 wcaG; nucleotide di-P-sugar epimerase or dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D YPD4_2732 ddhA; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D YPD4_2731 CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D YPD4_2730 ddhC; putative CDP-4-keto-6-deoxy-D-glucose-3-dehydratase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D YPD4_2733 ddhD; CDP-6-deoxy-delta-3,4-glucoseen reductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D YPD4_2729 prt; paratose synthase K12453 rfbS; CDP-paratose synthetase [EC:1.1.1.342]
D YPD4_3468 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:ypd00620]
D YPD4_0220 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPD4_2043 nifJ; putative pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D YPD4_3003 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D YPD4_3002 aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D YPD4_3001 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPD4_3451 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPD4_1226 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D YPD4_1917 aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D YPD4_1335 adhC; alcohol dehydrogenase class III; formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPD4_2448 ackA; acetate/propionate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D YPD4_2447 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YPD4_1824 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPD4_1457 pykF; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPD4_0927 accA; acetyl-CoA carboxylase alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D YPD4_3132 accB; acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D YPD4_3131 accC; acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D YPD4_2522 accD; acetyl-CoA carboxylase beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D YPD4_1397 lldD; L-lactate dehydrogenase K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D YPD4_1203 poxB; pyruvate dehydrogenase K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1]
D YPD4_2038 ldhA; D-lactate dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D YPD4_1046 D-lactate dehydrogenase K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12]
D YPD4_1469 gloA; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D YPD4_0944 gloB; hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D YPD4_1251 metallo-beta-lactamase superfamily protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D YPD4_3590 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D YPD4_1344 sfcA; NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D YPD4_2659 phosphate acetyltransferase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D YPD4_3237 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YPD4_2923 fumA; fumarate hydratase, class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D YPD4_1990 fumC; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D YPD4_0312 frdA; fumarate reductase K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPD4_0311 frdB; succinate dehydrogenase K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPD4_0310 frdC; fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D YPD4_0309 frdD; fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D YPD4_3461 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D YPD4_0119 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D YPD4_1443 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D YPD4_3280 aceB; malate synthase K01638 aceB; malate synthase [EC:2.3.3.9]
D YPD4_0468 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:ypd00630]
D YPD4_3279 aceA; isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1]
D YPD4_0220 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPD4_3280 aceB; malate synthase K01638 aceB; malate synthase [EC:2.3.3.9]
D YPD4_3237 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YPD4_0964 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D YPD4_1952 acnB; aconitate hydratase 2 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D YPD4_2999 acnB; aconitate hydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D YPD4_1073 catalase K03781 katE; catalase [EC:1.11.1.6]
D YPD4_3590 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D YPD4_0137 gph; phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D YPD4_0023 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPD4_2288 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YPD4_0776 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D YPD4_0774 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D YPD4_3001 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPD4_3451 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPD4_0775 gcsH; glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein
D YPD4_3501 glxK; putative glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D YPD4_2181 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D YPD4_1827 eda; keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D YPD4_3571 hypothetical protein K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D YPD4_3572 Twin-arginine translocation pathway signal K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D YPD4_3570 fdoH; formate dehydrogenase-O, iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D YPD4_3569 fdoI; formate dehydrogenase, cytochrome b556 protein K00127 fdoI; formate dehydrogenase subunit gamma
D YPD4_1909 hypothetical protein K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D YPD4_1735 hutG; putative N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
C 00640 Propanoate metabolism [PATH:ypd00640]
D YPD4_0220 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPD4_2448 ackA; acetate/propionate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D YPD4_2447 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YPD4_3001 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPD4_3451 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPD4_1226 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D YPD4_3136 probable zinc-binding dehydrogenase K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D YPD4_3315 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPD4_2542 faoA; putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPD4_0927 accA; acetyl-CoA carboxylase alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D YPD4_3132 accB; acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D YPD4_3131 accC; acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D YPD4_2522 accD; acetyl-CoA carboxylase beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D YPD4_2230 goaG; 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D YPD4_0970 sucC; succinyl-CoA synthetase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D YPD4_0971 sucD; succinyl-CoA synthetase alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D YPD4_2439 putative aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D YPD4_2999 acnB; aconitate hydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D YPD4_1281 mgsA; methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
D YPD4_0588 putative iron-containing alcohol dehydrogenase K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-]
C 00650 Butanoate metabolism [PATH:ypd00650]
D YPD4_3315 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPD4_2542 faoA; putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPD4_3612 hypothetical protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D YPD4_1917 aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D YPD4_2181 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D YPD4_0966 sdhA; succinate dehydrogenase catalytic subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPD4_0967 sdhB; succinate dehydrogenase catalytic subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPD4_0965 sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D YPD4_0312 frdA; fumarate reductase K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPD4_0311 frdB; succinate dehydrogenase K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPD4_0310 frdC; fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D YPD4_0309 frdD; fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D YPD4_2230 goaG; 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D YPD4_3159 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPD4_1140 putative aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPD4_1226 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D YPD4_2043 nifJ; putative pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D YPD4_1294 putative hydroxymethylglutaryl-coenzyme A synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D YPD4_3435 ilvG; acetolactate synthase II large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPD4_0471 acetolactate synthase isozyme III large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPD4_2007 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPD4_0472 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPD4_2008 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:ypd00660]
D YPD4_3435 ilvG; acetolactate synthase II large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPD4_0471 acetolactate synthase isozyme III large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPD4_2007 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPD4_0472 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPD4_2008 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPD4_1693 cat2; 4-hydroxybutyrate coenzyme A transferase K18288 ict-Y; itaconate CoA-transferase [EC:2.8.3.-]
D YPD4_0970 sucC; succinyl-CoA synthetase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D YPD4_0971 sucD; succinyl-CoA synthetase alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D YPD4_1694 putative transcription regulatory protein K18290 ich-Y; itaconyl-CoA hydratase [EC:4.2.1.56]
D YPD4_1695 putative citrate lyase beta chain K18292 E4.1.3.25; (S)-citramalyl-CoA lyase [EC:4.1.3.25]
D YPD4_0076 hypothetical protein K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D YPD4_0466 leuC; isopropylmalate isomerase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D YPD4_0465 leuD; isopropylmalate isomerase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D YPD4_0467 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:ypd00562]
D YPD4_2280 putative inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D YPD4_2087 probable histidine acid phosphatase K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2]
D YPD4_2437 hypothetical protein K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D YPD4_2430 myo-inositol catabolism protein iolB K03335 iolE; inosose dehydratase [EC:4.2.1.44]
D YPD4_2438 putative thiamine pyrophosphate-dependent protein K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22]
D YPD4_2429 hypothetical protein K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30]
D YPD4_2431 rbsK2; putative carbohydrate kinase K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92]
D YPD4_2439 putative aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D YPD4_0079 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:ypd00190]
D YPD4_2456 nuoA; NADH dehydrogenase alpha subunit K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D YPD4_2457 nuoB; NADH dehydrogenase beta subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D YPD4_2458 nuoD; NADH dehydrogenase I chain C/D K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2]
D YPD4_2459 nuoE; ATP synthase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D YPD4_2460 nuoF; NADH dehydrogenase I chain F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D YPD4_2461 nuoG; NADH dehydrogenase gamma subunit K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D YPD4_2462 nuoH; NADH dehydrogenase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D YPD4_2463 nuoI; NADH dehydrogenase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D YPD4_2464 nuoJ; NADH dehydrogenase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D YPD4_2465 nuoK; NADH dehydrogenase kappa subunit K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D YPD4_2466 nuoL; NADH dehydrogenase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D YPD4_2467 nuoM; NADH dehydrogenase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D YPD4_2468 nuoN; NADH dehydrogenase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D YPD4_2113 NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D YPD4_0966 sdhA; succinate dehydrogenase catalytic subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPD4_0967 sdhB; succinate dehydrogenase catalytic subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPD4_0965 sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D YPD4_0312 frdA; fumarate reductase K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPD4_0311 frdB; succinate dehydrogenase K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPD4_0310 frdC; fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D YPD4_0309 frdD; fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D YPD4_2778 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D YPD4_2777 cyoD; cytochrome O ubiquinol oxidase subunit CyoD K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV
D YPD4_2776 cytochrome O ubiquinol oxidase subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III
D YPD4_2775 cyoB; cytochrome O ubiquinol oxidase subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3]
D YPD4_2774 cyoA; cytochrome O ubiquinol oxidase subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3]
D YPD4_0972 cydA; cytochrome D ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D YPD4_0973 cydB; cytochrome D ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D YPD4_3630 atpA; ATP synthase subunit A K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D YPD4_3628 ATP synthase beta subunit protein K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D YPD4_3629 atpG; ATP synthase subunit C K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D YPD4_3631 atpH; ATP synthase subunit D K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D YPD4_3627 atpC; ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D YPD4_3633 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D YPD4_3632 atpF; ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D YPD4_3233 ppa; inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D YPD4_2222 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:ypd00680]
D YPD4_1335 adhC; alcohol dehydrogenase class III; formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPD4_1334 putative esterase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D YPD4_3571 hypothetical protein K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D YPD4_3572 Twin-arginine translocation pathway signal K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D YPD4_3570 fdoH; formate dehydrogenase-O, iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D YPD4_3569 fdoI; formate dehydrogenase, cytochrome b556 protein K00127 fdoI; formate dehydrogenase subunit gamma
D YPD4_0299 fdhF; formate dehydrogenase H K22015 fdhF; formate dehydrogenase (hydrogenase) [EC:1.17.98.4 1.17.98.-]
D YPD4_2288 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YPD4_2960 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YPD4_3461 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D YPD4_3237 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YPD4_3482 hypothetical protein K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPD4_0761 fbaA; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPD4_3234 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YPD4_0083 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D YPD4_0072 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPD4_2151 hypothetical protein K10713 fae; 5,6,7,8-tetrahydromethanopterin hydro-lyase [EC:4.2.1.147]
D YPD4_2448 ackA; acetate/propionate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D YPD4_2447 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YPD4_0220 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPD4_1443 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D YPD4_0986 gpmA; phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPD4_0394 gpmB; phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPD4_0060 phosphoglyceromutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D YPD4_0767 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPD4_1138 D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPD4_1233 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YPD4_0381 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:ypd00910]
D YPD4_2663 napA; periplasmic nitrate reductase precursor K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D YPD4_2662 napB; cytochrome C-type protein NapB precursor K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D YPD4_0142 nirB; nitrite reductase K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
D YPD4_0141 nirD; nitrite reductase small subunit K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
D YPD4_1205 hcp; hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D YPD4_3493 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D YPD4_0023 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPD4_3200 glutamate synthase (NADPH) large chain precursor K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D YPD4_3199 gltD; glutamate synthase [NADPH] small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D YPD4_2991 putative carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D YPD4_0847 putative carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:ypd00920]
D YPD4_2642 cysP; thiosulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D YPD4_0073 sbp1; exported sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D YPD4_2641 cysT; sulfate transport system permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D YPD4_2640 cysW; sulfate transport system permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D YPD4_2639 cysA; sulfate transport ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D YPD4_0159 tauA; putative taurine-binding periplasmic protein precursor K15551 tauA; taurine transport system substrate-binding protein
D YPD4_0161 tauC; putative taurine transport system permease protein K15552 tauC; taurine transport system permease protein
D YPD4_0160 tauB; putative taurine transport ATP-binding protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D YPD4_0162 tauD; putative taurine dioxygenase K03119 tauD; taurine dioxygenase [EC:1.14.11.17]
D YPD4_3102 ssuA; solute-binding periplasmic protein of aliphatic sulfonates, ABC transporter K15553 ssuA; sulfonate transport system substrate-binding protein
D YPD4_3104 ssuC; putative aliphatic sulfonates transport permease protein K15554 ssuC; sulfonate transport system permease protein
D YPD4_3105 ssuB; putative aliphatic sulfonates transport ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D YPD4_3103 ssuD; alkanesulfonate monooxygenase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34]
D YPD4_3101 ssuE; NAD(P)H-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D YPD4_2950 cysN; sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D YPD4_2951 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D YPD4_2949 cysC; adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D YPD4_3226 inositol monophosphatase family protein K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D YPD4_2954 hypothetical protein K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D YPD4_2956 cysJ; sulfite reductase [NADPH] flavoprotein alpha-component K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D YPD4_2955 cysI; sulfite reductase [NADPH] hemoprotein beta-component K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D YPD4_1062 putative sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D YPD4_0106 glpE; thiosulfate sulfurtransferase K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1]
D YPD4_0064 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D YPD4_2758 putative Pyridoxal-phosphate dependent protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YPD4_2622 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YPD4_3536 pyridoxal-phosphate dependent protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YPD4_3281 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D YPD4_0099 hypothetical protein K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D YPD4_2914 dmsA; anaerobic dimethyl sulfoxide reductase chain A K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D YPD4_2596 dmsA; putative dimethyl sulfoxide reductase chain A protein K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D YPD4_2913 dmsB; anaerobic dimethyl sulfoxide reductase chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D YPD4_2597 dmsB; putative dimethyl sulfoxide reductase chain B protein K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D YPD4_2912 dmsC; anaerobic dimethyl sulfoxide reductase chain C K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
D YPD4_2598 dmsC; putative dimethyl sulfoxide reductase chain C protein K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:ypd00061]
D YPD4_0927 accA; acetyl-CoA carboxylase alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D YPD4_3132 accB; acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D YPD4_3131 accC; acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D YPD4_2522 accD; acetyl-CoA carboxylase beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D YPD4_2131 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPD4_1299 putative acyl transferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPD4_1741 hypothetical protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YPD4_1742 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YPD4_2132 fabH; 3-oxoacyl-(acyl carrier protein) synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YPD4_1292 putative beta-ketoacyl-[acyl-carrier-protein] synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPD4_2532 fabB; 3-oxoacyl-(acyl carrier protein) synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPD4_2129 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPD4_1267 fabF; 3-oxoacyl-(acyl carrier protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPD4_2130 3-oxoacyl-(acyl-carrier protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPD4_1293 oxidoreductase, short chain dehydrogenase/reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPD4_1271 fabA; 3-hydroxydecanoyl-ACP dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D YPD4_1291 fabZ; myristoyl-acyl carrier dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPD4_0922 fabZ; (3R)-hydroxymyristoyl ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPD4_3612 hypothetical protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D YPD4_0470 AMP binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPD4_1834 long-chain-fatty-acid-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:ypd00071]
D YPD4_3316 fadA; acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPD4_2543 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPD4_3315 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPD4_2542 faoA; putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPD4_2838 fadE; acyl-CoA dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D YPD4_0470 AMP binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPD4_1834 long-chain-fatty-acid-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPD4_0870 aas; 2-acyl-glycerophospho-ethanolamine acyltransferase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D YPD4_1335 adhC; alcohol dehydrogenase class III; formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPD4_1917 aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:ypd00561]
D YPD4_3501 glxK; putative glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D YPD4_2935 dihydroxyacetone kinase K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121]
D YPD4_2934 hypothetical protein K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121]
D YPD4_0084 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D YPD4_2902 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D YPD4_0274 plsB; glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D YPD4_2133 fatty acid/phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D YPD4_0559 hypothetical protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D YPD4_0583 acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D YPD4_0275 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D YPD4_1409 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00564 Glycerophospholipid metabolism [PATH:ypd00564]
D YPD4_0063 gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D YPD4_3372 glpA; anaerobic glycerol-3-phosphate dehydrogenase subunit A K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D YPD4_3465 aerobic glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D YPD4_3371 glpB; anaerobic glycerol-3-phosphate dehydrogenase subunit B K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3]
D YPD4_3370 glpC; anaerobic glycerol-3-phosphate dehydrogenase subunit C K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C
D YPD4_0274 plsB; glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D YPD4_0559 hypothetical protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D YPD4_0583 acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D YPD4_0275 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D YPD4_3380 pldA; phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D YPD4_3376 pldB; putative lysophospholipase K01048 pldB; lysophospholipase [EC:3.1.1.5]
D YPD4_3373 glpQ; glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D YPD4_3339 ugpQ; cytoplasmic glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D YPD4_0870 aas; 2-acyl-glycerophospho-ethanolamine acyltransferase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D YPD4_3507 cdh; CDP-diacylglycerol pyrophosphatase K01521 cdh; CDP-diacylglycerol pyrophosphatase [EC:3.6.1.26]
D YPD4_2208 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D YPD4_0916 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D YPD4_2865 CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D YPD4_0315 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D YPD4_1653 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D YPD4_2787 pgpA; phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D YPD4_1954 pgpB; phosphatidylglycerophosphatase B K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27]
D YPD4_2303 hypothetical protein K18697 pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27]
D YPD4_1926 cls; cardiolipin synthetase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism [PATH:ypd00565]
D YPD4_3380 pldA; phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00600 Sphingolipid metabolism [PATH:ypd00600]
D YPD4_1747 putative glycosyl transferase K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80]
D YPD4_2082 lacZ; beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D YPD4_1409 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D YPD4_2387 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
D YPD4_3380 pldA; phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00591 Linoleic acid metabolism
D YPD4_3380 pldA; phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00592 alpha-Linolenic acid metabolism [PATH:ypd00592]
D YPD4_3380 pldA; phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D YPD4_3316 fadA; acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPD4_2543 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:ypd01040]
D YPD4_2702 acyl-CoA thioesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D YPD4_2752 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D YPD4_1930 putative acyl-CoA thioester hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:ypd00230]
D YPD4_0575 putative MutT-family protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D YPD4_0124 putative hydrolase K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-]
D YPD4_0378 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D YPD4_2344 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPD4_1776 prsA; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D YPD4_2518 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D YPD4_3283 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D YPD4_2215 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D YPD4_1572 purT; 5-phosphoribosylglycinamide transformylase K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D YPD4_2300 purL; phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D YPD4_2214 purI; phosphoribosylaminoimidazole synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D YPD4_2698 purK; phosphoribosylaminoimidazole carboxylase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D YPD4_2697 purE; phosphoribosylaminoimidazole carboxylase catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D YPD4_2682 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D YPD4_2097 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D YPD4_3282 PurH protein: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D YPD4_2740 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D YPD4_3537 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D YPD4_2712 Protein ushA precursor:UDP-sugar hydrolase; 5-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D YPD4_2943 stationary-phase survival protein K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D YPD4_2397 nagD; putative N-acetylglucosamine metabolism protein K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D YPD4_0122 hypothetical protein K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-]
D YPD4_2715 inosine-guanosine kinase K00892 gsk; inosine kinase [EC:2.7.1.73]
D YPD4_1020 xapA; purine nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D YPD4_0379 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D YPD4_2870 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D YPD4_2992 hpt; hypoxanthine-guanine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D YPD4_2253 guaB; inositol-5-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D YPD4_2264 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D YPD4_0393 hypothetical protein K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73]
D YPD4_0739 hypothetical protein K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D YPD4_2822 gpt; xanthine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D YPD4_2252 guaA; bifunctional GMP synthase/glutamine amidotransferase protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D YPD4_3012 guaC; guanosine 5-monophosphate oxidoreductase K00364 guaC; GMP reductase [EC:1.7.1.7]
D YPD4_0038 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D YPD4_2375 nrdE; ribonucleotide-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPD4_1079 nrdA; ribonucleotide-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPD4_1078 nrdB; ribonucleotide-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YPD4_2376 nrdF; ribonucleotide-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YPD4_3037 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D YPD4_2967 dgt; deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D YPD4_2453 hypothetical protein K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D YPD4_0037 spoT; guanosine-3,5-bisbis(diphosphate) 3-pyrophosphydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D YPD4_3416 Guanosine-5-triphosphate,3-diphosphate diphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D YPD4_2223 ppx; putative exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D YPD4_2963 relA; GTP pyrophosphokinase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D YPD4_3394 cyaA; adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1]
D YPD4_1047 cyaB; adenylate cyclase 2 K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1]
D YPD4_2335 hypothetical protein K01120 cpdP; 3',5'-cyclic-nucleotide phosphodiesterase [EC:3.1.4.17]
D YPD4_0328 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D YPD4_2002 amn; AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4]
D YPD4_0898 hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D YPD4_3225 2,3-cyclic-nucleotide 2-phosphodiesterase precursor K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D YPD4_2735 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D YPD4_2962 hypothetical protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D YPD4_0577 icc; Icc-like protein K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D YPD4_0427 apaH; diadenosinetetraphosphatase K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D YPD4_2949 cysC; adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D YPD4_2950 cysN; sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D YPD4_2951 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D YPD4_2380 hypothetical protein K16842 hpxB; allantoinase [EC:3.5.2.5]
D YPD4_2843 N-carbamoyl-L-amino acid amidohydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9]
D YPD4_2847 hypothetical protein K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112]
D YPD4_2361 ureC; urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D YPD4_2362 ureB; urease (urea amidohydrolase) beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D YPD4_2363 ureA; urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D YPD4_2853 amidase K22601 hpxY; oxamate carbamoyltransferase [EC:2.1.3.5]
C 00240 Pyrimidine metabolism [PATH:ypd00240]
D YPD4_0420 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D YPD4_0419 carA; carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D YPD4_3173 pyrB; aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D YPD4_3172 aspartate carbamoyltransferase regulatory chain K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D YPD4_2140 pyrC; dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D YPD4_1258 pyrD; dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D YPD4_0043 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D YPD4_1957 pyrF; orotidine 5-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D YPD4_0912 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D YPD4_2264 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D YPD4_2962 hypothetical protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D YPD4_3141 maf; Maf-like protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D YPD4_0514 hypothetical protein K07043 upp; UTP pyrophosphatase [EC:3.6.1.-]
D YPD4_2961 pyrG; CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D YPD4_1235 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D YPD4_1905 nudG; putative pyrophosphohydrolase K08320 nudG; (d)CTP diphosphatase [EC:3.6.1.65]
D YPD4_1355 udk; uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D YPD4_2712 Protein ushA precursor:UDP-sugar hydrolase; 5-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D YPD4_2943 stationary-phase survival protein K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D YPD4_2397 nagD; putative N-acetylglucosamine metabolism protein K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D YPD4_2009 nucleotidase K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-]
D YPD4_3334 udp; uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D YPD4_2213 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D YPD4_3225 2,3-cyclic-nucleotide 2-phosphodiesterase precursor K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D YPD4_0898 hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D YPD4_1345 cdd; cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D YPD4_0143 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D YPD4_3037 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D YPD4_1356 dcd; deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D YPD4_2375 nrdE; ribonucleotide-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPD4_1079 nrdA; ribonucleotide-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPD4_1078 nrdB; ribonucleotide-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YPD4_2376 nrdF; ribonucleotide-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YPD4_2453 hypothetical protein K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D YPD4_2125 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D YPD4_0045 dut; deoxyuridine 5-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D YPD4_0376 hypothetical protein K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D YPD4_0377 Thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D YPD4_1914 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D YPD4_0877 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:ypd00250]
D YPD4_1252 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPD4_2321 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D YPD4_1900 ansA; cytoplasmic asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D YPD4_1230 ansB; putative L-asparaginase II precursor K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D YPD4_0003 asnA; asparagine synthetase AsnA K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D YPD4_2398 asnB; asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D YPD4_2454 aat; aspartate aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D YPD4_0302 aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D YPD4_1398 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D YPD4_3457 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D YPD4_0328 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D YPD4_2097 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D YPD4_3173 pyrB; aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D YPD4_3172 aspartate carbamoyltransferase regulatory chain K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D YPD4_2230 goaG; 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D YPD4_3159 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPD4_1140 putative aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPD4_3200 glutamate synthase (NADPH) large chain precursor K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D YPD4_3199 gltD; glutamate synthase [NADPH] small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D YPD4_3493 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D YPD4_1641 putA; bifunctional PutA protein (includes: proline dehydrogenase and delta-1-pyrroline-5-carboxylate) K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D YPD4_0023 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPD4_0420 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D YPD4_0419 carA; carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D YPD4_0735 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPD4_1706 putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPD4_3625 glmS; D-fructose-6-phosphate amidotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D YPD4_2518 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:ypd00260]
D YPD4_3271 lysC; aspartate kinase III K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YPD4_0398 bifunctional aspartokinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D YPD4_0100 metL; bifunctional aspartate kinase II/homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D YPD4_3473 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YPD4_0400 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D YPD4_0401 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D YPD4_1202 ltaA; L-allo-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D YPD4_2288 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YPD4_3590 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D YPD4_3501 glxK; putative glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D YPD4_0986 gpmA; phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPD4_0394 gpmB; phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPD4_0060 phosphoglyceromutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D YPD4_0767 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPD4_1138 D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPD4_1233 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YPD4_0381 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D YPD4_0055 kbl; 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D YPD4_0056 tdh; L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103]
D YPD4_0776 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D YPD4_0774 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D YPD4_3001 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPD4_3451 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPD4_0775 gcsH; glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein
D YPD4_2865 CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D YPD4_1014 betA; choline dehydrogenase K00108 betA; choline dehydrogenase [EC:1.1.99.1]
D YPD4_1015 betB; betaine aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]
D YPD4_1569 L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D YPD4_3432 ilvA; threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D YPD4_3600 hypothetical protein K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D YPD4_2531 resistance protein K25316 racX; amino-acid racemase [EC:5.1.1.10]
D YPD4_2054 alr; alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D YPD4_1937 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D YPD4_1938 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D YPD4_1360 putative decarboxylase K13745 ddc; L-2,4-diaminobutyrate decarboxylase [EC:4.1.1.86]
C 00270 Cysteine and methionine metabolism [PATH:ypd00270]
D YPD4_0064 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D YPD4_2758 putative Pyridoxal-phosphate dependent protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YPD4_2622 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YPD4_3536 pyridoxal-phosphate dependent protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YPD4_0242 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPD4_0591 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPD4_2633 putative aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPD4_3275 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D YPD4_3336 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D YPD4_0753 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D YPD4_2996 speD; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D YPD4_2995 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D YPD4_2147 N-acylhomoserine lactone synthase YpeI K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184]
D YPD4_0709 ytbI; N-acylhomoserine lactone synthase YtbI K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184]
D YPD4_2968 mtn; 5-methylthioadenosine/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D YPD4_2870 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D YPD4_0282 tyrB; aspartate aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D YPD4_1512 hypothetical protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D YPD4_2891 luxS; S-ribosylhomocysteinase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D YPD4_3271 lysC; aspartate kinase III K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YPD4_0398 bifunctional aspartokinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D YPD4_0100 metL; bifunctional aspartate kinase II/homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D YPD4_3473 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YPD4_3281 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D YPD4_0099 hypothetical protein K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D YPD4_3434 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YPD4_2892 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D YPD4_0749 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D YPD4_1252 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPD4_1062 putative sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D YPD4_2531 resistance protein K25316 racX; amino-acid racemase [EC:5.1.1.10]
D YPD4_2054 alr; alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D YPD4_1636 D-cysteine desulfhydrase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]
D YPD4_3237 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YPD4_1569 L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D YPD4_2638 cysM; cysteine synthase B K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D YPD4_0767 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPD4_1138 D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPD4_1233 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:ypd00280]
D YPD4_3434 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YPD4_3001 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPD4_3451 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPD4_3315 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPD4_2542 faoA; putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPD4_3316 fadA; acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPD4_2543 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPD4_2439 putative aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D YPD4_1294 putative hydroxymethylglutaryl-coenzyme A synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:ypd00290]
D YPD4_3432 ilvA; threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D YPD4_3600 hypothetical protein K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D YPD4_0466 leuC; isopropylmalate isomerase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D YPD4_0465 leuD; isopropylmalate isomerase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D YPD4_0467 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D YPD4_3435 ilvG; acetolactate synthase II large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPD4_0471 acetolactate synthase isozyme III large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPD4_2007 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPD4_0472 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPD4_2008 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPD4_3426 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D YPD4_3433 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D YPD4_3434 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YPD4_3593 aminotransferase, classes I and II K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D YPD4_2454 aat; aspartate aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D YPD4_0468 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:ypd00300]
D YPD4_3271 lysC; aspartate kinase III K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YPD4_0398 bifunctional aspartokinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D YPD4_0100 metL; bifunctional aspartate kinase II/homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D YPD4_3473 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YPD4_2685 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D YPD4_0418 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D YPD4_0906 dapD; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D YPD4_0151 hypothetical protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D YPD4_2676 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D YPD4_3392 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D YPD4_0867 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D YPD4_1703 putative aminotransferase K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D YPD4_0480 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D YPD4_0481 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:ypd00310]
D YPD4_0969 sucB; dihydrolipoamide acetyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D YPD4_3001 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPD4_3451 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPD4_3315 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPD4_2542 faoA; putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPD4_2531 resistance protein K25316 racX; amino-acid racemase [EC:5.1.1.10]
D YPD4_2054 alr; alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D YPD4_3159 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPD4_1140 putative aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPD4_1240 hypothetical protein K25986 ydcJ; 2-oxoadipate dioxygenase/decarboxylase [EC:1.13.11.93]
D YPD4_1445 hypothetical protein K26063 ydiJ; (R)-2-hydroxyglutarate dehydrogenase [EC:1.1.-.-]
C 00220 Arginine biosynthesis [PATH:ypd00220]
D YPD4_3029 argI; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D YPD4_1398 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D YPD4_3457 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D YPD4_2361 ureC; urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D YPD4_2362 ureB; urease (urea amidohydrolase) beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D YPD4_2363 ureA; urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D YPD4_0735 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPD4_1706 putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPD4_0023 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPD4_3493 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D YPD4_1252 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPD4_2454 aat; aspartate aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D YPD4_0888 argA; N-acetylglutamate synthase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D YPD4_3458 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D YPD4_3459 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D YPD4_0151 hypothetical protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D YPD4_3460 argE; acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:ypd00330]
D YPD4_0143 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D YPD4_1069 putative amino acid decarboxylase K01584 adiA; arginine decarboxylase [EC:4.1.1.19]
D YPD4_0754 speA; arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D YPD4_0745 hypothetical protein K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D YPD4_0746 putative carbon-nitrogen hydrolase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D YPD4_0725 speC; ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D YPD4_2995 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D YPD4_2996 speD; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D YPD4_2216 speG; spermidine acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D YPD4_1728 astA; arginine N-succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109]
D YPD4_1730 astB; succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23]
D YPD4_1727 argD; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D YPD4_1729 astD; succinylglutamic semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71]
D YPD4_1731 astE; succinylglutamate desuccinylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96]
D YPD4_0742 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D YPD4_1641 putA; bifunctional PutA protein (includes: proline dehydrogenase and delta-1-pyrroline-5-carboxylate) K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D YPD4_2819 proB; gamma-glutamyl kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D YPD4_2818 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D YPD4_1578 pip; proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D YPD4_1252 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:ypd00340]
D YPD4_1380 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D YPD4_1373 hisI; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D YPD4_1375 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D YPD4_1376 hisH; imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D YPD4_1374 hisF; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D YPD4_1377 hisB; imidazole glycerol-phosphate dehydratase/histidinol phosphatase K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D YPD4_1378 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPD4_1379 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D YPD4_3534 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D YPD4_3535 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D YPD4_1736 hutI; imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D YPD4_1738 atrazine chlorohydrolase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13]
D YPD4_1735 hutG; putative N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
C 00350 Tyrosine metabolism [PATH:ypd00350]
D YPD4_1252 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPD4_1378 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPD4_0282 tyrB; aspartate aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D YPD4_1061 putative pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D YPD4_1335 adhC; alcohol dehydrogenase class III; formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPD4_1917 aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D YPD4_1567 hpaB; 4-hydroxyphenylacetate 3-monooxygenase K00483 hpaB; 4-hydroxyphenylacetate 3-monooxygenase [EC:1.14.14.9]
D YPD4_1568 hpaC; 4-hydroxyphenylacetate 3-monooxygenase coupling protein K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36]
D YPD4_1562 hpaD; 3,4-dihydroxyphenylacetate 2,3-dioxygenase K00455 hpaD; 3,4-dihydroxyphenylacetate 2,3-dioxygenase [EC:1.13.11.15]
D YPD4_1561 hpaE; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase K00151 hpaE; 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC:1.2.1.60]
D YPD4_1563 hpaF; 5-carboxymethyl-2-hydroxymuconate delta-isomerase K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10]
D YPD4_1559 hypothetical protein K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-]
D YPD4_1560 5-carboxymethyl-2-hydroxymuconate delta-isomerase K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-]
D YPD4_1564 hpaH; 2-oxo-hept-3-ene-1,7-dioate hydratase K02509 hpaH; 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-]
D YPD4_1565 hpaI; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]
D YPD4_3159 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPD4_1140 putative aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00360 Phenylalanine metabolism [PATH:ypd00360]
D YPD4_1061 putative pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D YPD4_1252 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPD4_1378 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPD4_0282 tyrB; aspartate aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D YPD4_1887 dadA; D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D YPD4_2909 katY; catalase-peroxidase K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00380 Tryptophan metabolism [PATH:ypd00380]
D YPD4_0969 sucB; dihydrolipoamide acetyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D YPD4_3001 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPD4_3451 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPD4_3315 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPD4_2542 faoA; putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPD4_1061 putative pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D YPD4_1073 catalase K03781 katE; catalase [EC:1.11.1.6]
D YPD4_2909 katY; catalase-peroxidase K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:ypd00400]
D YPD4_2877 aroF; phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPD4_0983 hypothetical protein K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPD4_1441 aroH; 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPD4_0133 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D YPD4_3133 aroQ; 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D YPD4_0213 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D YPD4_2814 aroL; shikimate kinase II K00891 aroK; shikimate kinase [EC:2.7.1.71]
D YPD4_0132 aroK; shikimate kinase I K00891 aroK; shikimate kinase [EC:2.7.1.71]
D YPD4_1234 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D YPD4_2538 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D YPD4_1942 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D YPD4_1941 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D YPD4_1940 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D YPD4_1939 trpC; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24]
D YPD4_1937 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D YPD4_1938 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D YPD4_2876 tyrA; chorismate mutase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D YPD4_1198 chorismate mutase K04093 pheA1; chorismate mutase [EC:5.4.99.5]
D YPD4_2875 pheA1; Prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D YPD4_2930 extracellular solute-binding protein K01713 pheC; cyclohexadienyl dehydratase [EC:4.2.1.51 4.2.1.91]
D YPD4_1252 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPD4_1378 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPD4_0282 tyrB; aspartate aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:ypd00410]
D YPD4_2987 panD; aspartate 1-decarboxylase precursor K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D YPD4_2230 goaG; 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D YPD4_2986 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D YPD4_3315 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPD4_2542 faoA; putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPD4_2439 putative aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:ypd00430]
D YPD4_2802 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D YPD4_0162 tauD; putative taurine dioxygenase K03119 tauD; taurine dioxygenase [EC:1.14.11.17]
D YPD4_2447 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YPD4_2448 ackA; acetate/propionate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism [PATH:ypd00440]
D YPD4_3042 phnI; PhnI protein K06164 phnI; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI [EC:2.7.8.37]
D YPD4_3040 phnG; PhnG protein K06166 phnG; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG [EC:2.7.8.37]
D YPD4_3041 phnH; PhnH protein K06165 phnH; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH [EC:2.7.8.37]
D YPD4_3045 phnL; phosphonates transport ATP-binding protein K05780 phnL; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [EC:2.7.8.37]
D YPD4_3046 phnM; PhnM protein K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63]
D YPD4_3043 phnJ; PhnJ protein K06163 phnJ; alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [EC:4.7.1.1]
D YPD4_3048 phnP; PhnP protein K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C 00450 Selenocompound metabolism [PATH:ypd00450]
D YPD4_0099 hypothetical protein K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D YPD4_0242 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPD4_0591 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPD4_2633 putative aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPD4_3275 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D YPD4_3336 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D YPD4_1451 selenocysteine lyase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D YPD4_1217 trxB; thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D YPD4_2950 cysN; sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D YPD4_2951 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D YPD4_1903 selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D YPD4_3567 selA; selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D YPD4_1353 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:ypd00460]
D YPD4_2495 bglB; putative beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPD4_0538 putative glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPD4_2802 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D YPD4_1900 ansA; cytoplasmic asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D YPD4_1230 ansB; putative L-asparaginase II precursor K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D YPD4_0003 asnA; asparagine synthetase AsnA K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D YPD4_2288 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:ypd00470]
D YPD4_0281 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D YPD4_0487 ddl; D-alanylalanine synthetase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YPD4_2531 resistance protein K25316 racX; amino-acid racemase [EC:5.1.1.10]
D YPD4_2054 alr; alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D YPD4_0735 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPD4_1706 putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPD4_3443 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D YPD4_0483 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D YPD4_2050 mandelate racemase / muconate lactonizing protein K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25]
D YPD4_1636 D-cysteine desulfhydrase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]
D YPD4_3392 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D YPD4_0867 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D YPD4_1191 ABC transport protein K23120 cntL; histidine 2-aminobutanoyltransferase [EC:2.5.1.152 2.5.1.-]
D YPD4_1192 hypothetical protein K23122 cntM; staphylopine/pseudopaline/yersinopine synthase [EC:1.5.1.52 1.5.1.-]
D YPD4_1887 dadA; D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00480 Glutathione metabolism [PATH:ypd00480]
D YPD4_2802 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D YPD4_2331 hypothetical protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D YPD4_2333 hypothetical protein K23123 pxpB; 5-oxoprolinase (ATP-hydrolysing) subunit B [EC:3.5.2.9]
D YPD4_2332 hypothetical protein K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9]
D YPD4_2892 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D YPD4_0749 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D YPD4_3024 pepA; leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D YPD4_2270 pepB; aminopeptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D YPD4_1256 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D YPD4_2825 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D YPD4_1482 gst; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D YPD4_1164 putative glutathione S-transferase-family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D YPD4_3498 gor; glutathione reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D YPD4_2092 icdA; isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D YPD4_1372 gnd; 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D YPD4_1826 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D YPD4_1428 btuE; putative vitamin B12 transport protein K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D YPD4_3450 putative peroxiredoxin/glutaredoxin family protein K24136 pgdX; glutathione-dependent peroxiredoxin [EC:1.11.1.27]
D YPD4_0725 speC; ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D YPD4_2995 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:ypd00511]
D YPD4_2082 lacZ; beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D YPD4_2387 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00540 Lipopolysaccharide biosynthesis [PATH:ypd00540]
D YPD4_0923 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D YPD4_0491 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D YPD4_0921 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D YPD4_2696 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D YPD4_0924 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D YPD4_1239 lpxK; tetraacyldisaccharide 4-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D YPD4_3181 hypothetical protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D YPD4_1784 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D YPD4_3180 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D YPD4_1241 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D YPD4_0051 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D YPD4_1823 msbB; lipid A biosynthesis lauroyl acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D YPD4_1130 hypothetical protein K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29]
D YPD4_1473 hypothetical protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D YPD4_3531 hypothetical protein K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42]
D YPD4_1547 hypothetical protein K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]
D YPD4_1434 dolichyl-phosphate-mannose-protein mannosyltransferase-family protein K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D YPD4_3109 lipid A biosynthesis lauroyl acyltransferase K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242]
D YPD4_2837 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D YPD4_0567 rfaE; ADP-heptose synthase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D YPD4_0939 hypothetical protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D YPD4_0054 rfaD; ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D YPD4_0052 rfaC; lipopolysaccharide heptosyltransferase-1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D YPD4_0053 rfaF; ADP-heptose--LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D YPD4_0360 putative lipopolysaccharide heptosyltransferase III K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
C 00542 O-Antigen repeat unit biosynthesis [PATH:ypd00542]
D YPD4_3412 rfe; putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:ypd00541]
D YPD4_1370 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPD4_1371 galF; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPD4_0991 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YPD4_1912 putative nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D YPD4_3407 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YPD4_3408 rffG; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D YPD4_3405 TDP-4-keto-6-deoxy-D-glucose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
D YPD4_3406 wecD; TDP-D-fucosamine acetyltransferase K16704 rffC; dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase [EC:2.3.1.210]
D YPD4_2732 ddhA; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D YPD4_2731 CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D YPD4_2730 ddhC; putative CDP-4-keto-6-deoxy-D-glucose-3-dehydratase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D YPD4_2733 ddhD; CDP-6-deoxy-delta-3,4-glucoseen reductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D YPD4_2729 prt; paratose synthase K12453 rfbS; CDP-paratose synthetase [EC:1.1.1.342]
D YPD4_1989 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D YPD4_2168 manB; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D YPD4_2717 manB; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D YPD4_2719 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D YPD4_2721 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D YPD4_2722 hypothetical protein K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D YPD4_2720 wcaG; nucleotide di-P-sugar epimerase or dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D YPD4_3626 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D YPD4_3410 rffE; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D YPD4_3409 rffD; putative UDP-glucose/GDP-mannose dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
C 00550 Peptidoglycan biosynthesis [PATH:ypd00550]
D YPD4_3188 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D YPD4_3310 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D YPD4_0486 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D YPD4_0483 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D YPD4_0480 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D YPD4_0487 ddl; D-alanylalanine synthetase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YPD4_0481 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D YPD4_0915 undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D YPD4_0561 uppP; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPD4_1174 hypothetical protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPD4_0482 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D YPD4_0485 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D YPD4_3204 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D YPD4_0125 mrcA; penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YPD4_2977 mrcB; penicillin-binding protein 1b K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D YPD4_2506 hypothetical protein K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D YPD4_2416 pbpA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D YPD4_0479 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D YPD4_1170 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPD4_2420 dacA; putative penicillin-binding protein 5 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPD4_3245 dacB; penicillin-binding protein 4 precursor K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D YPD4_2443 hypothetical protein K12551 sgtA; monofunctional glycosyltransferase [EC:2.4.99.28]
C 00552 Teichoic acid biosynthesis [PATH:ypd00552]
D YPD4_0561 uppP; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPD4_1174 hypothetical protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPD4_3412 rfe; putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:ypd00543]
D YPD4_3412 rfe; putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D YPD4_3401 wecG; putative UDP-N-acetyl-D-mannosaminuronic acid transferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D YPD4_3403 4-alpha-L-fucosyltransferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D YPD4_1720 hmsR; hemin storage system, HmsR protein K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
D YPD4_1721 hmsS; hemin storage system, HmsS protein K11937 pgaD; biofilm PGA synthesis protein PgaD
D YPD4_0064 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:ypd00730]
D YPD4_3291 thiC; thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D YPD4_2244 thiD; phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D YPD4_3293 thiF; thiamine biosynthesis protein ThiF K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
D YPD4_1880 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPD4_2276 aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPD4_2277 aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPD4_2783 thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D YPD4_3295 thiH; thiamine biosynthesis protein ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D YPD4_2785 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D YPD4_3294 thiamine biosynthesis protein ThiG K03149 thiG; thiazole synthase [EC:2.8.1.10]
D YPD4_3292 thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D YPD4_2788 thiL; thiamine monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D YPD4_0316 ribosome-associated GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D YPD4_2012 phoA; alkaline phosphatase precursor K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D YPD4_2116 cotS; Predicted choline kinase involved in LPS biosynthesis K07251 thiK; thiamine kinase [EC:2.7.1.89]
D YPD4_2735 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:ypd00740]
D YPD4_1953 ribA; GTP cyclohydrolase II protein K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D YPD4_2791 ribD; riboflavin biosynthesis protein RibD (includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase) K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D YPD4_3389 putative haloacid dehalogenase-like hydrolase K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104]
D YPD4_0569 ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D YPD4_2790 ribH; riboflavin synthase subunit beta K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D YPD4_1460 ribE; riboflavin synthase subunit alpha K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D YPD4_0412 riboflavin biosynthesis protein: riboflavin kinase and FMN adenyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D YPD4_2087 probable histidine acid phosphatase K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2]
D YPD4_1568 hpaC; 4-hydroxyphenylacetate 3-monooxygenase coupling protein K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36]
D YPD4_3317 fadI; NAD(P)H-flavin reductase K05368 fre; NAD(P)H-flavin reductase [EC:1.5.1.41]
D YPD4_3101 ssuE; NAD(P)H-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D YPD4_0575 putative MutT-family protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D YPD4_2094 hypothetical protein K12152 nudJ; phosphatase NudJ [EC:3.6.1.-]
D YPD4_2517 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:ypd00750]
D YPD4_1479 pdxH; pyridoxamine 5-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D YPD4_1481 pyridoxamine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D YPD4_0759 D-erythrose 4-phosphate dehydrogenase K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72]
D YPD4_2526 pdxB; erythronate-4-phosphate dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290]
D YPD4_1233 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YPD4_0430 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D YPD4_2308 pdxJ; pyridoxal phosphate biosynthetic protein K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D YPD4_0401 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:ypd00760]
D YPD4_2321 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D YPD4_0980 nadA; quinolinate synthetase K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D YPD4_3008 nadC; nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D YPD4_1255 pncB; nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D YPD4_1020 xapA; purine nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D YPD4_0379 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D YPD4_0383 nadR; nicotinamide-nucleotide adenylyltransferase K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D YPD4_2712 Protein ushA precursor:UDP-sugar hydrolase; 5-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D YPD4_2943 stationary-phase survival protein K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D YPD4_2397 nagD; putative N-acetylglucosamine metabolism protein K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D YPD4_2413 nadD; nicotinic acid mononucleotide adenyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D YPD4_2962 hypothetical protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D YPD4_3289 nudC; NADH pyrophosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D YPD4_2293 nadE; NAD(+) synthase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D YPD4_2898 competence damage-inducible protein A K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D YPD4_1899 pncA; putative pyrazinamidase/nicotinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D YPD4_2103 NAD-dependent deacetylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D YPD4_0962 ppnK; inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D YPD4_3448 sthA; soluble pyridine nucleotide transhydrogenase K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1]
D YPD4_2017 pntA; NAD(P) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D YPD4_2016 NAD(P) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D YPD4_3159 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPD4_1140 putative aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:ypd00770]
D YPD4_3435 ilvG; acetolactate synthase II large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPD4_0471 acetolactate synthase isozyme III large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPD4_2007 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPD4_0472 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPD4_2008 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPD4_3426 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D YPD4_3433 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D YPD4_2985 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D YPD4_2781 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D YPD4_2986 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D YPD4_3308 coaA; pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D YPD4_0046 dfp; phosphopantothenoylcysteine synthase/decarboxylase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D YPD4_2962 hypothetical protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D YPD4_0049 coaD; phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D YPD4_3013 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D YPD4_2307 acpS; 4-phosphopantetheinyl transferase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D YPD4_2800 hypothetical protein K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14]
D YPD4_3434 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YPD4_2987 panD; aspartate 1-decarboxylase precursor K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:ypd00780]
D YPD4_1004 bioC; biotin synthesis protein BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D YPD4_1292 putative beta-ketoacyl-[acyl-carrier-protein] synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPD4_2532 fabB; 3-oxoacyl-(acyl carrier protein) synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPD4_2129 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPD4_1267 fabF; 3-oxoacyl-(acyl carrier protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPD4_2130 3-oxoacyl-(acyl-carrier protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPD4_1293 oxidoreductase, short chain dehydrogenase/reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPD4_1291 fabZ; myristoyl-acyl carrier dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPD4_0922 fabZ; (3R)-hydroxymyristoyl ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPD4_0113 bioH; putative biotin biosynthesis protein K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D YPD4_1003 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D YPD4_1000 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D YPD4_1995 bioD; putative dethiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D YPD4_1005 bioD; dithiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D YPD4_1002 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D YPD4_3309 birA; biotin--protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D YPD4_0869 bisC; putative biotin sulfoxide reductas2 K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-]
C 00785 Lipoic acid metabolism [PATH:ypd00785]
D YPD4_2421 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D YPD4_2422 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D YPD4_1438 lplA; lipoate-protein ligase A K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D YPD4_3001 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPD4_3451 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPD4_3003 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D YPD4_3002 aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D YPD4_0968 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D YPD4_0969 sucB; dihydrolipoamide acetyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D YPD4_0776 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D YPD4_0774 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D YPD4_0775 gcsH; glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:ypd00790]
D YPD4_1338 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D YPD4_2012 phoA; alkaline phosphatase precursor K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D YPD4_1814 ntpA; dATP pyrophosphohydrolase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D YPD4_0560 folB; putative dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D YPD4_2984 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D YPD4_3250 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D YPD4_0424 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D YPD4_2521 folC; putative FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D YPD4_1953 ribA; GTP cyclohydrolase II protein K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D YPD4_0150 pabA; para-aminobenzoate synthase component II K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D YPD4_1571 para-aminobenzoate synthase component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D YPD4_2127 4-amino-4-deoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D YPD4_2957 6-pyruvoyl tetrahydrobiopterin synthase family protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D YPD4_2958 hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D YPD4_2761 hypothetical protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D YPD4_0899 hypothetical protein K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D YPD4_1009 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D YPD4_1010 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D YPD4_1011 moaE; molybdopterin [mpt] converting factor, subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D YPD4_0404 mogA; molybdenum cofactor biosynthesis protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D YPD4_1329 moeA; molybdopterin biosynthesis protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D YPD4_0013 molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:ypd00670]
D YPD4_0424 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D YPD4_2211 folD; putative FolD bifunctional protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D YPD4_2288 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YPD4_2215 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D YPD4_3282 PurH protein: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D YPD4_0207 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D YPD4_0774 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D YPD4_3275 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D YPD4_0877 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D YPD4_1909 hypothetical protein K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D YPD4_0252 putative methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D YPD4_0101 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D YPD4_0768 putative 5-formyltetrahydrofolate cyclo-ligase-family protein K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:ypd00860]
D YPD4_2615 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YPD4_1779 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D YPD4_2973 hemL; glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D YPD4_3320 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D YPD4_3395 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D YPD4_3396 hemD; uroporphyrinogen-III synthetase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D YPD4_3287 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D YPD4_2657 hemF; coproporphyrinogen III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D YPD4_0020 hemN; coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D YPD4_2734 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D YPD4_3397 hemX; putative uroporphyrin-III C-methyltransferase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D YPD4_0139 cysG; siroheme synthase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D YPD4_2952 cysG; siroheme synthase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D YPD4_2778 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D YPD4_pMT0053 cobS; porphyrin biosynthetic protein K09882 cobS; cobaltochelatase CobS [EC:6.6.1.2]
D YPD4_1946 btuR; cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D YPD4_0179 bfr; bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:ypd00130]
D YPD4_0272 ubiC; putative chorismate--pyruvate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D YPD4_0273 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D YPD4_3318 oxidoreductase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D YPD4_2517 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D YPD4_0773 visC; hypothetical protein K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D YPD4_1080 ubiG; 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D YPD4_0772 ubiH; 2-octaprenyl-6-methoxyphenyl hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D YPD4_3329 ubiE; ubiquinone/menaquinone biosynthesis methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D YPD4_2399 ubiF; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D YPD4_2481 menF; menaquinone-specific isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D YPD4_2482 acetolactate synthase large subunit K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D YPD4_2483 hypothetical protein K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20]
D YPD4_2485 menC; O-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D YPD4_2486 menE; O-succinylbenzoic acid--CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D YPD4_2484 naphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D YPD4_1446 hypothetical protein K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D YPD4_0091 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D YPD4_1646 TrpR binding protein WrbA K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D YPD4_2089 hypothetical protein K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:ypd00900]
D YPD4_2785 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D YPD4_0914 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D YPD4_2946 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D YPD4_1777 putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D YPD4_2945 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D YPD4_2260 aarC; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D YPD4_0416 lytB; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D YPD4_1294 putative hydroxymethylglutaryl-coenzyme A synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D YPD4_2517 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D YPD4_2784 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D YPD4_3239 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D YPD4_0915 undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation [PATH:ypd00907]
D YPD4_3315 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPD4_2542 faoA; putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPD4_3316 fadA; acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPD4_2543 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D YPD4_2903 C-terminal region of transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D YPD4_2904 putative N-terminal region of transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D YPD4_0757 tktA; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:ypd00523]
D YPD4_3407 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YPD4_3408 rffG; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:ypd01053]
D YPD4_2481 menF; menaquinone-specific isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D YPD4_1408 putative phosphopantetheinyl transferase K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
D YPD4_1683 ybtS; anthranilate synthase component I K04781 mbtI; salicylate synthetase [EC:5.4.4.2 4.2.99.21]
D YPD4_0678 putative siderophore biosysnthesis protein K12240 pchF; L-cysteine---[L-cysteinyl-carrier protein] ligase PchF [EC:6.2.1.69]
D YPD4_0676 hypothetical protein K12241 pchG; pyochelin biosynthesis protein PchG
D YPD4_1674 ybtE; yersiniabactin siderophore biosynthetic protein K04783 irp5; yersiniabactin salicyl-AMP ligase [EC:6.3.2.-]
D YPD4_1678 irp2; yersiniabactin biosynthetic protein K04784 irp2; yersiniabactin nonribosomal peptide synthetase
D YPD4_1676 ybtU; yersiniabactin biosynthetic protein YbtU K04785 irp3; yersiniabactin synthetase, thiazolinyl reductase component
D YPD4_1677 irp1; yersiniabactin biosynthetic protein K04786 irp1; yersiniabactin nonribosomal peptide/polyketide synthase
C 01055 Biosynthesis of vancomycin group antibiotics
D YPD4_3408 rffG; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:ypd00946]
D YPD4_2495 bglB; putative beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPD4_0538 putative glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:ypd00332]
D YPD4_2819 proB; gamma-glutamyl kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D YPD4_2818 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:ypd00261]
D YPD4_2950 cysN; sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D YPD4_2951 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D YPD4_3271 lysC; aspartate kinase III K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YPD4_0398 bifunctional aspartokinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D YPD4_0100 metL; bifunctional aspartate kinase II/homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D YPD4_3473 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YPD4_2685 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D YPD4_0418 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:ypd00521]
D YPD4_2608 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D YPD4_2344 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPD4_2280 putative inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D YPD4_2437 hypothetical protein K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D YPD4_3407 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YPD4_3408 rffG; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D YPD4_2608 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:ypd00525]
D YPD4_3407 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YPD4_3408 rffG; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:ypd00401]
D YPD4_2876 tyrA; chorismate mutase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D YPD4_1252 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPD4_1378 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPD4_0282 tyrB; aspartate aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D YPD4_1942 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D YPD4_1941 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D YPD4_2131 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPD4_1299 putative acyl transferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPD4_2130 3-oxoacyl-(acyl-carrier protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPD4_1293 oxidoreductase, short chain dehydrogenase/reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
C 00999 Biosynthesis of various plant secondary metabolites [PATH:ypd00999]
D YPD4_0753 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D YPD4_0213 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D YPD4_2495 bglB; putative beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPD4_0538 putative glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites [PATH:ypd00997]
D YPD4_0700 iucD; putative siderophore biosynthesis protein IucD K03897 iucD; lysine N6-hydroxylase [EC:1.14.13.59]
D YPD4_1361 alcA; putative siderophore biosynthetic enzyme K03897 iucD; lysine N6-hydroxylase [EC:1.14.13.59]
D YPD4_0702 iucB; putative siderophore biosynthesis protein IucB K03896 iucB; acetyl CoA:N6-hydroxylysine acetyl transferase [EC:2.3.1.102]
D YPD4_0703 iucA2; aerobactin synthetase (subunit alpha) K03894 iucA; N2-citryl-N6-acetyl-N6-hydroxylysine synthase [EC:6.3.2.38]
D YPD4_0704 iucA1; aerobactin synthetase (subunit alpha) K03894 iucA; N2-citryl-N6-acetyl-N6-hydroxylysine synthase [EC:6.3.2.38]
D YPD4_0701 iucC; putative siderophore biosynthesis protein IucC K03895 iucC; aerobactin synthase [EC:6.3.2.39]
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:ypd00362]
D YPD4_3316 fadA; acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPD4_2543 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPD4_1763 putative decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D YPD4_3123 carboxymuconolactone decarboxylase family protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D YPD4_0077 hypothetical protein K16515 galB; 4-oxalomesaconate hydratase [EC:4.2.1.83]
D YPD4_0076 hypothetical protein K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D YPD4_2542 faoA; putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPD4_3315 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
C 00627 Aminobenzoate degradation
D YPD4_2517 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation [PATH:ypd00364]
D YPD4_3335 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00625 Chloroalkane and chloroalkene degradation [PATH:ypd00625]
D YPD4_1335 adhC; alcohol dehydrogenase class III; formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPD4_1917 aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:ypd00361]
D YPD4_3335 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00623 Toluene degradation [PATH:ypd00623]
D YPD4_3335 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation [PATH:ypd00633]
D YPD4_1471 NADH:flavin oxidoreductase / NADH oxidase family protein K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D YPD4_1027 nemA1; NADH:flavin oxidoreductase, Old Yellow Enzyme family K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
C 00642 Ethylbenzene degradation
D YPD4_3316 fadA; acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPD4_2543 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation
C 00791 Atrazine degradation
D YPD4_2361 ureC; urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D YPD4_2362 ureB; urease (urea amidohydrolase) beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D YPD4_2363 ureA; urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00930 Caprolactam degradation [PATH:ypd00930]
D YPD4_3315 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPD4_2542 faoA; putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:ypd00626]
D YPD4_1335 adhC; alcohol dehydrogenase class III; formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPD4_1917 aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:ypd03020]
D YPD4_3298 rpoB; DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D YPD4_3297 rpoC; DNA-directed RNA polymerase beta subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D YPD4_0201 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:ypd03010]
D YPD4_1236 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D YPD4_0909 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D YPD4_0186 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D YPD4_0200 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D YPD4_0195 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D YPD4_3217 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D YPD4_0175 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D YPD4_0192 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D YPD4_3195 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D YPD4_0180 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D YPD4_0199 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D YPD4_0174 rpsl; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D YPD4_0198 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D YPD4_0191 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D YPD4_3301 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D YPD4_0184 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D YPD4_0181 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D YPD4_0182 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D YPD4_0190 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D YPD4_0193 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D YPD4_3299 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D YPD4_3218 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D YPD4_3300 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D YPD4_3302 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D YPD4_3194 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D YPD4_0188 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D YPD4_0196 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D YPD4_0187 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D YPD4_0202 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D YPD4_0194 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D YPD4_2884 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D YPD4_1423 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D YPD4_3240 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D YPD4_0185 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D YPD4_0183 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D YPD4_0189 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D YPD4_r1 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPD4_r20 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPD4_r10 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPD4_r4 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPD4_r17 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPD4_r14 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPD4_r2 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPD4_r19 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPD4_r16 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPD4_r5 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPD4_r13 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPD4_r9 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPD4_r3 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPD4_r8 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPD4_r15 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPD4_r12 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPD4_r18 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPD4_r6 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPD4_r11 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:ypd00970]
D YPD4_t54 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPD4_t44 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPD4_t45 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPD4_t39 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPD4_t48 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPD4_t47 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPD4_t64 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPD4_t32 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPD4_t20 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPD4_t28 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPD4_t23 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPD4_t12 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPD4_t66 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPD4_t13 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPD4_t26 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D YPD4_t35 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPD4_t36 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPD4_t38 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPD4_t1 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPD4_t11 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPD4_t46 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPD4_t60 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPD4_t67 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPD4_t57 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPD4_t8 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPD4_t25 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPD4_t4 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPD4_t3 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPD4_t63 tRNA-His K14226 tRNA-His; tRNA His
D YPD4_t55 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YPD4_t34 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPD4_t27 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPD4_t62 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPD4_t5 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPD4_t51 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPD4_t50 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPD4_r7 unknown K14229 tRNA-Lys; tRNA Lys
D YPD4_t14 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPD4_t40 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPD4_t15 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPD4_t24 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPD4_t33 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPD4_t37 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPD4_t10 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPD4_t52 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPD4_t9 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPD4_t6 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPD4_t2 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D YPD4_t7 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D YPD4_t18 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPD4_t61 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPD4_t68 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPD4_t16 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPD4_t19 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPD4_t49 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPD4_t30 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPD4_t29 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPD4_t53 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPD4_t56 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPD4_t17 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPD4_t59 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPD4_t65 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D YPD4_t31 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YPD4_t58 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YPD4_t41 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPD4_t43 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPD4_t42 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPD4_t21 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPD4_t22 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPD4_t69 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D YPD4_2615 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YPD4_2390 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D YPD4_2895 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D YPD4_1813 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YPD4_1254 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D YPD4_3585 glyQ; glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D YPD4_3584 glyS; glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D YPD4_1421 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D YPD4_1222 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D YPD4_3567 selA; selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D YPD4_2694 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D YPD4_1353 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D YPD4_0207 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D YPD4_3026 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D YPD4_2410 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YPD4_0413 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D YPD4_0792 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D YPD4_1806 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YPD4_0934 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D YPD4_2259 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D YPD4_1424 pheS; phenylalanyl-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D YPD4_1425 pheT; phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D YPD4_1480 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YPD4_0138 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:ypd03060]
D YPD4_0197 preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D YPD4_2796 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D YPD4_2795 secF; protein export protein SecF K03074 secF; preprotein translocase subunit SecF
D YPD4_2797 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D YPD4_3610 membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YPD4_0494 secA; translocase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YPD4_0062 secB; export protein SecB K03071 secB; preprotein translocase subunit SecB
D YPD4_0493 SecA regulator SecM K13301 secM; secretion monitor
D YPD4_2887 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D YPD4_3361 ftsY; cell division protein K03110 ftsY; fused signal recognition particle receptor
D YPD4_3326 tatB; Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D YPD4_3325 tatC; Sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC
D YPD4_2314 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D YPD4_0414 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:ypd04122]
D YPD4_1880 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPD4_2276 aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPD4_2277 aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPD4_1062 putative sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D YPD4_3367 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D YPD4_0173 hypothetical protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D YPD4_0172 hypothetical protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D YPD4_1286 sulfite reductase K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D YPD4_2095 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D YPD4_1011 moaE; molybdopterin [mpt] converting factor, subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D YPD4_1009 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D YPD4_1328 molybdopterin biosynthesis protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D YPD4_1010 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D YPD4_0404 mogA; molybdenum cofactor biosynthesis protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D YPD4_2783 thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D YPD4_3293 thiF; thiamine biosynthesis protein ThiF K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
C 03050 Proteasome
C 03018 RNA degradation [PATH:ypd03018]
D YPD4_0874 dinucleoside polyphosphate hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D YPD4_2138 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D YPD4_3415 rhlB; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D YPD4_2960 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YPD4_3069 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D YPD4_1035 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D YPD4_1041 rhlE; putative ATP-dependent RNA helicase rhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D YPD4_0330 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D YPD4_3067 deaD; cold-shock dead-box protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D YPD4_3379 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D YPD4_3413 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D YPD4_0072 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPD4_0408 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D YPD4_0304 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YPD4_0324 ymr; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D YPD4_2222 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D YPD4_2983 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:ypd03030]
D YPD4_0947 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YPD4_0926 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPD4_pMT0052 DNA polymerase III K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPD4_2739 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YPD4_2124 holB; DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YPD4_2412 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YPD4_0368 holD; DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D YPD4_3025 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D YPD4_3607 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YPD4_0280 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D YPD4_0556 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D YPD4_0285 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YPD4_0946 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D YPD4_0925 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D YPD4_0016 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPD4_0039 ligA2; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPD4_2619 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:ypd03410]
D YPD4_1966 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D YPD4_2327 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D YPD4_0732 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D YPD4_0048 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D YPD4_1627 putative glycosidase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D YPD4_3586 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D YPD4_1906 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D YPD4_1155 nfo; endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D YPD4_0016 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPD4_0790 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YPD4_0039 ligA2; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPD4_2619 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:ypd03420]
D YPD4_2108 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D YPD4_0284 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D YPD4_1007 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D YPD4_1652 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D YPD4_3388 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YPD4_0016 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPD4_0039 ligA2; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPD4_2619 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:ypd03430]
D YPD4_2939 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D YPD4_0322 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D YPD4_0873 DNA mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH
D YPD4_3388 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YPD4_1388 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D YPD4_2254 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D YPD4_0790 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YPD4_0285 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YPD4_0926 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPD4_pMT0052 DNA polymerase III K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPD4_3607 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YPD4_2739 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YPD4_2412 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YPD4_2124 holB; DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YPD4_0947 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YPD4_3025 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D YPD4_0368 holD; DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D YPD4_0039 ligA2; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPD4_2619 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPD4_0135 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPD4_1844 putative methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:ypd03440]
D YPD4_0790 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YPD4_0285 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YPD4_3606 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF
D YPD4_2311 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D YPD4_2737 recombination protein RecR K06187 recR; recombination protein RecR
D YPD4_2897 recA; recombinase A K03553 recA; recombination protein RecA
D YPD4_0016 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPD4_1817 ruvA; Holliday junction DNA helicase motor protein K03550 ruvA; holliday junction DNA helicase RuvA
D YPD4_1818 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D YPD4_1816 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D YPD4_0035 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D YPD4_0885 exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D YPD4_0886 exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D YPD4_0883 recC; exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D YPD4_0887 recD; exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D YPD4_0926 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPD4_pMT0052 DNA polymerase III K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPD4_3607 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YPD4_2739 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YPD4_2412 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YPD4_2124 holB; DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YPD4_0947 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YPD4_3025 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D YPD4_0368 holD; DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D YPD4_0096 priA; primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D YPD4_2741 priC; primosomal replication protein n K04067 priC; primosomal replication protein N''
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:ypd03250]
D YPD4_0148 ppiA; peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:ypd02010]
D YPD4_2642 cysP; thiosulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D YPD4_0073 sbp1; exported sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D YPD4_2641 cysT; sulfate transport system permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D YPD4_2640 cysW; sulfate transport system permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D YPD4_2639 cysA; sulfate transport ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D YPD4_0159 tauA; putative taurine-binding periplasmic protein precursor K15551 tauA; taurine transport system substrate-binding protein
D YPD4_0161 tauC; putative taurine transport system permease protein K15552 tauC; taurine transport system permease protein
D YPD4_0160 tauB; putative taurine transport ATP-binding protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D YPD4_3102 ssuA; solute-binding periplasmic protein of aliphatic sulfonates, ABC transporter K15553 ssuA; sulfonate transport system substrate-binding protein
D YPD4_3104 ssuC; putative aliphatic sulfonates transport permease protein K15554 ssuC; sulfonate transport system permease protein
D YPD4_3105 ssuB; putative aliphatic sulfonates transport ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D YPD4_0995 modA; molybdate-binding periplasmic protein precursor K02020 modA; molybdate transport system substrate-binding protein
D YPD4_0074 hypothetical protein K02020 modA; molybdate transport system substrate-binding protein
D YPD4_0996 modB; molybdate transport permease protein K02018 modB; molybdate transport system permease protein
D YPD4_0997 modC; molybdenum transport ATP-binding protein ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D YPD4_0993 modF; ABC transporter, ATP-binding protein K05776 modF; molybdate transport system ATP-binding protein
D YPD4_2591 sfuA; iron(III)-binding periplasmic protein K02012 afuA; iron(III) transport system substrate-binding protein
D YPD4_2673 hypothetical protein K02012 afuA; iron(III) transport system substrate-binding protein
D YPD4_2592 sfuB; iron(III)-transport system permease K02011 afuB; iron(III) transport system permease protein
D YPD4_2672 putative binding protein-dependent transport system, inner-membrane component K02011 afuB; iron(III) transport system permease protein
D YPD4_2593 sfuC; iron(III)-transport ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D YPD4_2671 probable ABC-transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D YPD4_0460 thiamin/thiamin pyrophosphate ABC transporter, thiamin/thiamin pyrophospate-binding protein K02064 thiB; thiamine transport system substrate-binding protein
D YPD4_0459 thiamine transport system permease protein K02063 thiP; thiamine transport system permease protein
D YPD4_0458 thiamine transport ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D YPD4_1178 potF; putrescine-binding periplasmic protein precursor K11073 potF; putrescine transport system substrate-binding protein
D YPD4_1181 potI; putrescine transport system permease protein K11074 potI; putrescine transport system permease protein
D YPD4_1180 potH; putrescine transport system permease protein K11075 potH; putrescine transport system permease protein
D YPD4_1179 potG; putrescine transport ATP-binding protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D YPD4_2379 proX; glycine betaine-binding periplasmic protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D YPD4_2378 proW; glycine betaine/L-proline transport system permease K02001 proW; glycine betaine/proline transport system permease protein
D YPD4_2377 proV; glycine betaine/L-proline transport ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D YPD4_1063 yehZ1; hypothetical protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D YPD4_1064 ABC type periplasmic choline/glycine/betaine binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D YPD4_1065 putative ABC transport integral membrane subunit K05846 opuBD; osmoprotectant transport system permease protein
D YPD4_1067 putative ABC transport integral membrane subunit K05846 opuBD; osmoprotectant transport system permease protein
D YPD4_1066 putative ABC transport ATP-binding subunit K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D YPD4_3266 malE; periplasmic maltose-binding protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D YPD4_3267 malF; maltose transport system permease protein MalF K10109 malF; maltose/maltodextrin transport system permease protein
D YPD4_3268 malG; maltose transport system permease protein MalG K10110 malG; maltose/maltodextrin transport system permease protein
D YPD4_3265 malK; maltose/maltodextrin transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPD4_2169 mtlK; putative mannitol transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPD4_0813 sugar transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPD4_1668 putative binding-protein-dependent transport system, ATP-binding component K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPD4_0531 transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPD4_3052 putative sugar ABC transporter, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPD4_0814 sugar-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D YPD4_0815 putative maltodextrin transport permease K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D YPD4_0816 maltodextrin permease protein K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D YPD4_1529 putative sugar-binding protein K10192 togB; oligogalacturonide transport system substrate-binding protein
D YPD4_1532 ABC sugar transporter (permease) K10193 togM; oligogalacturonide transport system permease protein
D YPD4_1531 putative sugar ABC transporter (permease) K10194 togN; oligogalacturonide transport system permease protein
D YPD4_1530 putative sugar ABC transporter K10195 togA; oligogalacturonide transport system ATP-binding protein
D YPD4_3186 hypothetical protein K07323 mlaC; phospholipid transport system substrate-binding protein
D YPD4_3185 hypothetical protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D YPD4_3184 hypothetical protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D YPD4_3187 putative anti-sigma B factor antagonist K07122 mlaB; phospholipid transport system transporter-binding protein
D YPD4_3183 putative ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D YPD4_0726 putative sugar ABC transporter periplasmic binding protein K10439 rbsB; ribose transport system substrate-binding protein
D YPD4_3484 sugar-binding transport protein K10439 rbsB; ribose transport system substrate-binding protein
D YPD4_2186 rbsB; sugar binding protein precursor K10439 rbsB; ribose transport system substrate-binding protein
D YPD4_0728 sugar transport system permease protein K10440 rbsC; ribose transport system permease protein
D YPD4_2184 rbsC; putative sugar transport system, permease protein K10440 rbsC; ribose transport system permease protein
D YPD4_3485 sugar transport system permease protein K10440 rbsC; ribose transport system permease protein
D YPD4_2185 rbsA; putative sugar transport system, ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPD4_3486 sugar transport ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPD4_0727 mglA; putative sugar transport ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPD4_0007 ribose permease K06726 rbsD; D-ribose pyranase [EC:5.4.99.62]
D YPD4_1981 araF; L-arabinose-binding periplasmic protein precursor K10537 araF; L-arabinose transport system substrate-binding protein
D YPD4_1983 araH; L-arabinose transport system permease protein K10538 araH; L-arabinose transport system permease protein
D YPD4_1982 araG; L-arabinose transport ATP-binding protein K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12]
D YPD4_3442 putative periplasmic protein precursor K23508 ytfQ; galactofuranose transport system substrate-binding protein
D YPD4_3439 putative sugar transport system permease K23509 ytfT; galactofuranose transport system permease protein
D YPD4_3440 sugar transport system permease K23509 ytfT; galactofuranose transport system permease protein
D YPD4_3441 putative sugar transport system ATP-binding protein K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D YPD4_1340 galactose-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein
D YPD4_1342 mglC; beta-methylgalactoside transporter inner membrane component K10541 mglC; methyl-galactoside transport system permease protein
D YPD4_1341 mglA; galactoside transport ATP-binding protein K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D YPD4_3551 sugar-binding periplasmic protein K10543 xylF; D-xylose transport system substrate-binding protein
D YPD4_3549 sugar transport system permease protein K10544 xylH; D-xylose transport system permease protein
D YPD4_3550 sugar transport ATP-binding protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D YPD4_2908 sugar ABC transporter, periplasmic protein K17202 eryG; erythritol transport system substrate-binding protein
D YPD4_2905 putative sugar ABC transporter, permease protein K17203 eryF; erythritol transport system permease protein
D YPD4_2906 putative sugar ABC transporter, ATP-binding protein K17204 eryE; erythritol transport system ATP-binding protein
D YPD4_0810 sugar-binding periplasmic protein K17205 xltC; putative xylitol transport system substrate-binding protein
D YPD4_0811 sugar transport system permease K17206 xltB; putative xylitol transport system permease protein
D YPD4_0812 sugar transport ATP-binding protein K17207 xltA; putative xylitol transport system ATP-binding protein
D YPD4_2435 putative sugar-binding periplasmic protein K17208 ibpA; inositol transport system substrate-binding protein
D YPD4_2433 sugar transport system permease protein K17209 iatP; inositol transport system permease protein
D YPD4_2434 rbsA; ATP-binding component of D-ribose high-affinity transport system K17210 iatA; inositol transport system ATP-binding protein
D YPD4_3343 ugpB; glycerol-3-phosphate-binding periplasmic protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D YPD4_3342 ugpA; sn-glycerol-3-phosphate transport system, permease protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D YPD4_3341 ugpE; sn-glycerol-3-phosphate transport system, permease protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D YPD4_3340 ugpC; sn-glycerol-3-phosphate transport, ATP-binding protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D YPD4_2807 pstS; phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D YPD4_3624 pstS; putative phosphate-binding periplasmic protein K02040 pstS; phosphate transport system substrate-binding protein
D YPD4_2221 putative phosphate transport system permease K02037 pstC; phosphate transport system permease protein
D YPD4_3623 pstC; putative phosphate transport system permease K02037 pstC; phosphate transport system permease protein
D YPD4_2220 pstA; putative phosphate transport system permease K02038 pstA; phosphate transport system permease protein
D YPD4_3622 phosphate transport system permease K02038 pstA; phosphate transport system permease protein
D YPD4_2219 pstb; putative phosphate transport ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D YPD4_3621 pstB; putative phosphate transport ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D YPD4_1051 putative substrate-binding periplasmic transport protein K02044 phnD; phosphonate transport system substrate-binding protein
D YPD4_1052 inner membrane permease of ABC transporter K02042 phnE; phosphonate transport system permease protein
D YPD4_1053 ABC transport membrane permease K02042 phnE; phosphonate transport system permease protein
D YPD4_1050 putative ABC transport ATP-binding subunit K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D YPD4_2514 hisM; histidine transport system permease protein HisM K10015 hisM; histidine transport system permease protein
D YPD4_2515 hisQ; histidine transport system permease protein HisQ K10016 hisQ; histidine transport system permease protein
D YPD4_2513 hisP; histidine transport ATP-binding protein HisP K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1]
D YPD4_2516 hisJ; histidine ABC transporter, periplasmic histidine-binding protein K10014 hisJ; histidine transport system substrate-binding protein
D YPD4_2197 glnH; glutamine ABC transporter periplasmic-binding protein K10036 glnH; glutamine transport system substrate-binding protein
D YPD4_2198 glnP; glutamine ABC transporter permease component K10037 glnP; glutamine transport system permease protein
D YPD4_2199 glnQ; glutamine ABC transporter ATP-binding component K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D YPD4_1185 hypothetical protein K09996 artJ; arginine transport system substrate-binding protein
D YPD4_1196 artI; arginine-binding periplasmic protein 1 precursor K09997 artI; arginine transport system substrate-binding protein
D YPD4_1194 artM; arginine transport system permease protein K09998 artM; arginine transport system permease protein
D YPD4_1195 artQ; arginine transport system permease protein K09999 artQ; arginine transport system permease protein
D YPD4_1197 artP; ATP-binding component of 3rd arginine transport system K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D YPD4_2405 glnH; putative amino acid-binding protein precursor K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D YPD4_2407 glutamate/aspartate transport system permease K10002 gltK; glutamate/aspartate transport system permease protein
D YPD4_2406 glutamate/aspartate transport system permease K10003 gltJ; glutamate/aspartate transport system permease protein
D YPD4_2408 putative glutamate/aspartate transport ATP-binding protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D YPD4_1637 fliY; putative cystine-binding periplasmic protein K02424 tcyA; L-cystine transport system substrate-binding protein
D YPD4_1638 putative amino-acid ABC transporter (permease) K10009 tcyB; L-cystine transport system permease protein
D YPD4_1639 putative amino-acid ABC transporter (ATP-binding protein) K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D YPD4_3355 livK; branched-chain amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D YPD4_3354 livH; high-affinity branched-chain amino acid transport system, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D YPD4_3353 livM; high-affinity branched-chain amino acid transport system, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D YPD4_3352 livG; high-affinity branched-chain amino acid transport, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D YPD4_3351 livF; high-affinity branched-chain amino acid transport, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D YPD4_0936 putative lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D YPD4_1167 hypothetical protein K02073 metQ; D-methionine transport system substrate-binding protein
D YPD4_0937 ABC transporter permease protein K02072 metI; D-methionine transport system permease protein
D YPD4_1169 putative ABC transport integral membrane subunit K02072 metI; D-methionine transport system permease protein
D YPD4_0938 ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D YPD4_1168 putative ABC transport ATP-binding subunit K02071 metN; D-methionine transport system ATP-binding protein
D YPD4_1055 putative substrate-binding periplasmic transport protein K11959 urtA; urea transport system substrate-binding protein
D YPD4_1056 putative Branched-chain amino acid transport system, permease component K11960 urtB; urea transport system permease protein
D YPD4_1057 putative Branched-chain amino acid transport system, permease component K11961 urtC; urea transport system permease protein
D YPD4_1058 putative ABC transport ATP-binding subunit K11962 urtD; urea transport system ATP-binding protein
D YPD4_1059 livF; ATP-binding component of ABC transporter K11963 urtE; urea transport system ATP-binding protein
D YPD4_1006 putative amino acid transporter K11963 urtE; urea transport system ATP-binding protein
D YPD4_1920 oppA; oligopeptide ABC transporter, periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D YPD4_2048 mppA; putative periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D YPD4_1921 oppB; oligopeptide permease ABC transporter membrane component K15581 oppB; oligopeptide transport system permease protein
D YPD4_1922 oppC; oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein
D YPD4_1923 oligopeptide transport ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D YPD4_1924 oppF; oligopeptide transport ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D YPD4_3522 periplasmic dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein
D YPD4_3521 dipeptide transport system permease protein K12369 dppB; dipeptide transport system permease protein
D YPD4_3520 dppC; dipeptide transport system permease protein K12370 dppC; dipeptide transport system permease protein
D YPD4_3519 dppD; dipeptide transport ATP-binding protein K12371 dppD; dipeptide transport system ATP-binding protein
D YPD4_3518 dppF; dipeptide transport ATP-binding protein K12372 dppF; dipeptide transport system ATP-binding protein
D YPD4_1490 sapA; peptide transport periplasmic protein precursor K19226 sapA; cationic peptide transport system substrate-binding protein
D YPD4_1489 sapB; peptide transport system permease protein K19227 sapB; cationic peptide transport system permease protein
D YPD4_1488 sapC; peptide transport system permease protein K19228 sapC; cationic peptide transport system permease protein
D YPD4_1487 sapD; peptide transport system ATP-binding protein K19229 sapD; cationic peptide transport system ATP-binding protein
D YPD4_1486 sapF; peptide transport system ATP-binding protein K19230 sapF; cationic peptide transport system ATP-binding protein
D YPD4_1127 putative substrate-binding transport protein K13893 yejA; microcin C transport system substrate-binding protein
D YPD4_1126 putative ABC transporter integral membrane subunit K13894 yejB; microcin C transport system permease protein
D YPD4_1125 putative ABC transporter integral membrane subunit K13895 yejE; microcin C transport system permease protein
D YPD4_1124 putative ABC transporter ATP-binding subunit K13896 yejF; microcin C transport system ATP-binding protein
D YPD4_0611 fepB; ferric enterobactin (enterochelin) binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein
D YPD4_1367 putative iron-siderophore transport system, periplasmic binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein
D YPD4_1366 putative iron-siderophore transport system, transmembrane component K23186 fepD; iron-siderophore transport system permease protein
D YPD4_1365 putative iron-siderophore transport system, membrane permease component K23187 fepG; iron-siderophore transport system permease protein
D YPD4_1364 fepC; ferric enterobactin ABC transporter, ATP-binding protein FepC K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D YPD4_2975 fhuD; ferrichrome-binding periplasmic protein precursor K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D YPD4_2974 ferrichrome transport system permease protein FhuB K23228 fhuB; ferric hydroxamate transport system permease protein
D YPD4_2976 fhuC; ferrichrome transport ATP-binding protein FhuC K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D YPD4_2969 priplasmic metal binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein
D YPD4_1427 btuC2; vtamin B12-transporter permease K06073 btuC; vitamin B12 transport system permease protein
D YPD4_1429 vitamin B12 transport ATP-binding protein K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8]
D YPD4_1821 znuA; exported high-affinity zinc uptake system protein K09815 znuA; zinc transport system substrate-binding protein
D YPD4_1819 znuB; high-affinity zinc uptake system membrane protein K09816 znuB; zinc transport system permease protein
D YPD4_1820 znuC; high-affinity zinc uptake system ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D YPD4_1418 periplasmic-binding protein K11604 sitA; manganese/iron transport system substrate-binding protein
D YPD4_1416 yfeC; chelated iron transport system membrane protein K11605 sitC; manganese/iron transport system permease protein
D YPD4_1415 yfeD; chelated iron transport system membrane protein K11606 sitD; manganese/iron transport system permease protein
D YPD4_1417 yfeB; ATP-binding transport protein K11607 sitB; manganese/iron transport system ATP-binding protein
D YPD4_0354 putative periplasmic solute-binding protein K10555 lsrB; AI-2 transport system substrate-binding protein
D YPD4_0356 putative ABC transporter permease protein K10556 lsrC; AI-2 transport system permease protein
D YPD4_0355 putative ABC transporter permease protein K10557 lsrD; AI-2 transport system permease protein
D YPD4_0357 putative ABC transporter ATP-binding protein K10558 lsrA; AI-2 transport system ATP-binding protein
D YPD4_2105 lipoprotein releasing system, transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D YPD4_2107 lipoprotein releasing system, transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D YPD4_2106 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D YPD4_2551 ccmD; putative heme exporter protein D K02196 ccmD; heme exporter protein D
D YPD4_2552 ccmC; putative heme exporter protein C K02195 ccmC; heme exporter protein C
D YPD4_2553 ccmB; heme exporter protein B K02194 ccmB; heme exporter protein B
D YPD4_2554 ccmA; putative heme exporter protein A K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D YPD4_3023 membrane protein K07091 lptF; lipopolysaccharide export system permease protein
D YPD4_3021 hypothetical protein K11720 lptG; lipopolysaccharide export system permease protein
D YPD4_3177 probable ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D YPD4_3359 ftsX; cell division protein K09811 ftsX; cell division transport system permease protein
D YPD4_3360 ftsE; cell division ATP-binding protein K09812 ftsE; cell division transport system ATP-binding protein
D YPD4_0673 ABC-transporter transmembrane protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D YPD4_1680 lipoprotein inner membrane ABC-transporter K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D YPD4_0672 ABC-transporter transmembrane protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D YPD4_1681 ybtQ; inner membrane ABC-transporter YbtQ K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D YPD4_1238 msbA; probable transport ATP-binding protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D YPD4_2756 msbA; probable transport ATP-binding protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D YPD4_2755 mdlB; probable ATP transporter (ATP-binding protein) K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D YPD4_0087 hypothetical protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D YPD4_2427 ABC transporter, ATP-binding protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D YPD4_3454 ABC transporter protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D YPD4_1215 cydC; transport ATP-binding protein K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D YPD4_1216 transport ATP-binding protein K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D YPD4_1210 putative ABC transporter ATP-binding protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D YPD4_2629 putative ABC transporter, ATP-binding protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
C 02060 Phosphotransferase system (PTS) [PATH:ypd02060]
D YPD4_2623 ptsI; PTS system, enzyme I component K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D YPD4_2624 crr; glucose-specific PTS system enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D YPD4_2122 ptsG; PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D YPD4_3168 treB; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D YPD4_2348 celC; PTS system, cellobiose-specific IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D YPD4_2350 celA; PTS system, cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D YPD4_2349 celB; PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D YPD4_1556 manX; PTS system, mannose-specific IIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D YPD4_1555 PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D YPD4_1554 PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component
D YPD4_0833 hypothetical protein K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D YPD4_0836 PTS transport protein K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D YPD4_0835 putative PTS permease protein K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D YPD4_0834 PTS permease protein K02747 agaE; N-acetylgalactosamine PTS system EIID component
D YPD4_2445 phosphotransferase enzyme II, A component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D YPD4_2508 ulaA; ascorbate-specific PTS system enzyme IIC K03475 ulaA; ascorbate PTS system EIIC component
D YPD4_1147 fruB; hypothetical protein K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D YPD4_1149 fruA; PTS system, fructose-specific IIBC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D YPD4_1148 fruK; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D YPD4_0875 phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D YPD4_3175 ptsN; phosphotransferase system enzyme IIA K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:ypd03070]
D YPD4_0574 ABC-transporter outer membrane component K12340 tolC; outer membrane protein
D YPD4_pCD0028 yscO; type III secretion apparatus component K04056 yscO; type III secretion protein O
D YPD4_pCD0029 yscP; type III secretion apparatus component K04057 yscP; type III secretion protein P
D YPD4_pCD0024 yscX; hypothetical protein K04059 yscX; type III secretion protein X
D YPD4_0224 possible type III secretion protein K03219 yscC; type III secretion protein C
D YPD4_pCD0038 yscC; outer membrane secretin precursor K03219 yscC; type III secretion protein C
D YPD4_pCD0026 lcrE; secretion control protein K04058 yscW; type III secretion protein W
D YPD4_0227 type III secretion system apparatus lipoprotein K03222 yscJ; type III secretion protein J
D YPD4_pCD0044 ylpB; needle complex inner membrane lipoprotein K03222 yscJ; type III secretion protein J
D YPD4_0235 putative type III secretion apparatus protein K03226 yscR; type III secretion protein R
D YPD4_pCD0031 yscR; needle complex export protein K03226 yscR; type III secretion protein R
D YPD4_0236 type III secretion apparatus protein K03228 yscT; type III secretion protein T
D YPD4_pCD0032 yscT; needle complex export protein K03228 yscT; type III secretion protein T
D YPD4_0238 type III secretion apparatus protein K03229 yscU; type III secretion protein U
D YPD4_pCD0033 yscU; needle complex export protein K03229 yscU; type III secretion protein U
D YPD4_0230 secretion system apparatus protein K03230 yscV; type III secretion protein V
D YPD4_pCD0022 yscV; low calcium response protein D K03230 yscV; type III secretion protein V
D YPD4_0231 flagellum-specific ATP synthase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D YPD4_pCD0027 yscN; type III secretion system ATPase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D YPD4_0234 type III secretion protein K03225 yscQ; type III secretion protein Q
D YPD4_pCD0030 yscQ; type III secretion protein K03225 yscQ; type III secretion protein Q
D YPD4_pCD0046 yscL; type III secretion protein K03223 yscL; type III secretion protein L
D YPD4_0850 general secretion protein K02453 gspD; general secretion pathway protein D
D YPD4_0859 putative lipoprotein K02465 gspS; general secretion pathway protein S
D YPD4_0849 general secretion pathway protein C K02452 gspC; general secretion pathway protein C
D YPD4_0852 hofF; general protein secretion protein K02455 gspF; general secretion pathway protein F
D YPD4_0853 general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D YPD4_0854 gspJ; general secretion pathway protein J K02459 gspJ; general secretion pathway protein J
D YPD4_0855 general secretion pathway protein K K02460 gspK; general secretion pathway protein K
D YPD4_0856 L-like GSP protein K02461 gspL; general secretion pathway protein L
D YPD4_0851 general secretion pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D YPD4_0858 prepilin peptidase K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D YPD4_2796 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D YPD4_2795 secF; protein export protein SecF K03074 secF; preprotein translocase subunit SecF
D YPD4_0197 preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D YPD4_2797 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D YPD4_3610 membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YPD4_0494 secA; translocase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YPD4_0493 SecA regulator SecM K13301 secM; secretion monitor
D YPD4_3361 ftsY; cell division protein K03110 ftsY; fused signal recognition particle receptor
D YPD4_0062 secB; export protein SecB K03071 secB; preprotein translocase subunit SecB
D YPD4_2887 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D YPD4_3326 tatB; Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D YPD4_3325 tatC; Sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC
D YPD4_1804 hemolysin activator protein K11017 shlB; hemolysin activation/secretion protein
D YPD4_3273 hemolysin activator protein K11017 shlB; hemolysin activation/secretion protein
D YPD4_3274 hlyA; putative hemolysin HlyA K11016 shlA; hemolysin
D YPD4_1805 hemolysin K11016 shlA; hemolysin
D YPD4_pCD0058 hypothetical protein K12341 yadA; adhesin YadA
D YPD4_1231 hypothetical protein K12342 yadB_C; adhesin YadB/C
D YPD4_1232 hypothetical protein K12342 yadB_C; adhesin YadB/C
D YPD4_0720 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPD4_1307 vgrG1; hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPD4_2563 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPD4_0664 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPD4_3091 vgrG6; putative Rhs accessory genetic element K11904 vgrG; type VI secretion system secreted protein VgrG
D YPD4_3085 putative Rhs accessory genetic element K11904 vgrG; type VI secretion system secreted protein VgrG
D YPD4_0444 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPD4_0718 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPD4_2571 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPD4_1305 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPD4_0439 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPD4_3262 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPD4_2570 type VI secretion lipoprotein, family K11906 vasD; type VI secretion system protein VasD
D YPD4_3075 putative lipoprotein K11906 vasD; type VI secretion system protein VasD
D YPD4_1321 hypothetical protein K11906 vasD; type VI secretion system protein VasD
D YPD4_0450 lipoprotein K11906 vasD; type VI secretion system protein VasD
D YPD4_3082 hypothetical protein K11891 impL; type VI secretion system protein ImpL
D YPD4_2564 hypothetical protein K11891 impL; type VI secretion system protein ImpL
D YPD4_1315 hypothetical protein K11891 impL; type VI secretion system protein ImpL
D YPD4_0453 hypothetical protein K11891 impL; type VI secretion system protein ImpL
D YPD4_3077 hypothetical protein K11892 impK; type VI secretion system protein ImpK
D YPD4_0715 hypothetical protein K11892 impK; type VI secretion system protein ImpK
D YPD4_1303 hypothetical protein K11892 impK; type VI secretion system protein ImpK
D YPD4_0452 hypothetical protein K11892 impK; type VI secretion system protein ImpK
D YPD4_2568 type IV / VI secretion system protein, DotU family K11892 impK; type VI secretion system protein ImpK
D YPD4_3078 clpB2; Clp ATPase K11907 vasG; type VI secretion system protein VasG
D YPD4_0719 putative ATPase subunit of ATP-dependent protease K11907 vasG; type VI secretion system protein VasG
D YPD4_1306 clpB3; Clp ATPase K11907 vasG; type VI secretion system protein VasG
D YPD4_0443 Clp ATPase K11907 vasG; type VI secretion system protein VasG
D YPD4_2580 clpB; putative Clp ATPase K11907 vasG; type VI secretion system protein VasG
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:ypd02020]
D YPD4_2808 phoR; phosphate regulon sensor protein PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D YPD4_2809 phoB; positive response regulator for pho regulon K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D YPD4_2636 response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D YPD4_2012 phoA; alkaline phosphatase precursor K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D YPD4_2807 pstS; phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D YPD4_3624 pstS; putative phosphate-binding periplasmic protein K02040 pstS; phosphate transport system substrate-binding protein
D YPD4_2100 phoQ; sensor protein kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D YPD4_2099 phoP; response regulator protein K07660 phoP; two-component system, OmpR family, response regulator PhoP
D YPD4_0118 envZ; osmolarity sensor protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D YPD4_0117 ompR; osmolarity response regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D YPD4_1087 ompC; outer membrane protein C, porin K09475 ompC; outer membrane pore protein C
D YPD4_1253 putative outer membrane porin C protein K09476 ompF; outer membrane pore protein F
D YPD4_0067 two component sensor kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D YPD4_0068 cpxR; two component system response regulatory protein K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D YPD4_0502 hypothetical protein K25864 mzrA; modulator protein MzrA
D YPD4_2022 two-component regulatory system, sensor kinase protein K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D YPD4_2021 rstA; two-component regulatory system, response regulator protein K07661 rstA; two-component system, OmpR family, response regulator RstA
D YPD4_2965 global stress requirement protein GsrA K04771 degP; serine protease Do [EC:3.4.21.107]
D YPD4_0785 creC; putative histidine kinase sensor K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D YPD4_0784 response regulator K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB
D YPD4_2237 hypothetical protein K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D YPD4_2238 baeR; transcriptional response regulatory protein (sensor BaeS) K07664 baeR; two-component system, OmpR family, response regulator BaeR
D YPD4_2233 putitive HlyD family secretion protein K07799 mdtA; membrane fusion protein, multidrug efflux system
D YPD4_2234 AcrB/AcrD/AcrF family membrane protein K07788 mdtB; multidrug efflux pump
D YPD4_2235 AcrB/AcrD/AcrF family membrane protein K07789 mdtC; multidrug efflux pump
D YPD4_2236 yegB; hypothetical protein K18326 mdtD; MFS transporter, DHA2 family, multidrug resistance protein
D YPD4_2666 multidrug efflux protein K18324 acrD; multidrug efflux pump
D YPD4_3243 basS; two-component system sensor protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D YPD4_3244 basR; two-component system response regulator K07771 basR; two-component system, OmpR family, response regulator BasR
D YPD4_1430 hypothetical protein K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D YPD4_1764 two-component system sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D YPD4_1765 copR; transcriptional activator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D YPD4_2077 flagellum biosynthesis transcription activator K02402 flhC; flagellar transcriptional activator FlhC
D YPD4_0643 flaA1; putative flagellin K02406 fliC; flagellin
D YPD4_0644 flaA2; putative flagellin K02406 fliC; flagellin
D YPD4_0645 flaA3; putative flagellin K02406 fliC; flagellin
D YPD4_1633 fliC; flagellin K02406 fliC; flagellin
D YPD4_0651 fliA; flagellar biosynthesis sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
D YPD4_1634 fliA; flagellar biosynthesis sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
D YPD4_0652 motA; flagellar motor protein K02556 motA; chemotaxis protein MotA
D YPD4_2076 motA; flagellar motor protein K02556 motA; chemotaxis protein MotA
D YPD4_2341 kdpD; two-component regulatory protein sensor kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D YPD4_2342 kdpE; two-component regulatory protein response regulator KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D YPD4_2338 kdpA; potassium-transporting ATPase subunit A K01546 kdpA; potassium-transporting ATPase potassium-binding subunit
D YPD4_2339 kdpB; potassium-transporting ATPase subunit B K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6]
D YPD4_2340 kdpC; K+-transporting ATPase, C subunit K01548 kdpC; potassium-transporting ATPase KdpC subunit
D YPD4_3202 arcB; aerobic respiration control sensor/response regulatory protein K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D YPD4_0397 arcA; aerobic respiration control protein K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D YPD4_3608 chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D YPD4_2880 hypothetical protein K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D YPD4_1344 sfcA; NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D YPD4_1725 narX; nitrate/nitrite sensor protein K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D YPD4_2665 narP; nitrate/nitrite response regulator protein NarP K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D YPD4_0312 frdA; fumarate reductase K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPD4_0311 frdB; succinate dehydrogenase K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPD4_0310 frdC; fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D YPD4_0309 frdD; fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D YPD4_3525 regulatory protein K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D YPD4_3526 ATP-binding region, ATPase-like protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D YPD4_3529 hypothetical protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D YPD4_3530 uhpA; two-component system response regulator K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D YPD4_1404 putative GerR-family transcriptional regulatory protein K20264 fusR; two-component system, NarL family, response regulator FusR
D YPD4_1082 two component sensor kinase/response regulator protein RcsC K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D YPD4_1084 two-component sensor protein like yojN K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D YPD4_1085 hypothetical protein K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D YPD4_1083 rcsB; probable two component response regulator component B K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D YPD4_2964 two-component regulatory protein K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D YPD4_1651 uvrY; response regulator K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D YPD4_1691 Histidine protein kinase sensor K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D YPD4_1692 putative two-component response regulator K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ
D YPD4_1508 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPD4_1505 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPD4_1509 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPD4_1507 putative chaperone protein K07346 fimC; fimbrial chaperone protein
D YPD4_1520 putative chaperone protein K07346 fimC; fimbrial chaperone protein
D YPD4_3421 putative fimbrial chaperone K07346 fimC; fimbrial chaperone protein
D YPD4_pMT0058 caf1A; putative F1 capsule anchoring protein K07347 fimD; outer membrane usher protein
D YPD4_1688 fimbrial usher protein K07347 fimD; outer membrane usher protein
D YPD4_1518 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPD4_1154 outer membrane usher protein PsaC precursor K07347 fimD; outer membrane usher protein
D YPD4_2577 hypothetical protein K07347 fimD; outer membrane usher protein
D YPD4_1506 probable outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPD4_3422 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPD4_0604 hypothetical protein K02279 cpaB; pilus assembly protein CpaB
D YPD4_0603 hypothetical protein K02280 cpaC; pilus assembly protein CpaC
D YPD4_0601 hypothetical protein K02282 cpaE; pilus assembly protein CpaE
D YPD4_0600 putative type II secretion protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D YPD4_0599 hypothetical protein K12510 tadB; tight adherence protein B
D YPD4_0598 hypothetical protein K12511 tadC; tight adherence protein C
D YPD4_0907 (protein-PII) uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D YPD4_2292 glnB; nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D YPD4_0022 ntrB; Two component regulatory protein involved in nitrogen assimilation K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D YPD4_0021 ntrC; nitrogen regulation protein K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D YPD4_0023 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPD4_1025 PAS protein K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D YPD4_1026 hydG; transcriptional regulatory protein hydG K07713 zraR; two-component system, NtrC family, response regulator HydG
D YPD4_1024 hypothetical protein K07803 zraP; zinc resistance-associated protein
D YPD4_3512 dctA; C4-dicarboxylate transport protein K11103 dctA; aerobic C4-dicarboxylate transport protein
D YPD4_3176 rpoN; DNA-directed RNA polymerase subunit N K03092 rpoN; RNA polymerase sigma-54 factor
D YPD4_2296 Putative sensor-like histidine kinase YfhK K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D YPD4_2294 two-component system response regulator K07715 glrR; two-component system, NtrC family, response regulator GlrR
D YPD4_2062 cheR; chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D YPD4_2200 chemotactic transducer K03406 mcp; methyl-accepting chemotaxis protein
D YPD4_1092 tsr2; putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YPD4_2064 cheD; methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPD4_0861 methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPD4_3575 tar; methyl-accepting chemotaxis protein II K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D YPD4_2080 hypothetical protein K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D YPD4_2081 methyl-accepting chemotaxis protein III (MCP-III) K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D YPD4_2063 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor
D YPD4_2090 putative methyl-accepting chemotaxis protein K03776 aer; aerotaxis receptor
D YPD4_2072 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D YPD4_2073 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YPD4_2060 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YPD4_2061 cheB; chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YPD4_0223 two-component sensor/regulator K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA
D YPD4_0222 putative two-component response regulator K14979 ssrB; two-component system, LuxR family, secretion system response regulator SsrB
D YPD4_0620 sigma-54 transcriptional regulatory protein K10943 flrC; two-component system, response regulator FlrC
D YPD4_2408 putative glutamate/aspartate transport ATP-binding protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D YPD4_2407 glutamate/aspartate transport system permease K10002 gltK; glutamate/aspartate transport system permease protein
D YPD4_2406 glutamate/aspartate transport system permease K10003 gltJ; glutamate/aspartate transport system permease protein
D YPD4_2405 glnH; putative amino acid-binding protein precursor K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D YPD4_0153 crp; cAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D YPD4_0735 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPD4_1706 putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPD4_0972 cydA; cytochrome D ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D YPD4_0973 cydB; cytochrome D ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D YPD4_1975 N-terminal fragment of inner membrane permease K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB
D YPD4_1976 hypothetical protein K12532 rtxD; membrane fusion protein, RTX toxin transport system
D YPD4_1978 putative toxin transport protein K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE
D YPD4_0574 ABC-transporter outer membrane component K12340 tolC; outer membrane protein
D YPD4_3410 rffE; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D YPD4_3409 rffD; putative UDP-glucose/GDP-mannose dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D YPD4_0364 putative pectinesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11]
D YPD4_1592 flgM; negative regulator of flagellin synthesis K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D YPD4_0725 speC; ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:ypd02024]
D YPD4_2891 luxS; S-ribosylhomocysteinase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D YPD4_0324 ymr; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D YPD4_1942 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D YPD4_1941 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D YPD4_2877 aroF; phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPD4_0983 hypothetical protein K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPD4_1441 aroH; 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPD4_2296 Putative sensor-like histidine kinase YfhK K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D YPD4_2294 two-component system response regulator K07715 glrR; two-component system, NtrC family, response regulator GlrR
D YPD4_2077 flagellum biosynthesis transcription activator K02402 flhC; flagellar transcriptional activator FlhC
D YPD4_2342 kdpE; two-component regulatory protein response regulator KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D YPD4_1404 putative GerR-family transcriptional regulatory protein K20264 fusR; two-component system, NarL family, response regulator FusR
D YPD4_0354 putative periplasmic solute-binding protein K10555 lsrB; AI-2 transport system substrate-binding protein
D YPD4_0356 putative ABC transporter permease protein K10556 lsrC; AI-2 transport system permease protein
D YPD4_0355 putative ABC transporter permease protein K10557 lsrD; AI-2 transport system permease protein
D YPD4_0357 putative ABC transporter ATP-binding protein K10558 lsrA; AI-2 transport system ATP-binding protein
D YPD4_0359 putative carbohydrate kinase K11216 lsrK; autoinducer-2 kinase [EC:2.7.1.189]
D YPD4_0358 transcriptional regulator, sorC family K11531 lsrR; lsr operon transcriptional repressor
D YPD4_0353 hypothetical protein K08321 lsrF; 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase [EC:2.3.1.245]
D YPD4_2480 hypothetical protein K20268 rhiA; rhizosphere induced protein
D YPD4_2229 putative transport system periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D YPD4_1788 ABC transporter periplasmic binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D YPD4_1789 putative binding-protein-dependent transport system membrane protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D YPD4_2227 ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D YPD4_2228 putative ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D YPD4_1790 putative binding-protein-dependent transport system membrane protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D YPD4_2232 putative ABC-transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D YPD4_1791 MalK protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D YPD4_3355 livK; branched-chain amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D YPD4_3354 livH; high-affinity branched-chain amino acid transport system, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D YPD4_3353 livM; high-affinity branched-chain amino acid transport system, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D YPD4_3352 livG; high-affinity branched-chain amino acid transport, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D YPD4_3351 livF; high-affinity branched-chain amino acid transport, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D YPD4_2147 N-acylhomoserine lactone synthase YpeI K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184]
D YPD4_0709 ytbI; N-acylhomoserine lactone synthase YtbI K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184]
D YPD4_2148 ypeR; quorum-sensing transcriptional activator YpeR K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D YPD4_0708 yspR; quorum-sensing transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D YPD4_3514 pelY; periplasmic pectate lyase precursor K01728 pel; pectate lyase [EC:4.2.2.2]
D YPD4_0470 AMP binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPD4_1834 long-chain-fatty-acid-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPD4_0153 crp; cAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D YPD4_0277 regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D YPD4_1953 ribA; GTP cyclohydrolase II protein K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D YPD4_2791 ribD; riboflavin biosynthesis protein RibD (includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase) K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D YPD4_3062 outer membrane protein, efflux pump K18139 oprM; outer membrane protein, multidrug efflux system
D YPD4_1920 oppA; oligopeptide ABC transporter, periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D YPD4_2048 mppA; putative periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D YPD4_1921 oppB; oligopeptide permease ABC transporter membrane component K15581 oppB; oligopeptide transport system permease protein
D YPD4_1922 oppC; oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein
D YPD4_1923 oligopeptide transport ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D YPD4_1924 oppF; oligopeptide transport ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D YPD4_3031 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D YPD4_2368 yntA; nickel ABC transporter, periplasmic nickel-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D YPD4_3033 putative transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D YPD4_2367 dppB3; hypothetical protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D YPD4_3034 putative transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D YPD4_2366 binding-protein-dependent transport protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D YPD4_2365 putative transport ATPase K02031 ddpD; peptide/nickel transport system ATP-binding protein
D YPD4_3035 putative ABC transporter transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D YPD4_3036 dipeptide ABC transporter, ATP binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D YPD4_2364 putative transport ATPase K02032 ddpF; peptide/nickel transport system ATP-binding protein
D YPD4_3610 membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YPD4_0197 preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D YPD4_2797 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D YPD4_0494 secA; translocase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YPD4_3361 ftsY; cell division protein K03110 ftsY; fused signal recognition particle receptor
D YPD4_0062 secB; export protein SecB K03071 secB; preprotein translocase subunit SecB
D YPD4_2887 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:ypd02030]
D YPD4_2200 chemotactic transducer K03406 mcp; methyl-accepting chemotaxis protein
D YPD4_1092 tsr2; putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YPD4_2064 cheD; methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPD4_0861 methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPD4_3575 tar; methyl-accepting chemotaxis protein II K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D YPD4_2080 hypothetical protein K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D YPD4_2081 methyl-accepting chemotaxis protein III (MCP-III) K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D YPD4_2063 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor
D YPD4_2090 putative methyl-accepting chemotaxis protein K03776 aer; aerotaxis receptor
D YPD4_3266 malE; periplasmic maltose-binding protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D YPD4_0726 putative sugar ABC transporter periplasmic binding protein K10439 rbsB; ribose transport system substrate-binding protein
D YPD4_3484 sugar-binding transport protein K10439 rbsB; ribose transport system substrate-binding protein
D YPD4_2186 rbsB; sugar binding protein precursor K10439 rbsB; ribose transport system substrate-binding protein
D YPD4_1340 galactose-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein
D YPD4_3522 periplasmic dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein
D YPD4_2073 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YPD4_2072 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D YPD4_2060 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YPD4_2059 cheZ; chemotaxis protein CheZ K03414 cheZ; chemotaxis protein CheZ
D YPD4_2061 cheB; chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YPD4_2062 cheR; chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D YPD4_0623 flagellar motor protein K02410 fliG; flagellar motor switch protein FliG
D YPD4_1624 fliG; flagellar motor protein K02410 fliG; flagellar motor switch protein FliG
D YPD4_0619 hypothetical protein K02416 fliM; flagellar motor switch protein FliM
D YPD4_1617 fliM; flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D YPD4_1616 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D YPD4_0618 fliN; flagellar switch protein K02417 fliN; flagellar motor switch protein FliN
D YPD4_0652 motA; flagellar motor protein K02556 motA; chemotaxis protein MotA
D YPD4_2076 motA; flagellar motor protein K02556 motA; chemotaxis protein MotA
D YPD4_0653 motB; flagellar motor protein K02557 motB; chemotaxis protein MotB
D YPD4_2075 motB1; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:ypd02040]
D YPD4_0621 fliE; putative flagellar hook-basal body complex protein K02408 fliE; flagellar hook-basal body complex protein FliE
D YPD4_1626 fliE1; flagellar basal body protein K02408 fliE; flagellar hook-basal body complex protein FliE
D YPD4_0622 fliF; flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF
D YPD4_1625 fliF; flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF
D YPD4_0623 flagellar motor protein K02410 fliG; flagellar motor switch protein FliG
D YPD4_1624 fliG; flagellar motor protein K02410 fliG; flagellar motor switch protein FliG
D YPD4_0624 flagellar assembly protein K02411 fliH; flagellar assembly protein FliH
D YPD4_1623 fliH; flagellar assembly protein K02411 fliH; flagellar assembly protein FliH
D YPD4_0625 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPD4_1621 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPD4_1622 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPD4_1620 fliJ; flagellar protein K02413 fliJ; flagellar protein FliJ
D YPD4_0649 putative flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D YPD4_1619 fliK; flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D YPD4_1618 flagellar protein FliL K02415 fliL; flagellar protein FliL
D YPD4_0650 putative flagellar biogenesis protein K02415 fliL; flagellar protein FliL
D YPD4_0619 hypothetical protein K02416 fliM; flagellar motor switch protein FliM
D YPD4_1617 fliM; flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D YPD4_1616 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D YPD4_0618 fliN; flagellar switch protein K02417 fliN; flagellar motor switch protein FliN
D YPD4_1615 fliO; flagellar biosynthesis protein K02418 fliO; flagellar protein FliO/FliZ
D YPD4_1614 fliP; flagellar biosynthesis protein K02419 fliP; flagellar biosynthesis protein FliP
D YPD4_0617 fliP; putative flagellar assembly protein K02419 fliP; flagellar biosynthesis protein FliP
D YPD4_1613 fliR; flagellar biosynthesis protein K02421 fliR; flagellar biosynthesis protein FliR
D YPD4_0616 fliR; flagellar biosynthetic protein K02421 fliR; flagellar biosynthesis protein FliR
D YPD4_1587 flhE; flagellar protein FlhE precursor K03516 flhE; flagellar protein FlhE
D YPD4_1586 flhA; flagellar biosynthesis protein K02400 flhA; flagellar biosynthesis protein FlhA
D YPD4_0614 hypothetical protein K02400 flhA; flagellar biosynthesis protein FlhA
D YPD4_1585 flhB; flagellar biosynthesis protein K02401 flhB; flagellar biosynthesis protein FlhB
D YPD4_0615 flhB; flagellar biosynthesis protein K02401 flhB; flagellar biosynthesis protein FlhB
D YPD4_1593 flgA; flagellar basal body P-ring biosynthesis protein K02386 flgA; flagellar basal body P-ring formation protein FlgA
D YPD4_0628 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D YPD4_1594 flgB; flagellar basal body rod protein K02387 flgB; flagellar basal-body rod protein FlgB
D YPD4_0629 flgB; flagellar basal body rod protein K02387 flgB; flagellar basal-body rod protein FlgB
D YPD4_1595 flgC; flagellar basal body rod protein K02388 flgC; flagellar basal-body rod protein FlgC
D YPD4_0630 flgC; flagellar basal body rod protein K02388 flgC; flagellar basal-body rod protein FlgC
D YPD4_1596 flgD; basal-body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D YPD4_0631 flgD; flagellar basal body rod modification protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D YPD4_1597 flgE; flagellar hook protein K02390 flgE; flagellar hook protein FlgE
D YPD4_0632 flgE; flagellar hook protein K02390 flgE; flagellar hook protein FlgE
D YPD4_1598 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D YPD4_0634 hypothetical protein K02391 flgF; flagellar basal-body rod protein FlgF
D YPD4_1599 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D YPD4_0635 flgG; putative flagellar basal-body rod protein K02392 flgG; flagellar basal-body rod protein FlgG
D YPD4_1600 flgH; flagellar L-ring protein precursor K02393 flgH; flagellar L-ring protein FlgH
D YPD4_0636 flgH; flagellar L-ring protein precursor K02393 flgH; flagellar L-ring protein FlgH
D YPD4_1601 flgI; flagellar P-ring protein precursor K02394 flgI; flagellar P-ring protein FlgI
D YPD4_0637 flgI; flagellar P-ring protein precursor K02394 flgI; flagellar P-ring protein FlgI
D YPD4_1602 flgJ; flagellar biosynthesis protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D YPD4_1603 flgK; flagellar hook-associated protein K02396 flgK; flagellar hook-associated protein 1
D YPD4_0638 flgK; flagellar hook-associated protein K02396 flgK; flagellar hook-associated protein 1
D YPD4_1604 flgL; flagellar hook-associated protein K02397 flgL; flagellar hook-associated protein 3 FlgL
D YPD4_0639 flgL; flagellar hook-associated protein K02397 flgL; flagellar hook-associated protein 3 FlgL
D YPD4_0643 flaA1; putative flagellin K02406 fliC; flagellin
D YPD4_0644 flaA2; putative flagellin K02406 fliC; flagellin
D YPD4_0645 flaA3; putative flagellin K02406 fliC; flagellin
D YPD4_1633 fliC; flagellin K02406 fliC; flagellin
D YPD4_0646 fliD; putative flagellar hook-associated protein K02407 fliD; flagellar hook-associated protein 2
D YPD4_1632 fliD; flagellar hook-associated protein K02407 fliD; flagellar hook-associated protein 2
D YPD4_0647 fliS; putative flagellar protein K02422 fliS; flagellar secretion chaperone FliS
D YPD4_1631 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D YPD4_0652 motA; flagellar motor protein K02556 motA; chemotaxis protein MotA
D YPD4_2076 motA; flagellar motor protein K02556 motA; chemotaxis protein MotA
D YPD4_0653 motB; flagellar motor protein K02557 motB; chemotaxis protein MotB
D YPD4_2075 motB1; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB
D YPD4_1592 flgM; negative regulator of flagellin synthesis K02398 flgM; negative regulator of flagellin synthesis FlgM
D YPD4_1591 flgN; flagella synthesis protein FlgN K02399 flgN; flagellar biosynthesis protein FlgN
D YPD4_0627 hypothetical protein K02399 flgN; flagellar biosynthesis protein FlgN
D YPD4_1637 fliY; putative cystine-binding periplasmic protein K02424 tcyA; L-cystine transport system substrate-binding protein
D YPD4_1635 fliZ; putative alternative sigma factor regulatory protein K02425 fliZ; regulator of sigma S factor FliZ
D YPD4_0555 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D YPD4_2077 flagellum biosynthesis transcription activator K02402 flhC; flagellar transcriptional activator FlhC
D YPD4_3176 rpoN; DNA-directed RNA polymerase subunit N K03092 rpoN; RNA polymerase sigma-54 factor
D YPD4_0620 sigma-54 transcriptional regulatory protein K10943 flrC; two-component system, response regulator FlrC
D YPD4_0651 fliA; flagellar biosynthesis sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
D YPD4_1634 fliA; flagellar biosynthesis sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D YPD4_2960 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
D YPD4_3275 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection [PATH:ypd05135]
D YPD4_3472 hypothetical protein K13735 yeeJ; adhesin/invasin
D YPD4_1588 invasin K13735 yeeJ; adhesin/invasin
D YPD4_pCD0058 hypothetical protein K12341 yadA; adhesin YadA
D YPD4_pCD0052 ypkA; secreted protein kinase K23472 ypkA; serine/threonine protein kinase YpkA [EC:2.7.11.1]
D YPD4_pCD0011 yopT; Yop targeted effector K08599 yopT; YopT peptidase [EC:3.4.22.-]
D YPD4_pCD0003 yopE; putative outer membrane virulence protein K23473 yopE; outer membrane virulence protein YopE
D YPD4_pCD0049 yopH; putative secreted protein-tyrosine phosphatase K23474 yopH; tyrosine-protein phosphatase YopH [EC:3.1.3.48]
D YPD4_pCD0018 yopB; secreted effector protein K23475 yopB; transloator
D YPD4_pCD0017 yopD; secreted effector protein K23476 yopD; transloator
D YPD4_pCD0010 yopQ; Yop targeting protein K23477 yopQ; protein YopQ
D YPD4_pCD0015 yopM; secreted effector protein K23478 yopM; outer membrane protein YopM
D YPD4_pCD0051 yopJ; targeted effector protein K08598 yopJ; YopJ protease family
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
D YPD4_3472 hypothetical protein K13735 yeeJ; adhesin/invasin
D YPD4_1588 invasin K13735 yeeJ; adhesin/invasin
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:ypd01501]
D YPD4_1253 putative outer membrane porin C protein K09476 ompF; outer membrane pore protein F
D YPD4_1087 ompC; outer membrane protein C, porin K09475 ompC; outer membrane pore protein C
D YPD4_2772 ampG; Beta-lactamase induction signal transducer AmpG K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D YPD4_2115 nagZ; beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D YPD4_1920 oppA; oligopeptide ABC transporter, periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D YPD4_2048 mppA; putative periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D YPD4_1921 oppB; oligopeptide permease ABC transporter membrane component K15581 oppB; oligopeptide transport system permease protein
D YPD4_1922 oppC; oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein
D YPD4_1923 oligopeptide transport ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D YPD4_1924 oppF; oligopeptide transport ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D YPD4_3064 multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system
D YPD4_2745 acrA; acriflavine resistance protein A K03585 acrA; membrane fusion protein, multidrug efflux system
D YPD4_3063 multidrug efflux protein K18138 acrB; multidrug efflux pump
D YPD4_2747 multidrug efflux protein, RND family K18138 acrB; multidrug efflux pump
D YPD4_0693 putative integral membrane efflux protein K18138 acrB; multidrug efflux pump
D YPD4_3062 outer membrane protein, efflux pump K18139 oprM; outer membrane protein, multidrug efflux system
D YPD4_0574 ABC-transporter outer membrane component K12340 tolC; outer membrane protein
D YPD4_0125 mrcA; penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YPD4_2416 pbpA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D YPD4_0479 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:ypd01502]
D YPD4_0487 ddl; D-alanylalanine synthetase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YPD4_0281 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D YPD4_0481 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D YPD4_0482 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D YPD4_0485 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:ypd01503]
D YPD4_2100 phoQ; sensor protein kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D YPD4_2099 phoP; response regulator protein K07660 phoP; two-component system, OmpR family, response regulator PhoP
D YPD4_3531 hypothetical protein K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42]
D YPD4_1547 hypothetical protein K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]
D YPD4_1430 hypothetical protein K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D YPD4_1431 glycosyl transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D YPD4_1432 hypothetical protein K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305]
D YPD4_1433 hypothetical protein K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D YPD4_1434 dolichyl-phosphate-mannose-protein mannosyltransferase-family protein K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D YPD4_1435 hypothetical protein K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE
D YPD4_1436 hypothetical protein K12963 arnF; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnF
D YPD4_3243 basS; two-component system sensor protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D YPD4_3244 basR; two-component system response regulator K07771 basR; two-component system, OmpR family, response regulator BasR
D YPD4_1473 hypothetical protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D YPD4_1490 sapA; peptide transport periplasmic protein precursor K19226 sapA; cationic peptide transport system substrate-binding protein
D YPD4_1489 sapB; peptide transport system permease protein K19227 sapB; cationic peptide transport system permease protein
D YPD4_1488 sapC; peptide transport system permease protein K19228 sapC; cationic peptide transport system permease protein
D YPD4_1487 sapD; peptide transport system ATP-binding protein K19229 sapD; cationic peptide transport system ATP-binding protein
D YPD4_1486 sapF; peptide transport system ATP-binding protein K19230 sapF; cationic peptide transport system ATP-binding protein
D YPD4_3494 metalloprotease K01406 prtC; serralysin [EC:3.4.24.40]
D YPD4_0933 copper homeostasis lipoprotein K06079 cutF; copper homeostasis protein (lipoprotein)
D YPD4_0067 two component sensor kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D YPD4_0068 cpxR; two component system response regulatory protein K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D YPD4_0889 N-acetylmuramoyl-L-alanine amidase AmiC precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPD4_0321 putative N-acetylmuramoyl-L-alanine amidase-family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPD4_1453 hypothetical protein K19236 ycfS; L,D-transpeptidase YcfS
D YPD4_2965 global stress requirement protein GsrA K04771 degP; serine protease Do [EC:3.4.21.107]
D YPD4_0015 secreted thiol:disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D YPD4_0148 ppiA; peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D YPD4_3064 multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system
D YPD4_2745 acrA; acriflavine resistance protein A K03585 acrA; membrane fusion protein, multidrug efflux system
D YPD4_3063 multidrug efflux protein K18138 acrB; multidrug efflux pump
D YPD4_2747 multidrug efflux protein, RND family K18138 acrB; multidrug efflux pump
D YPD4_0693 putative integral membrane efflux protein K18138 acrB; multidrug efflux pump
D YPD4_0574 ABC-transporter outer membrane component K12340 tolC; outer membrane protein
D YPD4_0923 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:ypd01000]
C 01001 Protein kinases [BR:ypd01001]
D YPD4_1542 hypothetical protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D YPD4_pCD0052 ypkA; secreted protein kinase K23472 ypkA; serine/threonine protein kinase YpkA [EC:2.7.11.1]
D YPD4_2808 phoR; phosphate regulon sensor protein PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D YPD4_2100 phoQ; sensor protein kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D YPD4_0118 envZ; osmolarity sensor protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D YPD4_2022 two-component regulatory system, sensor kinase protein K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D YPD4_0067 two component sensor kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D YPD4_0785 creC; putative histidine kinase sensor K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D YPD4_2237 hypothetical protein K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D YPD4_3243 basS; two-component system sensor protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D YPD4_1764 two-component system sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D YPD4_2341 kdpD; two-component regulatory protein sensor kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D YPD4_3202 arcB; aerobic respiration control sensor/response regulatory protein K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D YPD4_2626 putative two-component system sensor kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D YPD4_1725 narX; nitrate/nitrite sensor protein K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D YPD4_3526 ATP-binding region, ATPase-like protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D YPD4_3529 hypothetical protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D YPD4_1084 two-component sensor protein like yojN K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D YPD4_1085 hypothetical protein K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D YPD4_1082 two component sensor kinase/response regulator protein RcsC K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D YPD4_2964 two-component regulatory protein K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D YPD4_1691 Histidine protein kinase sensor K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D YPD4_3471 hypothetical protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D YPD4_0022 ntrB; Two component regulatory protein involved in nitrogen assimilation K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D YPD4_1025 PAS protein K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D YPD4_2296 Putative sensor-like histidine kinase YfhK K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D YPD4_2073 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YPD4_0223 two-component sensor/regulator K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA
C 01009 Protein phosphatases and associated proteins [BR:ypd01009]
D YPD4_0072 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPD4_2736 htpG; heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
D YPD4_0381 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:ypd01002]
D YPD4_0414 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D YPD4_0858 prepilin peptidase K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D YPD4_0605 hypothetical protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D YPD4_pPCP0007 pla; plasminogen activator protease precursor K08566 pla; plasminogen activator [EC:3.4.23.48]
D YPD4_1093 pla2; putative outer membrane-associated protease K08566 pla; plasminogen activator [EC:3.4.23.48]
D YPD4_2328 pcp; putative pyrrolidone-carboxylate peptidase K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
D YPD4_2252 guaA; bifunctional GMP synthase/glutamine amidotransferase protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D YPD4_0087 hypothetical protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D YPD4_1129 spr; putative lipoprotein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D YPD4_1466 hypothetical protein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-]
D YPD4_1437 nlpC; putative lipoprotein K13695 nlpC; probable lipoprotein NlpC
D YPD4_2518 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D YPD4_3200 glutamate synthase (NADPH) large chain precursor K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D YPD4_3625 glmS; D-fructose-6-phosphate amidotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D YPD4_2398 asnB; asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D YPD4_pCD0051 yopJ; targeted effector protein K08598 yopJ; YopJ protease family
D YPD4_2782 thiJ; 4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme K03152 thiJ; protein deglycase [EC:3.5.1.124]
D YPD4_pCD0011 yopT; Yop targeted effector K08599 yopT; YopT peptidase [EC:3.4.22.-]
D YPD4_1453 hypothetical protein K19236 ycfS; L,D-transpeptidase YcfS
D YPD4_1249 hypothetical protein K21470 ycbB; L,D-transpeptidase YcbB
D YPD4_1248 hypothetical protein K21470 ycbB; L,D-transpeptidase YcbB
D YPD4_0710 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein
D YPD4_0992 hypothetical protein K07052 K07052; CAAX protease family protein
D YPD4_1256 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D YPD4_3496 opdA; oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D YPD4_3494 metalloprotease K01406 prtC; serralysin [EC:3.4.24.40]
D YPD4_3149 putative phage-related protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D YPD4_0884 ptrA; protease III precursor K01407 ptrA; protease III [EC:3.4.24.55]
D YPD4_3511 putative insulinase family protease K07263 pqqL; zinc protease [EC:3.4.24.-]
D YPD4_3024 pepA; leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D YPD4_2270 pepB; aminopeptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D YPD4_2676 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D YPD4_2102 peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D YPD4_0685 peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D YPD4_2825 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D YPD4_2843 N-carbamoyl-L-amino acid amidohydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9]
D YPD4_1822 peptidase, M23 family K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D YPD4_2924 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D YPD4_0908 ampM; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D YPD4_3314 pepQ; proline dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D YPD4_0771 pepP; proline-specific aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D YPD4_2023 putative carboxypeptidase K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
D YPD4_3249 cell division protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D YPD4_1515 heat shock protein HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D YPD4_0756 putative lipoprotein K07387 K07387; metalloprotease [EC:3.4.24.-]
D YPD4_2690 hypothetical protein K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D YPD4_0917 hypothetical protein K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D YPD4_2537 mepA; penicillin-insensitive murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D YPD4_1541 hypothetical protein K09933 mtfA; MtfA peptidase
D YPD4_2029 putative pepetidase K04775 ydgD; protease YdgD [EC:3.4.21.-]
D YPD4_2965 global stress requirement protein GsrA K04771 degP; serine protease Do [EC:3.4.21.107]
D YPD4_3191 protease K04772 degQ; serine protease DegQ [EC:3.4.21.-]
D YPD4_3189 degS; protease K04691 hhoB; serine protease DegS [EC:3.4.21.-]
D YPD4_1577 ptrB; oligopeptidase B K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D YPD4_1170 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPD4_2420 dacA; putative penicillin-binding protein 5 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPD4_1045 pbpG; penicillin-binding protein 7 precursor K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D YPD4_1089 putative penicillin-binding protein AmpH K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-]
D YPD4_3245 dacB; penicillin-binding protein 4 precursor K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D YPD4_2768 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D YPD4_2766 lon; ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D YPD4_1272 Lon protease K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-]
D YPD4_0276 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D YPD4_2314 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D YPD4_1578 pip; proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D YPD4_1514 tail-specific protease precursor K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D YPD4_1901 protease IV K04773 sppA; protease IV [EC:3.4.21.-]
D YPD4_1948 sohB; peptidase family U7 protein K04774 sohB; serine protease SohB [EC:3.4.21.-]
D YPD4_0105 peptidase, S54 (rhomboid) family protein K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105]
D YPD4_0093 hslV; ATP-dependent protease peptidase subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D YPD4_2802 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D YPD4_2240 protease K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D YPD4_3061 hypothetical protein K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV
D YPD4_3060 putative protease K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU
D YPD4_3163 pmbA; Putative modulator of DNA gyrase K03592 pmbA; PmbA protein
D YPD4_3145 tldD; putative modulator of DNA gyrase K03568 tldD; TldD protein
D YPD4_1077 eco; ecotin precursor K08276 eco; ecotin
D YPD4_2442 membrane protein K06894 yfhM; alpha-2-macroglobulin
D YPD4_0327 hflC; hypothetical protein K04087 hflC; modulator of FtsH protease HflC
D YPD4_0326 hflK; hypothetical protein K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:ypd01003]
D YPD4_1747 putative glycosyl transferase K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80]
D YPD4_3467 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D YPD4_3204 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D YPD4_2506 hypothetical protein K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D YPD4_2977 mrcB; penicillin-binding protein 1b K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D YPD4_0125 mrcA; penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YPD4_2443 hypothetical protein K12551 sgtA; monofunctional glycosyltransferase [EC:2.4.99.28]
D YPD4_3401 wecG; putative UDP-N-acetyl-D-mannosaminuronic acid transferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D YPD4_3403 4-alpha-L-fucosyltransferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D YPD4_3412 rfe; putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D YPD4_1720 hmsR; hemin storage system, HmsR protein K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:ypd01005]
D YPD4_0923 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D YPD4_0924 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D YPD4_0491 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D YPD4_0921 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D YPD4_2696 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D YPD4_1239 lpxK; tetraacyldisaccharide 4-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D YPD4_1823 msbB; lipid A biosynthesis lauroyl acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D YPD4_3109 lipid A biosynthesis lauroyl acyltransferase K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242]
D YPD4_1130 hypothetical protein K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29]
D YPD4_0051 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D YPD4_1434 dolichyl-phosphate-mannose-protein mannosyltransferase-family protein K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D YPD4_1547 hypothetical protein K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]
D YPD4_1473 hypothetical protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D YPD4_3531 hypothetical protein K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42]
D YPD4_1784 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D YPD4_1241 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D YPD4_3180 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D YPD4_3181 hypothetical protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D YPD4_0052 rfaC; lipopolysaccharide heptosyltransferase-1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D YPD4_0050 kdtX; lipopolysaccharide core biosynthesis glycosyl transferase K12984 waaE; (heptosyl)LPS beta-1,4-glucosyltransferase [EC:2.4.1.-]
D YPD4_0053 rfaF; ADP-heptose--LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D YPD4_0360 putative lipopolysaccharide heptosyltransferase III K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D YPD4_2837 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D YPD4_0939 hypothetical protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D YPD4_0567 rfaE; ADP-heptose synthase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D YPD4_0054 rfaD; ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D YPD4_2726 glycosyltransferase K24673 wbyI; glycosyltransferase [EC:2.4.1.-]
D YPD4_2725 wbyJ; putative mannosyltransferase K13000 wbyJ; mannosyltransferase [EC:2.4.1.-]
D YPD4_2723 wbyK; putative mannosyltransferase K13001 wbyK; mannosyltransferase [EC:2.4.1.-]
D YPD4_2718 wbyL; probable glycosyltransferase K13002 wbyL; glycosyltransferase [EC:2.4.1.-]
D YPD4_3402 4-alpha-L-fucosyltransferase K02853 wzyE; enterobacterial common antigen polymerase [EC:2.4.99.27]
D YPD4_3412 rfe; putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:ypd01011]
D YPD4_3188 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D YPD4_3310 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D YPD4_0486 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D YPD4_0483 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D YPD4_0480 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D YPD4_0487 ddl; D-alanylalanine synthetase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YPD4_0281 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D YPD4_3443 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D YPD4_0482 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D YPD4_0485 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D YPD4_0561 uppP; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPD4_1174 hypothetical protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPD4_1802 mviN; hypothetical protein K03980 murJ; putative peptidoglycan lipid II flippase
D YPD4_0125 mrcA; penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YPD4_2977 mrcB; penicillin-binding protein 1b K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D YPD4_2506 hypothetical protein K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D YPD4_2416 pbpA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D YPD4_0479 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D YPD4_1170 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPD4_2420 dacA; putative penicillin-binding protein 5 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPD4_3245 dacB; penicillin-binding protein 4 precursor K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D YPD4_1089 putative penicillin-binding protein AmpH K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-]
D YPD4_1045 pbpG; penicillin-binding protein 7 precursor K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D YPD4_3204 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D YPD4_2443 hypothetical protein K12551 sgtA; monofunctional glycosyltransferase [EC:2.4.99.28]
D YPD4_1453 hypothetical protein K19236 ycfS; L,D-transpeptidase YcfS
D YPD4_1249 hypothetical protein K21470 ycbB; L,D-transpeptidase YcbB
D YPD4_1248 hypothetical protein K21470 ycbB; L,D-transpeptidase YcbB
D YPD4_2537 mepA; penicillin-insensitive murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D YPD4_1466 hypothetical protein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-]
D YPD4_1129 spr; putative lipoprotein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D YPD4_1822 peptidase, M23 family K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D YPD4_3149 putative phage-related protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D YPD4_0391 putative soluble lytic murein transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D YPD4_0890 membrane-bound lytic murein transglycosylase A precursor K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D YPD4_1838 putative lipoprotein K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D YPD4_2590 membrane-bound lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D YPD4_0731 membrane-bound lytic murein transglycosylase C (Murein hydrolase C) K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29]
D YPD4_0943 mltD; membrane-bound lytic murein transglycosylase D K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D YPD4_1419 transglycosylase slt family protein K08308 mltE; peptidoglycan lytic transglycosylase E [EC:4.2.2.29]
D YPD4_2301 hypothetical protein K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D YPD4_2126 thymidylate kinase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D YPD4_2418 rare lipoprotein A precursor K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D YPD4_2419 rare lipoprotein A precursor K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D YPD4_0889 N-acetylmuramoyl-L-alanine amidase AmiC precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPD4_0321 putative N-acetylmuramoyl-L-alanine amidase-family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPD4_1525 probable N-acetylmuramoyl-L-alanine amidase K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPD4_3007 ampD; putative signalling protein in beta-lactamase regulation K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:ypd01004]
D YPD4_2131 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPD4_1299 putative acyl transferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPD4_1741 hypothetical protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YPD4_1742 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YPD4_2132 fabH; 3-oxoacyl-(acyl carrier protein) synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YPD4_1292 putative beta-ketoacyl-[acyl-carrier-protein] synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPD4_2532 fabB; 3-oxoacyl-(acyl carrier protein) synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPD4_2129 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPD4_1267 fabF; 3-oxoacyl-(acyl carrier protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPD4_2130 3-oxoacyl-(acyl-carrier protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPD4_1293 oxidoreductase, short chain dehydrogenase/reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPD4_1271 fabA; 3-hydroxydecanoyl-ACP dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D YPD4_1291 fabZ; myristoyl-acyl carrier dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPD4_0922 fabZ; (3R)-hydroxymyristoyl ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPD4_3612 hypothetical protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D YPD4_2702 acyl-CoA thioesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D YPD4_2752 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D YPD4_1930 putative acyl-CoA thioester hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D YPD4_2762 hypothetical protein K12500 tesC; thioesterase III [EC:3.1.2.-]
D YPD4_1677 irp1; yersiniabactin biosynthetic protein K04786 irp1; yersiniabactin nonribosomal peptide/polyketide synthase
D YPD4_1678 irp2; yersiniabactin biosynthetic protein K04784 irp2; yersiniabactin nonribosomal peptide synthetase
D YPD4_0220 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPD4_0470 AMP binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPD4_1834 long-chain-fatty-acid-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPD4_0274 plsB; glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D YPD4_2133 fatty acid/phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D YPD4_0559 hypothetical protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D YPD4_0583 acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:ypd01008]
D YPD4_1408 putative phosphopantetheinyl transferase K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
D YPD4_1677 irp1; yersiniabactin biosynthetic protein K04786 irp1; yersiniabactin nonribosomal peptide/polyketide synthase
D YPD4_1678 irp2; yersiniabactin biosynthetic protein K04784 irp2; yersiniabactin nonribosomal peptide synthetase
D YPD4_1674 ybtE; yersiniabactin siderophore biosynthetic protein K04783 irp5; yersiniabactin salicyl-AMP ligase [EC:6.3.2.-]
D YPD4_0678 putative siderophore biosysnthesis protein K12240 pchF; L-cysteine---[L-cysteinyl-carrier protein] ligase PchF [EC:6.2.1.69]
D YPD4_1676 ybtU; yersiniabactin biosynthetic protein YbtU K04785 irp3; yersiniabactin synthetase, thiazolinyl reductase component
D YPD4_0676 hypothetical protein K12241 pchG; pyochelin biosynthesis protein PchG
D YPD4_1675 ybtT; yersiniabactin biosynthetic protein YbtT K05374 irp4; yersiniabactin synthetase, thioesterase component
C 01006 Prenyltransferases [BR:ypd01006]
D YPD4_2784 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D YPD4_3239 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D YPD4_0915 undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D YPD4_0323 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D YPD4_0091 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D YPD4_0273 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D YPD4_2778 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:ypd01007]
D YPD4_2615 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YPD4_2390 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D YPD4_2982 glutamyl-tRNA synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D YPD4_1480 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YPD4_0138 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D YPD4_2694 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D YPD4_1806 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YPD4_1353 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D YPD4_0413 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D YPD4_3026 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D YPD4_2410 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YPD4_0792 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D YPD4_1813 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YPD4_1254 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D YPD4_2259 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D YPD4_3585 glyQ; glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D YPD4_3584 glyS; glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D YPD4_1222 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D YPD4_0934 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D YPD4_1421 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D YPD4_2895 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D YPD4_1424 pheS; phenylalanyl-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D YPD4_1425 pheT; phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D YPD4_1252 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPD4_3593 aminotransferase, classes I and II K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D YPD4_2454 aat; aspartate aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D YPD4_2606 hypothetical protein K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-]
D YPD4_0282 tyrB; aspartate aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D YPD4_1378 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPD4_0055 kbl; 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D YPD4_1003 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D YPD4_2633 putative aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPD4_0151 hypothetical protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D YPD4_1727 argD; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D YPD4_2230 goaG; 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D YPD4_1000 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D YPD4_2973 hemL; glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D YPD4_3434 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YPD4_1233 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YPD4_2847 hypothetical protein K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112]
D YPD4_1430 hypothetical protein K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D YPD4_3405 TDP-4-keto-6-deoxy-D-glucose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:ypd00194]
D YPD4_3627 atpC; ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D YPD4_3628 ATP synthase beta subunit protein K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D YPD4_3629 atpG; ATP synthase subunit C K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D YPD4_3630 atpA; ATP synthase subunit A K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D YPD4_3631 atpH; ATP synthase subunit D K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D YPD4_3632 atpF; ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D YPD4_3633 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D YPD4_3634 atpI; ATP synthase subunit I K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:ypd03000]
D YPD4_1984 araC; arabinose operon regulatory protein K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D YPD4_0292 rhaR; L-rhamnose operon transcriptional activator K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR
D YPD4_0291 rhaS; L-rhamnose operon regulatory protein K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS
D YPD4_2347 cel operon repressor K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon
D YPD4_1679 ybtA; transcriptional regulator YbtA K05372 ybtA; AraC family transcriptional regulator
D YPD4_0395 putative right origin-binding protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D YPD4_pCD0035 virF; transcriptional regulator K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D YPD4_0066 bifunctional regulatory protein/DNA repair protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D YPD4_0894 gcvA; glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D YPD4_3427 ilvY; LysR-family transcriptional regulatory protein K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D YPD4_3337 metR; lysR-family transcriptional regulatory protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D YPD4_0411 nhaR; transcriptional activator protein NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D YPD4_3449 oxyR; oxidative stress transcriptional regulatory protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D YPD4_0765 iciA; chromosome replication initiation inhibitor protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D YPD4_0469 leuO; leucine transcriptional activator K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D YPD4_1950 cysB; transcriptional regulator for cysteine regulon K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D YPD4_2182 putativeLlysR-family transcriptional regulatory protein K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D YPD4_0078 transcriptional regulator K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway
D YPD4_3156 probable lysR-family transcriptional regulatory protein K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D YPD4_3438 transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D YPD4_1172 deoR; deoxyribose operon repressor K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D YPD4_0104 glpR; glycerol-3-phosphate repressor protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D YPD4_0839 DeoR-family regulatory protein K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D YPD4_2916 putative deoR-family regulatory protein K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator
D YPD4_0821 lacI; lactose operon repressor K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D YPD4_1538 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPD4_1997 putative LacI-family transcriptional regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPD4_2183 putative LacI-family transcriptional regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPD4_3548 putative AraC-family transcriptional regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPD4_0533 LacI-family regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPD4_0659 LacI-family regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPD4_0868 galR; galactose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPD4_0095 cytR; transcriptional repressor K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D YPD4_0474 fruR; putative fructose repressor K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D YPD4_3169 treR; trehalose repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D YPD4_1464 purR; purine nucleotide synthesis repressor K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D YPD4_3478 gntR; gluconate utilization system Gnt-I transcriptional repressor K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D YPD4_2474 putative LacI-family transcriptional regulatory protein K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator
D YPD4_3039 phnF; probable gntR-family transcriptional regulatory protein K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D YPD4_1737 hutC; putative GntR-family transcriptional regulatory protein K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D YPD4_1663 GntR-family putative transcriptional regulatory protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D YPD4_1885 fadR; fatty acid metabolism regulator K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D YPD4_3004 pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D YPD4_1132 transcriptional regulatory protein K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D YPD4_0505 exuR; exu regulon transcriptional regulator K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D YPD4_2231 putative GntR-family regulatory protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D YPD4_1016 betI; transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D YPD4_2744 acrR; putative tetR-family transcriptional regulatory protein K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D YPD4_0044 TetR-family regulatory protein K05501 slmA; TetR/AcrR family transcriptional regulator
D YPD4_1472 TetR-family transcriptional regulatory protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D YPD4_3447 TetR-family transcriptional regulatory protein K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D YPD4_1034 acrR3; Transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D YPD4_0002 asnC; regulatory protein K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D YPD4_1218 lrp; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D YPD4_2085 AsnC-family transcriptional regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D YPD4_2757 probable AsnC-family regulatory protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D YPD4_2148 ypeR; quorum-sensing transcriptional activator YpeR K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D YPD4_0708 yspR; quorum-sensing transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D YPD4_0107 malT; transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D YPD4_1475 slyA; transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D YPD4_2858 emrR; MarR-family transcriptional regulatory protein K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D YPD4_2707 cueR; putative regulatory protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D YPD4_0203 zntR; zinc-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D YPD4_2386 fur; ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D YPD4_0277 regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D YPD4_3277 repressor of aceBA operon K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D YPD4_1524 kdgR; IclR-family transcriptional regulatory protein K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D YPD4_0153 crp; cAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D YPD4_2014 fnr; fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D YPD4_2278 hypothetical protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D YPD4_0329 hypothetical protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D YPD4_2931 arsR; arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D YPD4_1825 putative transcriptional regulator HexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D YPD4_3309 birA; biotin--protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D YPD4_0392 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D YPD4_0461 hypothetical protein K11925 sgrR; SgrR family transcriptional regulator
D YPD4_0383 nadR; nicotinamide-nucleotide adenylyltransferase K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D YPD4_0795 hypothetical protein K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA
D YPD4_3499 putative regulatory protein K02647 cdaR; carbohydrate diacid regulator
D YPD4_0994 modE; molybdenum transport protein ModE K02019 modE; molybdate transport system regulatory protein
D YPD4_0098 metJ; transcriptional repressor protein MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D YPD4_1641 putA; bifunctional PutA protein (includes: proline dehydrogenase and delta-1-pyrroline-5-carboxylate) K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D YPD4_2770 bolA; BolA protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D YPD4_pMT0070 parB; partitioning protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YPD4_pMT0076 putative DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YPD4_pCD0005 plasmid partition protein, ParB family K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YPD4_3319 rfaH; transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D YPD4_3236 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D YPD4_2396 nagC; N-acetylglucosamine repressor K02565 nagC; N-acetylglucosamine repressor
D YPD4_1994 mlc; putative ROK family transcriptional regulatory protein K15545 mlc; transcriptional regulator of PTS gene
D YPD4_3579 mtlR; mannitol operon repressor K02562 mtlR; mannitol operon repressor
D YPD4_1500 tyrR; transcriptional regulatory protein K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D YPD4_2686 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D YPD4_1492 pspF; psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator
D YPD4_1494 pspC; phage shock protein C K03973 pspC; phage shock protein C
D YPD4_0358 transcriptional regulator, sorC family K11531 lsrR; lsr operon transcriptional repressor
D YPD4_3166 rnk; nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase
D YPD4_0748 hypothetical protein K07735 algH; putative transcriptional regulator
D YPD4_2981 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D YPD4_2792 hypothetical protein K07738 nrdR; transcriptional repressor NrdR
D YPD4_2820 crl; curlin genes regulatory protein K11926 crl; sigma factor-binding protein Crl
D YPD4_0476 hypothetical protein K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:ypd03021]
D YPD4_0201 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D YPD4_3298 rpoB; DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D YPD4_3297 rpoC; DNA-directed RNA polymerase beta subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D YPD4_0555 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D YPD4_2940 rpoS; RNA polymerase sigma factor K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D YPD4_2320 rpoE; RNA polymerase sigma-70 factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D YPD4_3358 rpoH; RNA polymerase sigma factor K03089 rpoH; RNA polymerase sigma-32 factor
D YPD4_3176 rpoN; DNA-directed RNA polymerase subunit N K03092 rpoN; RNA polymerase sigma-54 factor
D YPD4_0651 fliA; flagellar biosynthesis sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
D YPD4_1634 fliA; flagellar biosynthesis sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
D YPD4_0455 ATP-dependent helicase HepA K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
D YPD4_3253 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D YPD4_2789 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
D YPD4_3303 transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
D YPD4_3196 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A
D YPD4_3197 sspB; putative stringent starvation protein B K03600 sspB; stringent starvation protein B
D YPD4_2319 rseA; sigma E factor negative regulatory protein K03597 rseA; sigma-E factor negative regulatory protein RseA
D YPD4_2318 rseB; periplasmic negative regulator of sigmaE K03598 rseB; sigma-E factor negative regulatory protein RseB
D YPD4_2317 rseC; sigma E factor regulatory protein K03803 rseC; sigma-E factor negative regulatory protein RseC
D YPD4_2981 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D YPD4_3246 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D YPD4_0116 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D YPD4_3413 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:ypd03019]
D YPD4_2138 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D YPD4_3142 cafA; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D YPD4_2313 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D YPD4_0330 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D YPD4_0317 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D YPD4_3415 rhlB; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D YPD4_1035 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D YPD4_1041 rhlE; putative ATP-dependent RNA helicase rhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D YPD4_3067 deaD; cold-shock dead-box protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D YPD4_3379 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D YPD4_2960 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YPD4_3069 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D YPD4_3413 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D YPD4_0072 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPD4_0408 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D YPD4_0304 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YPD4_0324 ymr; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D YPD4_2222 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D YPD4_2983 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D YPD4_0874 dinucleoside polyphosphate hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D YPD4_3137 hypothetical protein K18765 csrD; RNase E specificity factor CsrD
D YPD4_0090 S-adenosylmethionine:2-demethylmenaquinone methyltransferase K02553 rraA; regulator of ribonuclease activity A
D YPD4_3028 hypothetical protein K09893 rraB; regulator of ribonuclease activity B
D YPD4_3174 hypothetical protein K06958 rapZ; RNase adapter protein RapZ
D YPD4_2032 hrpA; helicase, ATP-dependent K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D YPD4_2978 hrpB; helicase, ATP-dependent K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:ypd03011]
D YPD4_1236 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D YPD4_0909 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D YPD4_0186 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D YPD4_0200 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D YPD4_0195 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D YPD4_3217 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D YPD4_0175 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D YPD4_0192 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D YPD4_3195 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D YPD4_0180 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D YPD4_0199 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D YPD4_0174 rpsl; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D YPD4_0198 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D YPD4_0191 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D YPD4_3301 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D YPD4_0184 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D YPD4_0181 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D YPD4_0182 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D YPD4_0190 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D YPD4_0193 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D YPD4_3218 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D YPD4_3300 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D YPD4_3302 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D YPD4_3299 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D YPD4_3194 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D YPD4_0188 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D YPD4_0196 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D YPD4_0187 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D YPD4_0202 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D YPD4_0194 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D YPD4_2884 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D YPD4_1423 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D YPD4_3240 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D YPD4_0185 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D YPD4_0183 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D YPD4_0189 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D YPD4_r3 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPD4_r8 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPD4_r15 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPD4_r12 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPD4_r18 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPD4_r6 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPD4_r11 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPD4_r1 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPD4_r20 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPD4_r10 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPD4_r4 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPD4_r17 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPD4_r14 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPD4_r2 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPD4_r19 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPD4_r16 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPD4_r5 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPD4_r13 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPD4_r9 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:ypd03009]
D YPD4_2313 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D YPD4_1542 hypothetical protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D YPD4_0317 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D YPD4_2312 era; GTP-binding protein Era K03595 era; GTPase
D YPD4_3242 putative GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
D YPD4_2981 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D YPD4_3253 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D YPD4_2789 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
D YPD4_3303 transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
D YPD4_1121 rsuA; ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D YPD4_0429 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D YPD4_0206 hypothetical protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D YPD4_0367 rsmC; 16S ribosomal RNA m2G1207 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D YPD4_3362 hypothetical protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D YPD4_0750 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D YPD4_3635 gidB; glucose-inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D YPD4_0477 mraW; S-adenosyl-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D YPD4_3209 tetrapyrrole methylase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D YPD4_3495 hypothetical protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D YPD4_1549 rrmA; rRNA (guanine-N1-)-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D YPD4_0332 putative methylase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D YPD4_3248 ftsJ; cell division protein K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D YPD4_2488 hypothetical protein K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D YPD4_0516 putative methyltransferase K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D YPD4_2415 hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D YPD4_1285 hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D YPD4_3497 hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D YPD4_1261 hypothetical protein K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D YPD4_0896 hypothetical protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D YPD4_2263 hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D YPD4_1184 RNA methyltransferase K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D YPD4_0434 rluA; ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D YPD4_1945 hypothetical protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D YPD4_2137 ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D YPD4_2871 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D YPD4_2093 putative pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D YPD4_2862 yfiF; putative tRNA/rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D YPD4_0369 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D YPD4_1800 ribosomal-protein-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D YPD4_2886 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
D YPD4_1229 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D YPD4_3129 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D YPD4_2539 hypothetical protein K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D YPD4_2101 hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D YPD4_2138 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D YPD4_3142 cafA; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D YPD4_0747 Holliday junction resolvase-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D YPD4_1573 dbpA; ATP-dependent RNA helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
D YPD4_3067 deaD; cold-shock dead-box protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D YPD4_2323 srmB; ATP-dependent RNA helicase K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
D YPD4_0316 ribosome-associated GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D YPD4_2256 GTP-binding protein EngA K03977 engA; GTPase
D YPD4_0325 hflX; GTP-binding protein K03665 hflX; GTPase
D YPD4_0212 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D YPD4_0037 spoT; guanosine-3,5-bisbis(diphosphate) 3-pyrophosphydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D YPD4_3255 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D YPD4_3252 hypothetical protein K09748 rimP; ribosome maturation factor RimP
D YPD4_2414 hypothetical protein K09710 ybeB; ribosome-associated protein
D YPD4_2402 hypothetical protein K07042 ybeY; probable rRNA maturation factor
D YPD4_3247 hypothetical protein K07574 yhbY; RNA-binding protein
D YPD4_3578 hypothetical protein K14762 yibL; ribosome-associated protein
D YPD4_3162 hypothetical protein K09889 yjgA; ribosome-associated protein
D YPD4_2873 putative sigma 54 modulation protein K05809 raiA; ribosome-associated inhibitor A
D YPD4_1774 hypothetical protein K06942 ychF; ribosome-binding ATPase
D YPD4_2134 hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:ypd03016]
D YPD4_0563 tRNA nucleotidyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D YPD4_2615 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YPD4_0934 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D YPD4_0413 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D YPD4_2410 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YPD4_1353 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D YPD4_2390 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D YPD4_1806 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YPD4_0792 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D YPD4_1813 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YPD4_2895 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D YPD4_1254 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D YPD4_1421 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D YPD4_1222 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D YPD4_2694 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D YPD4_3026 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D YPD4_2259 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D YPD4_1424 pheS; phenylalanyl-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D YPD4_1425 pheT; phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D YPD4_1480 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YPD4_0138 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D YPD4_0027 D-tyrosyl-tRNA deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D YPD4_2119 hypothetical protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D YPD4_0733 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D YPD4_0935 hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D YPD4_2524 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D YPD4_3256 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D YPD4_2944 tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D YPD4_1880 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPD4_2276 aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPD4_2277 aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPD4_0212 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D YPD4_0323 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D YPD4_3611 thdF; tRNA modification GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D YPD4_3636 gidA; glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D YPD4_1903 selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D YPD4_3226 inositol monophosphatase family protein K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D YPD4_1468 ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D YPD4_0042 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D YPD4_1963 rnb; exoribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D YPD4_1835 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D YPD4_2979 ligT; putative 2-5 RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D YPD4_0385 ATPase K06020 ettA; energy-dependent translational throttle protein EttA
D YPD4_3585 glyQ; glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D YPD4_3584 glyS; glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D YPD4_2982 glutamyl-tRNA synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D YPD4_2710 hypothetical protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D YPD4_2302 deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D YPD4_0278 hypothetical protein K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D YPD4_3128 hypothetical protein K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D YPD4_1044 hypothetical protein K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
D YPD4_2400 tRNA-thiotransferase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D YPD4_1810 hypothetical protein K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D YPD4_1809 hypothetical protein K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D YPD4_1243 smtA; putative methyltransferase K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
D YPD4_3445 trmA; tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D YPD4_2885 tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D YPD4_2862 yfiF; putative tRNA/rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D YPD4_0036 tRNA (guanosine-2-O-)-methyltransferase K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34]
D YPD4_2279 putative SpoU-family rRNA methylase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D YPD4_0065 putative methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D YPD4_2322 hypothetical protein K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D YPD4_0903 hypothetical protein K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D YPD4_0434 rluA; ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D YPD4_2095 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D YPD4_2044 hypothetical protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D YPD4_3367 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D YPD4_0173 hypothetical protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D YPD4_0172 hypothetical protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D YPD4_1286 sulfite reductase K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D YPD4_2274 iscA; iron-sulfur cluster assembly protein K13628 iscA; iron-sulfur cluster assembly protein
D YPD4_0782 hypothetical protein K06980 ygfZ; tRNA-modifying protein YgfZ
D YPD4_2534 hypothetical protein K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D YPD4_2799 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D YPD4_2761 hypothetical protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D YPD4_2957 6-pyruvoyl tetrahydrobiopterin synthase family protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D YPD4_2958 hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D YPD4_0899 hypothetical protein K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D YPD4_0318 putative iron-sulfur cluster-binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D YPD4_2798 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D YPD4_2783 thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D YPD4_0929 hypothetical protein K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D YPD4_2679 acetyltransferase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D YPD4_1832 hypothetical protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D YPD4_0558 gcp; putative glycoprotease K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D YPD4_0320 hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D YPD4_0891 hypothetical protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D YPD4_0330 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D YPD4_3069 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:ypd03012]
D YPD4_1958 hypothetical protein K03113 EIF1; translation initiation factor 1
D YPD4_3254 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D YPD4_1422 infC; protein chain initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D YPD4_0165 ATPase K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D YPD4_0911 elongation factor Ts K02357 tsf; elongation factor Ts
D YPD4_0910 elongation factor Ts K02357 tsf; elongation factor Ts
D YPD4_0177 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D YPD4_3304 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D YPD4_0176 fusA; elongation factor G K02355 fusA; elongation factor G
D YPD4_3566 selB; selenocysteinyl-tRNA-specific translation factor K03833 selB; selenocysteine-specific elongation factor
D YPD4_1780 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D YPD4_0913 frr; ribosome releasing factor K02838 frr; ribosome recycling factor
D YPD4_1781 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D YPD4_1775 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D YPD4_1135 efp2; elongation factor P K02356 efp; elongation factor P
D YPD4_0307 efp; elongation factor P K02356 efp; elongation factor P
D YPD4_0313 lysyl-tRNA synthetase K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D YPD4_0306 iron-sulfur cluster-binding protein, KamA family K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-]
D YPD4_2535 hypothetical protein K09906 epmC; elongation factor P hydroxylase [EC:1.14.-.-]
D YPD4_0791 prfB; peptide chain release factor RF-2 K02836 prfB; peptide chain release factor 2
D YPD4_0370 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
D YPD4_0932 hypothetical protein K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:ypd03110]
D YPD4_1212 clpA; ATP-dependent Clp protease ATP-binding subunit K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D YPD4_2868 Clp ATPase K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D YPD4_2767 clpX; ATP-dependent protease ATP-binding subunit K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D YPD4_0092 hslU; ATP-dependent protease ATP-binding subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D YPD4_2736 htpG; heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
D YPD4_0408 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D YPD4_2272 hscA; chaperone protein HscA K04044 hscA; molecular chaperone HscA
D YPD4_2225 putative heat shock protein K04046 yegD; hypothetical chaperone protein
D YPD4_0304 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YPD4_0409 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D YPD4_0433 djlA; Dna-J like membrane chaperone protein K05801 djlA; DnaJ like chaperone protein
D YPD4_2273 hscB; co-chaperone HscB K04082 hscB; molecular chaperone HscB
D YPD4_0120 hslO; Hsp33-like chaperonin K04083 hslO; molecular chaperone Hsp33
D YPD4_0963 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D YPD4_3596 ibpA; heat shock protein K04080 ibpA; molecular chaperone IbpA
D YPD4_3595 ibpB; heat shock protein K04081 ibpB; molecular chaperone IbpB
D YPD4_0121 hslR; heat shock protein 15 K04762 hslR; ribosome-associated heat shock protein Hsp15
D YPD4_2965 global stress requirement protein GsrA K04771 degP; serine protease Do [EC:3.4.21.107]
D YPD4_3249 cell division protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D YPD4_3633 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D YPD4_1507 putative chaperone protein K07346 fimC; fimbrial chaperone protein
D YPD4_1520 putative chaperone protein K07346 fimC; fimbrial chaperone protein
D YPD4_3421 putative fimbrial chaperone K07346 fimC; fimbrial chaperone protein
D YPD4_0062 secB; export protein SecB K03071 secB; preprotein translocase subunit SecB
D YPD4_0069 cpxP; hypothetical protein K06006 cpxP; periplasmic protein CpxP/Spy
D YPD4_1024 hypothetical protein K07803 zraP; zinc resistance-associated protein
D YPD4_2354 hypothetical protein K19778 hdeB; acid stress chaperone HdeB
D YPD4_2911 hypothetical protein K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D YPD4_2599 oxidoreductase component K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D YPD4_2387 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D YPD4_0148 ppiA; peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D YPD4_2695 ppiB; peptidyl-prolyl cis-trans isomerase B K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D YPD4_2764 ppiD; peptidyl-prolyl cis-trans isomerase D K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D YPD4_0170 fkpA; peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D YPD4_3222 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D YPD4_0415 slpA; FKBX-type 16KD peptidyl-prolyl cis-trans isomerase K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8]
D YPD4_0169 slyD; peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D YPD4_0431 surA; survival protein SurA precursor (peptidyl-prolyl cis-trans isomerase) K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D YPD4_3414 trxA; thioredoxin 1 K03671 TXN; thioredoxin
D YPD4_2704 putative thioredoxin K05838 ybbN; putative thioredoxin
D YPD4_1467 hypothetical protein K07390 grxD; monothiol glutaredoxin
D YPD4_0015 secreted thiol:disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D YPD4_1883 disulfide bond formation protein B K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D YPD4_0789 dsbC; thiol:disulfide interchange protein (DsbC) K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D YPD4_0300 dsbD; thiol:disulfide interchange protein precursor K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
D YPD4_2548 ccmG; thiol:disulfide interchange protein DsbE K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:ypd04131]
D YPD4_2264 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D YPD4_1896 glyceraldehyde 3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D YPD4_0986 gpmA; phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPD4_1824 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPD4_1457 pykF; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPD4_2736 htpG; heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system [BR:ypd04121]
C 03051 Proteasome [BR:ypd03051]
D YPD4_2736 htpG; heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:ypd03032]
D YPD4_0946 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D YPD4_3608 chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D YPD4_0280 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D YPD4_0556 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D YPD4_0285 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YPD4_0926 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPD4_pMT0052 DNA polymerase III K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPD4_3607 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YPD4_3025 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D YPD4_2412 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YPD4_2124 holB; DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YPD4_0947 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YPD4_2739 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YPD4_0368 holD; DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D YPD4_0925 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D YPD4_0016 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPD4_0039 ligA2; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPD4_2619 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPD4_1991 tus; DNA replication terminus site-binding protein K10748 tus; DNA replication terminus site-binding protein
D YPD4_0135 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPD4_1844 putative methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPD4_2345 seqA; putative negative regulator of replication initiation K03645 seqA; negative modulator of initiation of replication
D YPD4_2692 DNA replication initiation factor K10763 hda; DnaA-homolog protein
D YPD4_1081 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D YPD4_3605 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D YPD4_0582 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D YPD4_0579 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D YPD4_1949 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D YPD4_1904 topB; DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:ypd03036]
D YPD4_2313 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D YPD4_1913 hns; DNA-binding protein Hns K03746 hns; DNA-binding protein H-NS
D YPD4_0395 putative right origin-binding protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D YPD4_3608 chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D YPD4_3206 probable phosphosugar isomerase K12961 diaA; DnaA initiator-associating protein
D YPD4_1284 hypothetical protein K11940 hspQ; heat shock protein HspQ
D YPD4_2195 dps; DNA protection during starvation conditions K04047 dps; starvation-inducible DNA-binding protein
D YPD4_0324 ymr; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D YPD4_0765 iciA; chromosome replication initiation inhibitor protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D YPD4_1218 lrp; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D YPD4_2085 AsnC-family transcriptional regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D YPD4_1118 nucleoid-associated protein NdpA K06899 ndpA; nucleoid-associated protein
D YPD4_1246 mukB; condesin subunit B K03632 mukB; chromosome partition protein MukB
D YPD4_1245 hypothetical protein K03804 mukE; chromosome partition protein MukE
D YPD4_1244 mukF; condesin subunit F K03633 mukF; chromosome partition protein MukF
D YPD4_0489 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D YPD4_2947 ftsB; cell divison protein FtsB K05589 ftsB; cell division protein FtsB
D YPD4_3360 ftsE; cell division ATP-binding protein K09812 ftsE; cell division transport system ATP-binding protein
D YPD4_0479 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D YPD4_1219 ftsK; putative cell division protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D YPD4_0478 ftsL; putative cell division protein K03586 ftsL; cell division protein FtsL
D YPD4_0094 ftsN; cell division protein K03591 ftsN; cell division protein FtsN
D YPD4_0488 ftsQ; cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D YPD4_0484 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW
D YPD4_3359 ftsX; cell division protein K09811 ftsX; cell division transport system permease protein
D YPD4_0490 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D YPD4_2620 cell division protein K03528 zipA; cell division protein ZipA
D YPD4_0769 hypothetical protein K09888 zapA; cell division protein ZapA
D YPD4_1259 hypothetical protein K18657 zapC; cell division protein ZapC
D YPD4_3014 hypothetical protein K18778 zapD; cell division protein ZapD
D YPD4_3193 hypothetical protein K06916 zapE; cell division protein ZapE
D YPD4_3221 opacity-associated protein A N-motif protein K07269 ytfB; cell division protein YtfB
D YPD4_0889 N-acetylmuramoyl-L-alanine amidase AmiC precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPD4_0321 putative N-acetylmuramoyl-L-alanine amidase-family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPD4_3064 multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system
D YPD4_2745 acrA; acriflavine resistance protein A K03585 acrA; membrane fusion protein, multidrug efflux system
D YPD4_1837 minC; septum formation inhibitor K03610 minC; septum site-determining protein MinC
D YPD4_1836 minD; septum site-determining protein K03609 minD; septum site-determining protein MinD
D YPD4_1276 sulA; putative cell division inhibitor K13053 sulA; cell division inhibitor SulA
D YPD4_0044 TetR-family regulatory protein K05501 slmA; TetR/AcrR family transcriptional regulator
D YPD4_2345 seqA; putative negative regulator of replication initiation K03645 seqA; negative modulator of initiation of replication
D YPD4_3138 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D YPD4_3139 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D YPD4_3140 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D YPD4_2417 rodA; rod shape-determining protein K05837 rodA; rod shape determining protein RodA
D YPD4_pCD0006 plasmid partitioning transcription repressor K03496 parA; chromosome partitioning protein
D YPD4_pMT0069 parA; putative partitioning protein A K03496 parA; chromosome partitioning protein
D YPD4_pMT0070 parB; partitioning protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YPD4_pMT0076 putative DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YPD4_pCD0005 plasmid partition protein, ParB family K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YPD4_0582 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D YPD4_0579 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D YPD4_3636 gidA; glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D YPD4_3635 gidB; glucose-inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D YPD4_3390 xerC; tyrosine recombinase K03733 xerC; integrase/recombinase XerC
D YPD4_0788 xerD; tyrosine recombinase K04763 xerD; integrase/recombinase XerD
D YPD4_1354 hypothetical protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D YPD4_0018 GTP-binding protein K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:ypd03400]
D YPD4_2013 ogt; putative methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D YPD4_2336 phrB; putative deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D YPD4_2327 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D YPD4_0732 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D YPD4_1966 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D YPD4_0495 mutator protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D YPD4_0045 dut; deoxyuridine 5-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D YPD4_0066 bifunctional regulatory protein/DNA repair protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D YPD4_1627 putative glycosidase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D YPD4_3586 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D YPD4_0048 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D YPD4_1906 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D YPD4_1155 nfo; endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D YPD4_3286 nfi; endonuclease V (deoxyinosine 3endoduclease) K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D YPD4_0790 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YPD4_0039 ligA2; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPD4_2619 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPD4_0016 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPD4_0284 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D YPD4_1007 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D YPD4_1652 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D YPD4_3388 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YPD4_3298 rpoB; DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D YPD4_3297 rpoC; DNA-directed RNA polymerase beta subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D YPD4_0201 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D YPD4_2108 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D YPD4_2939 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D YPD4_0322 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D YPD4_0873 DNA mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH
D YPD4_1388 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D YPD4_2254 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D YPD4_0926 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPD4_pMT0052 DNA polymerase III K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPD4_3607 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YPD4_3025 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D YPD4_2412 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YPD4_2124 holB; DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YPD4_0947 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YPD4_2739 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YPD4_0368 holD; DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D YPD4_0285 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YPD4_0135 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPD4_1844 putative methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPD4_0885 exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D YPD4_0886 exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D YPD4_0883 recC; exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D YPD4_0887 recD; exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D YPD4_2897 recA; recombinase A K03553 recA; recombination protein RecA
D YPD4_1817 ruvA; Holliday junction DNA helicase motor protein K03550 ruvA; holliday junction DNA helicase RuvA
D YPD4_1818 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D YPD4_1816 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D YPD4_0096 priA; primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D YPD4_2741 priC; primosomal replication protein n K04067 priC; primosomal replication protein N''
D YPD4_2811 periplasmic binding transport protein K03546 sbcC; DNA repair protein SbcC/Rad50
D YPD4_2810 sbcD; exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D YPD4_0382 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D YPD4_3606 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF
D YPD4_0035 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D YPD4_2311 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D YPD4_2737 recombination protein RecR K06187 recR; recombination protein RecR
D YPD4_0961 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D YPD4_2813 rdgC; recombination associated protein K03554 rdgC; recombination associated protein RdgC
D YPD4_2158 hypothetical protein K15342 cas1; CRISP-associated protein Cas1
D YPD4_1120 putative DEAD box helicase family protein K19789 radD; DNA repair protein RadD
D YPD4_0149 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D YPD4_1081 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D YPD4_3605 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D YPD4_1949 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D YPD4_3379 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D YPD4_1913 hns; DNA-binding protein Hns K03746 hns; DNA-binding protein H-NS
D YPD4_2826 dinP; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D YPD4_0276 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D YPD4_0456 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7]
D YPD4_2896 recX; RecA regulator RecX K03565 recX; regulatory protein
D YPD4_3417 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D YPD4_1280 helD; DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4]
D YPD4_1072 dinG; putative ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D YPD4_1831 putative DEAD box family helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D YPD4_2375 nrdE; ribonucleotide-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPD4_1079 nrdA; ribonucleotide-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPD4_1078 nrdB; ribonucleotide-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YPD4_2376 nrdF; ribonucleotide-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:ypd03029]
D YPD4_3254 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D YPD4_1422 infC; protein chain initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D YPD4_0911 elongation factor Ts K02357 tsf; elongation factor Ts
D YPD4_0910 elongation factor Ts K02357 tsf; elongation factor Ts
D YPD4_0177 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D YPD4_3304 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D YPD4_0176 fusA; elongation factor G K02355 fusA; elongation factor G
D YPD4_2312 era; GTP-binding protein Era K03595 era; GTPase
D YPD4_1480 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YPD4_2410 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YPD4_1813 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YPD4_1806 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YPD4_0285 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YPD4_0918 surface antigen K07277 SAM50; outer membrane protein insertion porin family
D YPD4_0919 surface antigen K07277 SAM50; outer membrane protein insertion porin family
D YPD4_0408 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D YPD4_0963 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D YPD4_0304 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YPD4_0409 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D YPD4_1880 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPD4_2276 aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPD4_2277 aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPD4_2273 hscB; co-chaperone HscB K04082 hscB; molecular chaperone HscB
D YPD4_1467 hypothetical protein K07390 grxD; monothiol glutaredoxin
D YPD4_1354 hypothetical protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D YPD4_2778 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D YPD4_3610 membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YPD4_2736 htpG; heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:ypd02000]
D YPD4_0673 ABC-transporter transmembrane protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D YPD4_1680 lipoprotein inner membrane ABC-transporter K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D YPD4_0672 ABC-transporter transmembrane protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D YPD4_1681 ybtQ; inner membrane ABC-transporter YbtQ K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D YPD4_1238 msbA; probable transport ATP-binding protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D YPD4_2756 msbA; probable transport ATP-binding protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D YPD4_2755 mdlB; probable ATP transporter (ATP-binding protein) K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D YPD4_1975 N-terminal fragment of inner membrane permease K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB
D YPD4_1978 putative toxin transport protein K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE
D YPD4_0087 hypothetical protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D YPD4_2427 ABC transporter, ATP-binding protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D YPD4_1543 putative ABC transporter (ATP-binding protein) K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D YPD4_3454 ABC transporter protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D YPD4_1215 cydC; transport ATP-binding protein K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D YPD4_1216 transport ATP-binding protein K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D YPD4_1210 putative ABC transporter ATP-binding protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D YPD4_2629 putative ABC transporter, ATP-binding protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D YPD4_1262 uup; ABC transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein
D YPD4_2642 cysP; thiosulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D YPD4_0073 sbp1; exported sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D YPD4_2641 cysT; sulfate transport system permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D YPD4_2640 cysW; sulfate transport system permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D YPD4_2639 cysA; sulfate transport ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D YPD4_0995 modA; molybdate-binding periplasmic protein precursor K02020 modA; molybdate transport system substrate-binding protein
D YPD4_0074 hypothetical protein K02020 modA; molybdate transport system substrate-binding protein
D YPD4_0996 modB; molybdate transport permease protein K02018 modB; molybdate transport system permease protein
D YPD4_0997 modC; molybdenum transport ATP-binding protein ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D YPD4_0993 modF; ABC transporter, ATP-binding protein K05776 modF; molybdate transport system ATP-binding protein
D YPD4_0159 tauA; putative taurine-binding periplasmic protein precursor K15551 tauA; taurine transport system substrate-binding protein
D YPD4_0161 tauC; putative taurine transport system permease protein K15552 tauC; taurine transport system permease protein
D YPD4_0160 tauB; putative taurine transport ATP-binding protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D YPD4_3102 ssuA; solute-binding periplasmic protein of aliphatic sulfonates, ABC transporter K15553 ssuA; sulfonate transport system substrate-binding protein
D YPD4_3104 ssuC; putative aliphatic sulfonates transport permease protein K15554 ssuC; sulfonate transport system permease protein
D YPD4_3105 ssuB; putative aliphatic sulfonates transport ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D YPD4_2591 sfuA; iron(III)-binding periplasmic protein K02012 afuA; iron(III) transport system substrate-binding protein
D YPD4_2673 hypothetical protein K02012 afuA; iron(III) transport system substrate-binding protein
D YPD4_2592 sfuB; iron(III)-transport system permease K02011 afuB; iron(III) transport system permease protein
D YPD4_2672 putative binding protein-dependent transport system, inner-membrane component K02011 afuB; iron(III) transport system permease protein
D YPD4_2593 sfuC; iron(III)-transport ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D YPD4_2671 probable ABC-transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D YPD4_0460 thiamin/thiamin pyrophosphate ABC transporter, thiamin/thiamin pyrophospate-binding protein K02064 thiB; thiamine transport system substrate-binding protein
D YPD4_0459 thiamine transport system permease protein K02063 thiP; thiamine transport system permease protein
D YPD4_0458 thiamine transport ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D YPD4_1178 potF; putrescine-binding periplasmic protein precursor K11073 potF; putrescine transport system substrate-binding protein
D YPD4_1181 potI; putrescine transport system permease protein K11074 potI; putrescine transport system permease protein
D YPD4_1180 potH; putrescine transport system permease protein K11075 potH; putrescine transport system permease protein
D YPD4_1179 potG; putrescine transport ATP-binding protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D YPD4_2229 putative transport system periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D YPD4_1788 ABC transporter periplasmic binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D YPD4_1789 putative binding-protein-dependent transport system membrane protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D YPD4_2227 ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D YPD4_2228 putative ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D YPD4_1790 putative binding-protein-dependent transport system membrane protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D YPD4_2232 putative ABC-transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D YPD4_1791 MalK protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D YPD4_2379 proX; glycine betaine-binding periplasmic protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D YPD4_2378 proW; glycine betaine/L-proline transport system permease K02001 proW; glycine betaine/proline transport system permease protein
D YPD4_2377 proV; glycine betaine/L-proline transport ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D YPD4_1063 yehZ1; hypothetical protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D YPD4_1064 ABC type periplasmic choline/glycine/betaine binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D YPD4_1065 putative ABC transport integral membrane subunit K05846 opuBD; osmoprotectant transport system permease protein
D YPD4_1067 putative ABC transport integral membrane subunit K05846 opuBD; osmoprotectant transport system permease protein
D YPD4_1066 putative ABC transport ATP-binding subunit K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D YPD4_2000 hypothetical protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D YPD4_2001 putative transport system permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D YPD4_3266 malE; periplasmic maltose-binding protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D YPD4_3267 malF; maltose transport system permease protein MalF K10109 malF; maltose/maltodextrin transport system permease protein
D YPD4_3268 malG; maltose transport system permease protein MalG K10110 malG; maltose/maltodextrin transport system permease protein
D YPD4_3265 malK; maltose/maltodextrin transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPD4_2169 mtlK; putative mannitol transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPD4_0813 sugar transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPD4_1668 putative binding-protein-dependent transport system, ATP-binding component K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPD4_0531 transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPD4_3052 putative sugar ABC transporter, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPD4_0814 sugar-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D YPD4_0815 putative maltodextrin transport permease K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D YPD4_0816 maltodextrin permease protein K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D YPD4_1981 araF; L-arabinose-binding periplasmic protein precursor K10537 araF; L-arabinose transport system substrate-binding protein
D YPD4_1983 araH; L-arabinose transport system permease protein K10538 araH; L-arabinose transport system permease protein
D YPD4_1982 araG; L-arabinose transport ATP-binding protein K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12]
D YPD4_1529 putative sugar-binding protein K10192 togB; oligogalacturonide transport system substrate-binding protein
D YPD4_1532 ABC sugar transporter (permease) K10193 togM; oligogalacturonide transport system permease protein
D YPD4_1531 putative sugar ABC transporter (permease) K10194 togN; oligogalacturonide transport system permease protein
D YPD4_1530 putative sugar ABC transporter K10195 togA; oligogalacturonide transport system ATP-binding protein
D YPD4_1340 galactose-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein
D YPD4_1342 mglC; beta-methylgalactoside transporter inner membrane component K10541 mglC; methyl-galactoside transport system permease protein
D YPD4_1341 mglA; galactoside transport ATP-binding protein K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D YPD4_3551 sugar-binding periplasmic protein K10543 xylF; D-xylose transport system substrate-binding protein
D YPD4_3549 sugar transport system permease protein K10544 xylH; D-xylose transport system permease protein
D YPD4_3550 sugar transport ATP-binding protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D YPD4_0726 putative sugar ABC transporter periplasmic binding protein K10439 rbsB; ribose transport system substrate-binding protein
D YPD4_3484 sugar-binding transport protein K10439 rbsB; ribose transport system substrate-binding protein
D YPD4_2186 rbsB; sugar binding protein precursor K10439 rbsB; ribose transport system substrate-binding protein
D YPD4_0728 sugar transport system permease protein K10440 rbsC; ribose transport system permease protein
D YPD4_2184 rbsC; putative sugar transport system, permease protein K10440 rbsC; ribose transport system permease protein
D YPD4_3485 sugar transport system permease protein K10440 rbsC; ribose transport system permease protein
D YPD4_2185 rbsA; putative sugar transport system, ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPD4_3486 sugar transport ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPD4_0727 mglA; putative sugar transport ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPD4_3442 putative periplasmic protein precursor K23508 ytfQ; galactofuranose transport system substrate-binding protein
D YPD4_3439 putative sugar transport system permease K23509 ytfT; galactofuranose transport system permease protein
D YPD4_3440 sugar transport system permease K23509 ytfT; galactofuranose transport system permease protein
D YPD4_3441 putative sugar transport system ATP-binding protein K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D YPD4_2908 sugar ABC transporter, periplasmic protein K17202 eryG; erythritol transport system substrate-binding protein
D YPD4_2905 putative sugar ABC transporter, permease protein K17203 eryF; erythritol transport system permease protein
D YPD4_2906 putative sugar ABC transporter, ATP-binding protein K17204 eryE; erythritol transport system ATP-binding protein
D YPD4_0810 sugar-binding periplasmic protein K17205 xltC; putative xylitol transport system substrate-binding protein
D YPD4_0811 sugar transport system permease K17206 xltB; putative xylitol transport system permease protein
D YPD4_0812 sugar transport ATP-binding protein K17207 xltA; putative xylitol transport system ATP-binding protein
D YPD4_2435 putative sugar-binding periplasmic protein K17208 ibpA; inositol transport system substrate-binding protein
D YPD4_2433 sugar transport system permease protein K17209 iatP; inositol transport system permease protein
D YPD4_2434 rbsA; ATP-binding component of D-ribose high-affinity transport system K17210 iatA; inositol transport system ATP-binding protein
D YPD4_3343 ugpB; glycerol-3-phosphate-binding periplasmic protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D YPD4_3342 ugpA; sn-glycerol-3-phosphate transport system, permease protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D YPD4_3341 ugpE; sn-glycerol-3-phosphate transport system, permease protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D YPD4_3340 ugpC; sn-glycerol-3-phosphate transport, ATP-binding protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D YPD4_0354 putative periplasmic solute-binding protein K10555 lsrB; AI-2 transport system substrate-binding protein
D YPD4_0356 putative ABC transporter permease protein K10556 lsrC; AI-2 transport system permease protein
D YPD4_0355 putative ABC transporter permease protein K10557 lsrD; AI-2 transport system permease protein
D YPD4_0357 putative ABC transporter ATP-binding protein K10558 lsrA; AI-2 transport system ATP-binding protein
D YPD4_3185 hypothetical protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D YPD4_3184 hypothetical protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D YPD4_3183 putative ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D YPD4_3186 hypothetical protein K07323 mlaC; phospholipid transport system substrate-binding protein
D YPD4_3187 putative anti-sigma B factor antagonist K07122 mlaB; phospholipid transport system transporter-binding protein
D YPD4_1665 putative exported solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D YPD4_3055 putative sugar binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D YPD4_0534 sugar ABC transporter, periplasmic sugar-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D YPD4_2166 putative solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D YPD4_1666 putative binding-protein-dependent transport system, inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D YPD4_2165 sugar ABC transporter, permease protein K02025 ABC.MS.P; multiple sugar transport system permease protein
D YPD4_3054 sugar transport system, permease protein K02025 ABC.MS.P; multiple sugar transport system permease protein
D YPD4_0535 putative permease protein K02025 ABC.MS.P; multiple sugar transport system permease protein
D YPD4_1667 putative binding-protein-dependent transport system, inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D YPD4_2164 sugar ABC transporter, permease protein K02026 ABC.MS.P1; multiple sugar transport system permease protein
D YPD4_3053 sugar transport system, permease protein K02026 ABC.MS.P1; multiple sugar transport system permease protein
D YPD4_0536 putative permease K02026 ABC.MS.P1; multiple sugar transport system permease protein
D YPD4_3110 periplasmic binding protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D YPD4_2917 putative sugar ABC transporter, periplasmic protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D YPD4_1608 putative sugar-binding periplasmic protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D YPD4_1350 sugar ABC transporter K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D YPD4_1143 putative periplasmic carbohydrate-binding transport protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D YPD4_1607 sugar transport system permease protein K02057 ABC.SS.P; simple sugar transport system permease protein
D YPD4_1610 putative sugar ABC transporter, permease K02057 ABC.SS.P; simple sugar transport system permease protein
D YPD4_2919 putative sugar ABC transporter, permease protein K02057 ABC.SS.P; simple sugar transport system permease protein
D YPD4_2920 putative sugar ABC transporter, permease protein K02057 ABC.SS.P; simple sugar transport system permease protein
D YPD4_3098 putative carbohydrate transport protein K02057 ABC.SS.P; simple sugar transport system permease protein
D YPD4_3112 putative branched-chain amino acid transport system, permease component K02057 ABC.SS.P; simple sugar transport system permease protein
D YPD4_3113 putative ABC transporter, permease protein K02057 ABC.SS.P; simple sugar transport system permease protein
D YPD4_1145 putative ABC transport integral membrane subunit K02057 ABC.SS.P; simple sugar transport system permease protein
D YPD4_1383 ribose transport system, permease protein K02057 ABC.SS.P; simple sugar transport system permease protein
D YPD4_3111 ABC transporter ATP binding protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPD4_1609 putative sugar ABC transporter, ATP-binding protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPD4_2918 putative sugar ABC transporter, ATP-binding protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPD4_1144 putative ABC transport ATP-binding subunit K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPD4_1384 ATPase K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPD4_1385 hypothetical protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPD4_2807 pstS; phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D YPD4_3624 pstS; putative phosphate-binding periplasmic protein K02040 pstS; phosphate transport system substrate-binding protein
D YPD4_2221 putative phosphate transport system permease K02037 pstC; phosphate transport system permease protein
D YPD4_3623 pstC; putative phosphate transport system permease K02037 pstC; phosphate transport system permease protein
D YPD4_2220 pstA; putative phosphate transport system permease K02038 pstA; phosphate transport system permease protein
D YPD4_3622 phosphate transport system permease K02038 pstA; phosphate transport system permease protein
D YPD4_2219 pstb; putative phosphate transport ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D YPD4_3621 pstB; putative phosphate transport ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D YPD4_1051 putative substrate-binding periplasmic transport protein K02044 phnD; phosphonate transport system substrate-binding protein
D YPD4_1052 inner membrane permease of ABC transporter K02042 phnE; phosphonate transport system permease protein
D YPD4_1053 ABC transport membrane permease K02042 phnE; phosphonate transport system permease protein
D YPD4_1050 putative ABC transport ATP-binding subunit K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D YPD4_2514 hisM; histidine transport system permease protein HisM K10015 hisM; histidine transport system permease protein
D YPD4_2515 hisQ; histidine transport system permease protein HisQ K10016 hisQ; histidine transport system permease protein
D YPD4_2513 hisP; histidine transport ATP-binding protein HisP K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1]
D YPD4_2516 hisJ; histidine ABC transporter, periplasmic histidine-binding protein K10014 hisJ; histidine transport system substrate-binding protein
D YPD4_2197 glnH; glutamine ABC transporter periplasmic-binding protein K10036 glnH; glutamine transport system substrate-binding protein
D YPD4_2198 glnP; glutamine ABC transporter permease component K10037 glnP; glutamine transport system permease protein
D YPD4_2199 glnQ; glutamine ABC transporter ATP-binding component K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D YPD4_1185 hypothetical protein K09996 artJ; arginine transport system substrate-binding protein
D YPD4_1196 artI; arginine-binding periplasmic protein 1 precursor K09997 artI; arginine transport system substrate-binding protein
D YPD4_1194 artM; arginine transport system permease protein K09998 artM; arginine transport system permease protein
D YPD4_1195 artQ; arginine transport system permease protein K09999 artQ; arginine transport system permease protein
D YPD4_1197 artP; ATP-binding component of 3rd arginine transport system K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D YPD4_2405 glnH; putative amino acid-binding protein precursor K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D YPD4_2407 glutamate/aspartate transport system permease K10002 gltK; glutamate/aspartate transport system permease protein
D YPD4_2406 glutamate/aspartate transport system permease K10003 gltJ; glutamate/aspartate transport system permease protein
D YPD4_2408 putative glutamate/aspartate transport ATP-binding protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D YPD4_1637 fliY; putative cystine-binding periplasmic protein K02424 tcyA; L-cystine transport system substrate-binding protein
D YPD4_1638 putative amino-acid ABC transporter (permease) K10009 tcyB; L-cystine transport system permease protein
D YPD4_1639 putative amino-acid ABC transporter (ATP-binding protein) K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D YPD4_3355 livK; branched-chain amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D YPD4_3354 livH; high-affinity branched-chain amino acid transport system, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D YPD4_3353 livM; high-affinity branched-chain amino acid transport system, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D YPD4_3352 livG; high-affinity branched-chain amino acid transport, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D YPD4_3351 livF; high-affinity branched-chain amino acid transport, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D YPD4_0936 putative lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D YPD4_1167 hypothetical protein K02073 metQ; D-methionine transport system substrate-binding protein
D YPD4_0937 ABC transporter permease protein K02072 metI; D-methionine transport system permease protein
D YPD4_1169 putative ABC transport integral membrane subunit K02072 metI; D-methionine transport system permease protein
D YPD4_0938 ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D YPD4_1168 putative ABC transport ATP-binding subunit K02071 metN; D-methionine transport system ATP-binding protein
D YPD4_1055 putative substrate-binding periplasmic transport protein K11959 urtA; urea transport system substrate-binding protein
D YPD4_1056 putative Branched-chain amino acid transport system, permease component K11960 urtB; urea transport system permease protein
D YPD4_1057 putative Branched-chain amino acid transport system, permease component K11961 urtC; urea transport system permease protein
D YPD4_1058 putative ABC transport ATP-binding subunit K11962 urtD; urea transport system ATP-binding protein
D YPD4_1059 livF; ATP-binding component of ABC transporter K11963 urtE; urea transport system ATP-binding protein
D YPD4_1006 putative amino acid transporter K11963 urtE; urea transport system ATP-binding protein
D YPD4_3618 putative periplasmic solute-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D YPD4_2851 putative amino acid ABC transporter, periplasmic protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D YPD4_2849 putative amino acid ABC transporter, permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D YPD4_2850 putative amino acid ABC transporter, permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D YPD4_3616 putative amino acid transport system permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D YPD4_3617 ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D YPD4_2848 putative amino acid ABC transporter, ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D YPD4_1920 oppA; oligopeptide ABC transporter, periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D YPD4_2048 mppA; putative periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D YPD4_1921 oppB; oligopeptide permease ABC transporter membrane component K15581 oppB; oligopeptide transport system permease protein
D YPD4_1922 oppC; oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein
D YPD4_1923 oligopeptide transport ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D YPD4_1924 oppF; oligopeptide transport ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D YPD4_3522 periplasmic dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein
D YPD4_3521 dipeptide transport system permease protein K12369 dppB; dipeptide transport system permease protein
D YPD4_3520 dppC; dipeptide transport system permease protein K12370 dppC; dipeptide transport system permease protein
D YPD4_3519 dppD; dipeptide transport ATP-binding protein K12371 dppD; dipeptide transport system ATP-binding protein
D YPD4_3518 dppF; dipeptide transport ATP-binding protein K12372 dppF; dipeptide transport system ATP-binding protein
D YPD4_1490 sapA; peptide transport periplasmic protein precursor K19226 sapA; cationic peptide transport system substrate-binding protein
D YPD4_1489 sapB; peptide transport system permease protein K19227 sapB; cationic peptide transport system permease protein
D YPD4_1488 sapC; peptide transport system permease protein K19228 sapC; cationic peptide transport system permease protein
D YPD4_1487 sapD; peptide transport system ATP-binding protein K19229 sapD; cationic peptide transport system ATP-binding protein
D YPD4_1486 sapF; peptide transport system ATP-binding protein K19230 sapF; cationic peptide transport system ATP-binding protein
D YPD4_3031 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D YPD4_2368 yntA; nickel ABC transporter, periplasmic nickel-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D YPD4_3033 putative transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D YPD4_2367 dppB3; hypothetical protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D YPD4_3034 putative transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D YPD4_2366 binding-protein-dependent transport protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D YPD4_2365 putative transport ATPase K02031 ddpD; peptide/nickel transport system ATP-binding protein
D YPD4_3035 putative ABC transporter transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D YPD4_3036 dipeptide ABC transporter, ATP binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D YPD4_2364 putative transport ATPase K02032 ddpF; peptide/nickel transport system ATP-binding protein
D YPD4_1127 putative substrate-binding transport protein K13893 yejA; microcin C transport system substrate-binding protein
D YPD4_1126 putative ABC transporter integral membrane subunit K13894 yejB; microcin C transport system permease protein
D YPD4_1125 putative ABC transporter integral membrane subunit K13895 yejE; microcin C transport system permease protein
D YPD4_1124 putative ABC transporter ATP-binding subunit K13896 yejF; microcin C transport system ATP-binding protein
D YPD4_2975 fhuD; ferrichrome-binding periplasmic protein precursor K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D YPD4_2974 ferrichrome transport system permease protein FhuB K23228 fhuB; ferric hydroxamate transport system permease protein
D YPD4_2976 fhuC; ferrichrome transport ATP-binding protein FhuC K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D YPD4_0245 hmuT; hemin-binding periplasmic protein K25132 hmuT; heme transport system substrate-binding protein
D YPD4_0244 hmuU; hemin transport system permease protein HmuU K25133 hmuU; heme transport system permease protein
D YPD4_0243 tauB; putative taurine transport ATP-binding protein K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5]
D YPD4_0611 fepB; ferric enterobactin (enterochelin) binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein
D YPD4_1367 putative iron-siderophore transport system, periplasmic binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein
D YPD4_1366 putative iron-siderophore transport system, transmembrane component K23186 fepD; iron-siderophore transport system permease protein
D YPD4_1365 putative iron-siderophore transport system, membrane permease component K23187 fepG; iron-siderophore transport system permease protein
D YPD4_1364 fepC; ferric enterobactin ABC transporter, ATP-binding protein FepC K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D YPD4_3540 putative iron transport protein K25282 yclQ; iron-siderophore transport system substrate-binding protein
D YPD4_3542 putative iron transport permease K25283 yclO; iron-siderophore transport system permease protein
D YPD4_3541 iron transport permease K25284 yclN; iron-siderophore transport system permease protein
D YPD4_3543 putative iron ABC transporter, ATP-binding protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D YPD4_0730 hypothetical protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D YPD4_1160 putative periplasmic substrate-binding transport protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D YPD4_1161 ABC transporter, iron chelate uptake transporter (FeCT) family, permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D YPD4_1189 btuC1; FecCD transport family protein K02015 ABC.FEV.P; iron complex transport system permease protein
D YPD4_1162 putative siderophore ABC transporter, ATP-binding subunit K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D YPD4_1190 putative transport ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D YPD4_2969 priplasmic metal binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein
D YPD4_1427 btuC2; vtamin B12-transporter permease K06073 btuC; vitamin B12 transport system permease protein
D YPD4_1429 vitamin B12 transport ATP-binding protein K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8]
D YPD4_1821 znuA; exported high-affinity zinc uptake system protein K09815 znuA; zinc transport system substrate-binding protein
D YPD4_1819 znuB; high-affinity zinc uptake system membrane protein K09816 znuB; zinc transport system permease protein
D YPD4_1820 znuC; high-affinity zinc uptake system ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D YPD4_1418 periplasmic-binding protein K11604 sitA; manganese/iron transport system substrate-binding protein
D YPD4_1416 yfeC; chelated iron transport system membrane protein K11605 sitC; manganese/iron transport system permease protein
D YPD4_1415 yfeD; chelated iron transport system membrane protein K11606 sitD; manganese/iron transport system permease protein
D YPD4_1417 yfeB; ATP-binding transport protein K11607 sitB; manganese/iron transport system ATP-binding protein
D YPD4_3023 membrane protein K07091 lptF; lipopolysaccharide export system permease protein
D YPD4_3021 hypothetical protein K11720 lptG; lipopolysaccharide export system permease protein
D YPD4_3177 probable ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D YPD4_1030 ABC-type multidrug transport system, permease component K25180 ybhR; drug efflux transport system permease protein
D YPD4_1031 ABC transporter multidrug efflux pump, permease subunit K25181 ybhS; drug efflux transport system permease protein
D YPD4_1032 ccmA2; ABC-type multidrug transport system, ATPase component K25182 ybhF; drug efflux transport system ATP-binding protein
D YPD4_1033 acrA4; hypothetical protein K25183 ybhG; membrane fusion protein YbhG
D YPD4_2105 lipoprotein releasing system, transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D YPD4_2107 lipoprotein releasing system, transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D YPD4_2106 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D YPD4_2551 ccmD; putative heme exporter protein D K02196 ccmD; heme exporter protein D
D YPD4_2552 ccmC; putative heme exporter protein C K02195 ccmC; heme exporter protein C
D YPD4_2553 ccmB; heme exporter protein B K02194 ccmB; heme exporter protein B
D YPD4_2554 ccmA; putative heme exporter protein A K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D YPD4_3359 ftsX; cell division protein K09811 ftsX; cell division transport system permease protein
D YPD4_3360 ftsE; cell division ATP-binding protein K09812 ftsE; cell division transport system ATP-binding protein
D YPD4_2989 putative ABC transporter, integral membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D YPD4_2990 putative ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D YPD4_1711 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein
D YPD4_1712 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein
D YPD4_2699 permease K02004 ABC.CD.P; putative ABC transport system permease protein
D YPD4_1333 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein
D YPD4_1713 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D YPD4_2701 putative ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D YPD4_1331 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D YPD4_1449 putative ATP-dependent transporter K09013 sufC; Fe-S cluster assembly ATP-binding protein
D YPD4_1986 membrane protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D YPD4_0660 Sodium:sulfate symporter-family protein K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D YPD4_1458 transport protein K26939 norM; MATE family, multidrug efflux pump
D YPD4_1399 sugar transporter K26937 dinF; MATE family, multidrug efflux pump
D YPD4_1410 hypothetical protein K02532 lacY; MFS transporter, OHS family, lactose permease
D YPD4_0462 hypothetical protein K03291 MFS.SET; MFS transporter, SET family, sugar efflux transporter
D YPD4_1023 MFS family xanthosine permease K11537 xapB; MFS transporter, NHS family, xanthosine permease
D YPD4_1021 hypothetical protein K11537 xapB; MFS transporter, NHS family, xanthosine permease
D YPD4_0405 putative transport protein K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D YPD4_2643 putative sialic acid transporter K03290 nanT; MFS transporter, SHS family, sialic acid transporter
D YPD4_0506 exuT; ExuT transport protein K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter
D YPD4_0823 putative sugar transporter K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter
D YPD4_1566 hpaX; putative 4-hydroxyphenylacetate permease K02511 hpaX; MFS transporter, ACS family, 4-hydroxyphenylacetate permease
D YPD4_1392 transmembrane transporter K26580 rhmT; MFS transporter, ACS family, inner membrane transport protein
D YPD4_2286 putative transport permease protein K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D YPD4_3525 regulatory protein K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D YPD4_0871 hypothetical protein K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter
D YPD4_2772 ampG; Beta-lactamase induction signal transducer AmpG K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D YPD4_1122 bcr; probable drug resistance translocator protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D YPD4_1888 putative multidrug resistance protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D YPD4_3562 mdfA; multidrug translocase MdfA K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein
D YPD4_1799 hypothetical protein K08162 mdtH; MFS transporter, DHA1 family, multidrug resistance protein
D YPD4_0865 putative sugar transport protein K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D YPD4_2861 multidrug resistance protein B K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D YPD4_1521 transport protein K08169 yebQ; MFS transporter, DHA2 family, multidrug resistance protein
D YPD4_2236 yegB; hypothetical protein K18326 mdtD; MFS transporter, DHA2 family, multidrug resistance protein
D YPD4_2713 rosA; putative membrane efflux protein K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein
D YPD4_1992 hypothetical protein K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D YPD4_2071 hypothetical protein K26602 yihN; MFS transporter, GlpU family, inner membrane protein
D YPD4_1223 putative MFS family transporter protein K08219 UMF2; MFS transporter, UMF2 family, putative MFS family transporter protein
D YPD4_1682 ybtX; putative signal transducer K05373 ybtX; MFS transporter, putative signal transducer
D YPD4_0144 tsgA; major facilitator family transporter TsgA K06141 tsgA; MFS transporter, TsgA protein
D YPD4_2150 putative transporter protein K08368 yaaU; MFS transporter, putative metabolite transport protein
D YPD4_2623 ptsI; PTS system, enzyme I component K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D YPD4_0875 phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D YPD4_0351 phosphocarrier, HPr family K23991 ptsA; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.-]
D YPD4_1147 fruB; hypothetical protein K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D YPD4_2624 crr; glucose-specific PTS system enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D YPD4_2122 ptsG; PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D YPD4_0819 PTS transport protein K02778 ptsGb; glucose PTS system EIIB component [EC:2.7.1.199]
D YPD4_3168 treB; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D YPD4_1149 fruA; PTS system, fructose-specific IIBC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D YPD4_0348 PTS system, IIB component K11202 fryB; fructose-like PTS system EIIB component [EC:2.7.1.-]
D YPD4_0349 PTS system, IIB component K11202 fryB; fructose-like PTS system EIIB component [EC:2.7.1.-]
D YPD4_0350 PTS system, IIC component K11203 fryC; fructose-like PTS system EIIC or EIIBC or EIIABC component
D YPD4_2348 celC; PTS system, cellobiose-specific IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D YPD4_2350 celA; PTS system, cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D YPD4_2349 celB; PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D YPD4_1556 manX; PTS system, mannose-specific IIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D YPD4_1555 PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D YPD4_1554 PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component
D YPD4_0833 hypothetical protein K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D YPD4_0836 PTS transport protein K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D YPD4_0835 putative PTS permease protein K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D YPD4_0834 PTS permease protein K02747 agaE; N-acetylgalactosamine PTS system EIID component
D YPD4_2445 phosphotransferase enzyme II, A component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D YPD4_2508 ulaA; ascorbate-specific PTS system enzyme IIC K03475 ulaA; ascorbate PTS system EIIC component
D YPD4_3175 ptsN; phosphotransferase system enzyme IIA K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D YPD4_0085 glpF; glycerol uptake facilitator protein K02440 glpF; glycerol uptake facilitator
D YPD4_2353 putative potassium channel protein K10716 kch; voltage-gated potassium channel
D YPD4_2753 amt; ammonium transporter K03320 amt; ammonium transporter, Amt family
D YPD4_1482 gst; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D YPD4_1164 putative glutathione S-transferase-family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D YPD4_3196 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A
D YPD4_2634 membrane protein K07114 yfbK; Ca-activated chloride channel homolog
D YPD4_1228 focA; putative formate transporter 1 K06212 focA; formate transporter
D YPD4_0140 nirC; putative nitrite transporter K02598 nirC; nitrite transporter
D YPD4_0204 mscL; large-conductance mechanosensitive channel K03282 mscL; large conductance mechanosensitive channel
D YPD4_2742 potassium efflux system K05802 mscK; potassium-dependent mechanosensitive channel
D YPD4_0314 membrane transport protein K22051 mscM; miniconductance mechanosensitive channel
D YPD4_0762 hypothetical protein K03442 mscS; small conductance mechanosensitive channel
D YPD4_2159 membrane protein K16053 ybdG; miniconductance mechanosensitive channel
D YPD4_2224 mgtE; putative divalent cation transport protein K06213 mgtE; magnesium transporter
D YPD4_2356 putative urea transporter K08717 utp; urea transporter
D YPD4_0652 motA; flagellar motor protein K02556 motA; chemotaxis protein MotA
D YPD4_2076 motA; flagellar motor protein K02556 motA; chemotaxis protein MotA
D YPD4_0653 motB; flagellar motor protein K02557 motB; chemotaxis protein MotB
D YPD4_2075 motB1; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB
D YPD4_0592 MotA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB
D YPD4_0593 ExbD/TolR-family transport protein K03559 exbD; biopolymer transport protein ExbD
D YPD4_0974 tolQ; TolQ colicin import protein K03562 tolQ; biopolymer transport protein TolQ
D YPD4_0975 tolR; TolR colicin import membrane protein K03560 tolR; biopolymer transport protein TolR
D YPD4_3383 corA; magnesium and cobalt transport protein K03284 corA; magnesium transporter
D YPD4_2047 hypothetical protein K16074 zntB; zinc transporter
D YPD4_2351 membrane protein K06199 crcB; fluoride exporter
D YPD4_2352 ccrB; camphor resistance protein CrcB K06199 crcB; fluoride exporter
D YPD4_2423 membrane protein K06199 crcB; fluoride exporter
D YPD4_3228 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D YPD4_2889 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D YPD4_1253 putative outer membrane porin C protein K09476 ompF; outer membrane pore protein F
D YPD4_1071 ompC2; outer membrane protein C2 K11929 phoE; outer membrane pore protein E
D YPD4_1087 ompC; outer membrane protein C, porin K09475 ompC; outer membrane pore protein C
D YPD4_0820 lamB; maltoporin precursor K02024 lamB; maltoporin
D YPD4_3264 maltoporin K02024 lamB; maltoporin
D YPD4_1275 ompA; putative outer membrane porin A protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D YPD4_2191 ompX; outer membrane protein X K11934 ompX; outer membrane protein X
D YPD4_2287 ail; attachment invasion locus protein K16078 ail; attachment invasion locus protein
D YPD4_2544 long-chain fatty acid transport protein K06076 fadL; long-chain fatty acid transport protein
D YPD4_pMT0058 caf1A; putative F1 capsule anchoring protein K07347 fimD; outer membrane usher protein
D YPD4_1688 fimbrial usher protein K07347 fimD; outer membrane usher protein
D YPD4_1518 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPD4_1154 outer membrane usher protein PsaC precursor K07347 fimD; outer membrane usher protein
D YPD4_2577 hypothetical protein K07347 fimD; outer membrane usher protein
D YPD4_1506 probable outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPD4_3422 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPD4_0690 yapH; putative autotransporter protein K12678 aidA-I; autotransporter family porin
D YPD4_3444 vitamin B12 receptor protein K16092 btuB; vitamin B12 transporter
D YPD4_3455 hemophore HasA K12545 hasA; heme acquisition protein HasA
D YPD4_3456 putative TonB dependent receptor protein K16152 hasR; heme acquisition protein HasR
D YPD4_1673 fyuA; pesticin/yersiniabactin receptor protein K15721 fyuA; pesticin/yersiniabactin receptor
D YPD4_1368 ysuR; outer membrane iron/siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D YPD4_2927 hypothetical protein K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D YPD4_1163 putative outer membrane protein K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D YPD4_0247 hemin receptor precursor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D YPD4_1551 fcuA; ferrichrome receptor FcuA K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YPD4_0145 putative membrane receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YPD4_0699 iutA; putative ferric siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YPD4_0684 putative TonB-dependent outer membrane receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YPD4_0729 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YPD4_0574 ABC-transporter outer membrane component K12340 tolC; outer membrane protein
D YPD4_3062 outer membrane protein, efflux pump K18139 oprM; outer membrane protein, multidrug efflux system
D YPD4_0918 surface antigen K07277 SAM50; outer membrane protein insertion porin family
D YPD4_0919 surface antigen K07277 SAM50; outer membrane protein insertion porin family
D YPD4_2257 putative lipoprotein K17713 bamB; outer membrane protein assembly factor BamB
D YPD4_2684 dapX; lipoprotein K07287 bamC; outer membrane protein assembly factor BamC
D YPD4_2872 putative lipoprotein K05807 bamD; outer membrane protein assembly factor BamD
D YPD4_0960 hypothetical protein K06186 bamE; outer membrane protein assembly factor BamE
D YPD4_3230 hypothetical protein K07278 tamA; translocation and assembly module TamA
D YPD4_3231 hypothetical protein K09800 tamB; translocation and assembly module TamB
D YPD4_3515 hypothetical protein K22110 kdgM; oligogalacturonate-specific porin family protein
D YPD4_1528 hypothetical protein K22110 kdgM; oligogalacturonate-specific porin family protein
D YPD4_3178 hypothetical protein K09774 lptA; lipopolysaccharide export system protein LptA
D YPD4_3179 hypothetical protein K11719 lptC; lipopolysaccharide export system protein LptC
D YPD4_0432 imp; organic solvent tolerance protein K04744 lptD; LPS-assembly protein
D YPD4_2411 rlpB; rare lipoprotein B precursor K03643 lptE; LPS-assembly lipoprotein
D YPD4_pCD0018 yopB; secreted effector protein K23475 yopB; transloator
D YPD4_pCD0017 yopD; secreted effector protein K23476 yopD; transloator
D YPD4_0294 hypothetical protein K19298 subB; subtilase cytotoxin, subunit B
D YPD4_2403 membrane protein K06189 corC; hemolysin (HlyC) family protein
D YPD4_1347 hypothetical protein K06518 cidA; holin-like protein
D YPD4_1090 transport protein K16210 togT; oligogalacturonide transporter
D YPD4_1159 lysP; putative lysine-specific permease K11733 lysP; lysine-specific permease
D YPD4_1545 aroP; aromatic amino acid permease K11734 aroP; aromatic amino acid transport protein AroP
D YPD4_1546 aromatic amino acid transport protein K11734 aroP; aromatic amino acid transport protein AroP
D YPD4_3005 aroP; aromatic amino acid transport protein K11734 aroP; aromatic amino acid transport protein AroP
D YPD4_2805 proY; proline permease transport protein K11736 proY; proline-specific permease ProY
D YPD4_1648 D-serine/D-alanine/glycine transporter K11737 cycA; D-serine/D-alanine/glycine transporter
D YPD4_1704 ansP; L-asparagine permease K11738 ansP; L-asparagine permease
D YPD4_3533 amino acid permease K16234 hutT; histidine transporter
D YPD4_2019 putative amino acid antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D YPD4_1068 amino acid permease K03759 adiC; arginine:agmatine antiporter
D YPD4_0568 permease K16263 yjeH; amino acid efflux transporter
D YPD4_0982 cation transport protein K16264 czcD; cobalt-zinc-cadmium efflux system protein
D YPD4_0071 fieF; ferrous iron efflux protein F K13283 fieF; ferrous-iron efflux pump FieF
D YPD4_3063 multidrug efflux protein K18138 acrB; multidrug efflux pump
D YPD4_2747 multidrug efflux protein, RND family K18138 acrB; multidrug efflux pump
D YPD4_0693 putative integral membrane efflux protein K18138 acrB; multidrug efflux pump
D YPD4_2666 multidrug efflux protein K18324 acrD; multidrug efflux pump
D YPD4_2234 AcrB/AcrD/AcrF family membrane protein K07788 mdtB; multidrug efflux pump
D YPD4_2235 AcrB/AcrD/AcrF family membrane protein K07789 mdtC; multidrug efflux pump
D YPD4_2042 quaternary ammonium compound-resistance protein K03297 emrE; small multidrug resistance pump
D YPD4_0308 sugE; suppresses groEL, may be chaperone K11741 sugE; quaternary ammonium compound-resistance protein SugE
D YPD4_1829 integral membrane protein K11742 mdtI; spermidine export protein MdtI
D YPD4_1828 integral membrane protein K11743 mdtJ; spermidine export protein MdtJ
D YPD4_2343 hypothetical protein K08978 TC.BAT1; bacterial/archaeal transporter family protein
D YPD4_2192 integral membrane protein K11939 rhtA; inner membrane transporter RhtA
D YPD4_0293 rhaT; L-rhamnose-proton symport protein K02856 rhaT; L-rhamnose-H+ transport protein
D YPD4_3382 membrane protein K05786 rarD; chloramphenicol-sensitive protein RarD
D YPD4_1435 hypothetical protein K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE
D YPD4_0669 gluconate transporter K16321 gntP; high-affinity gluconate transporter
D YPD4_3477 gntT; putative gluconate permease K06155 gntT; Gnt-I system high-affinity gluconate transporter
D YPD4_3500 GntP family permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D YPD4_0301 dcuA; anaerobic C4-dicarboxylate transporter K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D YPD4_2880 hypothetical protein K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D YPD4_1017 high-affinity choline transport protein K02168 betT; choline/glycine/proline betaine transport protein
D YPD4_1724 chaA; calcium/proton antiporter K07300 chaA; Ca2+:H+ antiporter
D YPD4_3182 putative sodium/calcium exchanger protein K07301 yrbG; cation:H+ antiporter
D YPD4_3489 phosphate transport protein K16322 pit; low-affinity inorganic phosphate transporter
D YPD4_3130 panF; sodium/panthothenate symporter K14392 panF; sodium/pantothenate symporter
D YPD4_1642 putP; proline permease K11928 putP; sodium/proline symporter
D YPD4_0218 actP; acetate permease K14393 actP; cation/acetate symporter
D YPD4_0221 gltP; proton glutamate symport protein K11102 gltP; proton glutamate symport protein
D YPD4_3512 dctA; C4-dicarboxylate transport protein K11103 dctA; aerobic C4-dicarboxylate transport protein
D YPD4_0512 sstT; sodium/serine (threonine) transporter K07862 sstT; serine/threonine transporter
D YPD4_0034 gltS; sodium/glutamate symport carrier protein K03312 gltS; glutamate:Na+ symporter, ESS family
D YPD4_0410 sodium-proton antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family
D YPD4_1884 nhaB; Na+/H+ antiporter NhaB K03314 nhaB; Na+:H+ antiporter, NhaB family
D YPD4_3107 putative Na(+)/H(+) exchanger protein K24163 nhaK; monovalent cation/hydrogen antiporter
D YPD4_0168 potassium-efflux system protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D YPD4_0167 glutathione-regulated potassium-efflux system ancillary protein K11748 kefG; glutathione-regulated potassium-efflux system ancillary protein KefG
D YPD4_2714 rosB; putative potassium antiporter K26735 KEA4_5_6; K+:H+ antiporter
D YPD4_3311 trkH; Trk system potassium uptake protein TrkH K03498 trkH; trk/ktr system potassium uptake protein
D YPD4_0205 trkA; potassium transporter peripheral membrane component K03499 trkA; trk/ktr system potassium uptake protein
D YPD4_0032 putative membrane permease K16345 xanP; xanthine permease XanP
D YPD4_3106 putative xanthine/uracil permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D YPD4_3614 Xanthine/uracil permeases family protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D YPD4_2614 nupC; nucleoside permease K11535 nupC; nucleoside transport protein
D YPD4_1075 tyrP; tyrosine-specific transport protein K03834 tyrP; tyrosine-specific transport protein
D YPD4_1136 mtr; putative tryptophan-specific transport protein K03835 mtr; tryptophan-specific transport protein
D YPD4_1171 serine transporter K03837 sdaC; serine transporter
D YPD4_0241 putative transmembrane transport protein K26603 yhjV; inner membrane transport protein
D YPD4_2972 eriC1; chloride channel protein K03281 clcA; chloride channel protein, CIC family
D YPD4_1996 membrane protein K03281 clcA; chloride channel protein, CIC family
D YPD4_2355 putative nickel transport protein K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein
D YPD4_1785 hypothetical protein K03321 TC.SULP; sulfate permease, SulP family
D YPD4_1786 hypothetical protein K03321 TC.SULP; sulfate permease, SulP family
D YPD4_2613 mntH; putative manganese transport protein MntH K03322 mntH; manganese transport protein
D YPD4_2932 arsB; arsenical pump membrane protein K03893 arsB; arsenical pump membrane protein
D YPD4_3404 wzxE; putative lipopolysaccharide biosynthesis protein K16693 wzxE; enterobacterial common antigen flippase
D YPD4_1802 mviN; hypothetical protein K03980 murJ; putative peptidoglycan lipid II flippase
D YPD4_2255 hypothetical protein K13936 mdcF; malonate transporter and related proteins
D YPD4_3338 hypothetical protein K13936 mdcF; malonate transporter and related proteins
D YPD4_0006 kup; potassium transport protein K03549 kup; KUP system potassium uptake protein
D YPD4_0763 arginine exporter protein K06895 lysE; L-lysine exporter family protein LysE/ArgO
D YPD4_3377 homoserine/homoserine lactone efflux protein K05834 rhtB; homoserine/homoserine lactone efflux protein
D YPD4_3378 rhtC; threonine efflux protein K05835 rhtC; threonine efflux protein
D YPD4_0421 LysE type translocator K05835 rhtC; threonine efflux protein
D YPD4_2856 putative amino acid transporter K26605 azlC; branched chain amino acid efflux pump
D YPD4_2857 hypothetical protein K26606 azlD; branched chain amino acid efflux pump
D YPD4_3158 hypothetical protein K03468 aaeB; p-hydroxybenzoic acid efflux pump subunit AaeB
D YPD4_0540 hypothetical protein K15547 mdtO; multidrug resistance protein MdtO
D YPD4_2689 hypothetical protein K03548 perM; putative permease
D YPD4_3368 hypothetical protein K09125 yhhQ; queuosine precursor transporter
D YPD4_1420 marC; multiple antibiotic resistance protein K05595 marC; multiple antibiotic resistance protein
D YPD4_0484 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW
D YPD4_1552 hypothetical protein K23242 mntP; manganese efflux pump family protein
D YPD4_1643 hypothetical protein K07243 FTR; high-affinity iron transporter
D YPD4_1708 hypothetical protein K07243 FTR; high-affinity iron transporter
D YPD4_1644 hypothetical protein K07224 efeO; iron uptake system component EfeO
D YPD4_1645 hypothetical protein K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-]
D YPD4_1709 hypothetical protein K07230 p19; periplasmic iron binding protein
D YPD4_2282 hypothetical protein K08970 rcnA; nickel/cobalt transporter (NicO) family protein
D YPD4_1928 tonB; TonB protein K03832 tonB; periplasmic protein TonB
D YPD4_3452 hypothetical protein K03832 tonB; periplasmic protein TonB
D YPD4_0978 pal; peptidoglycan-associated lipoprotein Pal K03640 pal; peptidoglycan-associated lipoprotein
D YPD4_0976 tolA; cell envelope integrity inner membrane protein TolA K03646 tolA; colicin import membrane protein
D YPD4_0977 tolB; translocation protein TolB precursor K03641 tolB; TolB protein
D YPD4_2914 dmsA; anaerobic dimethyl sulfoxide reductase chain A K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D YPD4_2596 dmsA; putative dimethyl sulfoxide reductase chain A protein K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D YPD4_2913 dmsB; anaerobic dimethyl sulfoxide reductase chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D YPD4_2597 dmsB; putative dimethyl sulfoxide reductase chain B protein K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D YPD4_2912 dmsC; anaerobic dimethyl sulfoxide reductase chain C K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
D YPD4_2598 dmsC; putative dimethyl sulfoxide reductase chain C protein K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
D YPD4_0869 bisC; putative biotin sulfoxide reductas2 K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-]
D YPD4_2859 multidrug resistance protein A K03543 emrA; membrane fusion protein, multidrug efflux system
D YPD4_0541 putative HlyD family secretion protein K15549 mdtN; membrane fusion protein, multidrug efflux system
D YPD4_3453 HlyD family secretion protein K12537 hasE; membrane fusion protein, type I secretion system
D YPD4_1976 hypothetical protein K12532 rtxD; membrane fusion protein, RTX toxin transport system
D YPD4_0088 hypothetical protein K13408 cvaA; membrane fusion protein
D YPD4_3064 multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system
D YPD4_2745 acrA; acriflavine resistance protein A K03585 acrA; membrane fusion protein, multidrug efflux system
D YPD4_2233 putitive HlyD family secretion protein K07799 mdtA; membrane fusion protein, multidrug efflux system
D YPD4_1209 acrA5; putative HlyD family secretion protein K13888 macA; membrane fusion protein, macrolide-specific efflux system
D YPD4_2628 putative HlyD family secretion protein K13888 macA; membrane fusion protein, macrolide-specific efflux system
D YPD4_3157 putative HlyD family secretion protein K15548 aaeA; p-hydroxybenzoic acid efflux pump subunit AaeA
D YPD4_0981 pnuC; intergral membrane NMN transport protein PnuC K03811 pnuC; nicotinamide mononucleotide transporter
D YPD4_0114 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D YPD4_3491 uspB; universal stress protein UspB K06144 uspB; universal stress protein B
D YPD4_2549 ccmF; putative cytochrome c-type biogenesis protein K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D YPD4_2041 hypothetical protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D YPD4_2079 Mg(2+) transport ATPase protein C K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D YPD4_1581 putative copper resistance protein D K07245 pcoD; copper resistance protein D
D YPD4_1580 putative copper resistance protein K07156 copC; copper resistance protein C
D YPD4_1894 hypothetical protein K07274 mipA; MipA family protein
C 02044 Secretion system [BR:ypd02044]
D YPD4_0574 ABC-transporter outer membrane component K12340 tolC; outer membrane protein
D YPD4_1975 N-terminal fragment of inner membrane permease K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB
D YPD4_1978 putative toxin transport protein K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE
D YPD4_1976 hypothetical protein K12532 rtxD; membrane fusion protein, RTX toxin transport system
D YPD4_3454 ABC transporter protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D YPD4_3453 HlyD family secretion protein K12537 hasE; membrane fusion protein, type I secretion system
D YPD4_0088 hypothetical protein K13408 cvaA; membrane fusion protein
D YPD4_0087 hypothetical protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D YPD4_0849 general secretion pathway protein C K02452 gspC; general secretion pathway protein C
D YPD4_0850 general secretion protein K02453 gspD; general secretion pathway protein D
D YPD4_0851 general secretion pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D YPD4_0852 hofF; general protein secretion protein K02455 gspF; general secretion pathway protein F
D YPD4_0853 general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D YPD4_0854 gspJ; general secretion pathway protein J K02459 gspJ; general secretion pathway protein J
D YPD4_0855 general secretion pathway protein K K02460 gspK; general secretion pathway protein K
D YPD4_0856 L-like GSP protein K02461 gspL; general secretion pathway protein L
D YPD4_0858 prepilin peptidase K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D YPD4_0859 putative lipoprotein K02465 gspS; general secretion pathway protein S
D YPD4_2262 fimbrial biogenesis protein K02656 pilF; type IV pilus assembly protein PilF
D YPD4_0744 hypothetical protein K02669 pilT; twitching motility protein PilT
D YPD4_0605 hypothetical protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D YPD4_0604 hypothetical protein K02279 cpaB; pilus assembly protein CpaB
D YPD4_0603 hypothetical protein K02280 cpaC; pilus assembly protein CpaC
D YPD4_0601 hypothetical protein K02282 cpaE; pilus assembly protein CpaE
D YPD4_0600 putative type II secretion protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D YPD4_0599 hypothetical protein K12510 tadB; tight adherence protein B
D YPD4_0598 hypothetical protein K12511 tadC; tight adherence protein C
D YPD4_0597 hypothetical protein K12512 tadD; tight adherence protein D
D YPD4_0596 hypothetical protein K12513 tadE; tight adherence protein E
D YPD4_0595 hypothetical protein K12514 tadF; tight adherence protein F
D YPD4_0594 membrane protein K12515 tadG; tight adherence protein G
D YPD4_0880 putative prepilin peptidase dependent protein K02680 ppdB; prepilin peptidase dependent protein B
D YPD4_0882 putative prepilin peptidase dependent protein K02681 ppdC; prepilin peptidase dependent protein C
D YPD4_3009 ppdD; putative prepilin peptidase dependent protein D precursor K02682 ppdD; prepilin peptidase dependent protein D
D YPD4_3010 hofB; putative type II secretion system protein K02504 hofB; protein transport protein HofB
D YPD4_3011 type II secretion system protein K02505 hofC; protein transport protein HofC
D YPD4_0126 hypothetical protein K12288 hofM; pilus assembly protein HofM
D YPD4_0127 hypothetical protein K12289 hofN; pilus assembly protein HofN
D YPD4_0128 hypothetical protein K12290 hofO; pilus assembly protein HofO
D YPD4_0130 putative membrane transport protein K02507 hofQ; protein transport protein HofQ
D YPD4_0741 hypothetical protein K02221 yggT; YggT family protein
D YPD4_2763 hypothetical protein K02237 comEA; competence protein ComEA
D YPD4_1237 hypothetical protein K02238 comEC; competence protein ComEC
D YPD4_0224 possible type III secretion protein K03219 yscC; type III secretion protein C
D YPD4_pCD0038 yscC; outer membrane secretin precursor K03219 yscC; type III secretion protein C
D YPD4_0225 putative type-III secretion protein K03220 yscD; type III secretion protein D
D YPD4_pCD0040 yscD; virulence protein K03220 yscD; type III secretion protein D
D YPD4_pCD0043 lcrO; type III secretion apparatus component K04053 yscI; type III secretion protein I
D YPD4_0227 type III secretion system apparatus lipoprotein K03222 yscJ; type III secretion protein J
D YPD4_pCD0044 ylpB; needle complex inner membrane lipoprotein K03222 yscJ; type III secretion protein J
D YPD4_pCD0045 yscK; type III secretion apparatus component K04054 yscK; type III secretion protein K
D YPD4_pCD0046 yscL; type III secretion protein K03223 yscL; type III secretion protein L
D YPD4_0231 flagellum-specific ATP synthase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D YPD4_pCD0027 yscN; type III secretion system ATPase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D YPD4_pCD0028 yscO; type III secretion apparatus component K04056 yscO; type III secretion protein O
D YPD4_pCD0029 yscP; type III secretion apparatus component K04057 yscP; type III secretion protein P
D YPD4_0234 type III secretion protein K03225 yscQ; type III secretion protein Q
D YPD4_pCD0030 yscQ; type III secretion protein K03225 yscQ; type III secretion protein Q
D YPD4_0235 putative type III secretion apparatus protein K03226 yscR; type III secretion protein R
D YPD4_pCD0031 yscR; needle complex export protein K03226 yscR; type III secretion protein R
D YPD4_0236 type III secretion apparatus protein K03228 yscT; type III secretion protein T
D YPD4_pCD0032 yscT; needle complex export protein K03228 yscT; type III secretion protein T
D YPD4_0238 type III secretion apparatus protein K03229 yscU; type III secretion protein U
D YPD4_pCD0033 yscU; needle complex export protein K03229 yscU; type III secretion protein U
D YPD4_0230 secretion system apparatus protein K03230 yscV; type III secretion protein V
D YPD4_pCD0022 yscV; low calcium response protein D K03230 yscV; type III secretion protein V
D YPD4_pCD0026 lcrE; secretion control protein K04058 yscW; type III secretion protein W
D YPD4_pCD0024 yscX; hypothetical protein K04059 yscX; type III secretion protein X
D YPD4_pCD0036 yscB; type III secretion apparatus component K04049 yscB; type III secretion protein B
D YPD4_pCD0041 yscG; type III secretion apparatus component K04051 yscG; type III secretion protein G
D YPD4_pCD0042 yopR; secreted protein K04052 yscH; type III secretion protein H
D YPD4_pCD0047 lcrQ; LCR negative regulator K04055 yscM; type III secretion protein M
D YPD4_pCD0023 yscY; hypothetical protein K04060 yscY; type III secretion protein Y
D YPD4_1586 flhA; flagellar biosynthesis protein K02400 flhA; flagellar biosynthesis protein FlhA
D YPD4_0614 hypothetical protein K02400 flhA; flagellar biosynthesis protein FlhA
D YPD4_1585 flhB; flagellar biosynthesis protein K02401 flhB; flagellar biosynthesis protein FlhB
D YPD4_0615 flhB; flagellar biosynthesis protein K02401 flhB; flagellar biosynthesis protein FlhB
D YPD4_0622 fliF; flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF
D YPD4_1625 fliF; flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF
D YPD4_0624 flagellar assembly protein K02411 fliH; flagellar assembly protein FliH
D YPD4_1623 fliH; flagellar assembly protein K02411 fliH; flagellar assembly protein FliH
D YPD4_0625 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPD4_1621 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPD4_1622 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPD4_1616 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D YPD4_0618 fliN; flagellar switch protein K02417 fliN; flagellar motor switch protein FliN
D YPD4_1615 fliO; flagellar biosynthesis protein K02418 fliO; flagellar protein FliO/FliZ
D YPD4_1614 fliP; flagellar biosynthesis protein K02419 fliP; flagellar biosynthesis protein FliP
D YPD4_0617 fliP; putative flagellar assembly protein K02419 fliP; flagellar biosynthesis protein FliP
D YPD4_1613 fliR; flagellar biosynthesis protein K02421 fliR; flagellar biosynthesis protein FliR
D YPD4_0616 fliR; flagellar biosynthetic protein K02421 fliR; flagellar biosynthesis protein FliR
D YPD4_0789 dsbC; thiol:disulfide interchange protein (DsbC) K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D YPD4_0690 yapH; putative autotransporter protein K12678 aidA-I; autotransporter family porin
D YPD4_pCD0058 hypothetical protein K12341 yadA; adhesin YadA
D YPD4_1231 hypothetical protein K12342 yadB_C; adhesin YadB/C
D YPD4_1232 hypothetical protein K12342 yadB_C; adhesin YadB/C
D YPD4_1804 hemolysin activator protein K11017 shlB; hemolysin activation/secretion protein
D YPD4_3273 hemolysin activator protein K11017 shlB; hemolysin activation/secretion protein
D YPD4_3274 hlyA; putative hemolysin HlyA K11016 shlA; hemolysin
D YPD4_1805 hemolysin K11016 shlA; hemolysin
D YPD4_3082 hypothetical protein K11891 impL; type VI secretion system protein ImpL
D YPD4_2564 hypothetical protein K11891 impL; type VI secretion system protein ImpL
D YPD4_1315 hypothetical protein K11891 impL; type VI secretion system protein ImpL
D YPD4_0453 hypothetical protein K11891 impL; type VI secretion system protein ImpL
D YPD4_3077 hypothetical protein K11892 impK; type VI secretion system protein ImpK
D YPD4_0715 hypothetical protein K11892 impK; type VI secretion system protein ImpK
D YPD4_1303 hypothetical protein K11892 impK; type VI secretion system protein ImpK
D YPD4_0452 hypothetical protein K11892 impK; type VI secretion system protein ImpK
D YPD4_2568 type IV / VI secretion system protein, DotU family K11892 impK; type VI secretion system protein ImpK
D YPD4_3076 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ
D YPD4_0714 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ
D YPD4_2569 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ
D YPD4_1302 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ
D YPD4_0451 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ
D YPD4_3073 hypothetical protein K11895 impH; type VI secretion system protein ImpH
D YPD4_0442 hypothetical protein K11895 impH; type VI secretion system protein ImpH
D YPD4_2582 hypothetical protein K11895 impH; type VI secretion system protein ImpH
D YPD4_1320 hypothetical protein K11895 impH; type VI secretion system protein ImpH
D YPD4_0441 hypothetical protein K11896 impG; type VI secretion system protein ImpG
D YPD4_2581 hypothetical protein K11896 impG; type VI secretion system protein ImpG
D YPD4_1319 hypothetical protein K11896 impG; type VI secretion system protein ImpG
D YPD4_2560 hypothetical protein K11897 impF; type VI secretion system protein ImpF
D YPD4_0440 hypothetical protein K11897 impF; type VI secretion system protein ImpF
D YPD4_0713 hypothetical protein K11900 impC; type VI secretion system protein ImpC
D YPD4_2572 hypothetical protein K11900 impC; type VI secretion system protein ImpC
D YPD4_1301 hypothetical protein K11900 impC; type VI secretion system protein ImpC
D YPD4_0438 hypothetical protein K11900 impC; type VI secretion system protein ImpC
D YPD4_3260 hypothetical protein K11900 impC; type VI secretion system protein ImpC
D YPD4_0712 hypothetical protein K11901 impB; type VI secretion system protein ImpB
D YPD4_2573 hypothetical protein K11901 impB; type VI secretion system protein ImpB
D YPD4_1300 hypothetical protein K11901 impB; type VI secretion system protein ImpB
D YPD4_3261 hypothetical protein K11901 impB; type VI secretion system protein ImpB
D YPD4_0437 hypothetical protein K11901 impB; type VI secretion system protein ImpB
D YPD4_2583 hypothetical protein K11902 impA; type VI secretion system protein ImpA
D YPD4_0436 hypothetical protein K11902 impA; type VI secretion system protein ImpA
D YPD4_0718 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPD4_2571 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPD4_1305 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPD4_0439 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPD4_3262 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPD4_0720 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPD4_1307 vgrG1; hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPD4_2563 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPD4_0664 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPD4_3091 vgrG6; putative Rhs accessory genetic element K11904 vgrG; type VI secretion system secreted protein VgrG
D YPD4_3085 putative Rhs accessory genetic element K11904 vgrG; type VI secretion system secreted protein VgrG
D YPD4_0444 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPD4_3259 hypothetical protein K11905 K11905; type VI secretion system protein
D YPD4_1322 hypothetical protein K11905 K11905; type VI secretion system protein
D YPD4_2570 type VI secretion lipoprotein, family K11906 vasD; type VI secretion system protein VasD
D YPD4_3075 putative lipoprotein K11906 vasD; type VI secretion system protein VasD
D YPD4_1321 hypothetical protein K11906 vasD; type VI secretion system protein VasD
D YPD4_0450 lipoprotein K11906 vasD; type VI secretion system protein VasD
D YPD4_3078 clpB2; Clp ATPase K11907 vasG; type VI secretion system protein VasG
D YPD4_0719 putative ATPase subunit of ATP-dependent protease K11907 vasG; type VI secretion system protein VasG
D YPD4_1306 clpB3; Clp ATPase K11907 vasG; type VI secretion system protein VasG
D YPD4_0443 Clp ATPase K11907 vasG; type VI secretion system protein VasG
D YPD4_2580 clpB; putative Clp ATPase K11907 vasG; type VI secretion system protein VasG
D YPD4_3081 hypothetical protein K11910 vasJ; type VI secretion system protein VasJ
D YPD4_1316 hypothetical protein K11910 vasJ; type VI secretion system protein VasJ
D YPD4_3083 hypothetical protein K11911 vasL; type VI secretion system protein VasL
D YPD4_3084 hypothetical protein K11911 vasL; type VI secretion system protein VasL
D YPD4_1323 hypothetical protein K11911 vasL; type VI secretion system protein VasL
D YPD4_3074 hypothetical protein K11894 impI; type VI secretion system protein ImpI
D YPD4_2561 hypothetical protein K11898 impE; type VI secretion system protein ImpE
D YPD4_3080 hypothetical protein K11909 vasI; type VI secretion system protein VasI
D YPD4_1519 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPD4_1690 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPD4_2579 frimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPD4_1516 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPD4_3420 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPD4_1507 putative chaperone protein K07346 fimC; fimbrial chaperone protein
D YPD4_1520 putative chaperone protein K07346 fimC; fimbrial chaperone protein
D YPD4_3421 putative fimbrial chaperone K07346 fimC; fimbrial chaperone protein
D YPD4_pMT0058 caf1A; putative F1 capsule anchoring protein K07347 fimD; outer membrane usher protein
D YPD4_1688 fimbrial usher protein K07347 fimD; outer membrane usher protein
D YPD4_1518 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPD4_1154 outer membrane usher protein PsaC precursor K07347 fimD; outer membrane usher protein
D YPD4_2577 hypothetical protein K07347 fimD; outer membrane usher protein
D YPD4_1506 probable outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPD4_3422 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPD4_1508 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPD4_1505 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPD4_1509 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPD4_0608 outer membrane usher protein K12518 papC; outer membrane usher protein PapC
D YPD4_3557 hypothetical protein K12518 papC; outer membrane usher protein PapC
D YPD4_0609 fimbrial chaperone protein K12519 papD; chaperone protein PapD
D YPD4_0494 secA; translocase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YPD4_0062 secB; export protein SecB K03071 secB; preprotein translocase subunit SecB
D YPD4_2796 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D YPD4_2795 secF; protein export protein SecF K03074 secF; preprotein translocase subunit SecF
D YPD4_0493 SecA regulator SecM K13301 secM; secretion monitor
D YPD4_0197 preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D YPD4_2887 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D YPD4_3361 ftsY; cell division protein K03110 ftsY; fused signal recognition particle receptor
D YPD4_2797 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D YPD4_3610 membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YPD4_3326 tatB; Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D YPD4_3325 tatC; Sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:ypd02042]
D YPD4_0294 hypothetical protein K19298 subB; subtilase cytotoxin, subunit B
D YPD4_3146 putative insecticidal toxin K11021 tccC; insecticidal toxin complex protein TccC
D YPD4_3147 tccC1; toxin subunit K11021 tccC; insecticidal toxin complex protein TccC
D YPD4_2025 putative insecticidal toxin complex K11021 tccC; insecticidal toxin complex protein TccC
D YPD4_1470 sepC; insecticidal toxin K11021 tccC; insecticidal toxin complex protein TccC
D YPD4_3228 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D YPD4_2889 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D YPD4_3274 hlyA; putative hemolysin HlyA K11016 shlA; hemolysin
D YPD4_1805 hemolysin K11016 shlA; hemolysin
D YPD4_1804 hemolysin activator protein K11017 shlB; hemolysin activation/secretion protein
D YPD4_3273 hemolysin activator protein K11017 shlB; hemolysin activation/secretion protein
D YPD4_0780 putative hemolysin III K11068 hlyIII; hemolysin III
D YPD4_pMT0065 murine toxin K11009 ymt; murine toxin
C 02022 Two-component system [BR:ypd02022]
D YPD4_2808 phoR; phosphate regulon sensor protein PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D YPD4_2809 phoB; positive response regulator for pho regulon K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D YPD4_2636 response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D YPD4_2100 phoQ; sensor protein kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D YPD4_2099 phoP; response regulator protein K07660 phoP; two-component system, OmpR family, response regulator PhoP
D YPD4_0118 envZ; osmolarity sensor protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D YPD4_0117 ompR; osmolarity response regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D YPD4_2022 two-component regulatory system, sensor kinase protein K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D YPD4_2021 rstA; two-component regulatory system, response regulator protein K07661 rstA; two-component system, OmpR family, response regulator RstA
D YPD4_0067 two component sensor kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D YPD4_0068 cpxR; two component system response regulatory protein K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D YPD4_0785 creC; putative histidine kinase sensor K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D YPD4_0784 response regulator K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB
D YPD4_2237 hypothetical protein K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D YPD4_2238 baeR; transcriptional response regulatory protein (sensor BaeS) K07664 baeR; two-component system, OmpR family, response regulator BaeR
D YPD4_3243 basS; two-component system sensor protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D YPD4_3244 basR; two-component system response regulator K07771 basR; two-component system, OmpR family, response regulator BasR
D YPD4_1764 two-component system sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D YPD4_1765 copR; transcriptional activator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D YPD4_2341 kdpD; two-component regulatory protein sensor kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D YPD4_2342 kdpE; two-component regulatory protein response regulator KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D YPD4_3202 arcB; aerobic respiration control sensor/response regulatory protein K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D YPD4_0397 arcA; aerobic respiration control protein K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D YPD4_2626 putative two-component system sensor kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D YPD4_2627 putative two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D YPD4_1725 narX; nitrate/nitrite sensor protein K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D YPD4_2665 narP; nitrate/nitrite response regulator protein NarP K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D YPD4_3526 ATP-binding region, ATPase-like protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D YPD4_3529 hypothetical protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D YPD4_3530 uhpA; two-component system response regulator K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D YPD4_1404 putative GerR-family transcriptional regulatory protein K20264 fusR; two-component system, NarL family, response regulator FusR
D YPD4_1082 two component sensor kinase/response regulator protein RcsC K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D YPD4_1084 two-component sensor protein like yojN K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D YPD4_1085 hypothetical protein K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D YPD4_1083 rcsB; probable two component response regulator component B K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D YPD4_2964 two-component regulatory protein K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D YPD4_1651 uvrY; response regulator K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D YPD4_1691 Histidine protein kinase sensor K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D YPD4_1692 putative two-component response regulator K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ
D YPD4_3471 hypothetical protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D YPD4_2879 two-component system response regulator K02477 K02477; two-component system, LytTR family, response regulator
D YPD4_0022 ntrB; Two component regulatory protein involved in nitrogen assimilation K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D YPD4_0021 ntrC; nitrogen regulation protein K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D YPD4_1025 PAS protein K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D YPD4_1026 hydG; transcriptional regulatory protein hydG K07713 zraR; two-component system, NtrC family, response regulator HydG
D YPD4_2296 Putative sensor-like histidine kinase YfhK K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D YPD4_2294 two-component system response regulator K07715 glrR; two-component system, NtrC family, response regulator GlrR
D YPD4_2073 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YPD4_2060 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YPD4_2061 cheB; chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YPD4_0223 two-component sensor/regulator K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA
D YPD4_0222 putative two-component response regulator K14979 ssrB; two-component system, LuxR family, secretion system response regulator SsrB
D YPD4_0620 sigma-54 transcriptional regulatory protein K10943 flrC; two-component system, response regulator FlrC
D YPD4_1911 probable response regulator K02485 rssB; two-component system, response regulator
C 02035 Bacterial motility proteins [BR:ypd02035]
D YPD4_2073 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YPD4_2072 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D YPD4_2062 cheR; chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D YPD4_2061 cheB; chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YPD4_2060 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YPD4_2059 cheZ; chemotaxis protein CheZ K03414 cheZ; chemotaxis protein CheZ
D YPD4_2200 chemotactic transducer K03406 mcp; methyl-accepting chemotaxis protein
D YPD4_1092 tsr2; putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YPD4_2064 cheD; methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPD4_0861 methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPD4_3575 tar; methyl-accepting chemotaxis protein II K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D YPD4_2080 hypothetical protein K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D YPD4_2081 methyl-accepting chemotaxis protein III (MCP-III) K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D YPD4_2063 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor
D YPD4_2090 putative methyl-accepting chemotaxis protein K03776 aer; aerotaxis receptor
D YPD4_0624 flagellar assembly protein K02411 fliH; flagellar assembly protein FliH
D YPD4_1623 fliH; flagellar assembly protein K02411 fliH; flagellar assembly protein FliH
D YPD4_0625 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPD4_1621 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPD4_1622 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPD4_1620 fliJ; flagellar protein K02413 fliJ; flagellar protein FliJ
D YPD4_1615 fliO; flagellar biosynthesis protein K02418 fliO; flagellar protein FliO/FliZ
D YPD4_1614 fliP; flagellar biosynthesis protein K02419 fliP; flagellar biosynthesis protein FliP
D YPD4_0617 fliP; putative flagellar assembly protein K02419 fliP; flagellar biosynthesis protein FliP
D YPD4_1613 fliR; flagellar biosynthesis protein K02421 fliR; flagellar biosynthesis protein FliR
D YPD4_0616 fliR; flagellar biosynthetic protein K02421 fliR; flagellar biosynthesis protein FliR
D YPD4_1586 flhA; flagellar biosynthesis protein K02400 flhA; flagellar biosynthesis protein FlhA
D YPD4_0614 hypothetical protein K02400 flhA; flagellar biosynthesis protein FlhA
D YPD4_1585 flhB; flagellar biosynthesis protein K02401 flhB; flagellar biosynthesis protein FlhB
D YPD4_0615 flhB; flagellar biosynthesis protein K02401 flhB; flagellar biosynthesis protein FlhB
D YPD4_1587 flhE; flagellar protein FlhE precursor K03516 flhE; flagellar protein FlhE
D YPD4_0623 flagellar motor protein K02410 fliG; flagellar motor switch protein FliG
D YPD4_1624 fliG; flagellar motor protein K02410 fliG; flagellar motor switch protein FliG
D YPD4_0619 hypothetical protein K02416 fliM; flagellar motor switch protein FliM
D YPD4_1617 fliM; flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D YPD4_1616 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D YPD4_0618 fliN; flagellar switch protein K02417 fliN; flagellar motor switch protein FliN
D YPD4_0622 fliF; flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF
D YPD4_1625 fliF; flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF
D YPD4_1601 flgI; flagellar P-ring protein precursor K02394 flgI; flagellar P-ring protein FlgI
D YPD4_0637 flgI; flagellar P-ring protein precursor K02394 flgI; flagellar P-ring protein FlgI
D YPD4_1593 flgA; flagellar basal body P-ring biosynthesis protein K02386 flgA; flagellar basal body P-ring formation protein FlgA
D YPD4_0628 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D YPD4_1600 flgH; flagellar L-ring protein precursor K02393 flgH; flagellar L-ring protein FlgH
D YPD4_0636 flgH; flagellar L-ring protein precursor K02393 flgH; flagellar L-ring protein FlgH
D YPD4_1618 flagellar protein FliL K02415 fliL; flagellar protein FliL
D YPD4_0650 putative flagellar biogenesis protein K02415 fliL; flagellar protein FliL
D YPD4_0621 fliE; putative flagellar hook-basal body complex protein K02408 fliE; flagellar hook-basal body complex protein FliE
D YPD4_1626 fliE1; flagellar basal body protein K02408 fliE; flagellar hook-basal body complex protein FliE
D YPD4_0649 putative flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D YPD4_1619 fliK; flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D YPD4_1594 flgB; flagellar basal body rod protein K02387 flgB; flagellar basal-body rod protein FlgB
D YPD4_0629 flgB; flagellar basal body rod protein K02387 flgB; flagellar basal-body rod protein FlgB
D YPD4_1595 flgC; flagellar basal body rod protein K02388 flgC; flagellar basal-body rod protein FlgC
D YPD4_0630 flgC; flagellar basal body rod protein K02388 flgC; flagellar basal-body rod protein FlgC
D YPD4_1596 flgD; basal-body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D YPD4_0631 flgD; flagellar basal body rod modification protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D YPD4_1598 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D YPD4_0634 hypothetical protein K02391 flgF; flagellar basal-body rod protein FlgF
D YPD4_1599 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D YPD4_0635 flgG; putative flagellar basal-body rod protein K02392 flgG; flagellar basal-body rod protein FlgG
D YPD4_1602 flgJ; flagellar biosynthesis protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D YPD4_1597 flgE; flagellar hook protein K02390 flgE; flagellar hook protein FlgE
D YPD4_0632 flgE; flagellar hook protein K02390 flgE; flagellar hook protein FlgE
D YPD4_1603 flgK; flagellar hook-associated protein K02396 flgK; flagellar hook-associated protein 1
D YPD4_0638 flgK; flagellar hook-associated protein K02396 flgK; flagellar hook-associated protein 1
D YPD4_1604 flgL; flagellar hook-associated protein K02397 flgL; flagellar hook-associated protein 3 FlgL
D YPD4_0639 flgL; flagellar hook-associated protein K02397 flgL; flagellar hook-associated protein 3 FlgL
D YPD4_1591 flgN; flagella synthesis protein FlgN K02399 flgN; flagellar biosynthesis protein FlgN
D YPD4_0627 hypothetical protein K02399 flgN; flagellar biosynthesis protein FlgN
D YPD4_2217 hypothetical protein K18475 fliB; lysine-N-methylase [EC:2.1.1.-]
D YPD4_2218 hypothetical protein K18475 fliB; lysine-N-methylase [EC:2.1.1.-]
D YPD4_0643 flaA1; putative flagellin K02406 fliC; flagellin
D YPD4_0644 flaA2; putative flagellin K02406 fliC; flagellin
D YPD4_0645 flaA3; putative flagellin K02406 fliC; flagellin
D YPD4_1633 fliC; flagellin K02406 fliC; flagellin
D YPD4_0646 fliD; putative flagellar hook-associated protein K02407 fliD; flagellar hook-associated protein 2
D YPD4_1632 fliD; flagellar hook-associated protein K02407 fliD; flagellar hook-associated protein 2
D YPD4_0647 fliS; putative flagellar protein K02422 fliS; flagellar secretion chaperone FliS
D YPD4_1631 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D YPD4_2077 flagellum biosynthesis transcription activator K02402 flhC; flagellar transcriptional activator FlhC
D YPD4_0651 fliA; flagellar biosynthesis sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
D YPD4_1634 fliA; flagellar biosynthesis sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
D YPD4_0652 motA; flagellar motor protein K02556 motA; chemotaxis protein MotA
D YPD4_2076 motA; flagellar motor protein K02556 motA; chemotaxis protein MotA
D YPD4_0653 motB; flagellar motor protein K02557 motB; chemotaxis protein MotB
D YPD4_2075 motB1; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB
D YPD4_0620 sigma-54 transcriptional regulatory protein K10943 flrC; two-component system, response regulator FlrC
D YPD4_1637 fliY; putative cystine-binding periplasmic protein K02424 tcyA; L-cystine transport system substrate-binding protein
D YPD4_1635 fliZ; putative alternative sigma factor regulatory protein K02425 fliZ; regulator of sigma S factor FliZ
D YPD4_1592 flgM; negative regulator of flagellin synthesis K02398 flgM; negative regulator of flagellin synthesis FlgM
D YPD4_0744 hypothetical protein K02669 pilT; twitching motility protein PilT
D YPD4_2262 fimbrial biogenesis protein K02656 pilF; type IV pilus assembly protein PilF
D YPD4_0605 hypothetical protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D YPD4_0604 hypothetical protein K02279 cpaB; pilus assembly protein CpaB
D YPD4_0603 hypothetical protein K02280 cpaC; pilus assembly protein CpaC
D YPD4_0601 hypothetical protein K02282 cpaE; pilus assembly protein CpaE
D YPD4_0600 putative type II secretion protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D YPD4_1519 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPD4_1690 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPD4_2579 frimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPD4_1516 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPD4_3420 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPD4_1507 putative chaperone protein K07346 fimC; fimbrial chaperone protein
D YPD4_1520 putative chaperone protein K07346 fimC; fimbrial chaperone protein
D YPD4_3421 putative fimbrial chaperone K07346 fimC; fimbrial chaperone protein
D YPD4_pMT0058 caf1A; putative F1 capsule anchoring protein K07347 fimD; outer membrane usher protein
D YPD4_1688 fimbrial usher protein K07347 fimD; outer membrane usher protein
D YPD4_1518 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPD4_1154 outer membrane usher protein PsaC precursor K07347 fimD; outer membrane usher protein
D YPD4_2577 hypothetical protein K07347 fimD; outer membrane usher protein
D YPD4_1506 probable outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPD4_3422 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPD4_1508 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPD4_1505 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPD4_1509 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:ypd04812]
D YPD4_3138 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D YPD4_0490 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D YPD4_0489 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D YPD4_1837 minC; septum formation inhibitor K03610 minC; septum site-determining protein MinC
D YPD4_1836 minD; septum site-determining protein K03609 minD; septum site-determining protein MinD
D YPD4_pCD0006 plasmid partitioning transcription repressor K03496 parA; chromosome partitioning protein
D YPD4_pMT0069 parA; putative partitioning protein A K03496 parA; chromosome partitioning protein
D YPD4_pMT0070 parB; partitioning protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YPD4_pMT0076 putative DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YPD4_pCD0005 plasmid partition protein, ParB family K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:ypd04147]
D YPD4_2736 htpG; heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
D YPD4_2960 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YPD4_1896 glyceraldehyde 3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D YPD4_0760 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D YPD4_1824 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPD4_1457 pykF; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPD4_0148 ppiA; peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D YPD4_2801 ahpC; putative alkyl hydroperoxide reductase subunit c K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D YPD4_0304 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YPD4_0408 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D YPD4_3270 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YPD4_2253 guaB; inositol-5-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D YPD4_0177 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D YPD4_3304 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D YPD4_2119 hypothetical protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D YPD4_1986 membrane protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D YPD4_0470 AMP binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPD4_1834 long-chain-fatty-acid-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPD4_2735 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D YPD4_2740 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D YPD4_3537 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D YPD4_3457 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D YPD4_1398 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D YPD4_1061 putative pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D YPD4_3234 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YPD4_0989 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D YPD4_3470 glgB; glycogen branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D YPD4_0084 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D YPD4_2902 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D YPD4_0023 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPD4_3320 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D YPD4_2012 phoA; alkaline phosphatase precursor K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D YPD4_0767 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPD4_1138 D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPD4_3282 PurH protein: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D YPD4_3001 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPD4_3451 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPD4_1826 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D YPD4_0079 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D YPD4_0986 gpmA; phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:ypd02048]
D YPD4_2158 hypothetical protein K15342 cas1; CRISP-associated protein Cas1
D YPD4_2157 hypothetical protein K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D YPD4_2156 hypothetical protein K19127 csy1; CRISPR-associated protein Csy1
D YPD4_2155 hypothetical protein K19128 csy2; CRISPR-associated protein Csy2
D YPD4_2154 hypothetical protein K19129 csy3; CRISPR-associated protein Csy3
D YPD4_2153 hypothetical protein K19130 csy4; CRISPR-associated endonuclease Csy4 [EC:3.1.-.-]
D YPD4_0135 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPD4_1844 putative methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPD4_pMT0072 putative DNA methylase K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D YPD4_0337 hypothetical protein K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-]
D YPD4_0338 hypothetical protein K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC
D YPD4_2604 hypothetical protein K18843 hicB; antitoxin HicB
D YPD4_2749 hypothetical protein K19162 tomB; hha toxicity modulator TomB
D YPD4_1494 pspC; phage shock protein C K03973 pspC; phage shock protein C
D YPD4_pCD0004 hypothetical protein K19092 parE1_3_4; toxin ParE1/3/4
D YPD4_0795 hypothetical protein K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA
D YPD4_3030 hypothetical protein K19334 tabA; biofilm protein TabA
D YPD4_2470 hypothetical protein K19334 tabA; biofilm protein TabA
D YPD4_0490 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D YPD4_3138 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D YPD4_0582 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D YPD4_0579 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D YPD4_2615 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YPD4_0783 hypothetical protein K19168 cptA; toxin CptA
D YPD4_1880 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPD4_2276 aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPD4_2277 aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels [BR:ypd04040]
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:ypd04090]
C 01504 Antimicrobial resistance genes [BR:ypd01504]
D YPD4_3562 mdfA; multidrug translocase MdfA K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein
D YPD4_1764 two-component system sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D YPD4_1765 copR; transcriptional activator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D YPD4_2100 phoQ; sensor protein kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D YPD4_2099 phoP; response regulator protein K07660 phoP; two-component system, OmpR family, response regulator PhoP
D YPD4_3064 multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system
D YPD4_2745 acrA; acriflavine resistance protein A K03585 acrA; membrane fusion protein, multidrug efflux system
D YPD4_3063 multidrug efflux protein K18138 acrB; multidrug efflux pump
D YPD4_2747 multidrug efflux protein, RND family K18138 acrB; multidrug efflux pump
D YPD4_0693 putative integral membrane efflux protein K18138 acrB; multidrug efflux pump
D YPD4_3062 outer membrane protein, efflux pump K18139 oprM; outer membrane protein, multidrug efflux system
D YPD4_2707 cueR; putative regulatory protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D YPD4_0574 ABC-transporter outer membrane component K12340 tolC; outer membrane protein
D YPD4_1253 putative outer membrane porin C protein K09476 ompF; outer membrane pore protein F
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins [BR:ypd00536]
D YPD4_0526 putative hemolysin K15125 fhaB; filamentous hemagglutinin
D YPD4_2176 adhesin K15125 fhaB; filamentous hemagglutinin
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:ypd00537]
D YPD4_2012 phoA; alkaline phosphatase precursor K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins [BR:ypd03200]
D YPD4_1849 rzpR; putative prophage endopeptidase K14744 rzpD; prophage endopeptidase [EC:3.4.-.-]
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:ypd03100]
D YPD4_t54 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPD4_t44 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPD4_t45 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPD4_t39 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPD4_t48 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPD4_t47 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPD4_t64 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPD4_t32 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPD4_t20 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPD4_t28 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPD4_t23 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPD4_t12 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPD4_t66 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPD4_t13 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPD4_t26 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D YPD4_t35 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPD4_t36 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPD4_t38 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPD4_t1 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPD4_t11 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPD4_t46 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPD4_t60 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPD4_t67 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPD4_t57 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPD4_t8 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPD4_t25 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPD4_t4 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPD4_t3 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPD4_t63 tRNA-His K14226 tRNA-His; tRNA His
D YPD4_t55 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YPD4_t34 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPD4_t27 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPD4_t62 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPD4_t5 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPD4_t51 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPD4_t50 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPD4_r7 unknown K14229 tRNA-Lys; tRNA Lys
D YPD4_t14 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPD4_t40 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPD4_t15 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPD4_t24 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPD4_t33 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPD4_t37 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPD4_t10 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPD4_t52 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPD4_t9 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPD4_t6 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPD4_t2 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D YPD4_t7 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D YPD4_t18 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPD4_t61 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPD4_t68 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPD4_t16 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPD4_t19 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPD4_t49 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPD4_t30 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPD4_t29 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPD4_t53 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPD4_t56 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPD4_t17 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPD4_t59 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPD4_t65 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D YPD4_t31 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YPD4_t58 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YPD4_t41 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPD4_t43 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPD4_t42 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPD4_t21 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPD4_t22 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPD4_t69 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D YPD4_r1 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPD4_r20 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPD4_r10 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPD4_r4 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPD4_r17 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPD4_r14 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPD4_r2 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPD4_r19 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPD4_r16 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPD4_r5 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPD4_r13 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPD4_r9 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPD4_r3 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPD4_r8 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPD4_r15 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPD4_r12 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPD4_r18 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPD4_r6 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPD4_r11 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D YPD4_2472 idnO; gluconate 5-dehydrogenase K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69]
D YPD4_0587 putative aldo/keto reductase family protein K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D YPD4_2493 aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D YPD4_0940 putative aldo/keto reductase K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346]
D YPD4_1965 hypothetical protein K22025 denD; D-erythronate 2-dehydrogenase [EC:1.1.1.410]
D YPD4_1386 oxidoreductase K08317 hcxA; hydroxycarboxylate dehydrogenase A [EC:1.1.1.-]
D YPD4_2611 putative ion channel protein K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D YPD4_2187 gutB; putative zinc-binding dehydrogenase K23271 eltD; erythritol/L-threitol dehydrogenase [EC:1.1.1.-]
D YPD4_2937 Zinc-binding dehydrogenase K23271 eltD; erythritol/L-threitol dehydrogenase [EC:1.1.1.-]
D YPD4_0270 putative oxidoreductase K26080 E1.1.3.29; N-acylhexosamine oxidase [EC:1.1.3.29]
D YPD4_2152 putative oxidoreductase K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-]
D YPD4_0517 fadH; 2,4-dienoyl-CoA reductase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D YPD4_2142 solA; putative sarcosine oxidase K02846 solA; N-methyl-L-tryptophan oxidase [EC:1.5.3.-]
D YPD4_0279 qor; quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D YPD4_2083 probable Zinc-binding dehydrogenase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D YPD4_0581 mdaB; putative modulator of drug activity K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10]
D YPD4_2033 acpD; acyl carrier protein phosphodiesterase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D YPD4_3229 msrA; methionine sulfoxide reductase A K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D YPD4_1897 methionine sulfoxide reductase B K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D YPD4_3116 putative glutathione S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D YPD4_3212 transferase K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D YPD4_3135 hypothetical protein K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D YPD4_2687 bacterioferritin comigratory protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D YPD4_1502 tpx; thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D YPD4_2651 hypothetical protein K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D YPD4_3479 hypothetical protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D YPD4_1889 hypothetical protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D YPD4_2289 hmp; flavohemoprotein K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17]
D YPD4_2179 putative dioxygenase alpha subunit K22443 cntA; carnitine monooxygenase subunit [EC:1.14.13.239]
D YPD4_2178 oxidoreductase FAD/NAD binding/2Fe-2S iron-sulfur cluster binding domain protein K22444 cntB; carnitine monooxygenase subunit [EC:1.14.13.239]
D YPD4_1579 ftnA; ferritin K02217 ftnA; ferritin [EC:1.16.3.2]
D YPD4_2993 hypothetical protein K14588 cueO; cuproxidase [EC:1.16.3.4]
D YPD4_0082 fpr; ferredoxin--NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D YPD4_2691 putative arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D YPD4_3038 anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D YPD4_1224 pflA; pyruvate formate-lyase 1 activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D YPD4_1204 hcr; NADH oxidoreductase Hcr K11933 hcr; NADH oxidoreductase Hcr [EC:1.-.-.-]
D YPD4_2942 pcm; protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D YPD4_1461 cfa; cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D YPD4_2194 tam; trans-aconitate 2-methyltransferase K00598 tam; trans-aconitate 2-methyltransferase [EC:2.1.1.144]
D YPD4_1716 putative tellurite resistance protein K16868 tehB; tellurite methyltransferase [EC:2.1.1.265]
D YPD4_0251 coproporphyrinogen III oxidase K21936 chuW; anaerobilin synthase [EC:2.1.1.342]
D YPD4_2404 cutE; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D YPD4_3058 putative acetyltransferase K03824 yhbS; putative acetyltransferase [EC:2.3.1.-]
D YPD4_3587 putative acetyltransferase K03826 yiaC; putative acetyltransferase [EC:2.3.1.-]
D YPD4_3027 putative acetyltransferase K03828 yjgM; putative acetyltransferase [EC:2.3.1.-]
D YPD4_3418 hypothetical protein K22757 QCT; glutaminyl-peptide cyclotransferase [EC:2.3.2.5]
D YPD4_1214 leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D YPD4_0532 hypothetical protein K21298 E2.4.1.333; 1,2-beta-oligoglucan phosphorylase [EC:2.4.1.333]
D YPD4_2163 hypothetical protein K20885 K20885; beta-1,2-mannobiose phosphorylase / 1,2-beta-oligomannan phosphorylase [EC:2.4.1.339 2.4.1.340]
D YPD4_2863 hypothetical protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D YPD4_0876 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D YPD4_2828 putative thiamine biosynthesis lipoprotein apbE K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D YPD4_1096 hypothetical protein K21948 otnK; 3-dehydrotetronate 4-kinase [EC:2.7.1.217]
D YPD4_1442 hypothetical protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D YPD4_0566 glnE; glutamate-ammonia-ligase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D YPD4_1439 hypothetical protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D YPD4_3278 aceK; bifunctional isocitrate dehydrogenase kinase/phosphatase protein K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-]
D YPD4_1943 hypothetical protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D YPD4_2541 sixA; putative phosphohistidine phosphatase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D YPD4_1128 rtn1; hypothetical protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D YPD4_3516 hypothetical protein K26149 K26149; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D YPD4_2670 sulfatase K01138 K01138; uncharacterized sulfatase [EC:3.1.6.-]
D YPD4_0828 putative sulfatase K01138 K01138; uncharacterized sulfatase [EC:3.1.6.-]
D YPD4_0840 putative sulfatase K01138 K01138; uncharacterized sulfatase [EC:3.1.6.-]
D YPD4_0751 endA; endonuclease I K01150 endA; deoxyribonuclease I [EC:3.1.21.1]
D YPD4_2123 deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D YPD4_0373 metalloenzyme K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D YPD4_3324 hypothetical protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D YPD4_2384 hypothetical protein K01175 ybfF; esterase [EC:3.1.-.-]
D YPD4_2821 hypothetical protein K11750 frsA; esterase FrsA [EC:3.1.-.-]
D YPD4_3517 Cellulase K20542 bcsZ; endoglucanase [EC:3.2.1.4]
D YPD4_1848 putative phage lysozyme K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D YPD4_0817 putative galactosidase K01224 E3.2.1.89; arabinogalactan endo-1,4-beta-galactosidase [EC:3.2.1.89]
D YPD4_2058 probable N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPD4_0208 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D YPD4_1401 hypothetical protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D YPD4_2346 hypothetical protein K03478 chbG; chitin disaccharide deacetylase [EC:3.5.1.105]
D YPD4_1575 hypothetical protein K09900 E3.5.1.135; N4-acetylcytidine amidohydrolase [EC:3.5.1.135]
D YPD4_3171 hypothetical protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D YPD4_0565 hypothetical protein K18446 ygiF; triphosphatase [EC:3.6.1.25]
D YPD4_2759 putative haloacid dehalogenase-like hydrolase K11938 cof; HMP-PP phosphatase [EC:3.6.1.-]
D YPD4_2660 hypothetical protein K12945 nudK; GDP-mannose pyrophosphatase NudK [EC:3.6.1.-]
D YPD4_2135 maf; Maf-like protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D YPD4_0005 hypothetical protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D YPD4_1097 hypothetical protein K22130 otnC; 3-dehydro-4-phosphotetronate decarboxylase [EC:4.1.1.104]
D YPD4_1960 putative fructose-6-phosphate aldolase K08313 fsaA; fructose-6-phosphate aldolase 1 [EC:4.1.2.-]
D YPD4_0319 hypothetical protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D YPD4_0844 hypothetical protein K08961 K08961; chondroitin-sulfate-ABC endolyase/exolyase [EC:4.2.2.20 4.2.2.21]
D YPD4_0893 hypothetical protein K01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-]
D YPD4_1647 hypothetical protein K17948 nanM; N-acetylneuraminate epimerase [EC:5.1.3.24]
D YPD4_0286 hypothetical protein K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32]
D YPD4_1099 hypothetical protein K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35]
D YPD4_3235 mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D YPD4_1969 integral membrane protein K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D YPD4_1971 electron transport complex protein RnfC K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D YPD4_1972 electron transport complex protein RnfB K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D YPD4_2834 nqrA; Na(+)-translocating NADH-quinone reductase subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1]
D YPD4_2833 nqrB; Na(+)-translocating NADH-quinone reductase subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1]
D YPD4_2832 nqrC; Na(+)-translocating NADH-quinone reductase subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1]
D YPD4_2831 nqrD; NADH-ubiquinone oxidoreductase K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1]
D YPD4_2830 nqrE; Na(+)-translocating NADH-quinone reductase subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D YPD4_1702 putative Na(+)-translocating NADH-quinone reductase subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D YPD4_2829 nqrF; Na(+)-translocating NADH-quinone reductase subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
D YPD4_3366 putative P-type cation-translocating membrane ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D YPD4_2078 mgtB; Mg(2+) transport ATPase protein B K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]
C 99981 Carbohydrate metabolism
D YPD4_2980 sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A
C 99982 Energy metabolism
D YPD4_3573 formate dehydrogenase K02379 fdhD; FdhD protein
D YPD4_2271 fdx; adrenodoxin family ferredoxin K04755 fdx; ferredoxin, 2Fe-2S
D YPD4_1968 electron transport complex protein RnfG K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D YPD4_1967 NADH-ubiquinone oxidoreductase K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D YPD4_1973 Na(+)-translocating NADH-quinone reductase subunit E K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D YPD4_0298 hydN; 4Fe-4S ferrodoxin K05796 hydN; electron transport protein HydN
D YPD4_0001 flavodoxin K06205 mioC; MioC protein
D YPD4_0787 fldB; flavodoxin K03840 fldB; flavodoxin II
D YPD4_2275 nifU; NifU family protein K04488 iscU; nitrogen fixation protein NifU and related proteins
D YPD4_3165 putative cytochrome K15536 cybC; soluble cytochrome b562
D YPD4_2910 cybC; cytochrome b(562) K15536 cybC; soluble cytochrome b562
D YPD4_2664 napF; ferredoxin-type protein NapF K02572 napF; ferredoxin-type protein NapF
D YPD4_2385 flavodoxin 1 K03839 fldA; flavodoxin I
D YPD4_2661 napC; cytochrome C-type protein NapC K02569 napC; cytochrome c-type protein NapC
C 99983 Lipid metabolism
D YPD4_0333 aidB; putative acyl-CoA dehydrogenase K09456 aidB; putative acyl-CoA dehydrogenase
C 99984 Nucleotide metabolism
D YPD4_2373 nrdI; nrdI protein K03647 nrdI; protein involved in ribonucleotide reduction
C 99985 Amino acid metabolism
D YPD4_2621 hypothetical protein K06203 cysZ; CysZ protein
D YPD4_0928 hypothetical protein K08234 yaeR; glyoxylase I family protein
D YPD4_2049 hypothetical protein K14054 mpaA; murein peptide amidase A
D YPD4_0743 hypothetical protein K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D YPD4_1955 hypothetical protein K08992 lapA; lipopolysaccharide assembly protein A
D YPD4_1956 hypothetical protein K19804 lapB; lipopolysaccharide assembly protein B
D YPD4_1225 hypothetical protein K07270 K07270; glycosyl transferase, family 25
C 99987 Cofactor metabolism
D YPD4_3398 hemY; putative protoheme IX biogenesis protein K02498 hemY; HemY protein
D YPD4_3327 aarF; putative ubiquinone biosynthesis protein UbiB K03688 ubiB; ubiquinone biosynthesis protein
D YPD4_3328 hypothetical protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D YPD4_3059 hypothetical protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT
D YPD4_0012 mobB; molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
D YPD4_0686 putative integral membrane efflux protein K12942 abgT; aminobenzoyl-glutamate transport protein
C 99988 Secondary metabolism
D YPD4_0584 sufI; putative cell division protein K04753 sufI; suppressor of ftsI
C 99999 Others
D YPD4_0498 membrane protein K15977 K15977; putative oxidoreductase
D YPD4_2864 putative acetyltransferase K09181 yfiQ; acetyltransferase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D YPD4_3290 rsd; regulator of sigma D K07740 rsd; regulator of sigma D
D YPD4_2754 glnK; nitrogen regulatory protein P-II K04752 glnK; nitrogen regulatory protein P-II 2
D YPD4_0115 hypothetical protein K06959 tex; protein Tex
C 99974 Translation
C 99975 Protein processing
D YPD4_2039 hslJ; putative heat shock protein K03668 hslJ; heat shock protein HslJ
D YPD4_1211 clpS; ATP-dependent Clp protease adaptor protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D YPD4_2769 Trigger factor K03545 tig; trigger factor
D YPD4_3134 hypothetical protein K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D YPD4_3568 fdhE; formate dehydrogenase accessory protein FdhE K02380 fdhE; FdhE protein
D YPD4_2360 ureE; urease accessory protein K03187 ureE; urease accessory protein
D YPD4_2359 ureF; urease accessory protein K03188 ureF; urease accessory protein
D YPD4_2358 ureG; urease accessory protein K03189 ureG; urease accessory protein
D YPD4_2357 hypothetical protein K03190 ureD; urease accessory protein
D YPD4_0958 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D YPD4_3436 putative magnesium chelatase family protein K07391 comM; magnesium chelatase family protein
D YPD4_0549 hypothetical protein K07396 K07396; putative protein-disulfide isomerase
D YPD4_0862 hypothetical protein K07396 K07396; putative protein-disulfide isomerase
D YPD4_0154 hypothetical protein K07397 yhfA; putative redox protein
D YPD4_0111 hypothetical protein K07400 nfuA; Fe/S biogenesis protein NfuA
C 99976 Replication and repair
D YPD4_2750 6-O-methylguanine DNA methyltransferase family protein K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D YPD4_0897 xni; exonuclease IX K01146 xni; protein Xni
D YPD4_0047 radC; DNA repair protein RadC K03630 radC; DNA repair protein RadC
D YPD4_3330 alpha helix chain K09760 rmuC; DNA recombination protein RmuC
D YPD4_1207 hypothetical protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D YPD4_3207 hypothetical protein K07460 yraN; putative endonuclease
D YPD4_0209 hypothetical protein K04096 smf; DNA processing protein
D YPD4_0554 hypothetical protein K07474 xtmA; phage terminase small subunit
D YPD4_1221 rarA; replication/recombination-associated protein RarA K07478 ycaJ; putative ATPase
D YPD4_0211 putative DNA-binding protein K07479 yrdD; putative DNA topoisomerase
D YPD4_0796 putative primase K06919 K06919; putative DNA primase/helicase
D YPD4_0723 insB; insertion sequence protein K07480 insB; insertion element IS1 protein InsB
D YPD4_3071 insertion element DNA-binding protein K07483 K07483; transposase
D YPD4_0656 insertion element DNA-binding protein K07483 K07483; transposase
D YPD4_0697 insertion element DNA-binding protein K07483 K07483; transposase
D YPD4_3462 insertion element DNA-binding protein K07483 K07483; transposase
D YPD4_3257 insertion element DNA-binding protein K07483 K07483; transposase
D YPD4_0103 IS1661 DNA-binding protein K07483 K07483; transposase
D YPD4_pCD0008 hypothetical protein K07483 K07483; transposase
D YPD4_pCD0056 hypothetical protein K07483 K07483; transposase
D YPD4_3560 transposase K07483 K07483; transposase
D YPD4_3602 transposase K07483 K07483; transposase
D YPD4_pMT0062 transposase K07486 K07486; transposase
D YPD4_1589 tnp; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPD4_2883 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_2890 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_0178 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_3119 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_3000 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_3015 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_3190 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_0417 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_0425 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_0607 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_0633 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_0901 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_0957 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_1042 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_2024 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_2121 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_2128 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_2136 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_2212 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_3296 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_3357 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_0017 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_2786 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_2874 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_0086 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_1213 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_1456 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_1491 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_1501 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_0473 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_0511 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_2251 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_2391 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_1792 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_1869 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_2616 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_2625 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_2683 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_2693 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_0606 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_0758 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_0841 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_3219 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_3313 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_3490 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_3399 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_1013 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_1022 tnp; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPD4_1088 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_1119 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_1247 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_1266 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_1274 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_1352 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_2281 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_2297 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_2306 transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_pMT0034 putative transposase K07491 rayT; REP-associated tyrosine transposase
D YPD4_0011 y1062; transposase for the IS285 insertion element K07493 K07493; putative transposase
D YPD4_1327 transposase K07493 K07493; putative transposase
D YPD4_1390 transposase for the IS285 insertion element K07493 K07493; putative transposase
D YPD4_1411 transposase K07493 K07493; putative transposase
D YPD4_1537 transposase K07493 K07493; putative transposase
D YPD4_1752 transposase for the IS285 insertion element K07493 K07493; putative transposase
D YPD4_1854 transposase K07493 K07493; putative transposase
D YPD4_1878 transposase K07493 K07493; putative transposase
D YPD4_1908 transposase K07493 K07493; putative transposase
D YPD4_1929 transposase K07493 K07493; putative transposase
D YPD4_2110 transposase K07493 K07493; putative transposase
D YPD4_2139 transposase for the IS285 insertion element K07493 K07493; putative transposase
D YPD4_2141 transposase K07493 K07493; putative transposase
D YPD4_2246 transposase for the IS285 insertion element K07493 K07493; putative transposase
D YPD4_2444 transposase K07493 K07493; putative transposase
D YPD4_2498 transposase K07493 K07493; putative transposase
D YPD4_2507 transposase K07493 K07493; putative transposase
D YPD4_2576 transposase K07493 K07493; putative transposase
D YPD4_3419 transposase for the IS285 insertion element K07493 K07493; putative transposase
D YPD4_pMT0061 transposase, IS256 family K07493 K07493; putative transposase
D YPD4_1038 transposase for the IS285 insertion element K07493 K07493; putative transposase
D YPD4_1039 transposase K07493 K07493; putative transposase
D YPD4_1659 hypothetical protein K07493 K07493; putative transposase
D YPD4_0696 IS1661 transposase K07497 K07497; putative transposase
D YPD4_3070 IS1661 transposase K07497 K07497; putative transposase
D YPD4_3258 IS1661 transposase K07497 K07497; putative transposase
D YPD4_3463 IS1661 transposase K07497 K07497; putative transposase
D YPD4_3561 IS1661 transposase K07497 K07497; putative transposase
D YPD4_3603 IS1661 transposase K07497 K07497; putative transposase
D YPD4_pCD0055 hypothetical protein K07497 K07497; putative transposase
D YPD4_pCD0007 hypothetical protein K07497 K07497; putative transposase
D YPD4_pCD0001 integrase core domain protein K07497 K07497; putative transposase
D YPD4_pCD0064 putative transposase K07497 K07497; putative transposase
D YPD4_pCD0050 hypothetical protein K07497 K07497; putative transposase
D YPD4_0102 IS1661 transposase K07497 K07497; putative transposase
D YPD4_1655 transposase K07497 K07497; putative transposase
D YPD4_0657 transposase for insertion sequence IS1661 K07497 K07497; putative transposase
D YPD4_1773 integrase core domain protein K07497 K07497; putative transposase
D YPD4_pCD0048 transposase K07497 K07497; putative transposase
D YPD4_pCD0059 putative transposase K07497 K07497; putative transposase
D YPD4_1841 transposase K14059 int; integrase
C 99979 Viral proteins
C 99998 Others
D YPD4_1493 pspA; phage shock protein A K03969 pspA; phage shock protein A
D YPD4_2738 hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D YPD4_3400 putative permease protein K03293 TC.AAT; amino acid transporter, AAT family
D YPD4_2180 putative BCCT-family transporter K03451 TC.BCT; betaine/carnitine transporter, BCCT family
D YPD4_1484 proton dependent peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D YPD4_2631 putative permease K03307 TC.SSS; solute:Na+ symporter, SSS family
D YPD4_2806 brnQ; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D YPD4_0948 putative permease K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
D YPD4_0374 putative Na+ dependent nucleoside transporter-family protein K03317 TC.CNT; concentrative nucleoside transporter, CNT family
D YPD4_0075 putative membrane transport protein K03319 TC.DASS; divalent anion:Na+ symporter, DASS family
D YPD4_1176 TrkA, Potassium channel-family protein K07085 K07085; putative transport protein
D YPD4_3594 hypothetical protein K07085 K07085; putative transport protein
C 99978 Cell growth
D YPD4_1931 ispZ; putative intracellular septation protein K06190 ispZ; intracellular septation protein
D YPD4_3369 putative lipoprotein K27311 dcrB; inner membrane lipoprotein DcrB
D YPD4_3223 hypothetical protein K07322 ytfE; regulator of cell morphogenesis and NO signaling
D YPD4_1886 hypothetical protein K06415 spoVR; stage V sporulation protein R
D YPD4_0059 hypothetical protein K22719 envC; murein hydrolase activator
C 99993 Cell motility
D YPD4_2117 putative lipoprotein K07337 K07337; penicillin-binding protein activator
D YPD4_1277 hypothetical protein K07343 tfoX; DNA transformation protein and related proteins
D YPD4_1517 fimbrial assembly chaperone protein K15540 ecpD; chaperone protein EcpD
D YPD4_2578 pili chaperone protein K15540 ecpD; chaperone protein EcpD
D YPD4_0900 syd; SecY interacting protein Syd K15723 syd; SecY interacting protein Syd
C 99995 Signaling proteins
D YPD4_3006 ampE; putative membrane-bound sensory transducer in beta-lactamase regulation K03807 ampE; AmpE protein
D YPD4_0260 tellurite resistance protein K05792 terA; tellurite resistance protein TerA
D YPD4_0261 terA; putative tellurite resistance protein K05792 terA; tellurite resistance protein TerA
D YPD4_0264 terD; tellurium resistance protein K05795 terD; tellurium resistance protein TerD
D YPD4_0265 terE; tellurium resistance protein K05795 terD; tellurium resistance protein TerD
D YPD4_0259 terZ; tellurium resistance protein K05791 terZ; tellurium resistance protein TerZ
D YPD4_1513 putative solute/DNA competence effector K03607 proQ; ProP effector
D YPD4_3492 uspA; universal stress protein A K06149 uspA; universal stress protein A
D YPD4_2015 putative stress protein K14055 uspE; universal stress protein E
D YPD4_1962 cstA; carbon starvation protein K06200 cstA; carbon starvation protein
D YPD4_3332 carbon starvation protein K06200 cstA; carbon starvation protein
D YPD4_0024 bipA; putative GTPase K06207 typA; GTP-binding protein
D YPD4_1723 phoH; putative phosphate starvation-inducible protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D YPD4_2401 hypothetical protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D YPD4_1893 hypothetical protein K07180 prkA; serine protein kinase
D YPD4_0564 hypothetical protein K07184 ygiM; SH3 domain protein
D YPD4_0380 smp; hypothetical protein K07186 smp; membrane protein
D YPD4_2780 hypothetical protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D YPD4_1220 lolA; outer-membrane lipoprotein carrier protein precursor K03634 lolA; outer membrane lipoprotein carrier protein
D YPD4_1778 lolB; outer membrane lipoprotein LolB precursor K02494 lolB; outer membrane lipoprotein LolB
D YPD4_2545 vacJ; VacJ lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D YPD4_3411 chain length determinant family protein K05790 wzzE; lipopolysaccharide biosynthesis protein WzzE
D YPD4_1476 slyB; putative lipoprotein K06077 slyB; outer membrane lipoprotein SlyB
D YPD4_3120 outer membrane lipoprotein K06077 slyB; outer membrane lipoprotein SlyB
D YPD4_0920 ompH; cationic 19 kDa outer membrane protein precursor K06142 hlpA; outer membrane protein
D YPD4_2941 nlpD; lipoprotein nlpD K06194 nlpD; lipoprotein NlpD
D YPD4_3068 nlpI; lipoprotein NlpI K05803 nlpI; lipoprotein NlpI
D YPD4_1935 ompW; hypothetical protein K07275 ompW; outer membrane protein
D YPD4_2882 hypothetical protein K07283 ydiY; putative salt-induced outer membrane protein
D YPD4_1833 outer membrane protein K07285 slp; outer membrane lipoprotein
D YPD4_2771 putative lipoprotein K07286 yajG; uncharacterized lipoprotein
D YPD4_1357 hypothetical protein K07289 asmA; AsmA protein
D YPD4_3508 hypothetical protein K07290 yhjG; AsmA family protein
D YPD4_2706 hypothetical protein K07340 ybbJ; inner membrane protein
D YPD4_1332 hypothetical protein K02005 ABC.CD.TX; HlyD family secretion protein
D YPD4_2144 hypothetical protein K11744 tqsA; AI-2 transport protein TqsA
D YPD4_0786 inner membrane protein CreD K06143 creD; inner membrane protein
D YPD4_2550 ccmE; putative cytochrome c-type biogenesis protein K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D YPD4_2547 ccmH; putative cytochrome c-type biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D YPD4_2261 DNA-binding protein K15539 rodZ; cytoskeleton protein RodZ
D YPD4_0518 hypothetical protein K21908 hdeD; membrane protein HdeD
C 99994 Others
D YPD4_3620 phoU; negative regulator for pho regulon K02039 phoU; phosphate transport system protein
D YPD4_0262 terB; tellurite resistance protein K05793 terB; tellurite resistance protein TerB
D YPD4_0263 terC; tellurium resistance protein K05794 terC; tellurite resistance protein TerC
D YPD4_1808 cutC; putative copper homeostasis protein K06201 cutC; copper homeostasis protein
D YPD4_3044 phnK; phosphonates transport ATP-binding protein K05781 phnK; putative phosphonate transport system ATP-binding protein
D YPD4_0428 apaG; hypothetical protein K06195 apaG; ApaG protein
D YPD4_3393 cyaY; frataxin-like protein K06202 cyaY; iron-sulfur cluster assembly protein CyaY
D YPD4_0246 hmuS; hemin transport protein K07225 hmuS; putative hemin transport protein
D YPD4_0250 hypothetical protein K07227 chuX; heme iron utilization protein
D YPD4_2743 hypothetical protein K06039 ychN; uncharacterized protein involved in oxidation of intracellular sulfur
B
B 09194 Poorly characterized
C 99996 General function prediction only
D YPD4_2519 cvpA; putative colicin V production protein K03558 cvpA; membrane protein required for colicin V production
D YPD4_1264 pqiB; paraquat-inducible protein B K06192 pqiB; paraquat-inducible protein B
D YPD4_1801 putative oxidoreductase K03810 mviM; virulence factor
D YPD4_2866 putative lipoprotein K05811 yfiM; putative lipoprotein
D YPD4_0371 osmY; osmotically inducible protein Y K04065 osmY; hyperosmotically inducible periplasmic protein
D YPD4_1796 hypothetical protein K04477 ycdX; putative hydrolase
D YPD4_2326 hypothetical protein K06866 grcA; autonomous glycyl radical cofactor
D YPD4_2971 hypothetical protein K15724 erpA; iron-sulfur cluster insertion protein
D YPD4_1447 sufA; iron-sulfur cluster assembly scaffold protein K05997 sufA; Fe-S cluster assembly protein SufA
D YPD4_1448 hypothetical protein K09014 sufB; Fe-S cluster assembly protein SufB
D YPD4_1450 hypothetical protein K09015 sufD; Fe-S cluster assembly protein SufD
D YPD4_1527 hypothetical protein K07038 K07038; inner membrane protein
D YPD4_2668 hypothetical protein K07038 K07038; inner membrane protein
D YPD4_3506 hypothetical protein K07058 K07058; membrane protein
D YPD4_0026 rbn; ribonuclease BN K07058 K07058; membrane protein
D YPD4_0303 membrane protein K07113 fxsA; UPF0716 protein FxsA
D YPD4_0892 Fe-S metabolism associated protein K02426 sufE; cysteine desulfuration protein SufE
D YPD4_1452 cysteine desufuration protein SufE K02426 sufE; cysteine desulfuration protein SufE
D YPD4_2145 rhodanese domain protein K07146 K07146; UPF0176 protein
D YPD4_2096 hypothetical protein K07153 hflD; high frequency lysogenization protein
D YPD4_1359 putative ferric iron reductase K13255 fhuF; ferric iron reductase protein FhuF
D YPD4_2556 lemA; hypothetical protein K03744 lemA; LemA protein
D YPD4_0210 smg; hypothetical protein K03747 smg; Smg protein
D YPD4_0396 hypothetical protein K05805 creA; CreA protein
D YPD4_0752 sprT; hypothetical protein K02742 sprT; SprT protein
D YPD4_2520 dedD; hypothetical protein K03749 dedD; DedD protein
D YPD4_0134 hypothetical protein K03112 damX; DamX protein
D YPD4_1343 hypothetical protein K03748 sanA; SanA protein
D YPD4_2523 dedA; hypothetical protein K03975 dedA; membrane-associated protein
D YPD4_1511 membrane protein K03808 pqiA; paraquat-inducible protein A
D YPD4_1263 pqiA; putative paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A
D YPD4_2479 elaB; hypothetical protein K05594 elaB; ElaB protein
D YPD4_1497 hypothetical protein K08990 ycjF; putative membrane protein
D YPD4_2441 hypothetical protein K08996 yagU; putative membrane protein
D YPD4_1910 hypothetical protein K09858 K09858; SEC-C motif domain protein
D YPD4_2751 putative lipoprotein K09914 K09914; putative lipoprotein
D YPD4_3263 maltose operon periplasmic protein K05775 malM; maltose operon periplasmic protein
D YPD4_3269 phosphate-starvation-inducible protein PsiE K13256 psiE; protein PsiE
D YPD4_2558 hypothetical protein K06193 phnA; protein PhnA
C 99997 Function unknown
D YPD4_0692 enterotoxin-like protein K06867 K06867; uncharacterized protein
D YPD4_2925 hypothetical protein K06867 K06867; uncharacterized protein
D YPD4_2324 yplB; putative phospholipase A accessory protein K06867 K06867; uncharacterized protein
D YPD4_2669 putative sulfatase modifier protein K06871 K06871; uncharacterized protein
D YPD4_0829 putative regulatory protein K06871 K06871; uncharacterized protein
D YPD4_1330 putative heme-binding protein K06871 K06871; uncharacterized protein
D YPD4_1654 hypothetical protein K06887 K06887; uncharacterized protein
D YPD4_2250 hypothetical protein K06887 K06887; uncharacterized protein
D YPD4_2502 hypothetical protein K06887 K06887; uncharacterized protein
D YPD4_1115 hypothetical protein K06887 K06887; uncharacterized protein
D YPD4_1766 hypothetical protein K06889 K06889; uncharacterized protein
D YPD4_3216 hypothetical protein K06889 K06889; uncharacterized protein
D YPD4_1012 hypothetical protein K06890 K06890; uncharacterized protein
D YPD4_1495 hypothetical protein K06918 K06918; uncharacterized protein
D YPD4_pMT0071 putative DNA-binding protein K06921 K06921; uncharacterized protein
D YPD4_1283 hypothetical protein K06929 K06929; uncharacterized protein
D YPD4_1526 transport protein K06956 K06956; uncharacterized protein
D YPD4_0578 hypothetical protein K07000 K07000; uncharacterized protein
D YPD4_2114 hypothetical protein K07000 K07000; uncharacterized protein
D YPD4_1117 hypothetical protein K07014 K07014; uncharacterized protein
D YPD4_0157 hypothetical protein K07019 K07019; uncharacterized protein
D YPD4_0407 hypothetical protein K07034 K07034; uncharacterized protein
D YPD4_2681 hypothetical protein K07054 K07054; uncharacterized protein
D YPD4_2512 hypothetical protein K07071 K07071; uncharacterized protein
D YPD4_2536 hypothetical protein K07090 K07090; uncharacterized protein
D YPD4_2510 phosphodiesterase K07095 K07095; uncharacterized protein
D YPD4_3227 hypothetical protein K07109 K07109; uncharacterized protein
D YPD4_0239 putative integral membrane protein K07112 K07112; uncharacterized protein
D YPD4_3208 glycosylase K07121 K07121; uncharacterized protein
D YPD4_1753 hypothetical protein K07126 K07126; uncharacterized protein
D YPD4_pMT0025 hypothetical protein K07128 K07128; uncharacterized protein
D YPD4_pMT0026 putative ABC transporter ATP-binding protein K07128 K07128; uncharacterized protein
D YPD4_1811 hypothetical protein K07136 K07136; uncharacterized protein
D YPD4_3201 hypothetical protein K07139 K07139; uncharacterized protein
D YPD4_1260 putative iron-sulfur binding protein K07140 K07140; MOSC domain-containing protein
D YPD4_1339 hypothetical protein K07148 K07148; uncharacterized protein
D YPD4_0740 hypothetical protein K09131 K09131; uncharacterized protein
D YPD4_1840 hypothetical protein K09160 K09160; uncharacterized protein
D YPD4_2450 hypothetical protein K09161 K09161; uncharacterized protein
D YPD4_2658 hypothetical protein K09768 K09768; uncharacterized protein
D YPD4_1892 hypothetical protein K09786 K09786; uncharacterized protein
D YPD4_0058 hypothetical protein K09798 K09798; uncharacterized protein
D YPD4_0057 hypothetical protein K09798 K09798; uncharacterized protein
D YPD4_0764 hypothetical protein K09807 K09807; uncharacterized protein
D YPD4_1208 putative virulence factor K09824 virK; uncharacterized protein
D YPD4_1265 putative lipoprotein protein K09857 K09857; uncharacterized protein
D YPD4_0402 hypothetical protein K09861 K09861; uncharacterized protein
D YPD4_3285 hypothetical protein K09891 K09891; uncharacterized protein
D YPD4_0019 hypothetical protein K09894 K09894; uncharacterized protein
D YPD4_0770 hypothetical protein K09895 K09895; uncharacterized protein
D YPD4_3437 hypothetical protein K09897 K09897; uncharacterized protein
D YPD4_2449 hypothetical protein K09899 K09899; uncharacterized protein
D YPD4_1925 hypothetical protein K09901 K09901; uncharacterized protein
D YPD4_1807 hypothetical protein K09907 K09907; uncharacterized protein
D YPD4_3192 hypothetical protein K09908 K09908; uncharacterized protein
D YPD4_1282 hypothetical protein K09909 K09909; uncharacterized protein
D YPD4_2998 hypothetical protein K09910 K09910; uncharacterized protein
D YPD4_1273 hypothetical protein K09911 K09911; uncharacterized protein
D YPD4_1403 nucleoprotein/polynucleotide-associated enzyme K09912 K09912; uncharacterized protein
D YPD4_1574 hypothetical protein K09918 K09918; uncharacterized protein
D YPD4_0576 hypothetical protein K09920 K09920; uncharacterized protein
D YPD4_3391 hypothetical protein K09921 K09921; uncharacterized protein
D YPD4_0734 hypothetical protein K09923 K09923; uncharacterized protein
D YPD4_2239 hypothetical protein K09946 K09946; uncharacterized protein
D YPD4_2617 hypothetical protein K09962 K09962; uncharacterized protein
D YPD4_2709 hypothetical protein K09973 K09973; uncharacterized protein
D YPD4_1739 hypothetical protein K09975 K09975; uncharacterized protein
D YPD4_2036 hypothetical protein K09978 K09978; uncharacterized protein
D YPD4_3050 hypothetical protein K09979 K09979; uncharacterized protein
D YPD4_pCD0039 yscD; virulence protein K09983 K09983; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: April 26, 2024