+D GENES KO #

  KEGG Orthology (KO) - Yersinia pestis KIM10+ (biovar Mediaevalis)

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:ypk00010] D y1505 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D y0024 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D y0059 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D y0664 fbp; fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D y0048 glpX; hypothetical K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D y3869 biphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D y3307 fba; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D y0052 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D y2165 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D y3308 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D y3048 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D y3724 gpmB; phosphoglyceromutase 2 K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D y0077 putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D y0814 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D y1944 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40] D y2246 pykA; pyruvate kinase II, glucose stimulated K00873 PK; pyruvate kinase [EC:2.7.1.40] D y1930 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D y0767 aceE; pyruvate dehydrogenase (decarboxylase component) K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D y0768 aceF; pyruvate dehydrogenase (dihydrolipoyltransacetylase component) K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D y0769 lpdA; lipoamide dehydrogenase (NADH); component of 2-oxodehydrogenase and pyruvate complexes; L-protein of glycine cleavage complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D y0318 putative pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D y1999 putative oxidoreductase, Fe-S subunit K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D y2667 adhC; alcohol dehydrogenase class III; formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D y2023 adhE; CoA-linked acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D y0510 acs; acetyl CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D y3802 putative phosphatase K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10] D y1258 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D y2166 hypothetical protein K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15] D y3918 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D y3950 celF; phospho-beta-glucosidase K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86] D y2932 bglA; 6-phospho-beta-glucosidase A K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D y1485 crr; PTS system, glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D y1767 ptsG; PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] C 00020 Citrate cycle (TCA cycle) [PATH:ypk00020] D y3072 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D y2063 acnA; aconitate hydrase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3] D y0771 acnB; aconitate hydrase B K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D y1802 icdA; isocitrate dehydrogenase, specific for NADP+ K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D y3067 sucA; 2-oxoglutarate dehydrogenase (decarboxylase component) K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D y3066 sucB; 2-oxoglutarate dehydrogenase (dihydrolipoyltranssuccinase E2 component) K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D y0769 lpdA; lipoamide dehydrogenase (NADH); component of 2-oxodehydrogenase and pyruvate complexes; L-protein of glycine cleavage complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D y0318 putative pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D y3064 sucD; succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D y3065 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D y3069 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D y3068 sdhB; succinate dehydrogenase, iron sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D y3071 sdhC; succinate dehydrogenase, cytochrome b556 K00241 sdhC; succinate dehydrogenase cytochrome b subunit D y3070 sdhD; succinate dehydrogenase, hydrophobic subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit D y0617 frdA; fumarate reductase, anaerobic, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D y0616 frdB; fumarate reductase, anaerobic, iron-sulfur protein subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D y0615 frdC; fumarate reductase, anaerobic, membrane anchor polypeptide K00246 frdC; succinate dehydrogenase subunit C D y0614 frdD; fumarate reductase, anaerobic, membrane anchor polypeptide K00247 frdD; succinate dehydrogenase subunit D D y0854 fumA; fumarase A K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D y2106 fumC; fumarase C K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D y0668 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D y3918 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D y0767 aceE; pyruvate dehydrogenase (decarboxylase component) K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D y0768 aceF; pyruvate dehydrogenase (dihydrolipoyltransacetylase component) K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D y1999 putative oxidoreductase, Fe-S subunit K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00030 Pentose phosphate pathway [PATH:ypk00030] D y0024 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D y2244 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D y3033 putative isomerase K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31] D y2629 gnd; gluconate-6-phosphate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D y3938 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D y3310 tktA; transketolase 1 isozyme K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D y3712 talB; transaldolase B K00616 TALDO1; transaldolase [EC:2.2.1.2] D y3302 rpiA; ribosephosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D y2892 putative ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D y0837 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D y3743 deoC; 2-deoxyribose-5-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D y2860 deoC; putative deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D y0247 putative deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D y0008 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D y0248 putative ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D y3741 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D y1258 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D y0721 phnN; ATP-binding protein K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23] D y2295 prsA; phosphoribosylpyrophosphate synthetase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D y1654 edd; 6-phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12] D y2243 eda; 2-keto-3-deoxygluconate 6-phosphate aldolase/2-keto-4-hydroxyglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D y4096 putative dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D y3876 gntV; gluconokinase 1 K00851 idnK; gluconokinase [EC:2.7.1.12] D y1646 gntV; gluconokinase 1 K00851 idnK; gluconokinase [EC:2.7.1.12] D y3838 kdgK; ketodeoxygluconokinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D y3869 biphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D y3307 fba; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D y0664 fbp; fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D y0048 glpX; hypothetical K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D y0059 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C 00040 Pentose and glucuronate interconversions [PATH:ypk00040] D y3757 putative pectinesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] D y3834 pectate lyase K01728 pel; pectate lyase [EC:4.2.2.2] D y1885 putative pectate lyase K01731 pelW; pectate disaccharide-lyase [EC:4.2.2.9] D y1875 ogl; putative oligogalacturonide lyase K01730 ogl; oligogalacturonide lyase [EC:4.2.2.6] D y1888 kdgF; putative pectin degradation protein K26933 kdgF; unsaturated pyranuronate lyase [EC:4.2.99.25] D y1887 kduI; 5-keto-4-deoxyuronate isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17] D y1886 kduD; 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127] D y3224 kduD; 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127] D y3600 uxaC; uronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12] D y3599 uxaB; altronate oxidoreductase K00041 uxaB; tagaturonate reductase [EC:1.1.1.58] D y3598 uxaA; altronate hydrolase K01685 uxaA; altronate hydrolase [EC:4.2.1.7] D y2902 uxuA; mannonate hydrolase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8] D y2903 putative oxidoreductase K00040 uxuB; fructuronate reductase [EC:1.1.1.57] D y2147 putative UDP-glucose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D y2630 galF; probably a UDP-gal transferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D y2631 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D y0855 lyxK; L-xylulose kinase, cryptic K00880 lyxK; L-xylulokinase [EC:2.7.1.53] D y0856 sgbU; probable 3-hexulose-6-phosphate isomerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22] D y0863 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D y2072 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D y3938 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D y2094 araA; L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4] D y2095 araB; L-ribulokinase K00853 araB; L-ribulokinase [EC:2.7.1.16] D y4058 xylB; xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17] D y2893 putative xylulose kinase K00854 xylB; xylulokinase [EC:2.7.1.17] D y4057 xylA; D-xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] D y0587 rhaB; rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5] D y0585 rhaD; rhamnulose-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19] D y2008 putative D-arabinitol dehydrogenase K00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11] D y3868 conserved hypothetical protein K09988 lyxA; D-lyxose ketol-isomerase [EC:5.3.1.15] D y0231 putative sugar kinase K00875 rbtK; D-ribulokinase [EC:2.7.1.47] C 00051 Fructose and mannose metabolism [PATH:ypk00051] D y0975 possible NAGC-like transcriptional regulator K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D y2105 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D y1083 cpsG; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D y1710 cpsG; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D y1081 cpsB; mannose-1-phosphate guanyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D y1080 wcaG; putative nucleotide di-P-sugar epimerase or dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D y2598 hypothetical K18334 fucD; L-fuconate dehydratase [EC:4.2.1.68] D y2600 ucpA; putative oxidoreductase K18335 E1.1.1.434; 2-dehydro-3-deoxy-L-fuconate 4-dehydrogenase [EC:1.1.1.434] D y0586 rhaA; L-rhamnose isomerase K01813 rhaA; L-rhamnose isomerase [EC:5.3.1.14] D y0587 rhaB; rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5] D y0585 rhaD; rhamnulose-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19] D y0059 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D y0664 fbp; fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D y0048 glpX; hypothetical K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D y4086 mtlD; mannitol-1-phosphate dehydrogenase K00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17] D y2886 fruK; fructose-1-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D y4057 xylA; D-xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] D y2008 putative D-arabinitol dehydrogenase K00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11] D y3869 biphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D y3307 fba; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D y0052 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D y0837 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D y2885 fruA; PTS system, fructose-specific IIBC transport protein K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D y2551 manX; PTS enzyme IIAB, mannose-specific K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D y2552 manY; PTS enzyme IIC, mannose-specific K02795 manY; mannose PTS system EIIC component D y2553 manZ; PTS enzyme IID, mannose-specific K02796 manZ; mannose PTS system EIID component D y4087 mtlA; PTS system mannitol-specific enzyme IIABC components K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D y1625 putative phosphatase K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50] D y1890 putative phosphatase K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68] C 00052 Galactose metabolism [PATH:ypk00052] D y3045 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D y3044 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D y3043 galE; UDP-galactose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D y2630 galF; probably a UDP-gal transferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D y2631 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D y1258 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D y1505 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D y1817 lacZ; beta-D-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D y3237 possible beta-d-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23] D y2582 putative alpha-D-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D y0059 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D y3229 agaY; tagatose-bisphosphate aldolase 2 K08302 gatY-kbaY; tagatose 1,6-diphosphate aldolase GatY/KbaY [EC:4.1.2.40] D y3217 agaZ; putative tagatose 6-phosphate kinase 2 K16371 gatZ-kbaZ; D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ D y3233 hypothetical K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D y0983 malZ; maltodextrin glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D y3222 hypothetical K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D y3219 agaV; PTS family enzyme IIB component 2 (EIIB-AGA) K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-] D y3220 putative permease protein K02746 agaW; N-acetylgalactosamine PTS system EIIC component D y3221 putative PTS permease protein K02747 agaE; N-acetylgalactosamine PTS system EIID component D y3223 putative deacetylase K02079 agaA; N-acetylgalactosamine-6-phosphate deacetylase [EC:3.5.1.25] D y3218 agaS; putative tagatose-6-phosphate aldose/ketose isomerase K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-] C 00053 Ascorbate and aldarate metabolism [PATH:ypk00053] D y2147 putative UDP-glucose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D y1618 putative phosphotransferase system IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D y1617 hypothetical K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D y1615 conserved hypothetical protein K03475 ulaA; ascorbate PTS system EIIC component D y0856 sgbU; probable 3-hexulose-6-phosphate isomerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22] D y0863 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D y2072 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D y0855 lyxK; L-xylulose kinase, cryptic K00880 lyxK; L-xylulokinase [EC:2.7.1.53] C 00500 Starch and sucrose metabolism [PATH:ypk00500] D y3233 hypothetical K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D y0983 malZ; maltodextrin glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D y2630 galF; probably a UDP-gal transferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D y2631 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D y3562 glycosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D y1128 putative beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D y1253 celC; PEP-dependent phosphotransferase IIA component for cellobiose, arbutin, and salicin K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D y1251 celA; PEP-dependent phosphotransferase enzyme IV for cellobiose, arbutin, and salicin K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D y1252 celB; PEP-dependent phosphotransferase enzyme II for cellobiose, arbutin, and salicin K02761 celB; cellobiose PTS system EIIC component D y3950 celF; phospho-beta-glucosidase K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86] D y2932 bglA; 6-phospho-beta-glucosidase A K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D y1068 putative glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D y3888 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D y3889 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] D y3886 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D y3890 glgP; glycogen phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D y3887 glgX; glycosyl hydrolase, debranching enzyme K02438 glgX; glycogen debranching enzyme [EC:3.2.1.196] D y4097 malS; alpha-amylase K01176 AMY; alpha-amylase [EC:3.2.1.1] D y3902 malQ; 4-alpha-glucanotransferase (amylomaltase) K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D y1485 crr; PTS system, glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D y0166 treB; PTS system enzyme IIBC K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201] D y0167 treC; trehalase 6-P hydrolase K01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93] D y1258 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D y1505 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D y0024 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D y0975 possible NAGC-like transcriptional regulator K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:ypk00520] D y1775 hypothetical protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D y1485 crr; PTS system, glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D y1203 nagE; PTS system, N-acetylglucosamine-specific enzyme IIABC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D y1788 putative NAGC-like transcriptional regulator K00884 NAGK; N-acetylglucosamine kinase [EC:2.7.1.59] D y1201 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D y1202 nagB; glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D y0975 possible NAGC-like transcriptional regulator K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D y4132 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D y0684 mrsA; mrsA protein K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D y4133 glmU; N-acetyl glucosamine-1-phosphate uridyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D y1305 putative regulator K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126] D y1963 hypothetical protein K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D y0140 murA; UDP-N-glucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D y0471 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D y1461 putative NAGC-like transcriptional regulator K00885 nanK; N-acylmannosamine kinase [EC:2.7.1.60] D y1459 putative enzyme K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9] D y1458 putative acetylneuraminate lyase K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3] D y0364 wecB; UDP-N-acetyl glucosamine -2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D y0365 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] D y1919 putative transformylase K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305] D y1917 putative enzyme K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87] D y1918 putative sugar transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53] D y1920 hypothetical protein K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-] D y1767 ptsG; PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D y1505 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D y1258 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D y2630 galF; probably a UDP-gal transferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D y2631 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D y2147 putative UDP-glucose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D y3045 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D y3044 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D y3043 galE; UDP-galactose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D y2551 manX; PTS enzyme IIAB, mannose-specific K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D y2552 manY; PTS enzyme IIC, mannose-specific K02795 manY; mannose PTS system EIIC component D y2553 manZ; PTS enzyme IID, mannose-specific K02796 manZ; mannose PTS system EIID component D y0024 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D y2105 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D y1083 cpsG; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D y1710 cpsG; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D y1081 cpsB; mannose-1-phosphate guanyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D y1080 wcaG; putative nucleotide di-P-sugar epimerase or dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D y1068 putative glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D y1069 putative CDP-D-glucose-4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45] D y1070 putative CDP-4-keto-6-deoxy-d-glucose-3-dehydrase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1] D y1067 ascD; putative CDP-6-deoxy-delta-3,4-glucoseen reductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1] D y1071 putative CDP-paratose synthetase K12453 rfbS; CDP-paratose synthetase [EC:1.1.1.342] D y3888 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] C 00620 Pyruvate metabolism [PATH:ypk00620] D y0510 acs; acetyl CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D y1999 putative oxidoreductase, Fe-S subunit K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D y0767 aceE; pyruvate dehydrogenase (decarboxylase component) K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D y0768 aceF; pyruvate dehydrogenase (dihydrolipoyltransacetylase component) K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D y0769 lpdA; lipoamide dehydrogenase (NADH); component of 2-oxodehydrogenase and pyruvate complexes; L-protein of glycine cleavage complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D y0318 putative pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D y2790 pflB; formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D y2023 adhE; CoA-linked acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D y2667 adhC; alcohol dehydrogenase class III; formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D y1622 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D y1620 pta; phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D y1944 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40] D y2246 pykA; pyruvate kinase II, glucose stimulated K00873 PK; pyruvate kinase [EC:2.7.1.40] D y3119 accA; acetyl CoA carboxylase, carboxytransferase component, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D y0208 accB; acetyl CoA carboxylase, BCCP subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D y0209 accC; acetyl CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D y1601 accD; acetyl CoA carboxylase, carboxytransferase component, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D y2724 hypothetical protein K01512 acyP; acylphosphatase [EC:3.6.1.7] D y2596 lldD; L-lactate dehydrogenase K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] D y2821 poxB; pyruvate oxidase K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1] D y2004 ldhA; fermentative D-lactate dehydrogenase, NAD-dependent K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D y3012 dld; D-lactate dehydrogenase, FAD protein K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12] D y1957 gloA; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D y3097 gloB; probable hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D y2761 hypothetical protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D y4096 putative dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D y2658 sfcA; NAD-linked malate dehydrogenase (malic enzyme) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D y1449 putative multimodular enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D y0668 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D y0854 fumA; fumarase A K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D y2106 fumC; fumarase C K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D y0617 frdA; fumarate reductase, anaerobic, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D y0616 frdB; fumarate reductase, anaerobic, iron-sulfur protein subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D y0615 frdC; fumarate reductase, anaerobic, membrane anchor polypeptide K00246 frdC; succinate dehydrogenase subunit C D y0614 frdD; fumarate reductase, anaerobic, membrane anchor polypeptide K00247 frdD; succinate dehydrogenase subunit D D y0308 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D y3918 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D y1930 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D y0015 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D y3645 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:ypk00630] D y0016 aceA; isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1] D y0510 acs; acetyl CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D y0015 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D y0668 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D y3072 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D y2063 acnA; aconitate hydrase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3] D y0771 acnB; aconitate hydrase B K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D y2981 katE; catalase; hydroperoxidase HPII(III) K03781 katE; catalase [EC:1.11.1.6] D y4096 putative dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D y3939 gph; phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D y3804 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D y1322 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D y3292 gcvP; glycine decarboxylase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D y3294 gcvT; aminomethyltransferase of glycine cleavage system K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D y0769 lpdA; lipoamide dehydrogenase (NADH); component of 2-oxodehydrogenase and pyruvate complexes; L-protein of glycine cleavage complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D y0318 putative pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D y3293 gcvH; glycine cleavage complex protein H K02437 gcvH; glycine cleavage system H protein D y3849 hypothetical protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D y1692 putative tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D y2243 eda; 2-keto-3-deoxygluconate 6-phosphate aldolase/2-keto-4-hydroxyglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D y4077 fdoH; formate dehydrogenase-O, iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D y4076 fdoI; formate dehydrogenase, cytochrome B556 (FDO) subunit K00127 fdoI; formate dehydrogenase subunit gamma D y2150 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D y2341 putative histidine degradation enzyme K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] C 00640 Propanoate metabolism [PATH:ypk00640] D y0510 acs; acetyl CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D y1622 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D y1620 pta; phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D y0769 lpdA; lipoamide dehydrogenase (NADH); component of 2-oxodehydrogenase and pyruvate complexes; L-protein of glycine cleavage complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D y0318 putative pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D y2790 pflB; formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D y0204 putative dehydrogenase K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-] D y0464 fadB; 4-enzyme protein: 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase; delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase; enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D y1580 putative enzyme K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D y3119 accA; acetyl CoA carboxylase, carboxytransferase component, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D y0208 accB; acetyl CoA carboxylase, BCCP subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D y0209 accC; acetyl CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D y1601 accD; acetyl CoA carboxylase, carboxytransferase component, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D y1390 goaG; 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D y3065 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D y3064 sucD; succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D y1146 putative aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D y0771 acnB; aconitate hydrase B K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D y2729 mgsA; methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3] D y3499 putative oxidoreductase K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-] C 00650 Butanoate metabolism [PATH:ypk00650] D y0464 fadB; 4-enzyme protein: 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase; delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase; enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D y1580 putative enzyme K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D y4119 hypothetical K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D y2023 adhE; CoA-linked acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D y1692 putative tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D y3069 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D y3068 sdhB; succinate dehydrogenase, iron sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D y3071 sdhC; succinate dehydrogenase, cytochrome b556 K00241 sdhC; succinate dehydrogenase cytochrome b subunit D y3070 sdhD; succinate dehydrogenase, hydrophobic subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit D y0617 frdA; fumarate reductase, anaerobic, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D y0616 frdB; fumarate reductase, anaerobic, iron-sulfur protein subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D y0615 frdC; fumarate reductase, anaerobic, membrane anchor polypeptide K00246 frdC; succinate dehydrogenase subunit C D y0614 frdD; fumarate reductase, anaerobic, membrane anchor polypeptide K00247 frdD; succinate dehydrogenase subunit D D y1390 goaG; 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D y2894 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D y0176 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D y2790 pflB; formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D y1999 putative oxidoreductase, Fe-S subunit K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D y2712 pksG; putative hydroxymethylglutaryl-coenzyme A synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D y0336 ilvG; acetohydroxy acid synthase II K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D y2126 ilvB; acetolactate synthase I,valine-sensitive, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D y3640 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D y2127 ilvN; acetolactate synthase I, valine sensitive, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D y3639 ilvH; acetolactate synthase III, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:ypk00660] D y0336 ilvG; acetohydroxy acid synthase II K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D y2126 ilvB; acetolactate synthase I,valine-sensitive, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D y3640 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D y2127 ilvN; acetolactate synthase I, valine sensitive, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D y3639 ilvH; acetolactate synthase III, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D y2385 putative Coenzyme A transferase K18288 ict-Y; itaconate CoA-transferase [EC:2.8.3.-] D y3065 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D y3064 sucD; succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D y2384 putative transcriptional regulator K18290 ich-Y; itaconyl-CoA hydratase [EC:4.2.1.56] D y2383 putative citrate lyase K18292 E4.1.3.25; (S)-citramalyl-CoA lyase [EC:4.1.3.25] D y0055 hypothetical K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17] D y3647 leuC; 3-isopropylmalate isomerase (dehydratase) subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D y3648 leuD; isopropylmalate isomerase subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D y3646 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:ypk00562] D y1331 suhB; suppressor protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D y1810 appA; phosphoanhydride phosphorylase K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2] D y1154 putative myo-inositol catabolism protein iolB K03335 iolE; inosose dehydratase [EC:4.2.1.44] D y1147 putative malonic semialdehyde oxidative decarboxylase K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22] D y1155 putative myo-inositol catabolism protein iolB K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30] D y1153 putative myo-inositol catabolism protein iolB K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92] D y1146 putative aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D y0052 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:ypk00190] D y1630 nuoA; NADH dehydrogenase I chain A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D y1631 nuoB; NADH dehydrogenase I chain B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D y1632 nuoC; NADH dehydrogenase I chain C, D K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2] D y1633 nuoE; NADH dehydrogenase I chain E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D y1634 nuoF; NADH dehydrogenase I chain F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D y1635 nuoG; NADH dehydrogenase I chain G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D y1636 nuoH; NADH dehydrogenase I chain H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D y1637 nuoI; NADH dehydrogenase I chain I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D y1638 nuoJ; NADH dehydrogenase I chain J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D y1639 nuoK; NADH dehydrogenase I chain K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D y1640 nuoL; NADH dehydrogenase I chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D y1641 nuoM; NADH dehydrogenase I chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D y1642 nuoN; NADH dehydrogenase I chain N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D y1777 ndh; respiratory NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D y3069 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D y3068 sdhB; succinate dehydrogenase, iron sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D y3071 sdhC; succinate dehydrogenase, cytochrome b556 K00241 sdhC; succinate dehydrogenase cytochrome b subunit D y3070 sdhD; succinate dehydrogenase, hydrophobic subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit D y0617 frdA; fumarate reductase, anaerobic, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D y0616 frdB; fumarate reductase, anaerobic, iron-sulfur protein subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D y0615 frdC; fumarate reductase, anaerobic, membrane anchor polypeptide K00246 frdC; succinate dehydrogenase subunit C D y0614 frdD; fumarate reductase, anaerobic, membrane anchor polypeptide K00247 frdD; succinate dehydrogenase subunit D D y1018 cyoE; protoheme IX farnesyltransferase (haeme O biosynthesis) K02257 COX10; heme o synthase [EC:2.5.1.141] D y1019 cyoC; cytochrome o ubiquinol oxidase subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III D y1020 cyoB; cytochrome o ubiquinol oxidase subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3] D y1021 cyoA; cytochrome o ubiquinol oxidase subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3] D y3063 cydA; cytochrome d terminal oxidase, polypeptide subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D y3062 cydB; cytochrome d terminal oxidase, polypeptide subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D y3061 hypothetical K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D y4137 atpA; membrane-bound ATP synthase, F1 sector, alpha-subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D y4135 atpD; membrane-bound ATP synthase, F1 sector, beta-subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D y4136 atpG; membrane-bound ATP synthase, F1 sector, gamma-subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D y4138 atpH; membrane-bound ATP synthase, F1 sector, delta-subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D y4134 atpC; membrane-bound ATP synthase, F1 sector, epsilon-subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D y4141 atpB; membrane-bound ATP synthase, F0 sector, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a D y4139 atpF; membrane-bound ATP synthase, F0 sector, subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b D y4140 atpE; membrane-bound ATP synthase, F0 sector, subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c D y0663 ppa; inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D y1398 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:ypk00680] D y2667 adhC; alcohol dehydrogenase class III; formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D y2668 putative esterase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12] D y4077 fdoH; formate dehydrogenase-O, iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D y4076 fdoI; formate dehydrogenase, cytochrome B556 (FDO) subunit K00127 fdoI; formate dehydrogenase subunit gamma D y0601 fdhF; selenopolypeptide subunit of formate dehydrogenase H K22015 fdhF; formate dehydrogenase (hydrogenase) [EC:1.17.98.4 1.17.98.-] D y1322 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D y0814 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D y0308 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D y0668 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D y3869 biphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D y3307 fba; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D y0664 fbp; fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D y0048 glpX; hypothetical K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D y0059 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D y1729 hypothetical K10713 fae; 5,6,7,8-tetrahydromethanopterin hydro-lyase [EC:4.2.1.147] D y1622 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D y1620 pta; phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D y0510 acs; acetyl CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D y1930 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D y3048 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D y3724 gpmB; phosphoglyceromutase 2 K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D y0077 putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D y3301 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D y2896 putative dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D y2784 serC; 3-phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D y3738 serB; 3-phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 00910 Nitrogen metabolism [PATH:ypk00910] D y1446 napB; cytochrome c-type protein K02568 napB; nitrate reductase (cytochrome), electron transfer subunit D y3945 nirB; nitrite reductase (NAD(P)H) subunit K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15] D y3944 nirD; nitrite reductase (NAD(P)H) subunit K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15] D y2819 putative prismane K05601 hcp; hydroxylamine reductase [EC:1.7.99.1] D y3858 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D y3804 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D y0128 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D y0129 gltD; glutamate synthase, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D y0779 putative carbonic anhdrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D y3207 putative carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:ypk00920] D y1466 cysP; thiosulfate binding periplasmic protein of sulfate/thiosulfate ABC transporter K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D y0058 sbp; periplasmic sulfate-binding protein of sulfate/thiosulfate ABC transporter K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D y1467 cysU; inner membrane permease T of sulfate/thiosulfate ABC transporter K02046 cysU; sulfate/thiosulfate transport system permease protein D y1468 cysW; sulfate/thiosulfate permease K02047 cysW; sulfate/thiosulfate transport system permease protein D y1469 cysA; ATP-binding component of sulfate permease A protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D y3963 tauA; taurine-binding periplasmic protein of taurine ABC transport system K15551 tauA; taurine transport system substrate-binding protein D y3965 tauC; taurine ABC transport system inner membrane permease protein K15552 tauC; taurine transport system permease protein D y3964 tauB; taurine ATP-binding component of ABC transport system K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7] D y3966 tauD; taurine dioxygenase K03119 tauD; taurine dioxygenase [EC:1.14.11.17] D y0245 ssuA; solute-binding periplasmic protein of aliphatic sulfonates, ABC transporter K15553 ssuA; sulfonate transport system substrate-binding protein D y0243 ssuC; putative transport system permease protein of aliphatic sulfonates ABC transporter K15554 ssuC; sulfonate transport system permease protein D y0242 ssuB; putative ATP-binding component of a transport system of aliphatic sulfonates ABC transporter K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D y0244 hypothetical protein K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D y0246 hypothetical protein K00299 ssuE; FMN reductase [EC:1.5.1.38] D y0824 cysN; ATP-sulfurylase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D y0823 cysD; ATP-sulfurylase, subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D y0825 cysC; adenosine 5'-phosphosulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D y0654 cysQ; sulfite synthesis pathway protein K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D y0818 cysJ; sulfite reductase (NADPH), flavoprotein beta subunit K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D y0819 cysI; sulfite reductase, alpha subunit K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] D y2995 sseA; putative thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D y3899 glpE; protein of glp regulon K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1] D y0072 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D y1037 putative cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D y1489 cysK; cysteine synthase A, O-acetylserine sulfhydrolase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D y4039 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D y0013 metA; homoserine transsuccinylase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D y0864 dmsA; anaerobic dimethyl sulfoxide reductase subunit A K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3] D y1519 putative oxidoreductase, major subunit K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3] D y0865 dmsB; anaerobic dimethyl sulfoxide reductase subunit B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B D y1518 dmsB; anaerobic dimethyl sulfoxide reductase subunit B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B D y0866 dmsC; anaerobic dimethyl sulfoxide reductase subunit C K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C D y1517 putative membrane anchor protein for oxidoreductase K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:ypk00061] D y3119 accA; acetyl CoA carboxylase, carboxytransferase component, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D y0208 accB; acetyl CoA carboxylase, BCCP subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D y0209 accC; acetyl CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D y1601 accD; acetyl CoA carboxylase, carboxytransferase component, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D y1759 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D y1757 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D y2707 putative acyl transferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D y2334 hypothetical K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D y2335 hypothetical K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D y1756 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D y2714 fabF; putative beta-ketoacyl-acp synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D y1591 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D y1760 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D y2744 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D y2713 fabG; putative 3-ketoacyl-acyl carrier protein reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D y1758 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D y2740 fabA; beta-hydroxydecanoyl thioester dehydrase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D y2715 fabZ; putative myristoyl-acyl carrier dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D y3124 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D y4119 hypothetical K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D y3641 putative fatty acid biosynthesis protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D y2236 fadD; acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:ypk00071] D y0463 fadA; thiolase I K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D y1579 putative acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D y0464 fadB; 4-enzyme protein: 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase; delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase; enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D y1580 putative enzyme K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D y0946 putative acyl-CoA dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-] D y3641 putative fatty acid biosynthesis protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D y2236 fadD; acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D y3181 aas; 2-acyl-glycerophospho-ethanolamine acyltransferase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20] D y2667 adhC; alcohol dehydrogenase class III; formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D y2023 adhE; CoA-linked acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:ypk00561] D y3849 hypothetical protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D y0840 putative dihydroxyacetone kinase K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121] D y0842 hypothetical K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121] D y0047 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D y0876 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D y0570 plsB; glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D y1755 plsX; fatty acid/phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D y3532 hypothetical protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D y3506 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D y0571 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D y2582 putative alpha-D-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] C 00564 Glycerophospholipid metabolism [PATH:ypk00564] D y0073 gpsA; glycerol-3-phosphate dehydrogenase (NAD+) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D y3891 glpD; sn-glycerol-3-phosphate dehydrogenase (aerobic) K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D y0404 glpA; sn-glycerol-3-phosphate dehydrogenase (anaerobic), large subunit K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D y0405 glpB; sn-glycerol-3-phosphate dehydrogenase (anaerobic), membrane anchor subunit K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3] D y0406 glpC; sn-glycerol-3-phosphate dehydrogenase (anaerobic), K-small subunit K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C D y0570 plsB; glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D y3532 hypothetical protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D y3506 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D y0571 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D y0396 pldA; outer membrane phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D y0400 pldB; lysophospholipase L(2) K01048 pldB; lysophospholipase [EC:3.1.1.5] D y0403 glpQ; periplasmic glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D y0438 ugpQ; cytosolic glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D y3181 aas; 2-acyl-glycerophospho-ethanolamine acyltransferase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20] D y3843 cdh; CDP-diacylglycerol phosphotidylhydrolase K01521 cdh; CDP-diacylglycerol pyrophosphatase [EC:3.6.1.26] D y3129 cdsA; CDP-diglyceride synthetase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D y1116 putative phosphatidate cytidiltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D y0916 pssA; phosphatidylserine synthase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D y0620 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D y2441 pgsA; phosphatidylglycerophosphate synthetase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D y1004 pgpA; phosphatidylglycerophosphatase K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] D y2065 pgpB; membrane bound non-essential phosphatidylglycerophosphate phosphatase K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27] D y1306 hypothetical protein K18697 pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27] D y2033 cls; cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] C 00565 Ether lipid metabolism [PATH:ypk00565] D y0396 pldA; outer membrane phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00600 Sphingolipid metabolism [PATH:ypk00600] D y2328 hypothetical K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80] D y1817 lacZ; beta-D-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D y2582 putative alpha-D-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] C 00590 Arachidonic acid metabolism D y0396 pldA; outer membrane phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00591 Linoleic acid metabolism D y0396 pldA; outer membrane phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00592 alpha-Linolenic acid metabolism [PATH:ypk00592] D y0396 pldA; outer membrane phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D y0463 fadA; thiolase I K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D y1579 putative acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids [PATH:ypk01040] D y1099 tesA; acyl-CoA thioesterase I K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D y1043 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D y2039 hypothetical protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:ypk00230] D y3515 hypothetical protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D y3923 hypothetical protein K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-] D y3741 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D y1258 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D y2295 prsA; phosphoribosylpyrophosphate synthetase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D y1605 purF; amidophosphoribosyltransferase; PRPP amidotransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D y0501 purD; phosphoribosylglycinamide synthetase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D y1406 purN; phosphoribosylglycinamide formyltransferase 1 K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D y2533 purT; phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21] D y1309 purL; phosphoribosylformyl-glycineamide synthetase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D y1407 purM; phosphoribosylaminoimidazole synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D y1102 purK; phosphoribosylaminoimidazole carboxylase, CO(2)-fixing subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D y1103 purE; phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D y1421 purC; phosphoribosylaminoimidazole-succinocarboxamide synthetase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D y1797 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D y0502 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D y4040 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D y1059 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D y0831 surE; survival protein K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D y1199 nagD; N-acetylglucosamine metabolism protein K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D y3921 putative phosphatase K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-] D y1085 gsk; inosine-guanosine kinase K00892 gsk; inosine kinase [EC:2.7.1.73] D y3740 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D y0973 hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D y0913 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D y0778 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D y1362 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D y1349 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D y3725 hypothetical protein K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73] D y3331 putative ribosomal protein K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D y0963 gpt; guanine-hypoxanthine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22] D y1363 guaA; GMP synthetase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D y0758 guaC; GMP reductase K00364 guaC; GMP reductase [EC:1.7.1.7] D y0101 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D y1223 nrdE; ribonucleoside-diphosphate reductase 2, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D y2974 nrdA; ribonucleoside diphosphate reductase 1, alpha subunit, B1 K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D y1222 nrdF; ribonucleoside-diphosphate reductase 2, beta chain, frag K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D y2975 nrdB; ribonucleoside-diphosphate reductase 1, beta subunit, B2 K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D y0733 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D y0806 dgt; deoxyguanosine triphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1] D y1627 putative alpha helix protein K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89] D y0103 spoT; (p)ppGpp synthetase II K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D y1397 ppx; exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D y0811 relA; (p)ppGpp synthetase I (GTP pyrophosphokinase) K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5] D y0382 cyaA; adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1] D y3011 putative adenylate cyclase K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1] D y1271 hypothetical K01120 cpdP; 3',5'-cyclic-nucleotide phosphodiesterase [EC:3.1.4.17] D y0635 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D y2119 amn; AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4] D y3148 hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D y0653 cpdB; 2':3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D y1065 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D y0812 mazG; hypothetical protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D y3513 icc; regulator of lacZ K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] D y3685 apaH; diadenosine tetraphosphatase K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41] D y0825 cysC; adenosine 5'-phosphosulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D y0824 cysN; ATP-sulfurylase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D y0823 cysD; ATP-sulfurylase, subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D y1218 conserved hypothetical protein K16842 hpxB; allantoinase [EC:3.5.2.5] D y0939 putative N-carbamyl-L-amino acid amidohydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9] D y1239 ureC; urease (urea amidohydrolase) alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D y1238 ureB; urease (urea amidohydrolase) beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D y1237 ureA; urease (urea amidohydrolase) gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] D y0928 putative glutamyl-tRNA(gln) amidotransferase subunit A K22601 hpxY; oxamate carbamoyltransferase [EC:2.1.3.5] C 00240 Pyrimidine metabolism [PATH:ypk00240] D y3692 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D y3693 carA; carbamoyl-phosphate synthetase, glutamine (small) subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D y0161 pyrB; aspartate carbamoyltransferase, catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D y0162 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D y1746 pyrC; dihydro-orotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D y2755 pyrD; dihydro-orotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D y0096 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D y2069 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D y3134 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D y1349 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D y0812 mazG; hypothetical protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D y0197 hypothetical protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D y3592 hypothetical protein K07043 upp; UTP pyrophosphatase [EC:3.6.1.-] D y0813 pyrG; CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2] D y2782 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D y2154 hypothetical protein K08320 nudG; (d)CTP diphosphatase [EC:3.6.1.65] D y2646 udk; uridine/cytidine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D y0831 surE; survival protein K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D y1199 nagD; N-acetylglucosamine metabolism protein K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D y2128 putative phosphatase K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-] D y0444 udp; uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3] D y0973 hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D y1408 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D y0653 cpdB; 2':3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D y3148 hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D y2657 cdd; cytidine/deoxycytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D y3946 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D y0733 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D y2645 dcd; 2'-deoxycytidine 5'-triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D y1223 nrdE; ribonucleoside-diphosphate reductase 2, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D y2974 nrdA; ribonucleoside diphosphate reductase 1, alpha subunit, B1 K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D y1222 nrdF; ribonucleoside-diphosphate reductase 2, beta chain, frag K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D y2975 nrdB; ribonucleoside-diphosphate reductase 1, beta subunit, B2 K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D y1627 putative alpha helix protein K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89] D y1764 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D y0094 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D y2145 tdk; thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D y3171 thyA; thymidylate synthetase K00560 thyA; thymidylate synthase [EC:2.1.1.45] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:ypk00250] D y2760 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D y1289 nadB; quinolinate synthetase, B protein K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D y2787 ansB; periplasmic L-asparaginase II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D y2161 ansA; cytoplasmic L-asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D y0003 asnA; asparagine synthetase A K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D y1198 asnB; asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D y1628 putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D y0606 aspA; aspartate ammonia-lyase (aspartase) K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D y2595 argG; argininosuccinate synthetase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D y0312 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D y0635 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D y1797 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D y0161 pyrB; aspartate carbamoyltransferase, catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D y0162 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D y1390 goaG; 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D y2894 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D y0176 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D y0128 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D y0129 gltD; glutamate synthase, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D y3858 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D y2455 putA; proline dehydrogenase, P5C dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D y3804 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D y3692 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D y3693 carA; carbamoyl-phosphate synthetase, glutamine (small) subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D y3336 putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D y2372 putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D y4132 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D y1605 purF; amidophosphoribosyltransferase; PRPP amidotransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:ypk00260] D y0023 lysC; aspartokinase III, lysine sensitive K00928 lysC; aspartate kinase [EC:2.7.2.4] D y3718 thrA; aspartokinase I, homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D y0303 metL; aspartokinase II and homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D y3880 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D y3716 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D y3715 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D y2823 putative arylsulfatase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D y1322 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D y4096 putative dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D y3849 hypothetical protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D y3048 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D y3724 gpmB; phosphoglyceromutase 2 K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D y0077 putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D y3301 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D y2896 putative dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D y2784 serC; 3-phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D y3738 serB; 3-phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D y0081 kbl; 2-amino-3-ketobutyrate CoA ligase (glycine acetyltransferase) K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D y0080 tdh; threonine dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103] D y3292 gcvP; glycine decarboxylase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D y3294 gcvT; aminomethyltransferase of glycine cleavage system K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D y0769 lpdA; lipoamide dehydrogenase (NADH); component of 2-oxodehydrogenase and pyruvate complexes; L-protein of glycine cleavage complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D y0318 putative pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D y3293 gcvH; glycine cleavage complex protein H K02437 gcvH; glycine cleavage system H protein D y0916 pssA; phosphatidylserine synthase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D y2537 sdaA; L-serine deaminase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D y4105 tdcB; threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D y0339 ilvA; threonine deaminase (dehydratase) K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D y1592 putative resistance protein K25316 racX; amino-acid racemase [EC:5.1.1.10] D y1849 putative alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10] D y2047 trpA; tryptophan synthase, alpha protein K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D y2048 trpB; tryptophan synthase, beta protein K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D y2641 ysuJ; putative decarboxylase K13745 ddc; L-2,4-diaminobutyrate decarboxylase [EC:4.1.1.86] C 00270 Cysteine and methionine metabolism [PATH:ypk00270] D y0072 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D y1037 putative cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D y1489 cysK; cysteine synthase A, O-acetylserine sulfhydrolase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D y4039 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D y3496 metC; cystathionine beta-lyase (beta-cystathionase) K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D y0538 metC; cystathionine beta-lyase (beta-cystathionase) K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D y1475 putative aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D y0020 metH; B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase, repressor of metE and metF K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D y0442 metE; tetrahydropteroyltriglutamate methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D y3314 metK; methionine adenosyltransferase 1 K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D y0774 speD; S-adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D y0775 speE; spermidine synthase; putrescine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] D y1733 ypeI; putative homoserine lactone synthase K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184] D y3374 ytbI; putative N-acylhomoserine lactone synthase K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184] D y0805 pfs; hypothetical protein K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D y0913 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D y0579 tyrB; tyrosine aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D y1865 hypothetical protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D y0888 hypothetical protein K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D y0023 lysC; aspartokinase III, lysine sensitive K00928 lysC; aspartate kinase [EC:2.7.2.4] D y3718 thrA; aspartokinase I, homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D y0303 metL; aspartokinase II and homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D y3880 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D y0013 metA; homoserine transsuccinylase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D y0337 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D y0887 gshA; gamma-glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D y3321 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3] D y2760 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D y2995 sseA; putative thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D y1592 putative resistance protein K25316 racX; amino-acid racemase [EC:5.1.1.10] D y1849 putative alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10] D y2462 putative 1-aminocyclopropane-1-carboxylate deaminase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15] D y0668 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D y2537 sdaA; L-serine deaminase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D y1470 cysM; cysteine synthase B, O-acetylserine sulfhydrolase B K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144] D y3301 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D y2896 putative dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D y2784 serC; 3-phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:ypk00280] D y0337 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D y0769 lpdA; lipoamide dehydrogenase (NADH); component of 2-oxodehydrogenase and pyruvate complexes; L-protein of glycine cleavage complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D y0318 putative pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D y0464 fadB; 4-enzyme protein: 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase; delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase; enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D y1580 putative enzyme K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D y0463 fadA; thiolase I K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D y1579 putative acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D y1146 putative aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D y2712 pksG; putative hydroxymethylglutaryl-coenzyme A synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:ypk00290] D y4105 tdcB; threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D y0339 ilvA; threonine deaminase (dehydratase) K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D y3647 leuC; 3-isopropylmalate isomerase (dehydratase) subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D y3648 leuD; isopropylmalate isomerase subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D y3646 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D y0336 ilvG; acetohydroxy acid synthase II K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D y2126 ilvB; acetolactate synthase I,valine-sensitive, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D y3640 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D y2127 ilvN; acetolactate synthase I, valine sensitive, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D y3639 ilvH; acetolactate synthase III, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D y0345 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D y0338 ilvD; dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D y0337 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D y4099 avtA; alanine-alpha-ketoisovalerate K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66] D y1628 putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D y3645 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:ypk00300] D y0023 lysC; aspartokinase III, lysine sensitive K00928 lysC; aspartate kinase [EC:2.7.2.4] D y3718 thrA; aspartokinase I, homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D y0303 metL; aspartokinase II and homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D y3880 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D y1418 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D y3694 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D y3140 dapD; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D y3954 argD; acetylornithine delta-aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D y1427 dapE; N-succinyl-diaminopimelate deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D y0385 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D y3184 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D y2375 putative aminotransferase K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D y3631 murE; meso-diaminopimelate-adding enzyme K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D y3630 murF; D-alanine:D-alanine-adding enzyme K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:ypk00310] D y3066 sucB; 2-oxoglutarate dehydrogenase (dihydrolipoyltranssuccinase E2 component) K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D y0769 lpdA; lipoamide dehydrogenase (NADH); component of 2-oxodehydrogenase and pyruvate complexes; L-protein of glycine cleavage complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D y0318 putative pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D y0464 fadB; 4-enzyme protein: 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase; delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase; enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D y1580 putative enzyme K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D y1592 putative resistance protein K25316 racX; amino-acid racemase [EC:5.1.1.10] D y1849 putative alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10] D y2894 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D y0176 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D y2775 hypothetical protein K25986 ydcJ; 2-oxoadipate dioxygenase/decarboxylase [EC:1.13.11.93] D y1932 putative oxidase K26063 ydiJ; (R)-2-hydroxyglutarate dehydrogenase [EC:1.1.-.-] C 00220 Arginine biosynthesis [PATH:ypk00220] D y0740 argI; ornithine carbamoyltransferase 1 K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D y2595 argG; argininosuccinate synthetase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D y0312 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D y1239 ureC; urease (urea amidohydrolase) alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D y1238 ureB; urease (urea amidohydrolase) beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D y1237 ureA; urease (urea amidohydrolase) gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] D y3336 putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D y2372 putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D y3804 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D y3858 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D y2760 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D y1628 putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D y3162 argA; N-acetylglutamate synthase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1] D y0311 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D y0310 argC; N-acetyl-gamma-glutamylphosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D y3954 argD; acetylornithine delta-aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D y0309 argE; acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] C 00330 Arginine and proline metabolism [PATH:ypk00330] D y3946 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D y2987 adiA; biodegradative arginine decarboxylase K01584 adiA; arginine decarboxylase [EC:4.1.1.19] D y3313 speA; biosynthetic arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D y3325 hypothetical K10536 aguA; agmatine deiminase [EC:3.5.3.12] D y3324 hypothetical K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53] D y3347 speC; ornithine decarboxylase isozyme K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D y0775 speE; spermidine synthase; putrescine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] D y0774 speD; S-adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D y1405 speG; spermidine N1-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57] D y2348 hypothetical protein K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109] D y2346 hypothetical protein K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23] D y2349 cstC; acetylornithine delta-aminotransferase K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81] D y2347 putative aldehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71] D y2345 hypothetical protein K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96] D y3328 proC; putative pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D y2455 putA; proline dehydrogenase, P5C dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D y0966 proB; gamma-glutamate kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D y0967 proA; gamma-glutamylphosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D y2526 putative proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D y2760 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:ypk00340] D y2620 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D y2628 hisI; phosphoribosyl-amp cyclohydrolase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31] D y2626 hisA; N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D y2625 hisH; glutamine amidotransferase subunit of heterodimer with HisF K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D y2627 hisF; imidazole glycerol phosphate synthase subunit; imidazole glycerol phsphate synthase holoenzyme K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D y2623 hisB; imidazoleglycerolphosphate dehydratase; histidinol-phosphate phosphatase K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15] D y2622 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D y2621 hisD; L-histidinal:NAD+ oxidoreductase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D y4037 putative histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D y4038 putative urocanase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D y2340 putative imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D y2338 putative chlorohydrolase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13] D y2341 putative histidine degradation enzyme K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] C 00350 Tyrosine metabolism [PATH:ypk00350] D y2760 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D y2622 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D y0579 tyrB; tyrosine aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D y2996 dcd; putative aromatic-L-amino-acid decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105] D y2667 adhC; alcohol dehydrogenase class III; formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D y2023 adhE; CoA-linked acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D y2539 hpaB; putative component B of 4-hydroxyphenylacetic acid-hydroxylase K00483 hpaB; 4-hydroxyphenylacetate 3-monooxygenase [EC:1.14.14.9] D y2538 hypothetical protein K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36] D y2545 hpaD; putative 3,4-dihydroxyphenylacetate 2,3-dioxygenase K00455 hpaD; 3,4-dihydroxyphenylacetate 2,3-dioxygenase [EC:1.13.11.15] D y2546 hpaE; putative 5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase K00151 hpaE; 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC:1.2.1.60] D y2544 hpaF; putative 5-carboxymethyl-2-hydroxymuconate isomerase K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10] D y2542 hpaH; putative 2-oxo-hept-3-ene-1,7-dioate hydratase K02509 hpaH; 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-] D y2541 hypothetical protein K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52] D y2894 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D y0176 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00360 Phenylalanine metabolism [PATH:ypk00360] D y2996 dcd; putative aromatic-L-amino-acid decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105] D y2760 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D y2622 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D y0579 tyrB; tyrosine aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D y2174 dadA; D-amino acid dehydrogenase subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D y0870 katG; catalase; hydroperoxidase HPI(I) K03782 katG; catalase-peroxidase [EC:1.11.1.21] C 00380 Tryptophan metabolism [PATH:ypk00380] D y3066 sucB; 2-oxoglutarate dehydrogenase (dihydrolipoyltranssuccinase E2 component) K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D y0769 lpdA; lipoamide dehydrogenase (NADH); component of 2-oxodehydrogenase and pyruvate complexes; L-protein of glycine cleavage complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D y0318 putative pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D y0464 fadB; 4-enzyme protein: 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase; delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase; enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D y1580 putative enzyme K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D y2996 dcd; putative aromatic-L-amino-acid decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105] D y2981 katE; catalase; hydroperoxidase HPII(III) K03781 katE; catalase [EC:1.11.1.6] D y0870 katG; catalase; hydroperoxidase HPI(I) K03782 katG; catalase-peroxidase [EC:1.11.1.21] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:ypk00400] D y0903 aroF; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D y1928 aroH; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, tryptophan repressible) K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D y3049 aroG; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D y3934 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D y0207 putative dehydroquinase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D y4028 aroE; dehydroshikimate reductase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D y3933 aroK; shikimate kinase I K00891 aroK; shikimate kinase [EC:2.7.1.71] D y0972 aroL; shikimate kinase II K00891 aroK; shikimate kinase [EC:2.7.1.71] D y2783 aroA; 5-enolpyruvylshikimate-3-phosphate synthetase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D y1585 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D y2051 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D y2049 trpC; N-(5-phosphoribosyl)anthranilate isomerase K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24] D y2047 trpA; tryptophan synthase, alpha protein K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D y2048 trpB; tryptophan synthase, beta protein K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D y0904 tyrA; chorismate mutase-T K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12] D y2828 putative chorismate mutase K04093 pheA1; chorismate mutase [EC:5.4.99.5] D y0847 hypothetical K01713 pheC; cyclohexadienyl dehydratase [EC:4.2.1.51 4.2.1.91] D y2760 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D y2622 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D y0579 tyrB; tyrosine aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:ypk00410] D y0784 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D y1390 goaG; 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D y0785 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D y0464 fadB; 4-enzyme protein: 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase; delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase; enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D y1580 putative enzyme K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D y1146 putative aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] C 00430 Taurine and hypotaurine metabolism [PATH:ypk00430] D y0985 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D y0986 hypothetical K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D y3966 tauD; taurine dioxygenase K03119 tauD; taurine dioxygenase [EC:1.14.11.17] D y1620 pta; phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D y1622 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism [PATH:ypk00440] D y0727 phnI; phosphonate metabolism protein K06164 phnI; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI [EC:2.7.8.37] D y0729 phnG; phosphonate metabolism protein K06166 phnG; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG [EC:2.7.8.37] D y0728 phnH; phosphonate metabolism protein K06165 phnH; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH [EC:2.7.8.37] D y0723 phnL; ATP-binding component of phosphonate ABC transporter K05780 phnL; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [EC:2.7.8.37] D y0722 phnM; phosphonate metabolism protein K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63] D y0726 phnJ; phosphonate metabolism protein K06163 phnJ; alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [EC:4.7.1.1] D y0720 phnP; phosphonate metabolism K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55] C 00450 Selenocompound metabolism [PATH:ypk00450] D y3496 metC; cystathionine beta-lyase (beta-cystathionase) K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D y0538 metC; cystathionine beta-lyase (beta-cystathionase) K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D y1475 putative aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D y0020 metH; B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase, repressor of metE and metF K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D y0442 metE; tetrahydropteroyltriglutamate methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D y1938 hypothetical protein K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D y2802 trxB; thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D y0824 cysN; ATP-sulfurylase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D y0823 cysD; ATP-sulfurylase, subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D y2157 selD; selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D y4074 selA; selenocysteine synthase: L-seryl-tRNA (Ser) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D y2648 metG; methionine tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:ypk00460] D y3562 glycosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D y1128 putative beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D y0985 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D y0986 hypothetical K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D y2787 ansB; periplasmic L-asparaginase II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D y2161 ansA; cytoplasmic L-asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D y0003 asnA; asparagine synthetase A K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D y1322 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:ypk00470] D y0578 alr; alanine racemase 1 K01775 alr; alanine racemase [EC:5.1.1.1] D y3624 ddlB; D-alanine-D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D y1592 putative resistance protein K25316 racX; amino-acid racemase [EC:5.1.1.10] D y1849 putative alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10] D y3336 putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D y2372 putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D y0326 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D y3628 murD; UDP-N-acetylmuramoylalanine-D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D y1991 putative muconate cycloisomerase I K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25] D y2462 putative 1-aminocyclopropane-1-carboxylate deaminase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15] D y0385 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D y3184 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D y2836 putative ABC transport protein K23120 cntL; histidine 2-aminobutanoyltransferase [EC:2.5.1.152 2.5.1.-] D y2835 hypothetical K23122 cntM; staphylopine/pseudopaline/yersinopine synthase [EC:1.5.1.52 1.5.1.-] D y2174 dadA; D-amino acid dehydrogenase subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] C 00480 Glutathione metabolism [PATH:ypk00480] D y0985 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D y0986 hypothetical K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D y1276 putative lactam utilization protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D y1273 putative carboxylase K23123 pxpB; 5-oxoprolinase (ATP-hydrolysing) subunit B [EC:3.5.2.9] D y1275 putative carboxylase K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9] D y0887 gshA; gamma-glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D y3321 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3] D y0746 pepA; aminopeptidase A/I K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D y1342 pepB; putative peptidase K07751 pepB; PepB aminopeptidase [EC:3.4.11.23] D y2756 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D y0960 pepD; aminoacyl-histidine dipeptidase (peptidase D) K01270 pepD; dipeptidase D [EC:3.4.13.-] D y1968 gst; glutathionine S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D y2871 putative transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D y3852 gor; glutathione oxidoreductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7] D y1802 icdA; isocitrate dehydrogenase, specific for NADP+ K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D y2629 gnd; gluconate-6-phosphate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D y2244 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D y1915 btuE; vitamin B12-binding periplasmic protein of vitamin B12 ABC transporter K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D y0319 peroxiredoxin family protein K24136 pgdX; glutathione-dependent peroxiredoxin [EC:1.11.1.27] D y3347 speC; ornithine decarboxylase isozyme K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D y0775 speE; spermidine synthase; putrescine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:ypk00511] D y1817 lacZ; beta-D-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] C 00540 Lipopolysaccharide biosynthesis [PATH:ypk00540] D y3123 lpxA; UDP-N-acetylglucosamine acetyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D y3620 lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D y3125 lpxD; UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D y1105 hypothetical protein K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D y3122 lpxB; tetraacyldisaccharide-1-P sythetase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D y2776 putative enzyme K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D y0149 putative isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D y2286 kdsA; 2-dehydro-3-deoxyphosphooctulonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D y0150 hypothetical protein K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D y2772 kdsB; CTP:CMP-3-deoxy-D-manno-octulosonate transferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D y0086 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D y2247 msbB; suppressor of htrB, heat shock protein K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243] D y2907 hypothetical protein K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29] D y1960 hypothetical protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D y4034 hypothetical protein K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42] D y2563 crcA; hypothetical protein K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251] D y1921 hypothetical protein K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43] D y0236 ddg; putative heat shock protein K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242] D y0947 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D y3524 putative kinase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D y3103 putative phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D y0083 rfaD; ADP-L-glycero-D-mannoheptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D y0085 rfaC; heptosyl transferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D y0084 rfaF; ADP-heptose--lps heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D y3763 rfaQ; lipopolysaccharide biosynthesis protein K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25] C 00542 O-Antigen repeat unit biosynthesis [PATH:ypk00542] D y0362 rfe; UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:ypk00541] D y2630 galF; probably a UDP-gal transferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D y2631 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D y3043 galE; UDP-galactose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D y2147 putative UDP-glucose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D y0367 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D y0366 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D y0369 wecE; putative regulator K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59] D y0368 wecD; hypothetical protein K16704 rffC; dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase [EC:2.3.1.210] D y1068 putative glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D y1069 putative CDP-D-glucose-4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45] D y1070 putative CDP-4-keto-6-deoxy-d-glucose-3-dehydrase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1] D y1067 ascD; putative CDP-6-deoxy-delta-3,4-glucoseen reductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1] D y1071 putative CDP-paratose synthetase K12453 rfbS; CDP-paratose synthetase [EC:1.1.1.342] D y2105 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D y1083 cpsG; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D y1710 cpsG; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D y1081 cpsB; mannose-1-phosphate guanyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D y1080 wcaG; putative nucleotide di-P-sugar epimerase or dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D y4133 glmU; N-acetyl glucosamine-1-phosphate uridyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D y0364 wecB; UDP-N-acetyl glucosamine -2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D y0365 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] C 00550 Peptidoglycan biosynthesis [PATH:ypk00550] D y0140 murA; UDP-N-glucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D y0471 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D y3625 murC; UDP-N-acetyl-muramate:alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D y3628 murD; UDP-N-acetylmuramoylalanine-D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D y3631 murE; meso-diaminopimelate-adding enzyme K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D y3624 ddlB; D-alanine-D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D y3630 murF; D-alanine:D-alanine-adding enzyme K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D y3130 hypothetical protein K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D y3530 bacA; bacitracin resistance protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D y2859 hypothetical protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D y3629 mraY; putative phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D y3626 murG; UDP-N-acetylglucosamine:N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D y0124 mtgA; putative peptidoglycan enzyme K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D y3924 mrcA; peptidoglycan synthetase; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D y0795 mrcB; peptidoglycan synthetase; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D y1141 putative penicillin-binding protein K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D y1178 mrdA; peptidoglycan synthetase, penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D y3632 ftsI; peptidoglycan synthetase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D y2864 dacC; D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D y1175 dacA; D-alanyl-D-alanine carboxypeptidase, fraction A K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D y0678 dacB; D-alanyl-D-alanine carboxypeptidase, fraction B K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] C 00552 Teichoic acid biosynthesis [PATH:ypk00552] D y3530 bacA; bacitracin resistance protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D y2859 hypothetical protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D y0362 rfe; UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:ypk00543] D y0362 rfe; UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D y0373 wecG; probable UDP-N-acetyl-D-mannosaminuronic acid transferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180] D y0371 wecF; TDP-Fuc4NAc:lipid II Fuc4NAc transferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325] D y2357 hmsR; hypothetical protein K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-] D y2356 hmsS; inner membrane protein K11937 pgaD; biofilm PGA synthesis protein PgaD D y0072 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:ypk00730] D y0491 thiC; thiC protein K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D y1373 thiD; phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D y0489 thiF; thiF protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] D y1334 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D y2182 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D y1012 putative oxidoreductase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D y0487 thiH; thiH protein K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19] D y1008 dxs; 1-deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D y0488 thiG; thiG protein K03149 thiG; thiazole synthase [EC:2.8.1.10] D y0490 thiE; thiE protein K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D y1003 thiL; thiamin-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D y0622 hypothetical protein K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D y2130 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D y1773 hypothetical K07251 thiK; thiamine kinase [EC:2.7.1.89] D y1065 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:ypk00740] D y2064 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D y1000 ribD; bifunctional pyrimidine deaminase/reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D y0388 putative phosphatase K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104] D y3520 ribB; 3,4 dihydroxy-2-butanone-4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] D y1001 ribH; riboflavin synthase, beta chain K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D y1946 ribE; riboflavin synthase, alpha chain K00793 ribE; riboflavin synthase [EC:2.5.1.9] D y3701 ribF; putative regulator K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D y1810 appA; phosphoanhydride phosphorylase K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2] D y2538 hypothetical protein K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36] D y0462 ubiB; ferrisiderophore reductase K05368 fre; NAD(P)H-flavin reductase [EC:1.5.1.41] D y0246 hypothetical protein K00299 ssuE; FMN reductase [EC:1.5.1.38] D y3515 hypothetical protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D y1800 putative phosphohydrolase K12152 nudJ; phosphatase NudJ [EC:3.6.1.-] D y1606 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:ypk00750] D y1965 pdxH; pyridoxinephosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D y1967 pdxY; pyridoxal kinase 2 / pyridoxine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] D y3309 epd; D-erythrose 4-phosphate dehydrogenase K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72] D y1597 pdxB; erythronate-4-phosphate dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290] D y2784 serC; 3-phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D y3682 pdxA; pyridoxine biosynthesis protein K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D y1300 pdxJ; pyridoxine biosynthesis K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D y3715 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:ypk00760] D y1289 nadB; quinolinate synthetase, B protein K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D y3052 nadA; quinolinate synthetase K03517 nadA; quinolinate synthase [EC:2.5.1.72] D y0762 nadC; quinolinate phosphoribosyltransferase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D y2757 pncB; nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D y3740 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D y0831 surE; survival protein K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D y1199 nagD; N-acetylglucosamine metabolism protein K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D y1181 hypothetical protein K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D y0812 mazG; hypothetical protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D y0493 hypothetical protein K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D y1316 putative NH3-dependent NAD(+) synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D y0880 hypothetical protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D y2162 hypothetical protein K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] D y1790 cobB; putative nicotinic acid mononucleotide:5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D y3074 hypothetical protein K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D y0321 udhA; putative oxidoreductase K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1] D y2135 pntA; pyridine nucleotide transhydrogenase, alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D y2134 pntB; pyridine nucleotide transhydrogenase, beta subunit K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] D y2894 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D y0176 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:ypk00770] D y0336 ilvG; acetohydroxy acid synthase II K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D y2126 ilvB; acetolactate synthase I,valine-sensitive, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D y3640 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D y2127 ilvN; acetolactate synthase I, valine sensitive, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D y3639 ilvH; acetolactate synthase III, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D y0345 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D y0338 ilvD; dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D y0786 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D y1014 apbA; apbA protein K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D y0785 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D y0473 coaA; pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33] D y0093 dfp; flavoprotein affecting synthesis of DNA and pantothenate metabolism K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D y0812 mazG; hypothetical protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D y0088 kdtB; putative enzyme of lipopolysaccharide synthesis K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D y0757 putative DNA repair protein K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D y1301 acpS; CoA:apo-[acyl-carrier-protein] pantetheinephosphotransferase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D y0989 putative glycoprotein K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14] D y0337 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D y0784 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] C 00780 Biotin metabolism [PATH:ypk00780] D y3029 bioC; biotin biosynthesis protein K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197] D y2714 fabF; putative beta-ketoacyl-acp synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D y1591 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D y1760 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D y2744 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D y2713 fabG; putative 3-ketoacyl-acyl carrier protein reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D y1758 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D y2715 fabZ; putative myristoyl-acyl carrier dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D y3124 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D y3908 bioH; biotin biosynthesis protein K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85] D y3030 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D y3032 bioA; 7,8-diaminopelargonic acid synthetase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D y2111 hypothetical protein K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D y3028 bioD; dethiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D y3031 bioB; biotin synthetase K01012 bioB; biotin synthase [EC:2.8.1.6] D y0472 birA; biotin-[acetyl CoA carboxylase] holoenzyme synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D y3182 putative reductase K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-] C 00785 Lipoic acid metabolism [PATH:ypk00785] D y1173 lipB; lipoate biosynthesis protein K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D y1171 lipA; lipoate biosynthesis protein A K03644 lipA; lipoyl synthase [EC:2.8.1.8] D y1926 lplA; lipoate-protein ligase A K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D y0769 lpdA; lipoamide dehydrogenase (NADH); component of 2-oxodehydrogenase and pyruvate complexes; L-protein of glycine cleavage complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D y0318 putative pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D y0767 aceE; pyruvate dehydrogenase (decarboxylase component) K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D y0768 aceF; pyruvate dehydrogenase (dihydrolipoyltransacetylase component) K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D y3067 sucA; 2-oxoglutarate dehydrogenase (decarboxylase component) K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D y3066 sucB; 2-oxoglutarate dehydrogenase (dihydrolipoyltranssuccinase E2 component) K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D y3292 gcvP; glycine decarboxylase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D y3294 gcvT; aminomethyltransferase of glycine cleavage system K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D y3293 gcvH; glycine cleavage complex protein H K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:ypk00790] D y2664 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D y2130 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D y2256 ntpA; dATP pyrophosphohydrolase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67] D y3531 putative kinase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D y0787 folK; 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D y0683 folP; 7,8-dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D y3688 folA; dihydrofolate reductase type I K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D y1602 folC; dihydrofolate:folylpolyglutamate synthetase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D y2064 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D y3953 pabA; p-aminobenzoate synthetase, component II K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85] D y2535 pabB; p-aminobenzoate synthetase, component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85] D y1762 pabC; 4-amino-4-deoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] D y0817 putative 6-pyruvoyl tetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D y0816 hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D y1034 hypothetical protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D y3147 hypothetical protein K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D y3023 moaA; molybdopterin biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D y3021 moaC; molybdopterin biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D y3019 moaE; molybdopterin converting factor, subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D y3710 mog; putative molybdochetalase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D y2673 moeA; molybdopterin biosynthesis protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D y3815 mobA; molybdopterin-guanine dinucleotide synthase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:ypk00670] D y3688 folA; dihydrofolate reductase type I K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D y1110 folD; 5,10-methylene-tetrahydrofolate dehydrogenase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D y1322 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D y1406 purN; phosphoribosylglycinamide formyltransferase 1 K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D y0502 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D y4022 fmt; 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D y3294 gcvT; aminomethyltransferase of glycine cleavage system K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D y0020 metH; B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase, repressor of metE and metF K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D y3171 thyA; thymidylate synthetase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D y2150 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D y0304 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D y0548 hypothetical K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D y3300 putative ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:ypk00860] D y1498 gltX; glutamate tRNA synthetase, catalytic subunit K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D y2291 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D y0799 hemL; glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D y0459 hemB; 5-aminolevulinate dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D y0381 hemC; porphobilinogen deaminase; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D y0380 hemD; uroporphyrinogen III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D y0496 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D y1451 hemF; coproporphyrinogen III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D y3807 hemN; O2-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D y0469 hemG; protoporphyrin oxidase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3] D y1066 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D y0379 hemX; uroporphyrinogen III methylase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D y3941 cysG; uroporphyrinogen III methylase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4] D y1018 cyoE; protoheme IX farnesyltransferase (haeme O biosynthesis) K02257 COX10; heme o synthase [EC:2.5.1.141] D cobS.pl cobS; putative porphyrin biosynthetic enzyme K09882 cobS; cobaltochelatase CobS [EC:6.6.1.2] D y2055 btuR; cob(I)alamin adenolsyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D y3988 bfr; bacterioferrin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:ypk00130] D y0568 ubiC; chorismate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40] D y0569 ubiA; 4-hydroxybenzoate-octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D y0461 putative oxidoreductase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D y1606 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D y3295 visC; hypothetical protein K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240] D y2973 ubiG; 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D y3296 ubiH; 2-octaprenyl-6-methoxyphynol hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D y0449 ubiE; COQ5 methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D y1196 hypothetical protein K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60] D y1659 menF; isochorismate hydroxymutase 2 K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] D y1660 menD; 2-oxoglutarate decarboxylase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9] D y1661 putative enzyme K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20] D y1663 menC; o-succinylbenzoyl-CoA synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113] D y1664 menE; o-succinylbenzoate-CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26] D y1662 menB; dihydroxynaphtoic acid synthetase K01661 menB; naphthoate synthase [EC:4.1.3.36] D y1933 hypothetical protein K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28] D y0293 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D y2449 wrbA; trp repressor binding protein K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D y1806 putative oxidoreductase K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:ypk00900] D y1008 dxs; 1-deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D y3131 putative ATP-binding component of a transport system K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D y0828 hypothetical protein K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D y2293 hypothetical protein K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D y0829 hypothetical protein K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D y1353 gcpE; hypothetical protein K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D y3697 lytB; penicillin tolerance protein K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D y2712 pksG; putative hydroxymethylglutaryl-coenzyme A synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D y1606 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D y1009 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D y0671 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D y3130 hypothetical protein K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation [PATH:ypk00907] D y0464 fadB; 4-enzyme protein: 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase; delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase; enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D y1580 putative enzyme K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D y0463 fadA; thiolase I K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D y1579 putative acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D y3310 tktA; transketolase 1 isozyme K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:ypk00523] D y0367 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D y0366 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:ypk01053] D y1659 menF; isochorismate hydroxymutase 2 K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] D y2584 ybtD; yersiniabactin biosynthesis component K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-] D y2394 ybtS; anthranilate synthase K04781 mbtI; salicylate synthetase [EC:5.4.4.2 4.2.99.21] D y3419 hypothetical K12241 pchG; pyochelin biosynthesis protein PchG D y2403 ybtE; salicyl-AMP ligase K04783 irp5; yersiniabactin salicyl-AMP ligase [EC:6.3.2.-] D y2399 irp2; HMWP2 nonribosomal peptide synthetase K04784 irp2; yersiniabactin nonribosomal peptide synthetase D y2401 ybtU; thiazolinyl-S-HMWP1 reductase K04785 irp3; yersiniabactin synthetase, thiazolinyl reductase component D y2400 irp1; HMWP1 nonribosomal peptide/polyketide synthase K04786 irp1; yersiniabactin nonribosomal peptide/polyketide synthase C 01055 Biosynthesis of vancomycin group antibiotics D y0366 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:ypk00946] D y3562 glycosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D y1128 putative beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis [PATH:ypk00332] D y0966 proB; gamma-glutamate kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D y0967 proA; gamma-glutamylphosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:ypk00261] D y0824 cysN; ATP-sulfurylase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D y0823 cysD; ATP-sulfurylase, subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D y0023 lysC; aspartokinase III, lysine sensitive K00928 lysC; aspartate kinase [EC:2.7.2.4] D y3718 thrA; aspartokinase I, homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D y0303 metL; aspartokinase II and homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D y3880 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D y1418 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D y3694 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:ypk00521] D y1505 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D y1258 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D y1331 suhB; suppressor protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D y0367 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D y0366 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D y1505 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:ypk00525] D y0367 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D y0366 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:ypk00401] D y0904 tyrA; chorismate mutase-T K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12] D y2760 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D y2622 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D y0579 tyrB; tyrosine aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D y2051 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D y1757 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D y2707 putative acyl transferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D y2713 fabG; putative 3-ketoacyl-acyl carrier protein reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D y1758 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D y1759 acpP; acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:ypk00999] D y3314 metK; methionine adenosyltransferase 1 K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D y4028 aroE; dehydroshikimate reductase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D y3562 glycosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D y1128 putative beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites [PATH:ypk00997] D y3384 iucD; lysine : N6-hydroxylase K03897 iucD; lysine N6-hydroxylase [EC:1.14.13.59] D y2640 ysuI; putative siderophore biosynthetic protein K03897 iucD; lysine N6-hydroxylase [EC:1.14.13.59] D y3382 iucB; acetyl CoA:N6-hydroxylsyine acetyl transferase K03896 iucB; acetyl CoA:N6-hydroxylysine acetyl transferase [EC:2.3.1.102] D y3381 iucA2; aerobactin synthetase (subunit alpha) K03894 iucA; N2-citryl-N6-acetyl-N6-hydroxylysine synthase [EC:6.3.2.38] D y3380 iucA1; aerobactin synthetase (subunit alpha) K03894 iucA; N2-citryl-N6-acetyl-N6-hydroxylysine synthase [EC:6.3.2.38] D y3383 iucC; aerobactin synthetase (subunit beta) K03895 iucC; aerobactin synthase [EC:6.3.2.39] B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:ypk00362] D y0463 fadA; thiolase I K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D y1579 putative acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D y3839 hypothetical K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D y2310 hypothetical K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D y0218 putative decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D y0054 hypothetical K16515 galB; 4-oxalomesaconate hydratase [EC:4.2.1.83] D y0055 hypothetical K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17] D y1580 putative enzyme K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D y0464 fadB; 4-enzyme protein: 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase; delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase; enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] C 00627 Aminobenzoate degradation [PATH:ypk00627] D y2724 hypothetical protein K01512 acyP; acylphosphatase [EC:3.6.1.7] D y1606 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00364 Fluorobenzoate degradation [PATH:ypk00364] D y0443 putative carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00625 Chloroalkane and chloroalkene degradation [PATH:ypk00625] D y2667 adhC; alcohol dehydrogenase class III; formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D y2023 adhE; CoA-linked acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:ypk00361] D y0443 putative carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00623 Toluene degradation [PATH:ypk00623] D y0443 putative carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00622 Xylene degradation D y3839 hypothetical K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00633 Nitrotoluene degradation [PATH:ypk00633] D y1958 nemA; N-ethylmaleimide reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] C 00642 Ethylbenzene degradation D y0463 fadA; thiolase I K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D y1579 putative acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation C 00791 Atrazine degradation D y1239 ureC; urease (urea amidohydrolase) alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D y1238 ureB; urease (urea amidohydrolase) beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D y1237 ureA; urease (urea amidohydrolase) gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] C 00930 Caprolactam degradation [PATH:ypk00930] D y0464 fadB; 4-enzyme protein: 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase; delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase; enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D y1580 putative enzyme K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] C 00363 Bisphenol degradation C 00621 Dioxin degradation D y3839 hypothetical K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00626 Naphthalene degradation [PATH:ypk00626] D y2667 adhC; alcohol dehydrogenase class III; formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D y2023 adhE; CoA-linked acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:ypk03020] D y0484 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D y0485 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D y4015 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D y0102 rpoZ; RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:ypk03010] D y2781 rpsA; 30S ribosomal subunit protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D y3137 rpsB; 30S ribosomal subunit protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D y3995 rpsC; 30S ribosomal subunit protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D y4014 rpsD; 30S ribosomal subunit protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D y4007 rpsE; 30S ribosomal subunit protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D y0645 rpsF; 30S ribosomal subunit protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D y3984 rpsG; 30S ribosomal subunit protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D y4003 rpsH; 30S ribosomal subunit protein S8, and regulator K02994 RP-S8; small subunit ribosomal protein S8 D y0133 rpsI; 30S ribosomal subunit protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D y3989 rpsJ; 30S ribosomal subunit protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D y4013 rpsK; 30S ribosomal subunit protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D y3983 rpsL; 30S ribosomal subunit protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D y4012 rpsM; 30S ribosomal subunit protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D y4002 rpsN; 30S ribosomal subunit protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D y0691 rpsO; 30S ribosomal subunit protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D y0894 rpsP; 30S ribosomal subunit protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D y0646 rpsR; 30S ribosomal subunit protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D y3702 rpsT; 30S ribosomal subunit protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D y3535 rpsU; 30S ribosomal subunit protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D y0481 rplA; 50S ribosomal subunit protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D y3993 rplB; 50S ribosomal subunit protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D y3990 rplC; 50S ribosomal subunit protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D y3991 rplD; 50S ribosomal subunit protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D y4001 rplE; 50S ribosomal subunit protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D y4004 rplF; 50S ribosomal subunit protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D y0483 rplL; 50S ribosomal subunit protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D y0647 rplI; 50S ribosomal subunit protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D y0482 rplJ; 50S ribosomal subunit protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D y0480 rplK; 50S ribosomal subunit protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D y0134 rplM; 50S ribosomal subunit protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D y3999 rplN; 50S ribosomal subunit protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D y4009 rplO; 50S ribosomal subunit protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D y3996 rplP; 50S ribosomal subunit protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D y4016 rplQ; 50S ribosomal subunit protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D y4006 rplR; 50S ribosomal subunit protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D y0897 rplS; 50S ribosomal subunit protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D y1905 rplT; 50S ribosomal subunit protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D y0672 rplU; 50S ribosomal subunit protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D y3994 rplV; 50S ribosomal subunit protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D y3992 rplW; 50S ribosomal subunit protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D y4000 rplX; 50S ribosomal subunit protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D y2920 rplY; 50S ribosomal subunit protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D y0673 rpmA; 50S ribosomal subunit protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D y3998 rpmC; 50S ribosomal subunit protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D y4008 rpmD; 50S ribosomal subunit protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D y1048 putative ribosomal protein K02909 RP-L31; large subunit ribosomal protein L31 D y0299 rpmE; 50S ribosomal subunit protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D y1753 rpmF; 50S ribosomal subunit protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D y0091 rpmG; 50S ribosomal subunit protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D y4114 rpmH; 50S ribosomal subunit protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D yr001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D yr005 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D yr008 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D yr011 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D yr014 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D yr020 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D yr024 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D yr002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D yr006 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D yr009 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D yr012 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D yr015 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D yr019 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D yr023 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D yr003 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D yr004 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D yr007 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D yr010 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D yr013 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D yr016 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D yr018 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D yr022 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:ypk00970] D yt011 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D yt028 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D yt036 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D yt037 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D yt029 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D yt042 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D yt006 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D yt024 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D yt025 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D yt026 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D yt048 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D yt053 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D yt054 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D yt004 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D yt063 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D yt062 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D yt050 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D yt030 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D yt032 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D yt033 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D yt001 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D yt016 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D yt064 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D yt003 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D yt071 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D yt014 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D yt067 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D yt018 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D yt051 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D yt019 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D yt007 tRNA-His K14226 tRNA-His; tRNA His D yt010 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D yt027 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D yt020 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D yt034 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D yt022 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D yt008 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D yt070 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D yt049 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D yt041 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D yt061 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D yt060 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D yt052 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D yt059 tRNA-OTHER K14229 tRNA-Lys; tRNA Lys D yt031 tRNA-Met K14230 tRNA-Met; tRNA Met D yt035 tRNA-Met K14230 tRNA-Met; tRNA Met D yt069 tRNA-Met K14230 tRNA-Met; tRNA Met D yt021 tRNA-Met K14230 tRNA-Met; tRNA Met D yt065 tRNA-Met K14230 tRNA-Met; tRNA Met D yt066 tRNA-Met K14230 tRNA-Met; tRNA Met D yt017 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D yt068 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D yt009 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D yt072 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D yt056 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D yt023 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D yt058 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D yt046 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D yt047 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D yt055 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D yt002 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D yt015 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D yt012 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D yt057 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D yt005 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D yt013 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D yt045 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D yt038 tRNA-Val K14237 tRNA-Val; tRNA Val D yt039 tRNA-Val K14237 tRNA-Val; tRNA Val D yt040 tRNA-Val K14237 tRNA-Val; tRNA Val D yt043 tRNA-Val K14237 tRNA-Val; tRNA Val D yt044 tRNA-Val K14237 tRNA-Val; tRNA Val D yt073 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D y1498 gltX; glutamate tRNA synthetase, catalytic subunit K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D y1205 glnS; glutamine tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D y0883 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D y2258 aspS; aspartate tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D y2758 asnS; asparagine tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D y4090 glyQ; glycine tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D y4089 glyS; glycine tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D y1903 thrS; threonine tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D y2796 serS; serine tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D y4074 selA; selenocysteine synthase: L-seryl-tRNA (Ser) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D y1107 cysS; cysteine tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D y2648 metG; methionine tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D y4022 fmt; 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D y0743 valS; valine tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D y1184 leuS; leucine tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D y3700 ileS; isoleucine tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D y3272 lysS; lysine tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D y2266 argS; arginine tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D y3109 proS; proline tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D y1354 hisS; histidine tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D y1908 pheS; phenylalanine tRNA synthetase, alpha-subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D y1909 pheT; phenylalanine tRNA synthetase, beta-subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D y1966 tyrS; tyrosine tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D y3940 trpS; tryptophan tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:ypk03060] D y4010 prlA; putative ATPase subunit of translocase K03076 secY; preprotein translocase subunit SecY D y0478 secE; preprotein translocase K03073 secE; preprotein translocase subunit SecE D y0685 secG; protein export - membrane protein K03075 secG; preprotein translocase subunit SecG D y0993 secD; protein secretion, membrane protein K03072 secD; preprotein translocase subunit SecD D y0994 secF; protein secretion, membrane protein K03074 secF; preprotein translocase subunit SecF D y0992 hypothetical protein K03210 yajC; preprotein translocase subunit YajC D y4117 60 kDa inner-membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D y3617 secA; preprotein translocase; secretion protein K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D y0074 secB; protein export; molecular chaperone K03071 secB; preprotein translocase subunit SecB D y3618 hypothetical protein K13301 secM; secretion monitor D y0892 ffh; GTP-binding export factor K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D yr017 4.5S RNA K01983 ffs; SRP RNA D y0416 ftsY; cell division membrane protein K03110 ftsY; fused signal recognition particle receptor D y0452 hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA D y0453 hypothetical protein K03117 tatB; sec-independent protein translocase protein TatB D y0454 hypothetical protein K03118 tatC; sec-independent protein translocase protein TatC D y1170 hypothetical protein K03425 tatE; sec-independent protein translocase protein TatE D y1296 lepB; leader peptidase (signal peptidase I) K03100 lepB; signal peptidase I [EC:3.4.21.89] D y3699 lspA; prolipoprotein signal peptidase (SPase II) K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:ypk04122] D y1334 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D y2182 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D y2995 sseA; putative thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D y0409 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D y3981 hypothetical protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B D y3980 hypothetical protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C D y3979 hypothetical protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D y2723 putative sulfite reductase K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D y1799 hypothetical protein K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D y3019 moaE; molybdopterin converting factor, subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D y3023 moaA; molybdopterin biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D y3020 moaD; molybdopterin biosynthesis protein K03636 moaD; sulfur-carrier protein D y2674 moeB; molybdopterin biosynthesis protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D y3021 moaC; molybdopterin biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D y3710 mog; putative molybdochetalase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D y1012 putative oxidoreductase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D y0489 thiF; thiF protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] C 03050 Proteasome C 03018 RNA degradation [PATH:ypk03018] D y3174 putative invasion protein K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D y1749 rne; RNase E K08300 rne; ribonuclease E [EC:3.1.26.12] D y0359 rhlB; putative ATP-dependent RNA helicase K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D y0814 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D y0694 pnp; polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D y0637 vacB; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D y0696 deaD; inducible ATP-independent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D y0397 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D y0361 rho; transcription termination factor Rho; polarity suppressor K03628 rho; transcription termination factor Rho D y0059 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D y3706 dnaK; chaperone Hsp70 K04043 dnaK; molecular chaperone DnaK D y0609 mopA; GroEL protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D y0630 hfq; putative host factor I for bacteriophage Q beta replication K03666 hfq; host factor-I protein D y1398 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D y0788 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:ypk03030] D y2525 holE; DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D y3094 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D y3120 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Y1106.pl putative DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D y1060 dnaX; DNA polymerase III, tau and gamma subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D y1765 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D y1182 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D y3752 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D y0745 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D y4112 dnaN; DNA polymerase III, beta-subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D y0577 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D y3536 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D y0582 ssb; ssDNA-binding protein K03111 ssb; single-strand DNA-binding protein D y3095 rnhA; RNase HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D y3121 rnhB; RNAse HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D y3811 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D y1492 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D y0100 putative enzyme K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:ypk03410] D y2080 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D y1281 ung; uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D y3339 mutY; adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D y0090 mutM; formamidopyrimidine DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D y2473 putative DNA repair enzyme K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D y4091 tag; 3-methyl-adenine DNA glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D y2153 xthA; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D y2879 nfo; endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D y3811 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D y3274 recJ; ssDNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D y1492 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D y0100 putative enzyme K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:ypk03420] D y1784 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D y0580 uvrA; excision nuclease subunit A K03701 uvrA; excinuclease ABC subunit A D y3026 uvrB; excision nuclease subunit B K03702 uvrB; excinuclease ABC subunit B D y2442 uvrC; excinuclease ABC, subunit C K03703 uvrC; excinuclease ABC subunit C D y0389 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D y3811 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D y1492 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D y0100 putative enzyme K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:ypk03430] D y0835 mutS; methyl-directed mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS D y0628 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D y3175 mutH; methyl-directed mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH D y0389 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D y2610 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D y1361 xseA; exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D y1010 xseB; exonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D y3274 recJ; ssDNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D y0582 ssb; ssDNA-binding protein K03111 ssb; single-strand DNA-binding protein D y3120 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Y1106.pl putative DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D y4112 dnaN; DNA polymerase III, beta-subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D y1060 dnaX; DNA polymerase III, tau and gamma subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D y1182 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D y1765 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D y3094 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D y2525 holE; DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D y0745 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D y3752 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D y1492 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D y0100 putative enzyme K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D y3937 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D y2224 putative DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] C 03440 Homologous recombination [PATH:ypk03440] D y3274 recJ; ssDNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D y0582 ssb; ssDNA-binding protein K03111 ssb; single-strand DNA-binding protein D y4111 recF; ssDNA and dsDNA binding protein K03629 recF; DNA replication and repair protein RecF D y1299 recO; recO protein K03584 recO; DNA repair protein RecO (recombination protein O) D y1062 recR; recombination and repair protein K06187 recR; recombination protein RecR D y0881 recA; DNA-dependent ATPase, DNA- and ATP-dependent coprotease K03553 recA; recombination protein RecA D y3811 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D y2253 ruvA; Holliday junction helicase subunit B K03550 ruvA; holliday junction DNA helicase RuvA D y2252 ruvB; Holliday junction helicase subunit A K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D y2254 ruvC; Holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D y0105 recG; DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D y3164 recB; DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D y3166 recC; DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D y3163 recD; DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D y3120 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Y1106.pl putative DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D y4112 dnaN; DNA polymerase III, beta-subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D y1060 dnaX; DNA polymerase III, tau and gamma subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D y1182 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D y1765 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D y3094 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D y2525 holE; DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D y0745 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D y3752 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D y0298 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D y1056 putative primosomal replication protein N K04067 priC; primosomal replication protein N'' C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 [PATH:ypk03250] D y3951 ppiA; peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:ypk02010] D y1466 cysP; thiosulfate binding periplasmic protein of sulfate/thiosulfate ABC transporter K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D y0058 sbp; periplasmic sulfate-binding protein of sulfate/thiosulfate ABC transporter K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D y1467 cysU; inner membrane permease T of sulfate/thiosulfate ABC transporter K02046 cysU; sulfate/thiosulfate transport system permease protein D y1468 cysW; sulfate/thiosulfate permease K02047 cysW; sulfate/thiosulfate transport system permease protein D y1469 cysA; ATP-binding component of sulfate permease A protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D y3963 tauA; taurine-binding periplasmic protein of taurine ABC transport system K15551 tauA; taurine transport system substrate-binding protein D y3965 tauC; taurine ABC transport system inner membrane permease protein K15552 tauC; taurine transport system permease protein D y3964 tauB; taurine ATP-binding component of ABC transport system K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7] D y0245 ssuA; solute-binding periplasmic protein of aliphatic sulfonates, ABC transporter K15553 ssuA; sulfonate transport system substrate-binding protein D y0243 ssuC; putative transport system permease protein of aliphatic sulfonates ABC transporter K15554 ssuC; sulfonate transport system permease protein D y0242 ssuB; putative ATP-binding component of a transport system of aliphatic sulfonates ABC transporter K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D y3037 modA; molybdate-binding periplasmic protein of molybdate ABC transporter K02020 modA; molybdate transport system substrate-binding protein D y0057 modA; molybdate-binding periplasmic protein precursor K02020 modA; molybdate transport system substrate-binding protein D y3036 modB; inner membrane permease protein of molybdate ABC transport system K02018 modB; molybdate transport system permease protein D y3035 modC; ATP-binding component of molybdate transport K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D y3041 modF; ATP-binding component of molybdate transport system K05776 modF; molybdate transport system ATP-binding protein D y1526 yfuA; solute-binding periplasmic protein for iron ABC transporter K02012 afuA; iron(III) transport system substrate-binding protein D y1430 putative solute-binding periplasmic protein of ABC transporter K02012 afuA; iron(III) transport system substrate-binding protein D y1525 yfuB; inner membrane permease of iron ABC transporter K02011 afuB; iron(III) transport system permease protein D y1431 putative inner membrane permease of ABC transporter K02011 afuB; iron(III) transport system permease protein D y1524 yfuC; ATP-binding protein of iron ABC transporter K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D y1432 potA; spermidine/putrescine transport ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D y3651 tbpA; thiamin-binding periplasmic protein of ABC transporter K02064 thiB; thiamine transport system substrate-binding protein D y3652 thiP; putative ABC transport system thiamine permease protein K02063 thiP; thiamine transport system permease protein D y3653 thiQ; putative ATP-binding component of a transport system K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D y2851 potF; periplasmic putrescine-binding protein of putrescine ABC transporter K11073 potF; putrescine transport system substrate-binding protein D y2847 potI; putrescine ABC transport protein; permease K11074 potI; putrescine transport system permease protein D y2848 potH; putrescine permease of ABC transporter K11075 potH; putrescine transport system permease protein D y2849 potG; ATP-binding component of putrescine ABC transport system K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D y1219 proX; solute-binding periplasmic protein of high-affinity glycine betaine/proline ABC transporterhigh-affinity ABC transport system for glycine betaine and proline K02002 proX; glycine betaine/proline transport system substrate-binding protein D y1220 proW; permease of high-affinity ABC transport system for glycine betaine and proline K02001 proW; glycine betaine/proline transport system permease protein D y1221 proV; ATP-binding component of high affinity transport system for glycine, betaine and proline K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D y2994 yehZ1; hypothetical K05845 opuC; osmoprotectant transport system substrate-binding protein D y2993 yehZ2; hypothetical K05845 opuC; osmoprotectant transport system substrate-binding protein D y2992 putative ABC transport system inner membrane permease K05846 opuBD; osmoprotectant transport system permease protein D y2990 putative inner membrane permease of ABC transport system K05846 opuBD; osmoprotectant transport system permease protein D y2991 putative ATP-binding component of ABC transporter K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D y0028 malE; periplasmic maltose-binding protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein D y0027 malF; inner membrane permease of maltose ABC transporter K10109 malF; maltose/maltodextrin transport system permease protein D y0026 malG; inner membrane permease of maltose/maltodextran ABC transporter K10110 malG; maltose/maltodextrin transport system permease protein D y0031 malK; ATP-binding component of ABC transport system for maltose K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D y1709 malK; inner membrane ABC transporter K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D y3242 putative transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D y2413 hypothetical K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D y2414 malK; ATP-binding component of transport system for maltose K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D y3569 ATP-binding component of sn-glycerol 3-phosphate transport system K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D y0715 ugpC; ATP-binding component of sn-glycerol 3-phosphate transport system K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D y3241 putative periplasmic binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein D y3240 malF; putative malF-type permease K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D y3239 malG; putative malG type permease K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D y1881 togB; putative solute-binding periplasmic protein of oligogalacturonide ABC transporter K10192 togB; oligogalacturonide transport system substrate-binding protein D y1884 togM; putative inner membrane permease of oligogalacturonide ABC transporter K10193 togM; oligogalacturonide transport system permease protein D y1883 togN; putative inner membrane permease of oligogalacturonide ABC transporter K10194 togN; oligogalacturonide transport system permease protein D y1882 togA; ABC transporter, ATP-binding protein K10195 togA; oligogalacturonide transport system ATP-binding protein D y0143 hypothetical protein K07323 mlaC; phospholipid transport system substrate-binding protein D y0144 hypothetical protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D y0145 hypothetical protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D y0142 hypothetical protein K07122 mlaB; phospholipid transport system transporter-binding protein D y0146 putative ATP-binding component of ABC transport system K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D y1687 putative solute binding protein of ABC transporter K10439 rbsB; ribose transport system substrate-binding protein D y3346 periplasmic binding protein for ABC transporter K10439 rbsB; ribose transport system substrate-binding protein D y3867 D-ribose-binding periplasmic protein of ABC transporter K10439 rbsB; ribose transport system substrate-binding protein D y1689 rbsC; D-ribose high-affinity transport system K10440 rbsC; ribose transport system permease protein D y3344 putative permease of ABC transporter K10440 rbsC; ribose transport system permease protein D y3866 rbsC; D-ribose high-affinity transport protein K10440 rbsC; ribose transport system permease protein D y1688 rbsA; ATP-binding component of D-ribose high-affinity transport system K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D y3345 putative ATP-binding component of ABC transport system K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D y3865 rbsA; ATP-binding component of D-ribose high-affinity transport system K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D y0007 rbsD; D-ribose high-affinity transport system; membrane-associated protein K06726 rbsD; D-ribose pyranase [EC:5.4.99.62] D y2096 araF; L-arabinose-binding periplasmic protein K10537 araF; L-arabinose transport system substrate-binding protein D y2098 araH; high-affinity L-arabinose transport system membrane protein K10538 araH; L-arabinose transport system permease protein D y2097 araG; ATP-binding component of high-affinity L-arabinose transport system K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12] D y0328 solute-binding periplasmic protein of ABC transporter K23508 ytfQ; galactofuranose transport system substrate-binding protein D y0331 putative ABC transporter permease protein K23509 ytfT; galactofuranose transport system permease protein D y0330 putative ABC transport system inner membrane permease protein K23509 ytfT; galactofuranose transport system permease protein D y0329 putative ATP-binding component of ATP transport system K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9] D y2662 mglB; periplasmic D-galactose-binding ABC transport protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D y2660 mglC; inner membrane permease of galactoside ABC transporter K10541 mglC; methyl-galactoside transport system permease protein D y2661 mglA; ATP-binding component of methyl-galactoside ABC transporter and galactose taxis K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11] D y4056 xylF; xylose binding periplasmic protein of ABC transport system K10543 xylF; D-xylose transport system substrate-binding protein D y4054 xylH; inner membrane permease of D-xylose ABC transporter K10544 xylH; D-xylose transport system permease protein D y4055 xylG; putative ATP-binding protein of xylose ABC transport system K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D y0871 putative solute-binding periplasmic protein of ABC transporter K17202 eryG; erythritol transport system substrate-binding protein D y0874 rbsC; sugar (D-ribose) transport system permease protein K17203 eryF; erythritol transport system permease protein D y0873 putative ATP-binding protein of ABC transport system K17204 eryE; erythritol transport system ATP-binding protein D y3245 putative periplasmic binding protein precursor K17205 xltC; putative xylitol transport system substrate-binding protein D y3244 rbsC; D-ribose high-affinity transport system protein K17206 xltB; putative xylitol transport system permease protein D y3243 rbsA; ATP-binding component of D-ribose high-affinity transport system K17207 xltA; putative xylitol transport system ATP-binding protein D y1149 putative periplasmic solute-binding protein of ABC transporter K17208 ibpA; inositol transport system substrate-binding protein D y1151 rbsC; D-ribose high-affinity transport system K17209 iatP; inositol transport system permease protein D y1150 rbsA; ATP-binding component of D-ribose high-affinity transport system K17210 iatA; inositol transport system ATP-binding protein D y0434 ugpB; periplasmic binding protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D y0435 ugpA; integral membrane protein, permease K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D y0436 ugpE; inner membrane permease K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D y0437 ugpC; ATP-binding component K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D y4131 pstS; periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D y0980 putative solute-binding periplasmic protein for ABC transport system K02040 pstS; phosphate transport system substrate-binding protein D y4130 pstC; inner membrane permease K02037 pstC; phosphate transport system permease protein D y1399 putative inner membrane permease of high-affinity phosphate-specific transport system K02037 pstC; phosphate transport system permease protein D y4129 pstA; inner membrane permease K02038 pstA; phosphate transport system permease protein D y1400 putative inner membrane permease of high-affinity phosphate-specific ABC transporter K02038 pstA; phosphate transport system permease protein D y4128 pstB; ATP-binding component of high-affinity phosphate-specific ABC transport system K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D y1401 pstB; phosphate-specific transport component K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D y3006 putative solute-binding protein of ABC transporter K02044 phnD; phosphonate transport system substrate-binding protein D y3004 putative inner membrane permease of ABC transporter K02042 phnE; phosphonate transport system permease protein D y3005 putative inner membrane permease of ABC transporter K02042 phnE; phosphonate transport system permease protein D y3007 phnC; ATP-binding component of phosphonate transport K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D y1609 hisM; histidine ABC transporter, inner membrane permease K10015 hisM; histidine transport system permease protein D y1608 hisQ; histidine ABC transport system inner membrane permease K10016 hisQ; histidine transport system permease protein D y1610 hisP; ATP-binding component of histidine ABC transport K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1] D y1607 hisJ; histidine-binding periplasmic protein of high-affinity histidine transport system K10014 hisJ; histidine transport system substrate-binding protein D y1675 glnH; glutamine-binding periplasmic protein for high-affinity glutamine ABC transporter K10036 glnH; glutamine transport system substrate-binding protein D y1674 glnP; inner membrane permease K10037 glnP; glutamine transport system permease protein D y1673 glnQ; ATP-binding component of glutamine high-affinity glutamine ABC transport system K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D y2844 artJ; arginine 3rd transport system periplasmic binding protein K09996 artJ; arginine transport system substrate-binding protein D y2830 artI; arginine 3rd transport system periplasmic binding protein K09997 artI; arginine transport system substrate-binding protein D y2832 artM; arginine 3rd transport system permease protein K09998 artM; arginine transport system permease protein D y2831 artQ; arginine 3rd transport system permease protein K09999 artQ; arginine transport system permease protein D y2829 artP; ATP-binding component of 3rd arginine transport system K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1] D y1189 gltI; solute-binding periplasmic protein of glutamate/aspartate ABC transporter K10001 gltI; glutamate/aspartate transport system substrate-binding protein D y1187 gltK; glutamate/aspartate inner membrane permease K10002 gltK; glutamate/aspartate transport system permease protein D y1188 gltJ; glutamate/aspartate ABC transport system inner membrane permease K10003 gltJ; glutamate/aspartate transport system permease protein D y1186 gltL; ATP-binding protein of glutamate/aspartate transport system K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D y2460 fliY; putative periplasmic cysteine-binding ABC transport protein K02424 tcyA; L-cystine transport system substrate-binding protein D y2459 putative ABC transporter permease for cystine K10009 tcyB; L-cystine transport system permease protein D y2458 putative ATP-binding component of ABC transport system K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D y0422 livK; high-affinity leucine-specificleucine-specific-binding periplasmic protein of high-affinity branched-chain amino acid ABC transporter transport system; periplasmic binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D y0423 livH; high-affinity branched-chain amino acid ABC transport system membrane permease K01997 livH; branched-chain amino acid transport system permease protein D y0424 livM; inner membrane permease of high-affinity branched-chain amino acid ABC transport system K01998 livM; branched-chain amino acid transport system permease protein D y0425 livG; ATP-binding component of high-affinity branched-chain amino acid ABC transport system K01995 livG; branched-chain amino acid transport system ATP-binding protein D y0426 livF; ATP-binding component of leucine transport K01996 livF; branched-chain amino acid transport system ATP-binding protein D y3106 putative lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D y2867 putative lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D y2865 putative transport system permease protein K02072 metI; D-methionine transport system permease protein D y3105 putative transport system permease protein K02072 metI; D-methionine transport system permease protein D y3104 abc; ATP-binding component of a transporter K02071 metN; D-methionine transport system ATP-binding protein D y2866 abc; ATP-binding component of ATP transporter K02071 metN; D-methionine transport system ATP-binding protein D y3002 putative Leu/Ile/Val/Thr binding protein of ABC transporter K11959 urtA; urea transport system substrate-binding protein D y3001 putative branched chain inner membrane permease of ABC transporter K11960 urtB; urea transport system permease protein D y3000 putative inner membrane permease of ABC transporter K11961 urtC; urea transport system permease protein D y2999 hypothetical ABC transporter ATP-binding protein K11962 urtD; urea transport system ATP-binding protein D y2998 livF; ATP-binding component of ABC transporter K11963 urtE; urea transport system ATP-binding protein D y3027 putative ATP-binding protein of ABC transporter K11963 urtE; urea transport system ATP-binding protein D y2026 oppA; oligopeptide ABC transporter; periplasmic binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D y1993 putative transport periplasmic protein K15580 oppA; oligopeptide transport system substrate-binding protein D y2027 oppB; oligopeptide ABC transporter; permease protein K15581 oppB; oligopeptide transport system permease protein D y2028 oppC; oligopeptide ABC transporter; permease protein K15582 oppC; oligopeptide transport system permease protein D y2029 oppD; ATP-binding protein of oligopetide ABC transporter K15583 oppD; oligopeptide transport system ATP-binding protein D y2030 oppF; ATP-binding protein of oligopetide ABC transporter K10823 oppF; oligopeptide transport system ATP-binding protein D y3825 dppA; periplasmic dipeptide transport protein of ABC transporter K12368 dppA; dipeptide transport system substrate-binding protein D y3826 dppB; dipeptide transport system inner membrane permease K12369 dppB; dipeptide transport system permease protein D y3828 dppC; dipeptide transport system permease protein 2 K12370 dppC; dipeptide transport system permease protein D y3829 dppD; putative ATP-binding component of dipeptide ABC transport system K12371 dppD; dipeptide transport system ATP-binding protein D y3830 dppF; putative ATP-binding component of dipeptide ABC transport system K12372 dppF; dipeptide transport system ATP-binding protein D y1977 sapA; peptide-binding periplasmic protein of peptide ABC transport system K19226 sapA; cationic peptide transport system substrate-binding protein D y1976 sapB; peptide ABC transport inner membrane permease protein K19227 sapB; cationic peptide transport system permease protein D y1975 sapC; homolog of Salmonella peptide transport permease protein K19228 sapC; cationic peptide transport system permease protein D y1974 sapD; putative ATP-binding protein of peptide ABC transport system K19229 sapD; cationic peptide transport system ATP-binding protein D y1973 sapF; putative ATP-binding protein of peptide ABC transport system K19230 sapF; cationic peptide transport system ATP-binding protein D y2910 hypothetical protein K13893 yejA; microcin C transport system substrate-binding protein D y2911 putative transport system permease protein K13894 yejB; microcin C transport system permease protein D y2912 putative transport system permease protein K13895 yejE; microcin C transport system permease protein D y2913 putative ATP-binding component of a transport system K13896 yejF; microcin C transport system ATP-binding protein D y3477 fepB; ferric enterobactin (enterochelin) binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein D y2634 ysuA; putative solute-binding periplasmic protein of ABC transporter K25286 fagD; iron-siderophore transport system substrate-binding protein D y2635 ysuB; putative permease for iron transport system K23186 fepD; iron-siderophore transport system permease protein D y2636 ysuC; putative inner membrane permease of ABC transporter K23187 fepG; iron-siderophore transport system permease protein D y2637 ysuD; putative ATP-binding component for iron transport system K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D y0797 fhuD; solute-binding periplasmic protein of hydroxamate-dependent iron ABC transporter K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D y0798 fhuB; inner membrane permease of ABC transporter K23228 fhuB; ferric hydroxamate transport system permease protein D y0796 fhuC; ATP-binding component of hydroxymate-dependent iron ABC transporter K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D y0804 hypothetical protein K06858 btuF; vitamin B12 transport system substrate-binding protein D y1914 btuC; vitamin B12 transport permease protein K06073 btuC; vitamin B12 transport system permease protein D y1916 btuD; ATP-binding component of vitamin B12 transport system K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8] D y2249 znuA; solute-binding periplasmic protein for zinc ABC transporter K09815 znuA; zinc transport system substrate-binding protein D y2251 znuB; inner membrane permease of zinc ABC transporter K09816 znuB; zinc transport system permease protein D y2250 znuC; ATP-binding component of zinc ABC transport system K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D y1897 yfeA; periplasmic-binding protein for iron and manganese ABC transporter K11604 sitA; manganese/iron transport system substrate-binding protein D y1895 yfeC; permease for iron and manganese ABC transporter K11605 sitC; manganese/iron transport system permease protein D y1894 yfeD; permease for iron and manganese ABC transporter K11606 sitD; manganese/iron transport system permease protein D y1896 yfeB; ATP-binding protein for iron and manganese ABC transporter K11607 sitB; manganese/iron transport system ATP-binding protein D y3772 putative LACI-type transcriptional regulator K10555 lsrB; AI-2 transport system substrate-binding protein D y3770 putative ABC transport system permease protein K10556 lsrC; AI-2 transport system permease protein D y3771 putative ABC transport system permease protein K10557 lsrD; AI-2 transport system permease protein D y3769 putative ATP-binding component of a transport system K10558 lsrA; AI-2 transport system ATP-binding protein D y1785 hypothetical protein K09808 lolC_E; lipoprotein-releasing system permease protein D y1787 putative kinase K09808 lolC_E; lipoprotein-releasing system permease protein D y1786 putative ATP-binding component of a transport system K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D y1570 ccmD; heme exporter protein D K02196 ccmD; heme exporter protein D D y1569 ccmC; heme exporter protein C K02195 ccmC; heme exporter protein C D y1568 ccmB; heme exporter protein B K02194 ccmB; heme exporter protein B D y1567 ccmA; ATP binding protein of heme exporter A K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D y0747 hypothetical protein K07091 lptF; lipopolysaccharide export system permease protein D y0748 hypothetical protein K11720 lptG; lipopolysaccharide export system permease protein D y0153 putative ATP-binding component of ABC transport system K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D y0418 ftsX; cell division membrane protein K09811 ftsX; cell division transport system permease protein D y0417 ftsE; ATP-binding component of a membrane-associated complex involved in cell division K09812 ftsE; cell division transport system ATP-binding protein D y2397 ybtP; permease and ATP-binding protein of yersiniabactin-iron ABC transporter K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D y3422 ATP-binding cassette transporter A K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D y2396 ybtQ; permease and ATP-binding protein of yersiniabactin-iron ABC transporter K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D y3423 ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D y2777 msbA; ATP-binding transport protein; multicopy suppressor of htrB K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D y1039 mdlA; ATP-binding component of a transport system K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D y1040 mdlB; putative ATP-binding component of a transport system K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D y0286 putative secretion ATPase K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D y1158 putative ABC transporter, ATP-binding protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D y0315 hasD; secretion ATPase, Type I secretion system K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D y2805 cydC; ATP-binding component of cytochrome-related transport K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D y2803 cydD; ATP-binding component of cytochrome-related transport K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D y2813 putative ATP-binding component of ABC transport system K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D y1480 putative ATP-binding component of a transport system K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] C 02060 Phosphotransferase system (PTS) [PATH:ypk02060] D y1487 ptsI; PEP-protein phosphotransferase system enzyme I K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D y1488 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D y1485 crr; PTS system, glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D y1767 ptsG; PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D y1203 nagE; PTS system, N-acetylglucosamine-specific enzyme IIABC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D y0166 treB; PTS system enzyme IIBC K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201] D y4087 mtlA; PTS system mannitol-specific enzyme IIABC components K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D y1253 celC; PEP-dependent phosphotransferase IIA component for cellobiose, arbutin, and salicin K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D y1251 celA; PEP-dependent phosphotransferase enzyme IV for cellobiose, arbutin, and salicin K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D y1252 celB; PEP-dependent phosphotransferase enzyme II for cellobiose, arbutin, and salicin K02761 celB; cellobiose PTS system EIIC component D y2551 manX; PTS enzyme IIAB, mannose-specific K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D y2552 manY; PTS enzyme IIC, mannose-specific K02795 manY; mannose PTS system EIIC component D y2553 manZ; PTS enzyme IID, mannose-specific K02796 manZ; mannose PTS system EIID component D y3222 hypothetical K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D y3219 agaV; PTS family enzyme IIB component 2 (EIIB-AGA) K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-] D y3220 putative permease protein K02746 agaW; N-acetylgalactosamine PTS system EIIC component D y3221 putative PTS permease protein K02747 agaE; N-acetylgalactosamine PTS system EIID component D y1618 putative phosphotransferase system IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D y1617 hypothetical K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D y1615 conserved hypothetical protein K03475 ulaA; ascorbate PTS system EIIC component D y2887 fruB; PTS system, fructose-specific IIA/fpr component K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202] D y2885 fruA; PTS system, fructose-specific IIBC transport protein K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D y2886 fruK; fructose-1-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D y3173 ptsP; PTS system enzyme I K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D y0159 ptsO; phosphocarrier protein HPr-like NPr K08485 ptsO; phosphocarrier protein NPr D y0157 ptsN; phosphotransferase system enzyme IIA K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:ypk03070] D y3516 hasF; outer membrane channel protein K12340 tolC; outer membrane protein D y0518 putative type III secretion system component K03221 yscF; type III secretion protein F D y0514 putative secretin K03219 yscC; type III secretion protein C D y0530 putative type III secretion system component K03226 yscR; type III secretion protein R D y0531 putative type III secretion system component K03227 yscS; type III secretion protein S D y0532 putative type III secretion system component K03228 yscT; type III secretion protein T D y0533 putative type III secretion system component K03229 yscU; type III secretion protein U D y0525 putative type III secretion system component K03230 yscV; type III secretion protein V D y0526 fliI; flagellum-specific ATP synthase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8] D y0529 putative type III secretion system component K03225 yscQ; type III secretion protein Q D y3204 putative general secretion protein K02453 gspD; general secretion pathway protein D D y3194 hypothetical K02465 gspS; general secretion pathway protein S D y3205 hypothetical K02452 gspC; general secretion pathway protein C D y3202 hofF; putative general protein secretion protein K02455 gspF; general secretion pathway protein F D y3201 hofG; putative general protein secretion protein K02456 gspG; general secretion pathway protein G D y3200 hypothetical K02457 gspH; general secretion pathway protein H D y3199 hypothetical K02459 gspJ; general secretion pathway protein J D y3198 hypothetical K02460 gspK; general secretion pathway protein K D y3197 putative L-like GSP protein K02461 gspL; general secretion pathway protein L D y3203 putative general secretion protein K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D y3195 putative type IV prepilin peptidase K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-] D y0993 secD; protein secretion, membrane protein K03072 secD; preprotein translocase subunit SecD D y0994 secF; protein secretion, membrane protein K03074 secF; preprotein translocase subunit SecF D y0478 secE; preprotein translocase K03073 secE; preprotein translocase subunit SecE D y0685 secG; protein export - membrane protein K03075 secG; preprotein translocase subunit SecG D y4010 prlA; putative ATPase subunit of translocase K03076 secY; preprotein translocase subunit SecY D y0992 hypothetical protein K03210 yajC; preprotein translocase subunit YajC D y4117 60 kDa inner-membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D y3617 secA; preprotein translocase; secretion protein K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D y3618 hypothetical protein K13301 secM; secretion monitor D y0416 ftsY; cell division membrane protein K03110 ftsY; fused signal recognition particle receptor D y0074 secB; protein export; molecular chaperone K03071 secB; preprotein translocase subunit SecB D y0892 ffh; GTP-binding export factor K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D y0452 hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA D y0453 hypothetical protein K03117 tatB; sec-independent protein translocase protein TatB D y0454 hypothetical protein K03118 tatC; sec-independent protein translocase protein TatC D y1170 hypothetical protein K03425 tatE; sec-independent protein translocase protein TatE D y2268 putative hemolysin activator protein K11017 shlB; hemolysin activation/secretion protein D y0021 hylA; hemolysin precursor K11016 shlA; hemolysin D y2267 putative hemolysin K11016 shlA; hemolysin D y2786 putative outer membrane protein K12342 yadB_C; adhesin YadB/C D y2785 hypothetical protein K12342 yadB_C; adhesin YadB/C D y3430 hypothetical K11904 vgrG; type VI secretion system secreted protein VgrG D y2698 hypothetical K11904 vgrG; type VI secretion system secreted protein VgrG D y3361 hypothetical K11904 vgrG; type VI secretion system secreted protein VgrG D y1555 hypothetical K11904 vgrG; type VI secretion system secreted protein VgrG D y0257 VgrG-like protein K11904 vgrG; type VI secretion system secreted protein VgrG D y0268 VgrG-like protein K11904 vgrG; type VI secretion system secreted protein VgrG D y3668 hypothetical K11904 vgrG; type VI secretion system secreted protein VgrG D y0036 hemolysin co-regulated protein K11903 hcp; type VI secretion system secreted protein Hcp D y1547 hypothetical K11903 hcp; type VI secretion system secreted protein Hcp D y2700 hypothetical K11903 hcp; type VI secretion system secreted protein Hcp D y3673 hypothetical K11903 hcp; type VI secretion system secreted protein Hcp D y3363 hypothetical K11903 hcp; type VI secretion system secreted protein Hcp D y0278 hypothetical K11906 vasD; type VI secretion system protein VasD D y2682 hypothetical K11906 vasD; type VI secretion system protein VasD D y1548 hypothetical K11906 vasD; type VI secretion system protein VasD D y3661 hypothetical K11906 vasD; type VI secretion system protein VasD D y1553 hypothetical K11891 impL; type VI secretion system protein ImpL D y2688 hypothetical K11891 impL; type VI secretion system protein ImpL D y3658 hypothetical K11891 impL; type VI secretion system protein ImpL D y0276 putative membrane protein K11892 impK; type VI secretion system protein ImpK D y2703 hypothetical K11892 impK; type VI secretion system protein ImpK D y3366 hypothetical K11892 impK; type VI secretion system protein ImpK D y3659 hypothetical K11892 impK; type VI secretion system protein ImpK D y2699 clpB; heat shock protein K11907 vasG; type VI secretion system protein VasG D y1538 putative Clp ATPase K11907 vasG; type VI secretion system protein VasG D y0275 clpB; heat shock protein K11907 vasG; type VI secretion system protein VasG D y3669 putative ATP-dependent protease K11907 vasG; type VI secretion system protein VasG D y3362 clpB; putative protease K11907 vasG; type VI secretion system protein VasG B B 09132 Signal transduction C 02020 Two-component system [PATH:ypk02020] D y0979 phoR; positive and negative sensor protein for pho regulon K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D y0978 phoB; positive response regulator for pho regulon K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D y2130 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D y4131 pstS; periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D y0980 putative solute-binding periplasmic protein for ABC transport system K02040 pstS; phosphate transport system substrate-binding protein D y1793 phoQ; sensor protein PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D y1794 phoP; transcriptional regulatory protein K07660 phoP; two-component system, OmpR family, response regulator PhoP D y3917 envZ; protein histidine kinase/phosphatase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D y3916 ompR; response regulator (sensor, EnvZ) K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D y2966 ompC; outer membrane protein 1b (Ib;c) K09475 ompC; outer membrane pore protein C D y2759 putative outer membrane porin K09476 ompF; outer membrane pore protein F D y0069 cpxA; probable sensor protein, histidine protein kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D y0067 cpxR; transcriptional regulator in 2-component system K07662 cpxR; two-component system, OmpR family, response regulator CpxR D y3606 hypothetical K25864 mzrA; modulator protein MzrA D y2140 rstB; sensor histidine protein kinase (RstA regulator) K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3] D y2139 rstA; response transcriptional regulatory protein (RstB sensor) K07661 rstA; two-component system, OmpR family, response regulator RstA D y0807 htrA; periplasmic serine protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D y3279 creC; catabolite repression sensor kinase for PhoB K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3] D y3280 creB; catabolic regulation response regulator K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB D y1381 baeR; transcriptional response regulatory protein (sensor BaeS) K07664 baeR; two-component system, OmpR family, response regulator BaeR D y1386 putative membrane protein K07799 mdtA; membrane fusion protein, multidrug efflux system D y1385 hypothetical protein K07788 mdtB; multidrug efflux pump D y1384 hypothetical protein K07789 mdtC; multidrug efflux pump D y1383 putative permease, major facilitator superfamily K18326 mdtD; MFS transporter, DHA2 family, multidrug resistance protein D y1439 acrD; putative efflux pump K18324 acrD; multidrug efflux pump D y0676 basS; sensor protein for basR K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3] D y0677 basR; transcriptional regulatory protein, member of 2-component regulatory system K07771 basR; two-component system, OmpR family, response regulator BasR D y1917 putative enzyme K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87] D y2308 putative hisitidine protein kinase sensor K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D y2307 putative 2-component transcriptional regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D y1822 flhC; regulator of flagellar biosynthesis K02402 flhC; flagellar transcriptional activator FlhC D y3441 lateral flagellin K02406 fliC; flagellin D y2465 putative flagellin K02406 fliC; flagellin D y2464 fliA; alternative sigma factor 28 K02405 fliA; RNA polymerase sigma factor FliA D y1823 motA; proton conductor component of motor K02556 motA; chemotaxis protein MotA D y1262 kdpD; sensor for high-affinity potassium transport system K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D y1261 kdpE; regulator of kdp operon (transcriptional effector) K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D y1265 kdpA; ATPase of high-affinity potassium transport system, A chain K01546 kdpA; potassium-transporting ATPase potassium-binding subunit D y1264 kdpB; ATPase of high-affinity potassium transport system, B chain K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6] D y1263 kdpC; ATPase of high-affinity potassium transport system, C-chain K01548 kdpC; potassium-transporting ATPase KdpC subunit D y1266 hypothetical K01545 kdpF; potassium-transporting ATPase KdpF subunit D y0126 arcB; aerobic respiration sensor-response protein; histidine protein kinase/phosphatase K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3] D y3721 arcA; negative response regulator of genes in aerobic pathways, sensors, ArcB and CpxA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA D y4113 dnaA; DNA biosynthesis protein K02313 dnaA; chromosomal replication initiator protein D y0901 putative anaerobic c4-dicarboxylate transport protein K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB D y2658 sfcA; NAD-linked malate dehydrogenase (malic enzyme) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D y2351 narX; nitrate/nitrite sensor K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] D y1441 narP; nitrate/nitrite response regulator K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP D y0617 frdA; fumarate reductase, anaerobic, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D y0616 frdB; fumarate reductase, anaerobic, iron-sulfur protein subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D y0615 frdC; fumarate reductase, anaerobic, membrane anchor polypeptide K00246 frdC; succinate dehydrogenase subunit C D y0614 frdD; fumarate reductase, anaerobic, membrane anchor polypeptide K00247 frdD; succinate dehydrogenase subunit D D y3821 uhpC; regulator of uhpT K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC D y3820 uhpB; sensor protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D y4032 hypothetical K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D y4033 uhpA; response regulator K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA D y2588 uhpA; response regulator K20264 fusR; two-component system, NarL family, response regulator FusR D y3107 rcsF; colanic acid synthesis regulator K06080 rcsF; RcsF protein D y2971 rcsC; sensor for ctr capsule biosynthesis K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3] D y2969 hypothetical K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3] D y2968 putative 2-component sensor protein K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3] D y2970 rcsB; positive response regulator for colanic capsule biosynthesis K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D y0808 barA; sensor-regulator, activates OmpR by phophorylation K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D y2443 uvrY; putative 2-component transcriptional regulator K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D y0884 csrA; carbon storage regulator K03563 csrA; carbon storage regulator D y2387 putative Histidine protein kinase sensor K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D y2386 fimZ; fimbrial Z protein; probable signal transducer K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ D y1861 hypothetical K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D y1857 hypothetical K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D y1860 hypothetical K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D y1862 hypothetical K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D y0351 chaperone K07346 fimC; fimbrial chaperone protein D y1873 putative pilin chaperone K07346 fimC; fimbrial chaperone protein D y1859 putative pilus assembly chaperone K07346 fimC; fimbrial chaperone protein D y1858 hypothetical K07347 fimD; outer membrane usher protein D y0350 fimD; outer membrane usher protein FIMD precursor K07347 fimD; outer membrane usher protein D y1871 putative usher protein K07347 fimD; outer membrane usher protein D y2880 psaC; outer membrane usher protein K07347 fimD; outer membrane usher protein D y2390 putative outer membrane usher protein K07347 fimD; outer membrane usher protein D caf1A.pl caf1A; F1 capsule K07347 fimD; outer membrane usher protein D y3483 hypothetical K02279 cpaB; pilus assembly protein CpaB D y3484 hypothetical K02280 cpaC; pilus assembly protein CpaC D y3486 hypothetical K02282 cpaE; pilus assembly protein CpaE D y3487 tadA; putative secretion NTP hydrolase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D y3488 hypothetical K12510 tadB; tight adherence protein B D y3489 hypothetical K12511 tadC; tight adherence protein C D y3139 glnD; protein PII K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D y1317 glnB; regulatory protein P-II for glutamine synthetase K04751 glnB; nitrogen regulatory protein P-II 1 D y3805 glnL; histidine protein kinase sensor for GlnG regulator K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D y3806 glnG; response regulator for gln (sensor glnL) (nitrogen regulator I, NRI) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D y3804 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D y3836 dctA; C4-dicarboxylic acids symporter K11103 dctA; aerobic C4-dicarboxylate transport protein D y0154 rpoN; RNA polymerase, sigma(54 or 60) factor K03092 rpoN; RNA polymerase sigma-54 factor D y1313 putative 2-component sensor protein K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3] D y1315 putative 2-component transcriptional regulator K07715 glrR; two-component system, NtrC family, response regulator GlrR D y1839 cheR; protein glutamate methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D y2958 putative methyl-accepting chemotaxis transmembrane protein K03406 mcp; methyl-accepting chemotaxis protein D y1672 putative chemotaxis methyl-accepting transducer K03406 mcp; methyl-accepting chemotaxis protein D y1837 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D y3190 putative methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D y4081 tsr; methyl-accepting chemotaxis protein II K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor D y1838 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor D y1805 aer; aerotaxis sensor receptor, flavoprotein K03776 aer; aerotaxis receptor D y1828 cheW; positive regulator of CheA protein activity K03408 cheW; purine-binding chemotaxis protein CheW D y1827 cheA; sensory transducer kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D y1842 cheY; chemotaxis regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D y1841 cheB; protein methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D y0513 putative response regulator K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA D y0512 response regulator/transcription activator K14979 ssrB; two-component system, LuxR family, secretion system response regulator SsrB D y1186 gltL; ATP-binding protein of glutamate/aspartate transport system K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D y1187 gltK; glutamate/aspartate inner membrane permease K10002 gltK; glutamate/aspartate transport system permease protein D y1188 gltJ; glutamate/aspartate ABC transport system inner membrane permease K10003 gltJ; glutamate/aspartate transport system permease protein D y1189 gltI; solute-binding periplasmic protein of glutamate/aspartate ABC transporter K10001 gltI; glutamate/aspartate transport system substrate-binding protein D y3956 crp; cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D y3336 putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D y2372 putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D y3063 cydA; cytochrome d terminal oxidase, polypeptide subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D y3062 cydB; cytochrome d terminal oxidase, polypeptide subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D y3061 hypothetical K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D y2090 putative N-terminal fragment of inner membrane permease K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB D y2093 putative inner membrane permease K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE D y3516 hasF; outer membrane channel protein K12340 tolC; outer membrane protein D y0364 wecB; UDP-N-acetyl glucosamine -2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D y0365 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] D y3757 putative pectinesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] D y3458 hypothetical K02398 flgM; negative regulator of flagellin synthesis FlgM D y2513 flgM; anti-FliA factor K02398 flgM; negative regulator of flagellin synthesis FlgM C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis D y3347 speC; ornithine decarboxylase isozyme K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:ypk02024] D y0888 hypothetical protein K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D y0630 hfq; putative host factor I for bacteriophage Q beta replication K03666 hfq; host factor-I protein D y2051 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D y0903 aroF; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D y1928 aroH; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, tryptophan repressible) K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D y3049 aroG; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D y1313 putative 2-component sensor protein K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3] D y1315 putative 2-component transcriptional regulator K07715 glrR; two-component system, NtrC family, response regulator GlrR D y1822 flhC; regulator of flagellar biosynthesis K02402 flhC; flagellar transcriptional activator FlhC D y1261 kdpE; regulator of kdp operon (transcriptional effector) K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D y2588 uhpA; response regulator K20264 fusR; two-component system, NarL family, response regulator FusR D y3772 putative LACI-type transcriptional regulator K10555 lsrB; AI-2 transport system substrate-binding protein D y3770 putative ABC transport system permease protein K10556 lsrC; AI-2 transport system permease protein D y3771 putative ABC transport system permease protein K10557 lsrD; AI-2 transport system permease protein D y3769 putative ATP-binding component of a transport system K10558 lsrA; AI-2 transport system ATP-binding protein D y3764 putative kinase K11216 lsrK; autoinducer-2 kinase [EC:2.7.1.189] D y3765 putative transcriptional regulator, sorC family K11531 lsrR; lsr operon transcriptional repressor D y3773 hypothetical protein K08321 lsrF; 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase [EC:2.3.1.245] D y3774 hypothetical protein K11530 lsrG; (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase [EC:5.3.1.32] D y1658 hypothetical K20268 rhiA; rhizosphere induced protein D y1391 putative substrate-binding protein of ABC transporter K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D y2281 putative ABC transporter periplasmic binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D y1393 putative permease of ABC transporter K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D y2280 putative ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D y1392 putative permease of ABC transporter K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D y2279 putative ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D y1388 ATP hydrolase of ABC transporter K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D y0422 livK; high-affinity leucine-specificleucine-specific-binding periplasmic protein of high-affinity branched-chain amino acid ABC transporter transport system; periplasmic binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D y0423 livH; high-affinity branched-chain amino acid ABC transport system membrane permease K01997 livH; branched-chain amino acid transport system permease protein D y0424 livM; inner membrane permease of high-affinity branched-chain amino acid ABC transport system K01998 livM; branched-chain amino acid transport system permease protein D y0425 livG; ATP-binding component of high-affinity branched-chain amino acid ABC transport system K01995 livG; branched-chain amino acid transport system ATP-binding protein D y0426 livF; ATP-binding component of leucine transport K01996 livF; branched-chain amino acid transport system ATP-binding protein D y1733 ypeI; putative homoserine lactone synthase K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184] D y3374 ytbI; putative N-acylhomoserine lactone synthase K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184] D y1732 ypeR; putative transcriptional activator protein K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D y3375 ytbR; putative transcriptional activator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D y3834 pectate lyase K01728 pel; pectate lyase [EC:4.2.2.2] D y3641 putative fatty acid biosynthesis protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D y2236 fadD; acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D y3956 crp; cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D y0573 putative regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D y2064 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D y1000 ribD; bifunctional pyrimidine deaminase/reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D y0704 putative outer membrane protein, efflux pump K18139 oprM; outer membrane protein, multidrug efflux system D y2026 oppA; oligopeptide ABC transporter; periplasmic binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D y1993 putative transport periplasmic protein K15580 oppA; oligopeptide transport system substrate-binding protein D y2027 oppB; oligopeptide ABC transporter; permease protein K15581 oppB; oligopeptide transport system permease protein D y2028 oppC; oligopeptide ABC transporter; permease protein K15582 oppC; oligopeptide transport system permease protein D y2029 oppD; ATP-binding protein of oligopetide ABC transporter K15583 oppD; oligopeptide transport system ATP-binding protein D y2030 oppF; ATP-binding protein of oligopetide ABC transporter K10823 oppF; oligopeptide transport system ATP-binding protein D y1231 putative substrate-binding periplasmic protein of ABC transporter K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D y0737 putative transport system permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D y1232 putative permease of ABC transporter K02033 ABC.PE.P; peptide/nickel transport system permease protein D y0736 dppC; dipeptide transport system permease protein 2 K02034 ABC.PE.P1; peptide/nickel transport system permease protein D y1233 putative permease of ABC transporter K02034 ABC.PE.P1; peptide/nickel transport system permease protein D y0735 dppD; putative ATP-binding component of dipeptide transport system K02031 ddpD; peptide/nickel transport system ATP-binding protein D y1234 putative ATP-binding protein of ABC transport system K02031 ddpD; peptide/nickel transport system ATP-binding protein D y0734 dipeptide ABC transporter, ATP binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D y1235 putative ATP-binding protein of ABC transport system K02032 ddpF; peptide/nickel transport system ATP-binding protein D y4117 60 kDa inner-membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D y0478 secE; preprotein translocase K03073 secE; preprotein translocase subunit SecE D y0685 secG; protein export - membrane protein K03075 secG; preprotein translocase subunit SecG D y4010 prlA; putative ATPase subunit of translocase K03076 secY; preprotein translocase subunit SecY D y0992 hypothetical protein K03210 yajC; preprotein translocase subunit YajC D y3617 secA; preprotein translocase; secretion protein K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D y0416 ftsY; cell division membrane protein K03110 ftsY; fused signal recognition particle receptor D y0074 secB; protein export; molecular chaperone K03071 secB; preprotein translocase subunit SecB D y0892 ffh; GTP-binding export factor K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:ypk02030] D y2958 putative methyl-accepting chemotaxis transmembrane protein K03406 mcp; methyl-accepting chemotaxis protein D y1672 putative chemotaxis methyl-accepting transducer K03406 mcp; methyl-accepting chemotaxis protein D y1837 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D y3190 putative methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D y4081 tsr; methyl-accepting chemotaxis protein II K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor D y1838 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor D y1805 aer; aerotaxis sensor receptor, flavoprotein K03776 aer; aerotaxis receptor D y0028 malE; periplasmic maltose-binding protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein D y1687 putative solute binding protein of ABC transporter K10439 rbsB; ribose transport system substrate-binding protein D y3346 periplasmic binding protein for ABC transporter K10439 rbsB; ribose transport system substrate-binding protein D y3867 D-ribose-binding periplasmic protein of ABC transporter K10439 rbsB; ribose transport system substrate-binding protein D y2662 mglB; periplasmic D-galactose-binding ABC transport protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D y3825 dppA; periplasmic dipeptide transport protein of ABC transporter K12368 dppA; dipeptide transport system substrate-binding protein D y1827 cheA; sensory transducer kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D y1828 cheW; positive regulator of CheA protein activity K03408 cheW; purine-binding chemotaxis protein CheW D y1842 cheY; chemotaxis regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D y1843 cheZ; chemotactic response; CheY protein phophatase K03414 cheZ; chemotaxis protein CheZ D y1841 cheB; protein methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D y1839 cheR; protein glutamate methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D y3463 hypothetical K02410 fliG; flagellar motor switch protein FliG D y2477 fliG; flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG D y3467 hypothetical K02416 fliM; flagellar motor switch protein FliM D y2483 fliM; flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM D y3468 hypothetical K02417 fliN; flagellar motor switch protein FliN D y2484 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN D y1823 motA; proton conductor component of motor K02556 motA; chemotaxis protein MotA D y1826 motB; lateral flagellar motor protein K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:ypk02040] D y3465 hypothetical K02408 fliE; flagellar hook-basal body complex protein FliE D y2475 fliE; basal-body component K02408 fliE; flagellar hook-basal body complex protein FliE D y3464 fliF; putative flagellar M ring protein K02409 fliF; flagellar M-ring protein FliF D y2476 fliF; basal-body MS (membrane and supramembrane)-ring and collar protein K02409 fliF; flagellar M-ring protein FliF D y3463 hypothetical K02410 fliG; flagellar motor switch protein FliG D y2477 fliG; flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG D y3462 hypothetical K02411 fliH; flagellar assembly protein FliH D y2478 fliH; flagellar assembly protein K02411 fliH; flagellar assembly protein FliH D y3461 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D y2479 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D y2480 fliJ; flagellar fliJ protein K02413 fliJ; flagellar protein FliJ D y2481 fliK; flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D y2482 fliL; flagellar biosynthesis K02415 fliL; flagellar protein FliL D y3467 hypothetical K02416 fliM; flagellar motor switch protein FliM D y2483 fliM; flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM D y3468 hypothetical K02417 fliN; flagellar motor switch protein FliN D y2484 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN D y2485 fliO; flagellar biosynthesis protein K02418 fliO; flagellar protein FliO/FliZ D y3469 fliP; flagellar biosynthesis protein K02419 fliP; flagellar biosynthesis protein FliP D y2486 fliP; flagellar biosynthesis protein K02419 fliP; flagellar biosynthesis protein FliP D y3470 hypothetical K02420 fliQ; flagellar biosynthesis protein FliQ D y2487 fliQ; flagellar biosynthesis protein K02420 fliQ; flagellar biosynthesis protein FliQ D y3471 fliR; putative flagellar biosynthetic protein K02421 fliR; flagellar biosynthesis protein FliR D y2488 fliR; flagellar biosynthesis protein K02421 fliR; flagellar biosynthesis protein FliR D y2517 flhE; flagellar protein K03516 flhE; flagellar protein FlhE D y2518 flhA; flagellar biosynthesis protein K02400 flhA; flagellar biosynthesis protein FlhA D y3472 flhB; putative flagellar biosynthetic protein K02401 flhB; flagellar biosynthesis protein FlhB D y2519 flhB; flagellar biosynthesis protein K02401 flhB; flagellar biosynthesis protein FlhB D y3457 lfgA; putative flagellar protein K02386 flgA; flagellar basal body P-ring formation protein FlgA D y2511 flgA; putative flagella basal body P-ring formation protein K02386 flgA; flagellar basal body P-ring formation protein FlgA D y3456 lfgB; putative flagellar rod protein K02387 flgB; flagellar basal-body rod protein FlgB D y2510 flgB; cell-proximal portion of basal-body rod protein K02387 flgB; flagellar basal-body rod protein FlgB D y3455 flgC; flagellar biosynthesis protein, cell-proximal portion of basal-body rod K02388 flgC; flagellar basal-body rod protein FlgC D y2509 flgC; cell-proximal portion of basal-body rod protein K02388 flgC; flagellar basal-body rod protein FlgC D y3453 lfgD; putative flagellar assembly protein K02389 flgD; flagellar basal-body rod modification protein FlgD D y2508 flgD; basal-body rod modification protein K02389 flgD; flagellar basal-body rod modification protein FlgD D y3452 flgE; putative flagellar hook protein K02390 flgE; flagellar hook protein FlgE D y2507 flgE; hook protein K02390 flgE; flagellar hook protein FlgE D y3451 flgF; putative flagellar rod protein K02391 flgF; flagellar basal-body rod protein FlgF D y2506 flgF; cell-proximal portion of basal-body rod protein K02391 flgF; flagellar basal-body rod protein FlgF D y3450 flgG; flagellar biosynthesis protein, cell-distal portion of basal-body rod K02392 flgG; flagellar basal-body rod protein FlgG D y2505 flgG; cell-distal portion of basal-body rod K02392 flgG; flagellar basal-body rod protein FlgG D y3449 flgH; putative flagellar l-ring protein K02393 flgH; flagellar L-ring protein FlgH D y2504 flgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein K02393 flgH; flagellar L-ring protein FlgH D y3448 flgI; putative flagella basal body protein K02394 flgI; flagellar P-ring protein FlgI D y2503 flgI; homolog of Salmonella P-ring of flagella basal body K02394 flgI; flagellar P-ring protein FlgI D y3447 hypothetical K02395 flgJ; peptidoglycan hydrolase FlgJ D y2502 flgJ; flagellar biosynthesis protein K02395 flgJ; peptidoglycan hydrolase FlgJ D y3446 hap1; putative flagellar hook-associated protein K02396 flgK; flagellar hook-associated protein 1 D y2501 flgK; flagellar biosynthesis protein, hook-filament junction protein 1 K02396 flgK; flagellar hook-associated protein 1 D y3445 hypothetical K02397 flgL; flagellar hook-associated protein 3 FlgL D y2499 flgL; flagellar biosynthesis protein, hook-filament junction protein K02397 flgL; flagellar hook-associated protein 3 FlgL D y3441 lateral flagellin K02406 fliC; flagellin D y2465 putative flagellin K02406 fliC; flagellin D y2466 fliD; filament capping protein K02407 fliD; flagellar hook-associated protein 2 D y2467 fliS; repressor of class 3a and 3b operons (RflA activity) K02422 fliS; flagellar secretion chaperone FliS D y2468 fliT; repressor of class 3a and 3b operons (RflA activity) K02423 fliT; flagellar protein FliT D y1823 motA; proton conductor component of motor K02556 motA; chemotaxis protein MotA D y1826 motB; lateral flagellar motor protein K02557 motB; chemotaxis protein MotB D y3458 hypothetical K02398 flgM; negative regulator of flagellin synthesis FlgM D y2513 flgM; anti-FliA factor K02398 flgM; negative regulator of flagellin synthesis FlgM D y2514 flgN; flagellar biosynthesis protein K02399 flgN; flagellar biosynthesis protein FlgN D y3459 hypothetical K02399 flgN; flagellar biosynthesis protein FlgN D y2460 fliY; putative periplasmic cysteine-binding ABC transport protein K02424 tcyA; L-cystine transport system substrate-binding protein D y2463 fliZ; hypothetical protein K02425 fliZ; regulator of sigma S factor FliZ D y3537 rpoD; RNA polymerase, sigma(70) factor K03086 rpoD; RNA polymerase primary sigma factor D y1822 flhC; regulator of flagellar biosynthesis K02402 flhC; flagellar transcriptional activator FlhC D y0154 rpoN; RNA polymerase, sigma(54 or 60) factor K03092 rpoN; RNA polymerase sigma-54 factor D y2464 fliA; alternative sigma factor 28 K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D y0814 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism D y0020 metH; B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase, repressor of metE and metF K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection D y3884 hypothetical K13735 yeeJ; adhesin/invasin C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells D y3884 hypothetical K13735 yeeJ; adhesin/invasin B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:ypk01501] D y2759 putative outer membrane porin K09476 ompF; outer membrane pore protein F D y2966 ompC; outer membrane protein 1b (Ib;c) K09475 ompC; outer membrane pore protein C D y1023 ampG; ampG protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D y1775 hypothetical protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D y2026 oppA; oligopeptide ABC transporter; periplasmic binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D y1993 putative transport periplasmic protein K15580 oppA; oligopeptide transport system substrate-binding protein D y2027 oppB; oligopeptide ABC transporter; permease protein K15581 oppB; oligopeptide transport system permease protein D y2028 oppC; oligopeptide ABC transporter; permease protein K15582 oppC; oligopeptide transport system permease protein D y2029 oppD; ATP-binding protein of oligopetide ABC transporter K15583 oppD; oligopeptide transport system ATP-binding protein D y2030 oppF; ATP-binding protein of oligopetide ABC transporter K10823 oppF; oligopeptide transport system ATP-binding protein D y0702 acrA; acridine efflux pump K03585 acrA; membrane fusion protein, multidrug efflux system D y1050 acrA; acridine efflux pump K03585 acrA; membrane fusion protein, multidrug efflux system D y1049 acrB; acridine efflux pump K18138 acrB; multidrug efflux pump D y0703 acrB; acridine efflux pump K18138 acrB; multidrug efflux pump D y3393 acrF; integral transmembrane protein K18138 acrB; multidrug efflux pump D y0704 putative outer membrane protein, efflux pump K18139 oprM; outer membrane protein, multidrug efflux system D y3516 hasF; outer membrane channel protein K12340 tolC; outer membrane protein D y3924 mrcA; peptidoglycan synthetase; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D y1178 mrdA; peptidoglycan synthetase, penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D y3632 ftsI; peptidoglycan synthetase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:ypk01502] D y3624 ddlB; D-alanine-D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D y0578 alr; alanine racemase 1 K01775 alr; alanine racemase [EC:5.1.1.1] D y3630 murF; D-alanine:D-alanine-adding enzyme K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D y3629 mraY; putative phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D y3626 murG; UDP-N-acetylglucosamine:N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:ypk01503] D y1793 phoQ; sensor protein PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D y1794 phoP; transcriptional regulatory protein K07660 phoP; two-component system, OmpR family, response regulator PhoP D y4034 hypothetical protein K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42] D y2563 crcA; hypothetical protein K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251] D y1917 putative enzyme K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87] D y1918 putative sugar transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53] D y1919 putative transformylase K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305] D y1920 hypothetical protein K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-] D y1921 hypothetical protein K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43] D y1922 hypothetical K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE D y1923 hypothetical K12963 arnF; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnF D y0676 basS; sensor protein for basR K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3] D y0677 basR; transcriptional regulatory protein, member of 2-component regulatory system K07771 basR; two-component system, OmpR family, response regulator BasR D y1960 hypothetical protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D y1977 sapA; peptide-binding periplasmic protein of peptide ABC transport system K19226 sapA; cationic peptide transport system substrate-binding protein D y1976 sapB; peptide ABC transport inner membrane permease protein K19227 sapB; cationic peptide transport system permease protein D y1975 sapC; homolog of Salmonella peptide transport permease protein K19228 sapC; cationic peptide transport system permease protein D y1974 sapD; putative ATP-binding protein of peptide ABC transport system K19229 sapD; cationic peptide transport system ATP-binding protein D y1973 sapF; putative ATP-binding protein of peptide ABC transport system K19230 sapF; cationic peptide transport system ATP-binding protein D y3857 putative secreted metalloprotease K01406 prtC; serralysin [EC:3.4.24.40] D y3110 cutF; copper homeostasis protein (lipoprotein) K06079 cutF; copper homeostasis protein (lipoprotein) D y0069 cpxA; probable sensor protein, histidine protein kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D y0067 cpxR; transcriptional regulator in 2-component system K07662 cpxR; two-component system, OmpR family, response regulator CpxR D y0627 amiB; N-acetylmuramoyl-l-alanine amidase II K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D y3161 putative amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D y1940 hypothetical protein K19236 ycfS; L,D-transpeptidase YcfS D y0807 htrA; periplasmic serine protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D y3812 dsbA; protein disulfide isomerase I K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D y3951 ppiA; peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D y0702 acrA; acridine efflux pump K03585 acrA; membrane fusion protein, multidrug efflux system D y1050 acrA; acridine efflux pump K03585 acrA; membrane fusion protein, multidrug efflux system D y1049 acrB; acridine efflux pump K18138 acrB; multidrug efflux pump D y0703 acrB; acridine efflux pump K18138 acrB; multidrug efflux pump D y3393 acrF; integral transmembrane protein K18138 acrB; multidrug efflux pump D y3516 hasF; outer membrane channel protein K12340 tolC; outer membrane protein D y3123 lpxA; UDP-N-acetylglucosamine acetyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:ypk01000] C 01001 Protein kinases [BR:ypk01001] D y2574 hypothetical K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D y0979 phoR; positive and negative sensor protein for pho regulon K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D y1793 phoQ; sensor protein PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D y3917 envZ; protein histidine kinase/phosphatase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D y2140 rstB; sensor histidine protein kinase (RstA regulator) K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3] D y0069 cpxA; probable sensor protein, histidine protein kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D y3279 creC; catabolite repression sensor kinase for PhoB K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3] D y0676 basS; sensor protein for basR K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3] D y2308 putative hisitidine protein kinase sensor K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D y1262 kdpD; sensor for high-affinity potassium transport system K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D y0126 arcB; aerobic respiration sensor-response protein; histidine protein kinase/phosphatase K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3] D y1483 putative kinase sensor protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D y2351 narX; nitrate/nitrite sensor K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] D y3820 uhpB; sensor protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D y4032 hypothetical K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D y2969 hypothetical K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3] D y2968 putative 2-component sensor protein K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3] D y2971 rcsC; sensor for ctr capsule biosynthesis K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3] D y0808 barA; sensor-regulator, activates OmpR by phophorylation K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D y2387 putative Histidine protein kinase sensor K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D y3885 putative 2-component sensor protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D y3805 glnL; histidine protein kinase sensor for GlnG regulator K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D y1313 putative 2-component sensor protein K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3] D y1827 cheA; sensory transducer kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D y0513 putative response regulator K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA C 01009 Protein phosphatases and associated proteins [BR:ypk01009] D y0059 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D y1064 htpG; chaperone Hsp90, heat shock protein C 62.5 K04079 HSP90A; molecular chaperone HtpG D y3738 serB; 3-phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:ypk01002] D y3699 lspA; prolipoprotein signal peptidase (SPase II) K03101 lspA; signal peptidase II [EC:3.4.23.36] D y3195 putative type IV prepilin peptidase K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-] D y3482 hypothetical K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D y1280 putative pyrrolidone-carboxylate peptidase K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3] D y1363 guaA; GMP synthetase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D y0286 putative secretion ATPase K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D y2908 spr; putative lipoprotein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13] D y1952 putative lipoprotein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-] D y1925 nlpC; lipoprotein K13695 nlpC; probable lipoprotein NlpC D y1605 purF; amidophosphoribosyltransferase; PRPP amidotransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D y0128 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D y4132 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D y1198 asnB; asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D y1013 thiJ; 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis enzyme K03152 thiJ; protein deglycase [EC:3.5.1.124] D y1940 hypothetical protein K19236 ycfS; L,D-transpeptidase YcfS D y2763 putative amidase K21470 ycbB; L,D-transpeptidase YcbB D y3373 hypothetical K07052 K07052; CAAX protease family protein D y3042 hypothetical K07052 K07052; CAAX protease family protein D y2756 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D y3855 prlC; oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70] D y3857 putative secreted metalloprotease K01406 prtC; serralysin [EC:3.4.24.40] D y0187 hypothetical phage protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-] D y3165 ptr; protease III K01407 ptrA; protease III [EC:3.4.24.55] D y3837 hypothetical protein K07263 pqqL; zinc protease [EC:3.4.24.-] D y0746 pepA; aminopeptidase A/I K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D y1342 pepB; putative peptidase K07751 pepB; PepB aminopeptidase [EC:3.4.11.23] D y1427 dapE; N-succinyl-diaminopimelate deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D y1791 pepT; putative peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D y3403 possible peptidase K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D y0960 pepD; aminoacyl-histidine dipeptidase (peptidase D) K01270 pepD; dipeptidase D [EC:3.4.13.-] D y0939 putative N-carbamyl-L-amino acid amidohydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9] D y2248 hypothetical protein K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-] D y0852 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D y3138 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D y0465 pepQ; proline dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9] D y3297 pepP; proline aminopeptidase P II K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D y2141 putative carboxypeptidase K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19] D y0682 hflB; integral membrane peptidase, cell division protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D y1868 htpX; heat shock protein, integral membrane protein K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D y3311 hypothetical protein K07387 K07387; metalloprotease [EC:3.4.24.-] D y1412 hypothetical protein K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-] D y3128 hypothetical protein K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D y1586 mepA; murein DD-endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-] D y2576 hypothetical protein K09933 mtfA; MtfA peptidase D y2013 hypothetical protein K04775 ydgD; protease YdgD [EC:3.4.21.-] D y0807 htrA; periplasmic serine protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D y0137 degQ; serine endoprotease K04772 degQ; serine protease DegQ [EC:3.4.21.-] D y0139 degS; protease K04691 hhoB; serine protease DegS [EC:3.4.21.-] D y2527 ptrB; protease II K01354 ptrB; oligopeptidase B [EC:3.4.21.83] D y2864 dacC; D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D y1175 dacA; D-alanyl-D-alanine carboxypeptidase, fraction A K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D y3013 pbpG; penicillin-binding protein 7 K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D y2964 putative enzyme K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-] D y0678 dacB; D-alanyl-D-alanine carboxypeptidase, fraction B K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D y1027 clpP; ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5 K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D y1029 lon; DNA-binding ATP-dependent protease La; heat shock K-protein K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D y2739 putative ATP-dependent protease K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-] D y0572 lexA; regulator for SOS(lexA) regulon K01356 lexA; repressor LexA [EC:3.4.21.88] D y1296 lepB; leader peptidase (signal peptidase I) K03100 lepB; signal peptidase I [EC:3.4.21.89] D y2526 putative proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D y1867 prc; carboxy-terminal protease for penicillin-binding protein 3 K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D y2160 sppA; protease IV, a signal peptide peptidase K04773 sppA; protease IV [EC:3.4.21.-] D y2057 sohB; putative protease K04774 sohB; serine protease SohB [EC:3.4.21.-] D y3898 glpG; protein of glp regulon K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105] D y0295 hslV; heat shock protein, proteasome-related peptidase subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D y0985 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D y0986 hypothetical K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D y1379 hypothetical protein K08303 prtC; U32 family peptidase [EC:3.4.-.-] D y0705 hypothetical protein K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV D y0706 putative collagenase K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU D y0171 pmbA; PmbA/TldD family protein K03592 pmbA; PmbA protein D y0193 tldD; PmbA/TldD family protein K03568 tldD; TldD protein D y2977 eco; ecotin, serine protease inhibitor K08276 eco; ecotin D y1143 conserved hypothetical protein K06894 yfhM; alpha-2-macroglobulin D y0634 hflC; putative protease specific for phage lambda cII repressor K04087 hflC; modulator of FtsH protease HflC D y0633 hflK; putative protease specific for phage lambda cII repressor K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:ypk01003] D y2328 hypothetical K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80] D y3889 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] D y0124 mtgA; putative peptidoglycan enzyme K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D y1141 putative penicillin-binding protein K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D y0795 mrcB; peptidoglycan synthetase; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D y3924 mrcA; peptidoglycan synthetase; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D y0373 wecG; probable UDP-N-acetyl-D-mannosaminuronic acid transferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180] D y0371 wecF; TDP-Fuc4NAc:lipid II Fuc4NAc transferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325] D y0362 rfe; UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D y2357 hmsR; hypothetical protein K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-] C 01005 Lipopolysaccharide biosynthesis proteins [BR:ypk01005] D y3123 lpxA; UDP-N-acetylglucosamine acetyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D y3122 lpxB; tetraacyldisaccharide-1-P sythetase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D y3620 lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D y3125 lpxD; UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D y1105 hypothetical protein K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D y2776 putative enzyme K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D y2247 msbB; suppressor of htrB, heat shock protein K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243] D y0236 ddg; putative heat shock protein K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242] D y2907 hypothetical protein K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29] D y0086 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D y1921 hypothetical protein K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43] D y2563 crcA; hypothetical protein K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251] D y1960 hypothetical protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D y4034 hypothetical protein K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42] D y2286 kdsA; 2-dehydro-3-deoxyphosphooctulonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D y2772 kdsB; CTP:CMP-3-deoxy-D-manno-octulosonate transferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D y0150 hypothetical protein K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D y0149 putative isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D y0085 rfaC; heptosyl transferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D y0087 lipopolysaccharide core biosynthesis glycosyl transferase K12984 waaE; (heptosyl)LPS beta-1,4-glucosyltransferase [EC:2.4.1.-] D y0084 rfaF; ADP-heptose--lps heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D y3763 rfaQ; lipopolysaccharide biosynthesis protein K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25] D y0947 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D y3103 putative phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D y3524 putative kinase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D y0083 rfaD; ADP-L-glycero-D-mannoheptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D y1075 putative glycosyltransferase K24673 wbyI; glycosyltransferase [EC:2.4.1.-] D y1076 putative mannosyltransferase protein K13000 wbyJ; mannosyltransferase [EC:2.4.1.-] D y1078 putative mannosyltransferase-like protein K13001 wbyK; mannosyltransferase [EC:2.4.1.-] D y1082 putative glycosyltransferase K13002 wbyL; glycosyltransferase [EC:2.4.1.-] D y0372 wecF; TDP-Fuc4NAc:lipidII transferase K02853 wzyE; enterobacterial common antigen polymerase [EC:2.4.99.27] D y0362 rfe; UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:ypk01011] D y0140 murA; UDP-N-glucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D y0471 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D y3625 murC; UDP-N-acetyl-muramate:alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D y3628 murD; UDP-N-acetylmuramoylalanine-D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D y3631 murE; meso-diaminopimelate-adding enzyme K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D y3624 ddlB; D-alanine-D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D y0578 alr; alanine racemase 1 K01775 alr; alanine racemase [EC:5.1.1.1] D y0326 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D y3629 mraY; putative phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D y3626 murG; UDP-N-acetylglucosamine:N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D y3530 bacA; bacitracin resistance protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D y2859 hypothetical protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D y2269 mviN; putative virulence factor K03980 murJ; putative peptidoglycan lipid II flippase D y3924 mrcA; peptidoglycan synthetase; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D y0795 mrcB; peptidoglycan synthetase; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D y1141 putative penicillin-binding protein K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D y1178 mrdA; peptidoglycan synthetase, penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D y3632 ftsI; peptidoglycan synthetase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D y2864 dacC; D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D y1175 dacA; D-alanyl-D-alanine carboxypeptidase, fraction A K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D y0678 dacB; D-alanyl-D-alanine carboxypeptidase, fraction B K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D y2964 putative enzyme K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-] D y3013 pbpG; penicillin-binding protein 7 K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D y0124 mtgA; putative peptidoglycan enzyme K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D y1940 hypothetical protein K19236 ycfS; L,D-transpeptidase YcfS D y2763 putative amidase K21470 ycbB; L,D-transpeptidase YcbB D y1586 mepA; murein DD-endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-] D y1952 putative lipoprotein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-] D y2908 spr; putative lipoprotein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13] D y2248 hypothetical protein K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-] D y0187 hypothetical phage protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-] D y3727 slt; soluble lytic murein transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D y3159 mltA; membrane-bound lytic murein transglycosylase A K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29] D y1527 mltB; membrane-bound lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D y2230 putative transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D y3341 mltC; membrane-bound lytic murein transglycosylase C K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29] D y3098 dniR; transcriptional regulator for nitrite reductase (cytochrome c552) K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D y1898 mltE; murein transglycosylase E K08308 mltE; peptidoglycan lytic transglycosylase E [EC:4.2.2.29] D y1308 putative periplasmic binding transport protein K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29] D y1763 putative thymidylate kinase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D y1176 rlpA; rlpA lipoprotein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D y0627 amiB; N-acetylmuramoyl-l-alanine amidase II K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D y3161 putative amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D y1877 putative regulator K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D y0763 ampD; regulates ampC K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:ypk01004] D y1757 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D y2707 putative acyl transferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D y2334 hypothetical K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D y2335 hypothetical K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D y1756 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D y2714 fabF; putative beta-ketoacyl-acp synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D y1591 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D y1760 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D y2744 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D y2713 fabG; putative 3-ketoacyl-acyl carrier protein reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D y1758 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D y2740 fabA; beta-hydroxydecanoyl thioester dehydrase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D y2715 fabZ; putative myristoyl-acyl carrier dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D y3124 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D y4119 hypothetical K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D y1099 tesA; acyl-CoA thioesterase I K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D y1043 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D y2039 hypothetical protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] D y1033 hypothetical protein K12500 tesC; thioesterase III [EC:3.1.2.-] D y2400 irp1; HMWP1 nonribosomal peptide/polyketide synthase K04786 irp1; yersiniabactin nonribosomal peptide/polyketide synthase D y2399 irp2; HMWP2 nonribosomal peptide synthetase K04784 irp2; yersiniabactin nonribosomal peptide synthetase D y0510 acs; acetyl CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D y3641 putative fatty acid biosynthesis protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D y2236 fadD; acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D y0570 plsB; glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D y1755 plsX; fatty acid/phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D y3532 hypothetical protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D y3506 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:ypk01008] D y2584 ybtD; yersiniabactin biosynthesis component K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-] D y2400 irp1; HMWP1 nonribosomal peptide/polyketide synthase K04786 irp1; yersiniabactin nonribosomal peptide/polyketide synthase D y2399 irp2; HMWP2 nonribosomal peptide synthetase K04784 irp2; yersiniabactin nonribosomal peptide synthetase D y2403 ybtE; salicyl-AMP ligase K04783 irp5; yersiniabactin salicyl-AMP ligase [EC:6.3.2.-] D y2401 ybtU; thiazolinyl-S-HMWP1 reductase K04785 irp3; yersiniabactin synthetase, thiazolinyl reductase component D y3419 hypothetical K12241 pchG; pyochelin biosynthesis protein PchG D y2402 ybtT; yersiniabactin thioesterase K05374 irp4; yersiniabactin synthetase, thioesterase component C 01006 Prenyltransferases [BR:ypk01006] D y1009 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D y0671 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D y3130 hypothetical protein K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D y0629 miaA; delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D y0293 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D y0569 ubiA; 4-hydroxybenzoate-octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D y1018 cyoE; protoheme IX farnesyltransferase (haeme O biosynthesis) K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:ypk01007] D y1498 gltX; glutamate tRNA synthetase, catalytic subunit K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D y1205 glnS; glutamine tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D y0789 putative tRNA synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D y1966 tyrS; tyrosine tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D y3940 trpS; tryptophan tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D y1107 cysS; cysteine tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D y2266 argS; arginine tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D y2648 metG; methionine tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D y3700 ileS; isoleucine tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D y0743 valS; valine tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D y1184 leuS; leucine tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D y3272 lysS; lysine tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D y2258 aspS; aspartate tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D y2758 asnS; asparagine tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D y1354 hisS; histidine tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D y4090 glyQ; glycine tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D y4089 glyS; glycine tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D y2796 serS; serine tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D y3109 proS; proline tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D y1903 thrS; threonine tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D y0883 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D y1908 pheS; phenylalanine tRNA synthetase, alpha-subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D y1909 pheT; phenylalanine tRNA synthetase, beta-subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D y2760 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D y4099 avtA; alanine-alpha-ketoisovalerate K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66] D y1628 putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D y1507 putative aminotransferase K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-] D y0579 tyrB; tyrosine aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D y2622 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D y0081 kbl; 2-amino-3-ketobutyrate CoA ligase (glycine acetyltransferase) K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D y3030 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D y1475 putative aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D y3954 argD; acetylornithine delta-aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D y2349 cstC; acetylornithine delta-aminotransferase K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81] D y1390 goaG; 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D y3032 bioA; 7,8-diaminopelargonic acid synthetase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D y0799 hemL; glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D y0337 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D y2784 serC; 3-phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D y1917 putative enzyme K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87] D y0369 wecE; putative regulator K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:ypk00194] D y4134 atpC; membrane-bound ATP synthase, F1 sector, epsilon-subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D y4135 atpD; membrane-bound ATP synthase, F1 sector, beta-subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D y4136 atpG; membrane-bound ATP synthase, F1 sector, gamma-subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D y4137 atpA; membrane-bound ATP synthase, F1 sector, alpha-subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D y4138 atpH; membrane-bound ATP synthase, F1 sector, delta-subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D y4139 atpF; membrane-bound ATP synthase, F0 sector, subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b D y4140 atpE; membrane-bound ATP synthase, F0 sector, subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c D y4141 atpB; membrane-bound ATP synthase, F0 sector, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a D y4142 atpI; membrane-bound ATP synthase K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:ypk03000] D y2100 araC; transcriptional regulator for ara operon K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein D y0591 rhaR; positive regulator for rhaRS operon K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR D y0590 rhaS; positive regulator for rhaBAD operon K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS D y1254 celD; negative transcriptional regulator of cel operon K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon D y2398 ybtA; AraC-type transcriptional regulator for yersiniabactin uptake and biosynthetic genes K05372 ybtA; AraC family transcriptional regulator D y3723 rob; right origin-binding protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D y0070 ada; O6-methylguanine-DNA methyltransferase; transcription activator/repressor K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D y3154 gcvA; positive regulator of gcv operon K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D y0344 ilvY; positive regulator for ilvC K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D y0441 metR; regulator for metE and metH K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D y3703 nhaR; transcriptional activator of nhaA K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D y0320 oxyR; activator, hydrogen peroxide-inducible genes K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D y3303 iciA; replication initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D y3642 leuO; probable transcriptional activator for leuABCD operon K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon D y2061 cysB; positive transcriptional regulator for cysteine regulon K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D y1691 putative transcriptional regulator LYSR-type K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D y0053 putative transcriptional regulator K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway D y0180 putative transcriptional regulator LYSR-type K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon D y0332 hypothetical protein K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator D y2861 deoR; transcriptional repressor for deo operon, tsx, nupG K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D y3897 glpR; repressor of the glp operon K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D y3216 agaR; putative DEOR-type transcriptional regulator of aga operon K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor D y0862 transcriptional regulator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator D y3234 lacI; transcriptional repressor of the lac operon K27069 lacI; LacI family transcriptional regulator, lactose operon repressor D y4053 xylR; putative regulator of xyl operon K02529 galR; LacI family transcriptional regulator, galactose operon repressor D y2113 galR; repressor of galETK operon K02529 galR; LacI family transcriptional regulator, galactose operon repressor D y3436 cytR; putative transcription repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D y3183 galR; repressor of galETK operon K02529 galR; LacI family transcriptional regulator, galactose operon repressor D y2579 putative transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D y3567 putative repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D y1690 putative transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D y0297 cytR; regulator for deo operon, udp, cdd, tsx, nupC, and nupG K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D y3637 fruR; transcriptional repressor of fru operon and others K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D y0165 treR; repressor of treA,B,C K03485 treR; LacI family transcriptional regulator, trehalose operon repressor D y1950 purR; transcriptional repressor for pur regulon, glyA, glnB, prsA, speA K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D y3873 gntR; regulator of gluconate (gnt) operon K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D y0730 phnF; putative transcriptional regulator K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D y2339 putative repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D y2419 putative transcriptional regulator of the GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D y2177 fadR; negative regulator for fad regulon, and positive activator of fabA K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D y0766 pdhR; transcriptional regulator for pyruvate dehydrogenase complex K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D y2904 uxuR; regulator for uxu operon K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor D y3602 exuR; negative regulator of exu regulon, exuT, uxaAC, and uxuB K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor D y1389 putative transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D y1051 acrR; acrAB operon repressor K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D y0095 ttk; putative transcriptional regulator K05501 slmA; TetR/AcrR family transcriptional regulator D y1959 hypothetical protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D y0322 hypothetical protein K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D y0002 asnC; regulator for asnA, asnC and gidA K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D y2801 lrp; regulator protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D y1813 putative regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D y1038 putative LRP-like transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D y1732 ypeR; putative transcriptional activator protein K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D y3375 ytbR; putative transcriptional activator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D y3900 malT; positive regulator of mal regulon K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D y1961 slyA; transcriptional regulator for cryptic hemolysin K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D y0923 emrR; regulator of plasmid mcrB operon (microcin B17 synthesis) K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB D y1094 putative transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D y4017 putative transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D y1208 fur; negative regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D y0573 putative regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D y0019 iclR; repressor of aceBA operon K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D y1876 putative regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D y3956 crp; cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D y2132 fnr; transcriptional regulation of aerobic, anaerobic respiration and osmotic balance K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D y1333 hypothetical protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D y0636 hypothetical protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D y0845 arsR; transcriptional repressor of chromosomal ars operon K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D y2245 hypothetical protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D y0472 birA; biotin-[acetyl CoA carboxylase] holoenzyme synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D y0214 fis; site-specific DNA inversion stimulation factor K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D y3726 trpR; regulator for trp operon and aroH; trp aporepressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D y0669 putative regulator for maltose metabolism K07724 ner; Ner family transcriptional regulator D y1140 putative regulator K07724 ner; Ner family transcriptional regulator D y3650 solute-binding periplasmic protein of ABC transporter K11925 sgrR; SgrR family transcriptional regulator D y3266 hypothetical protein K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA D y3851 conserved hypothetical protein K02647 cdaR; carbohydrate diacid regulator D y3040 modE; repressor of molybdate ABC transporter genes K02019 modE; molybdate transport system regulatory protein D y0301 metJ; repressor of all met genes but metF K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D y2455 putA; proline dehydrogenase, P5C dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D y1025 bolA; possible regulator of murein genes K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D Y1092.pl unknown K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D parB.pl parB; partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D y0460 rfaH; transcriptional activator K05785 rfaH; transcriptional antiterminator RfaH D y0667 argR; repressor of arg regulon K03402 argR; transcriptional regulator of arginine metabolism D y1200 nagC; transcriptional repressor of nag (N-acetylglucosamine) operon K02565 nagC; N-acetylglucosamine repressor D y2110 mlc; putative NAGC-like transcriptional regulator K15545 mlc; transcriptional regulator of PTS gene D y4085 mtlR; repressor for mtl K02562 mtlR; mannitol operon repressor D y1988 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D y1979 pspF; psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator D y1982 pspC; phage shock protein K03973 pspC; phage shock protein C D y3765 putative transcriptional regulator, sorC family K11531 lsrR; lsr operon transcriptional repressor D y0168 rnk; regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase D y3260 hypothetical K07733 alpA; prophage regulatory protein D y3322 hypothetical protein K07735 algH; putative transcriptional regulator D y0790 dksA; dnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D y0999 hypothetical protein K07738 nrdR; transcriptional repressor NrdR D y0965 crl; transcriptional regulator of cryptic csgA gene for curli surface fibers K11926 crl; sigma factor-binding protein Crl D y3635 hypothetical protein K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:ypk03021] D y4015 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D y0484 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D y0485 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D y0102 rpoZ; RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D y3537 rpoD; RNA polymerase, sigma(70) factor K03086 rpoD; RNA polymerase primary sigma factor D y0834 rpoS; RNA polymerase, sigma S (sigma38) factor K03087 rpoS; RNA polymerase nonessential primary-like sigma factor D y1290 rpoE; RNA polymerase, sigma-E factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D y0419 rpoH; RNA polymerase, sigma(32) factor K03089 rpoH; RNA polymerase sigma-32 factor D y0154 rpoN; RNA polymerase, sigma(54 or 60) factor K03092 rpoN; RNA polymerase sigma-54 factor D y2464 fliA; alternative sigma factor 28 K02405 fliA; RNA polymerase sigma factor FliA D y3656 hepA; probable ATP-dependent RNA helicase K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-] D y0687 nusA; transcription pausing L factor K02600 nusA; transcription termination/antitermination protein NusA D y1002 nusB; transcription termination; L factor K03625 nusB; transcription antitermination protein NusB D y0479 nusG; component in transcription antitermination K02601 nusG; transcription termination/antitermination protein NusG D y0132 sspA; regulator of transcription; stringent starvation protein A K03599 sspA; stringent starvation protein A D y0131 sspB; stringent starvation protein B K03600 sspB; stringent starvation protein B D y1291 rseA; sigma-E factor, negative regulatory protein K03597 rseA; sigma-E factor negative regulatory protein RseA D y1292 rseB; regulates activity of sigma-E factor K03598 rseB; sigma-E factor negative regulatory protein RseB D y1293 rseC; sigma-E factor, negative regulatory protein K03803 rseC; sigma-E factor negative regulatory protein RseC D y0790 dksA; dnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D y0679 greA; transcription elongation factor K03624 greA; transcription elongation factor GreA D y3915 greB; transcription elongation factor K04760 greB; transcription elongation factor GreB D y0361 rho; transcription termination factor Rho; polarity suppressor K03628 rho; transcription termination factor Rho D y3115 hypothetical protein K19000 rof; Rho-binding antiterminator C 03019 Messenger RNA biogenesis [BR:ypk03019] D y1749 rne; RNase E K08300 rne; ribonuclease E [EC:3.1.26.12] D y0196 cafA; cytoplasmic filament protein K08301 rng; ribonuclease G [EC:3.1.26.-] D y1297 rnc; RNase III, ds RNA K03685 rnc; ribonuclease III [EC:3.1.26.3] D y0637 vacB; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D y0623 hypothetical protein K13288 orn; oligoribonuclease [EC:3.1.-.-] D y0359 rhlB; putative ATP-dependent RNA helicase K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D y0696 deaD; inducible ATP-independent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D y0397 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D y0814 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D y0694 pnp; polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D y0361 rho; transcription termination factor Rho; polarity suppressor K03628 rho; transcription termination factor Rho D y0059 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D y3706 dnaK; chaperone Hsp70 K04043 dnaK; molecular chaperone DnaK D y0609 mopA; GroEL protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D y0630 hfq; putative host factor I for bacteriophage Q beta replication K03666 hfq; host factor-I protein D y1398 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D y0788 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D y3174 putative invasion protein K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D y0884 csrA; carbon storage regulator K03563 csrA; carbon storage regulator D y0203 hypothetical protein K18765 csrD; RNase E specificity factor CsrD D y0292 menG; 2-heptaprenyl-1,4-naphthoquinone methyltransferase K02553 rraA; regulator of ribonuclease activity A D y0741 hypothetical protein K09893 rraB; regulator of ribonuclease activity B D y0158 hypothetical protein K06958 rapZ; RNase adapter protein RapZ D y2011 hrpA; helicase, ATP-dependent K03578 hrpA; ATP-dependent helicase HrpA [EC:5.6.2.6] D y0794 hrpB; helicase, ATP-dependent K03579 hrpB; ATP-dependent helicase HrpB [EC:5.6.2.6] D ys003 spot 42 RNA, inhibition of DNA synthesis K18527 spf; small regulatory RNA Spot 42 C 03041 Spliceosome C 03011 Ribosome [BR:ypk03011] D y2781 rpsA; 30S ribosomal subunit protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D y3137 rpsB; 30S ribosomal subunit protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D y3995 rpsC; 30S ribosomal subunit protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D y4014 rpsD; 30S ribosomal subunit protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D y4007 rpsE; 30S ribosomal subunit protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D y0645 rpsF; 30S ribosomal subunit protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D y3984 rpsG; 30S ribosomal subunit protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D y4003 rpsH; 30S ribosomal subunit protein S8, and regulator K02994 RP-S8; small subunit ribosomal protein S8 D y0133 rpsI; 30S ribosomal subunit protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D y3989 rpsJ; 30S ribosomal subunit protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D y4013 rpsK; 30S ribosomal subunit protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D y3983 rpsL; 30S ribosomal subunit protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D y4012 rpsM; 30S ribosomal subunit protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D y4002 rpsN; 30S ribosomal subunit protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D y0691 rpsO; 30S ribosomal subunit protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D y0894 rpsP; 30S ribosomal subunit protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D y0646 rpsR; 30S ribosomal subunit protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D y3702 rpsT; 30S ribosomal subunit protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D y3535 rpsU; 30S ribosomal subunit protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D y0481 rplA; 50S ribosomal subunit protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D y3993 rplB; 50S ribosomal subunit protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D y3990 rplC; 50S ribosomal subunit protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D y3991 rplD; 50S ribosomal subunit protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D y4001 rplE; 50S ribosomal subunit protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D y4004 rplF; 50S ribosomal subunit protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D y0647 rplI; 50S ribosomal subunit protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D y0482 rplJ; 50S ribosomal subunit protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D y0480 rplK; 50S ribosomal subunit protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D y0483 rplL; 50S ribosomal subunit protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D y0134 rplM; 50S ribosomal subunit protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D y3999 rplN; 50S ribosomal subunit protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D y4009 rplO; 50S ribosomal subunit protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D y3996 rplP; 50S ribosomal subunit protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D y4016 rplQ; 50S ribosomal subunit protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D y4006 rplR; 50S ribosomal subunit protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D y0897 rplS; 50S ribosomal subunit protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D y1905 rplT; 50S ribosomal subunit protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D y0672 rplU; 50S ribosomal subunit protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D y3994 rplV; 50S ribosomal subunit protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D y3992 rplW; 50S ribosomal subunit protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D y4000 rplX; 50S ribosomal subunit protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D y0673 rpmA; 50S ribosomal subunit protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D y3998 rpmC; 50S ribosomal subunit protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D y4008 rpmD; 50S ribosomal subunit protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D y1048 putative ribosomal protein K02909 RP-L31; large subunit ribosomal protein L31 D y0299 rpmE; 50S ribosomal subunit protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D y1753 rpmF; 50S ribosomal subunit protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D y0091 rpmG; 50S ribosomal subunit protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D y4114 rpmH; 50S ribosomal subunit protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D y2920 rplY; 50S ribosomal subunit protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D yr003 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D yr004 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D yr007 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D yr010 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D yr013 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D yr016 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D yr018 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D yr022 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D yr001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D yr005 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D yr008 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D yr011 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D yr014 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D yr020 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D yr024 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D yr002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D yr006 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D yr009 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D yr012 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D yr015 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D yr019 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D yr023 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:ypk03009] D y1297 rnc; RNase III, ds RNA K03685 rnc; ribonuclease III [EC:3.1.26.3] D y2574 hypothetical K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D y0623 hypothetical protein K13288 orn; oligoribonuclease [EC:3.1.-.-] D y1298 era; GTP-binding protein K03595 era; GTPase D y0675 putative GTP-binding factor K03979 obgE; GTPase [EC:3.6.5.-] D y0790 dksA; dnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D y0687 nusA; transcription pausing L factor K02600 nusA; transcription termination/antitermination protein NusA D y1002 nusB; transcription termination; L factor K03625 nusB; transcription antitermination protein NusB D y0479 nusG; component in transcription antitermination K02601 nusG; transcription termination/antitermination protein NusG D y2917 rsuA; 16S pseudouridylate 516 synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D y3683 ksgA; S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D y4021 sun; hypothetical protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D y3753 putative enzyme K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D y0415 hypothetical protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D y3320 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D y4143 gidB; glucose-inhibited division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D y3634 putative apolipoprotein K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D y0117 hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D y3856 hypothetical protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] D y2561 putative enzyme K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D y0638 hypothetical protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D y0681 ftsJ; cell division protein K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D y1668 hypothetical protein K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181] D y3590 putative enzyme K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174] D y1179 hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D y2725 putative oxidoreductase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D y3853 hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D y2751 putative oxidoreductase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D y3152 hypothetical protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D y1350 hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D y2845 putative enzyme K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189] D y3678 hypothetical protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D y2054 hypothetical protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D y1750 hypothetical protein K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D y0912 sfhB; suppressor of ftsH mutation K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D y1801 hypothetical protein K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D y0920 hypothetical protein K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-] D y3751 rimI; acyltransferase for 30S ribosomal subunit protein S18 K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D y2271 rimJ; ribosomal-protein-alanine N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] D y0895 hypothetical protein K02860 rimM; 16S rRNA processing protein RimM D y2788 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor D y0212 prmA; methylase for 50S ribosomal subunit protein L11 K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D y1584 putative adenine-specific methylase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] D y1792 hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] D y1749 rne; RNase E K08300 rne; ribonuclease E [EC:3.1.26.12] D y0196 cafA; cytoplasmic filament protein K08301 rng; ribonuclease G [EC:3.1.26.-] D y3323 hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D y2531 dbpA; ATP-dependent RNA helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] D y0696 deaD; inducible ATP-independent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D y1287 srmB; ATP-dependent RNA helicase K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7] D y0622 hypothetical protein K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D y1357 putative GTP-binding factor K03977 engA; GTPase D y0632 hflX; putative GTP binding subunit for protease of lambda cII repressor K03665 hflX; GTPase D y4027 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D y0103 spoT; (p)ppGpp synthetase II K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D y0689 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D y0686 hypothetical protein K09748 rimP; ribosome maturation factor RimP D y1109 hypothetical protein K14761 rlbA; ribosome-associated protein D y1180 hypothetical protein K09710 ybeB; ribosome-associated protein D y1193 hypothetical protein K07042 ybeY; probable rRNA maturation factor D y0680 hypothetical protein K07574 yhbY; RNA-binding protein D y4084 hypothetical protein K14762 yibL; ribosome-associated protein D y0172 putative alpha helix protein K09889 yjgA; ribosome-associated protein D y0156 probable sigma-54 modulation protein K05808 hpf; ribosome hibernation promoting factor D y0155 putative sigma-54 modulation protein K05808 hpf; ribosome hibernation promoting factor D y0910 putative yhbH sigma 54 modulator K05809 raiA; ribosome-associated inhibitor A D y2298 putative GTP-binding protein K06942 ychF; ribosome-binding ATPase D y1752 hypothetical protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:ypk03016] D y3529 cca; tRNA nucleotidyl transferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D y1498 gltX; glutamate tRNA synthetase, catalytic subunit K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D y3109 proS; proline tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D y3700 ileS; isoleucine tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D y1184 leuS; leucine tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D y2648 metG; methionine tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D y1205 glnS; glutamine tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D y2266 argS; arginine tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D y3272 lysS; lysine tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D y2258 aspS; aspartate tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D y0883 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D y2758 asnS; asparagine tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D y1903 thrS; threonine tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D y2796 serS; serine tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D y1107 cysS; cysteine tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D y0743 valS; valine tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D y1354 hisS; histidine tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D y1908 pheS; phenylalanine tRNA synthetase, alpha-subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D y1909 pheT; phenylalanine tRNA synthetase, beta-subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D y1966 tyrS; tyrosine tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D y3940 trpS; tryptophan tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D y3800 hypothetical protein K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D y1770 hypothetical protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D y3338 hypothetical protein K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D y3108 hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D y1599 truA; pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D y0690 truB; tRNA pseudouridine 5S synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D y0830 putative hydrogenase subunit K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D y1334 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D y2182 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D y4027 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D y0629 miaA; delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D y4118 thdF; GTP-binding protein K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D y4144 gidA; glucose-inhibited division protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D y2157 selD; selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D y0654 cysQ; sulfite synthesis pathway protein K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D y4115 rnpA; RNase P K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D ys001 RNase P, RNA component K01978 rnpB; M1 RNA D y1955 rnt; RNase T, degrades tRNA K03683 rnt; ribonuclease T [EC:3.1.13.-] D y0097 rph; RNase PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D y2077 rnb; RNase II, mRNA degradation K01147 rnb; exoribonuclease II [EC:3.1.13.1] D y2235 rnd; RNase D K03684 rnd; ribonuclease D [EC:3.1.13.5] D y0793 hypothetical protein K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D y4090 glyQ; glycine tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D y4089 glyS; glycine tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D y0789 putative tRNA synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D y1090 hypothetical protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D y1307 putative deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D y0574 hypothetical protein K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D y0213 putative dehydrogenase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D y3015 putative regulator protein K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-] D y1195 hypothetical protein K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D y2261 hypothetical protein K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D y2262 putative enzyme K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-] D y2768 smtA; S-adenosylmethionine-dependent methyltransferase K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-] D y0324 trmA; tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35] D y0896 trmD; tRNA (guanine-7-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D y0920 hypothetical protein K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-] D y0104 spoU; putative RNA methylase K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34] D y1332 putative ATP synthase beta subunit K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200] D y0071 hypothetical protein K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D y1288 putative enzyme K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223] D y3143 hypothetical protein K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26] D y3678 hypothetical protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D y1799 hypothetical protein K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D y1998 hypothetical protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D y0409 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D y3981 hypothetical protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B D y3980 hypothetical protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C D y3979 hypothetical protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D y2723 putative sulfite reductase K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D y1336 putative regulator K13628 iscA; iron-sulfur cluster assembly protein D y3283 hypothetical protein K06980 ygfZ; tRNA-modifying protein YgfZ D y1590 putative peptidase K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] D y0990 queA; probably S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D y1034 hypothetical protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D y0817 putative 6-pyruvoyl tetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D y0816 hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D y3147 hypothetical protein K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D y0624 hypothetical protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D y0991 tgt; tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D y1012 putative oxidoreductase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D y3117 mesJ; cell cycle protein K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D y1424 hypothetical protein K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193] D y2238 hypothetical protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D y3534 putative O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D y0626 hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D y3158 putative enzyme K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D y0637 vacB; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D y0694 pnp; polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:ypk03012] D y2070 hypothetical protein K03113 EIF1; translation initiation factor 1 D y0688 infB; protein chain initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D y1904 infC; protein chain initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D y3969 putative ATP-binding component of a transport system K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D y3135 tsf; protein chain elongation factor EF-Ts K02357 tsf; elongation factor Ts D y0477 tufB; protein chain elongation factor EF-Tu K02358 tuf; elongation factor Tu D y3986 tufB; protein chain elongation factor EF-Tu K02358 tuf; elongation factor Tu D y3985 fusA; GTP-binding protein chain elongation factor EF-G K02355 fusA; elongation factor G D y4073 selB; selenocysteinyl-tRNA-specific translation factor K03833 selB; selenocysteine-specific elongation factor D y2290 prfA; peptide chain release factor RF-1 K02835 prfA; peptide chain release factor 1 D y3133 frr; ribosome releasing factor K02838 frr; ribosome recycling factor D y2289 hemK; possible protoporphyrinogen oxidase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D y2297 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D y2807 infA; protein chain initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D y2901 putative elongation factor K02356 efp; elongation factor P D y0612 efp; elongation factor P (EF-P) K02356 efp; elongation factor P D y0618 putative lysyl-tRNA synthetase K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-] D y0611 hypothetical protein K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-] D y1588 putative transporting ATPase K09906 epmC; elongation factor P hydroxylase [EC:1.14.-.-] D y3273 prfB; peptide chain release factor RF-2 K02836 prfB; peptide chain release factor 2 D y3749 prfC; peptide chain release factor RF-3 K02837 prfC; peptide chain release factor 3 D y4018 hypothetical K09890 arfA; alternative ribosome-rescue factor D y3111 hypothetical protein K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:ypk03110] D y2809 clpA; ATP-binding component of serine protease K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D y0914 clpB; heat shock protein K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D y1028 clpX; ATP-dependent specificity component of clpP serine protease, chaperone K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D y0294 hslU; heat shock protein, ATPase subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D y1064 htpG; chaperone Hsp90, heat shock protein C 62.5 K04079 HSP90A; molecular chaperone HtpG D y3706 dnaK; chaperone Hsp70 K04043 dnaK; molecular chaperone DnaK D y1339 hscA; heat shock protein K04044 hscA; molecular chaperone HscA D y1394 putative heat shock protein K04046 yegD; hypothetical chaperone protein D y0609 mopA; GroEL protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D y3705 dnaJ; chaperone with DnaK; heat shock protein K03686 dnaJ; molecular chaperone DnaJ D y3679 putative DNA binding protein K05801 djlA; DnaJ like chaperone protein D y1338 hypothetical protein K04082 hscB; molecular chaperone HscB D y3919 hypothetical protein K04083 hslO; molecular chaperone Hsp33 D y3073 grpE; heat shock protein K03687 GRPE; molecular chaperone GrpE D y4102 ibpA; heat shock protein K04080 ibpA; molecular chaperone IbpA D y4101 ibpB; heat shock protein K04081 ibpB; molecular chaperone IbpB D y3920 hypothetical protein K04762 hslR; ribosome-associated heat shock protein Hsp15 D y0608 mopB; GroES protein K04078 groES; chaperonin GroES D y0807 htrA; periplasmic serine protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D y0682 hflB; integral membrane peptidase, cell division protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D y4141 atpB; membrane-bound ATP synthase, F0 sector, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a D y0351 chaperone K07346 fimC; fimbrial chaperone protein D y1873 putative pilin chaperone K07346 fimC; fimbrial chaperone protein D y1859 putative pilus assembly chaperone K07346 fimC; fimbrial chaperone protein D y0074 secB; protein export; molecular chaperone K03071 secB; preprotein translocase subunit SecB D y0066 putative solute-binding periplasmic protein of ABC transpoter K06006 cpxP; periplasmic protein CpxP/Spy D y1246 hdeB; hypothetical protein K19778 hdeB; acid stress chaperone HdeB D y0867 putative oxidoreductase component K23349 dmsD; putative dimethyl sulfoxide reductase chaperone D y1516 putative oxidoreductase component K23349 dmsD; putative dimethyl sulfoxide reductase chaperone D y3951 ppiA; peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D y1106 ppiB; peptidyl-prolyl cis-trans isomerase B K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D y1031 putative protease maturation protein K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D y3977 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] D y0651 fklB; FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase (rotamase) K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D y3698 slpA; probable FKBX-type 16KD peptidyl-prolyl cis-trans isomerase K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8] D y3975 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D y0355 ppiC; peptidyl-prolyl cis-trans isomerase C K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D y3681 surA; survival protein K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D y0360 trxA; thioredoxin 1 K03671 TXN; thioredoxin D y0919 trxC; putative thioredoxin-like protein K03672 trxC; thioredoxin 2 [EC:1.8.1.8] D y1097 putative thioredoxin-like protein K05838 ybbN; putative thioredoxin D y2855 grxA; glutaredoxin1 redox coenzyme for glutathione-dependent ribonucleotide reductase K03674 grxA; glutaredoxin 1 D y0075 grxC; glutaredoxin 3 K03676 grxC; glutaredoxin 3 D y1953 hypothetical protein K07390 grxD; monothiol glutaredoxin D y3812 dsbA; protein disulfide isomerase I K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D y2179 dsbB; dsbB protein K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9] D y3275 dsbC; protein disulfide isomerase II K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D y0603 dsbD; thiol:disulfide interchange protein K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16] D y1573 dsbE; disulfide oxidoreductase K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE C 04131 Membrane trafficking [BR:ypk04131] D y1349 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D y2165 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D y3048 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D y1944 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40] D y2246 pykA; pyruvate kinase II, glucose stimulated K00873 PK; pyruvate kinase [EC:2.7.1.40] D y1064 htpG; chaperone Hsp90, heat shock protein C 62.5 K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system [BR:ypk04121] C 03051 Proteasome [BR:ypk03051] D y1064 htpG; chaperone Hsp90, heat shock protein C 62.5 K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:ypk03032] D y3095 rnhA; RNase HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D y0499 hupA; DNA-binding protein HU-alpha (HU-2) K05787 hupA; DNA-binding protein HU-alpha D y1030 hupB; DNA-binding protein HU-beta, NS1 (HU-1) K03530 hupB; DNA-binding protein HU-beta D y1910 himA; integration host factor (IHF), alpha subunit K04764 ihfA; integration host factor subunit alpha D y2779 himD; integration host factor (IHF), beta subunit K05788 ihfB; integration host factor subunit beta D y4113 dnaA; DNA biosynthesis protein K02313 dnaA; chromosomal replication initiator protein D y0577 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D y3536 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D y0582 ssb; ssDNA-binding protein K03111 ssb; single-strand DNA-binding protein D y3120 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Y1106.pl putative DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D y4112 dnaN; DNA polymerase III, beta-subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D y0745 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D y1182 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D y1765 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D y3094 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D y1060 dnaX; DNA polymerase III, tau and gamma subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D y3752 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D y2525 holE; DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D y3121 rnhB; RNAse HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D y3811 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D y1492 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D y0100 putative enzyme K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D y2107 tus; DNA-binding protein K10748 tus; DNA replication terminus site-binding protein D y3937 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D y2224 putative DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D y1257 seqA; negative modulator of initiation of replication K03645 seqA; negative modulator of initiation of replication D y1410 putative DNA replication factor K10763 hda; DnaA-homolog protein D y2972 gyrA; DNA gyrase, subunit A, type II topoisomerase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D y4110 gyrB; DNA gyrase subunit B, type II topoisomerase K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D y3507 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D y3511 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D y2060 topA; DNA topoisomerase type I, omega protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D y2156 topB; DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:ypk03036] D y1297 rnc; RNase III, ds RNA K03685 rnc; ribonuclease III [EC:3.1.26.3] D y2146 hns; DNA-binding protein HLP-II (HU, BH2, HD, NS) K03746 hns; DNA-binding protein H-NS D y0499 hupA; DNA-binding protein HU-alpha (HU-2) K05787 hupA; DNA-binding protein HU-alpha D y1030 hupB; DNA-binding protein HU-beta, NS1 (HU-1) K03530 hupB; DNA-binding protein HU-beta D y1910 himA; integration host factor (IHF), alpha subunit K04764 ihfA; integration host factor subunit alpha D y2779 himD; integration host factor (IHF), beta subunit K05788 ihfB; integration host factor subunit beta D y3723 rob; right origin-binding protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D y4113 dnaA; DNA biosynthesis protein K02313 dnaA; chromosomal replication initiator protein D y0122 hypothetical protein K12961 diaA; DnaA initiator-associating protein D y2726 hypothetical protein K11940 hspQ; heat shock protein HspQ D y1677 dps; dps protein K04047 dps; starvation-inducible DNA-binding protein D y0214 fis; site-specific DNA inversion stimulation factor K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D y0630 hfq; putative host factor I for bacteriophage Q beta replication K03666 hfq; host factor-I protein D y3303 iciA; replication initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D y2801 lrp; regulator protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D y1813 putative regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D y2922 hypothetical protein K06899 ndpA; nucleoid-associated protein D y2765 mukB; kinesin-like cell division protein K03632 mukB; chromosome partition protein MukB D y2766 mukE; hypothetical protein K03804 mukE; chromosome partition protein MukE D y2767 mukF; mukF protein (killing factor KICB) K03633 mukF; chromosome partition protein MukF D y3622 ftsA; ATP-binding cell division protein K03590 ftsA; cell division protein FtsA D y0827 hypothetical protein K05589 ftsB; cell division protein FtsB D y0417 ftsE; ATP-binding component of a membrane-associated complex involved in cell division K09812 ftsE; cell division transport system ATP-binding protein D y3632 ftsI; peptidoglycan synthetase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D y2800 ftsK; cell division protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D y3633 ftsL; cell division protein K03586 ftsL; cell division protein FtsL D y0296 ftsN; essential cell division protein K03591 ftsN; cell division protein FtsN D y3623 ftsQ; cell division protein K03589 ftsQ; cell division protein FtsQ D y3627 ftsW; membrane protein K03588 ftsW; cell division protein FtsW D y0418 ftsX; cell division membrane protein K09811 ftsX; cell division transport system permease protein D y3621 ftsZ; tubulin-like GTP-binding protein and GTPase K03531 ftsZ; cell division protein FtsZ D y1491 zipA; cell division protein K03528 zipA; cell division protein ZipA D y3299 hypothetical protein K09888 zapA; cell division protein ZapA D y0045 hypothetical protein K09892 zapB; cell division protein ZapB D y2753 hypothetical protein K18657 zapC; cell division protein ZapC D y0756 hypothetical protein K18778 zapD; cell division protein ZapD D y0135 hypothetical protein K06916 zapE; cell division protein ZapE D y0650 hypothetical protein K07269 ytfB; cell division protein YtfB D y0627 amiB; N-acetylmuramoyl-l-alanine amidase II K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D y3161 putative amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D y0702 acrA; acridine efflux pump K03585 acrA; membrane fusion protein, multidrug efflux system D y1050 acrA; acridine efflux pump K03585 acrA; membrane fusion protein, multidrug efflux system D y2232 minC; cell division inhibitor K03610 minC; septum site-determining protein MinC D y2233 minD; cell division inhibitor K03609 minD; septum site-determining protein MinD D y2234 minE; cell division topological specificity factor K03608 minE; cell division topological specificity factor D y2734 sulA; suppressor of lon K13053 sulA; cell division inhibitor SulA D y0095 ttk; putative transcriptional regulator K05501 slmA; TetR/AcrR family transcriptional regulator D y1257 seqA; negative modulator of initiation of replication K03645 seqA; negative modulator of initiation of replication D y0202 mreB; regulator of ftsI, penicillin binding protein 3 K03569 mreB; rod shape-determining protein MreB and related proteins D y0201 mreC; rod shape-determining protein K03570 mreC; rod shape-determining protein MreC D y0199 mreD; rod shape-determining protein K03571 mreD; rod shape-determining protein MreD D y1177 mrdB; rod shape-determining membrane protein K05837 rodA; rod shape determining protein RodA D parA.pl parA; partitioning protein K03496 parA; chromosome partitioning protein D Y1092.pl unknown K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D parB.pl parB; partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D y3507 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D y3511 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D y4144 gidA; glucose-inhibited division protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D y4143 gidB; glucose-inhibited division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D y0387 xerC; site-specific recombinase K03733 xerC; integrase/recombinase XerC D y3276 xerD; site-specific recombinase K04763 xerD; integrase/recombinase XerD D y2647 mrp; putative ATPase K03593 mrp; ATP-binding protein involved in chromosome partitioning D y3545 hypothetical K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D y3809 hypothetical protein K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:ypk03400] D y2131 ogt; O-6-alkylguanine-DNA/cysteine-protein methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D y1270 phrB; deoxyribodipyrimidine photolyase (photoreactivation) K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D y1281 ung; uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D y3339 mutY; adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D y2080 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D y3616 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D y0094 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D y0070 ada; O6-methylguanine-DNA methyltransferase; transcription activator/repressor K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D y2473 putative DNA repair enzyme K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D y4091 tag; 3-methyl-adenine DNA glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D y0090 mutM; formamidopyrimidine DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D y2153 xthA; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D y2879 nfo; endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D y0497 nfi; endonuclease V (deoxyinosine 3'endoduclease) K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D y3274 recJ; ssDNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D y1492 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D y0100 putative enzyme K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D y3811 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D y0580 uvrA; excision nuclease subunit A K03701 uvrA; excinuclease ABC subunit A D y3026 uvrB; excision nuclease subunit B K03702 uvrB; excinuclease ABC subunit B D y2442 uvrC; excinuclease ABC, subunit C K03703 uvrC; excinuclease ABC subunit C D y0389 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D y0484 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D y0485 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D y4015 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D y0102 rpoZ; RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D y1784 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D y0835 mutS; methyl-directed mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS D y0628 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D y3175 mutH; methyl-directed mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH D y2610 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D y1361 xseA; exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D y1010 xseB; exonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D y3120 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Y1106.pl putative DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D y4112 dnaN; DNA polymerase III, beta-subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D y0745 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D y1182 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D y1765 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D y3094 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D y1060 dnaX; DNA polymerase III, tau and gamma subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D y3752 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D y2525 holE; DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D y0582 ssb; ssDNA-binding protein K03111 ssb; single-strand DNA-binding protein D y3937 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D y2224 putative DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D y3164 recB; DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D y3166 recC; DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D y3163 recD; DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D y0881 recA; DNA-dependent ATPase, DNA- and ATP-dependent coprotease K03553 recA; recombination protein RecA D y2253 ruvA; Holliday junction helicase subunit B K03550 ruvA; holliday junction DNA helicase RuvA D y2252 ruvB; Holliday junction helicase subunit A K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D y2254 ruvC; Holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D y0298 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D y1056 putative primosomal replication protein N K04067 priC; primosomal replication protein N'' D y0976 sbcC; ATP-dependent dsDNA exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 D y0977 sbcD; ATP-dependent dsDNA exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D y3737 sms; probable ATP-dependent protease K04485 radA; DNA repair protein RadA/Sms D y4111 recF; ssDNA and dsDNA binding protein K03629 recF; DNA replication and repair protein RecF D y0105 recG; DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D y1299 recO; recO protein K03584 recO; DNA repair protein RecO (recombination protein O) D y1062 recR; recombination and repair protein K06187 recR; recombination protein RecR D y3075 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D y0974 hypothetical protein K03554 rdgC; recombination associated protein RdgC D y1722 hypothetical K15342 cas1; CRISP-associated protein Cas1 D y2919 putative ATP-dependent helicase K19789 radD; DNA repair protein RadD D y3952 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase D y2972 gyrA; DNA gyrase, subunit A, type II topoisomerase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D y4110 gyrB; DNA gyrase subunit B, type II topoisomerase K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D y2060 topA; DNA topoisomerase type I, omega protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D y0499 hupA; DNA-binding protein HU-alpha (HU-2) K05787 hupA; DNA-binding protein HU-alpha D y1030 hupB; DNA-binding protein HU-beta, NS1 (HU-1) K03530 hupB; DNA-binding protein HU-beta D y0214 fis; site-specific DNA inversion stimulation factor K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D y1910 himA; integration host factor (IHF), alpha subunit K04764 ihfA; integration host factor subunit alpha D y2779 himD; integration host factor (IHF), beta subunit K05788 ihfB; integration host factor subunit beta D y0397 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D y2146 hns; DNA-binding protein HLP-II (HU, BH2, HD, NS) K03746 hns; DNA-binding protein H-NS D y0959 dinP; damage-inducible protein P; putative tRNA synthetase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D y0572 lexA; regulator for SOS(lexA) regulon K01356 lexA; repressor LexA [EC:3.4.21.88] D y3655 polB; DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D y1747 dinI; damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I D y0882 oraA; regulator, OraA protein K03565 recX; regulatory protein D y0356 rep; rep helicase, a single-stranded DNA dependent ATPase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D y2730 helD; DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D y2982 dinG; probably ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D y2239 putative enzyme K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D y1223 nrdE; ribonucleoside-diphosphate reductase 2, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D y2974 nrdA; ribonucleoside diphosphate reductase 1, alpha subunit, B1 K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D y1222 nrdF; ribonucleoside-diphosphate reductase 2, beta chain, frag K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D y2975 nrdB; ribonucleoside-diphosphate reductase 1, beta subunit, B2 K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:ypk03029] D y0688 infB; protein chain initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D y1904 infC; protein chain initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D y3135 tsf; protein chain elongation factor EF-Ts K02357 tsf; elongation factor Ts D y0477 tufB; protein chain elongation factor EF-Tu K02358 tuf; elongation factor Tu D y3986 tufB; protein chain elongation factor EF-Tu K02358 tuf; elongation factor Tu D y3985 fusA; GTP-binding protein chain elongation factor EF-G K02355 fusA; elongation factor G D y1298 era; GTP-binding protein K03595 era; GTPase D y1966 tyrS; tyrosine tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D y1184 leuS; leucine tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D y2258 aspS; aspartate tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D y2266 argS; arginine tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D y0582 ssb; ssDNA-binding protein K03111 ssb; single-strand DNA-binding protein D y3127 hypothetical protein K07277 SAM50; outer membrane protein insertion porin family D y3706 dnaK; chaperone Hsp70 K04043 dnaK; molecular chaperone DnaK D y3073 grpE; heat shock protein K03687 GRPE; molecular chaperone GrpE D y0609 mopA; GroEL protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D y0608 mopB; GroES protein K04078 groES; chaperonin GroES D y3705 dnaJ; chaperone with DnaK; heat shock protein K03686 dnaJ; molecular chaperone DnaJ D y1334 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D y2182 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D y1338 hypothetical protein K04082 hscB; molecular chaperone HscB D y1953 hypothetical protein K07390 grxD; monothiol glutaredoxin D y2647 mrp; putative ATPase K03593 mrp; ATP-binding protein involved in chromosome partitioning D y1018 cyoE; protoheme IX farnesyltransferase (haeme O biosynthesis) K02257 COX10; heme o synthase [EC:2.5.1.141] D y4117 60 kDa inner-membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D y1064 htpG; chaperone Hsp90, heat shock protein C 62.5 K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:ypk02000] D y2397 ybtP; permease and ATP-binding protein of yersiniabactin-iron ABC transporter K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D y3422 ATP-binding cassette transporter A K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D y2396 ybtQ; permease and ATP-binding protein of yersiniabactin-iron ABC transporter K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D y3423 ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D y2777 msbA; ATP-binding transport protein; multicopy suppressor of htrB K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D y1039 mdlA; ATP-binding component of a transport system K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D y1040 mdlB; putative ATP-binding component of a transport system K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D y2090 putative N-terminal fragment of inner membrane permease K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB D y2093 putative inner membrane permease K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE D y0286 putative secretion ATPase K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D y1158 putative ABC transporter, ATP-binding protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D y2573 putative ABC transporter K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D y0315 hasD; secretion ATPase, Type I secretion system K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D y2805 cydC; ATP-binding component of cytochrome-related transport K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D y2803 cydD; ATP-binding component of cytochrome-related transport K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D y2813 putative ATP-binding component of ABC transport system K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D y1480 putative ATP-binding component of a transport system K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D y2750 uup; putative ATP-binding component of ABC transport system K15738 uup; ABC transport system ATP-binding/permease protein D y1466 cysP; thiosulfate binding periplasmic protein of sulfate/thiosulfate ABC transporter K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D y0058 sbp; periplasmic sulfate-binding protein of sulfate/thiosulfate ABC transporter K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D y1467 cysU; inner membrane permease T of sulfate/thiosulfate ABC transporter K02046 cysU; sulfate/thiosulfate transport system permease protein D y1468 cysW; sulfate/thiosulfate permease K02047 cysW; sulfate/thiosulfate transport system permease protein D y1469 cysA; ATP-binding component of sulfate permease A protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D y3037 modA; molybdate-binding periplasmic protein of molybdate ABC transporter K02020 modA; molybdate transport system substrate-binding protein D y0057 modA; molybdate-binding periplasmic protein precursor K02020 modA; molybdate transport system substrate-binding protein D y3036 modB; inner membrane permease protein of molybdate ABC transport system K02018 modB; molybdate transport system permease protein D y3035 modC; ATP-binding component of molybdate transport K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D y3041 modF; ATP-binding component of molybdate transport system K05776 modF; molybdate transport system ATP-binding protein D y3963 tauA; taurine-binding periplasmic protein of taurine ABC transport system K15551 tauA; taurine transport system substrate-binding protein D y3965 tauC; taurine ABC transport system inner membrane permease protein K15552 tauC; taurine transport system permease protein D y3964 tauB; taurine ATP-binding component of ABC transport system K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7] D y0245 ssuA; solute-binding periplasmic protein of aliphatic sulfonates, ABC transporter K15553 ssuA; sulfonate transport system substrate-binding protein D y0243 ssuC; putative transport system permease protein of aliphatic sulfonates ABC transporter K15554 ssuC; sulfonate transport system permease protein D y0242 ssuB; putative ATP-binding component of a transport system of aliphatic sulfonates ABC transporter K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D y1526 yfuA; solute-binding periplasmic protein for iron ABC transporter K02012 afuA; iron(III) transport system substrate-binding protein D y1430 putative solute-binding periplasmic protein of ABC transporter K02012 afuA; iron(III) transport system substrate-binding protein D y1525 yfuB; inner membrane permease of iron ABC transporter K02011 afuB; iron(III) transport system permease protein D y1431 putative inner membrane permease of ABC transporter K02011 afuB; iron(III) transport system permease protein D y1524 yfuC; ATP-binding protein of iron ABC transporter K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D y1432 potA; spermidine/putrescine transport ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D y3651 tbpA; thiamin-binding periplasmic protein of ABC transporter K02064 thiB; thiamine transport system substrate-binding protein D y3652 thiP; putative ABC transport system thiamine permease protein K02063 thiP; thiamine transport system permease protein D y3653 thiQ; putative ATP-binding component of a transport system K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D y2851 potF; periplasmic putrescine-binding protein of putrescine ABC transporter K11073 potF; putrescine transport system substrate-binding protein D y2847 potI; putrescine ABC transport protein; permease K11074 potI; putrescine transport system permease protein D y2848 potH; putrescine permease of ABC transporter K11075 potH; putrescine transport system permease protein D y2849 potG; ATP-binding component of putrescine ABC transport system K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D y1391 putative substrate-binding protein of ABC transporter K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D y2281 putative ABC transporter periplasmic binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D y1393 putative permease of ABC transporter K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D y2280 putative ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D y1392 putative permease of ABC transporter K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D y2279 putative ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D y1388 ATP hydrolase of ABC transporter K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D y1219 proX; solute-binding periplasmic protein of high-affinity glycine betaine/proline ABC transporterhigh-affinity ABC transport system for glycine betaine and proline K02002 proX; glycine betaine/proline transport system substrate-binding protein D y1220 proW; permease of high-affinity ABC transport system for glycine betaine and proline K02001 proW; glycine betaine/proline transport system permease protein D y1221 proV; ATP-binding component of high affinity transport system for glycine, betaine and proline K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D y2994 yehZ1; hypothetical K05845 opuC; osmoprotectant transport system substrate-binding protein D y2993 yehZ2; hypothetical K05845 opuC; osmoprotectant transport system substrate-binding protein D y2992 putative ABC transport system inner membrane permease K05846 opuBD; osmoprotectant transport system permease protein D y2990 putative inner membrane permease of ABC transport system K05846 opuBD; osmoprotectant transport system permease protein D y2991 putative ATP-binding component of ABC transporter K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D y2116 putative solute-binding periplasmic protein of ABC transporter K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D y2117 putative inner membrane permease for ABC transporter K02050 ABC.SN.P; NitT/TauT family transport system permease protein D y2118 tauB; taurine ATP-binding component of a transport system K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D y0028 malE; periplasmic maltose-binding protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein D y0027 malF; inner membrane permease of maltose ABC transporter K10109 malF; maltose/maltodextrin transport system permease protein D y0026 malG; inner membrane permease of maltose/maltodextran ABC transporter K10110 malG; maltose/maltodextrin transport system permease protein D y0031 malK; ATP-binding component of ABC transport system for maltose K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D y1709 malK; inner membrane ABC transporter K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D y3242 putative transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D y2413 hypothetical K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D y2414 malK; ATP-binding component of transport system for maltose K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D y3569 ATP-binding component of sn-glycerol 3-phosphate transport system K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D y0715 ugpC; ATP-binding component of sn-glycerol 3-phosphate transport system K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D y3241 putative periplasmic binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein D y3240 malF; putative malF-type permease K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D y3239 malG; putative malG type permease K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D y2096 araF; L-arabinose-binding periplasmic protein K10537 araF; L-arabinose transport system substrate-binding protein D y2098 araH; high-affinity L-arabinose transport system membrane protein K10538 araH; L-arabinose transport system permease protein D y2097 araG; ATP-binding component of high-affinity L-arabinose transport system K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12] D y1881 togB; putative solute-binding periplasmic protein of oligogalacturonide ABC transporter K10192 togB; oligogalacturonide transport system substrate-binding protein D y1884 togM; putative inner membrane permease of oligogalacturonide ABC transporter K10193 togM; oligogalacturonide transport system permease protein D y1883 togN; putative inner membrane permease of oligogalacturonide ABC transporter K10194 togN; oligogalacturonide transport system permease protein D y1882 togA; ABC transporter, ATP-binding protein K10195 togA; oligogalacturonide transport system ATP-binding protein D y2662 mglB; periplasmic D-galactose-binding ABC transport protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D y2660 mglC; inner membrane permease of galactoside ABC transporter K10541 mglC; methyl-galactoside transport system permease protein D y2661 mglA; ATP-binding component of methyl-galactoside ABC transporter and galactose taxis K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11] D y4056 xylF; xylose binding periplasmic protein of ABC transport system K10543 xylF; D-xylose transport system substrate-binding protein D y4054 xylH; inner membrane permease of D-xylose ABC transporter K10544 xylH; D-xylose transport system permease protein D y4055 xylG; putative ATP-binding protein of xylose ABC transport system K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D y1687 putative solute binding protein of ABC transporter K10439 rbsB; ribose transport system substrate-binding protein D y3346 periplasmic binding protein for ABC transporter K10439 rbsB; ribose transport system substrate-binding protein D y3867 D-ribose-binding periplasmic protein of ABC transporter K10439 rbsB; ribose transport system substrate-binding protein D y1689 rbsC; D-ribose high-affinity transport system K10440 rbsC; ribose transport system permease protein D y3344 putative permease of ABC transporter K10440 rbsC; ribose transport system permease protein D y3866 rbsC; D-ribose high-affinity transport protein K10440 rbsC; ribose transport system permease protein D y1688 rbsA; ATP-binding component of D-ribose high-affinity transport system K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D y3345 putative ATP-binding component of ABC transport system K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D y3865 rbsA; ATP-binding component of D-ribose high-affinity transport system K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D y0328 solute-binding periplasmic protein of ABC transporter K23508 ytfQ; galactofuranose transport system substrate-binding protein D y0331 putative ABC transporter permease protein K23509 ytfT; galactofuranose transport system permease protein D y0330 putative ABC transport system inner membrane permease protein K23509 ytfT; galactofuranose transport system permease protein D y0329 putative ATP-binding component of ATP transport system K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9] D y0871 putative solute-binding periplasmic protein of ABC transporter K17202 eryG; erythritol transport system substrate-binding protein D y0874 rbsC; sugar (D-ribose) transport system permease protein K17203 eryF; erythritol transport system permease protein D y0873 putative ATP-binding protein of ABC transport system K17204 eryE; erythritol transport system ATP-binding protein D y3245 putative periplasmic binding protein precursor K17205 xltC; putative xylitol transport system substrate-binding protein D y3244 rbsC; D-ribose high-affinity transport system protein K17206 xltB; putative xylitol transport system permease protein D y3243 rbsA; ATP-binding component of D-ribose high-affinity transport system K17207 xltA; putative xylitol transport system ATP-binding protein D y1149 putative periplasmic solute-binding protein of ABC transporter K17208 ibpA; inositol transport system substrate-binding protein D y1151 rbsC; D-ribose high-affinity transport system K17209 iatP; inositol transport system permease protein D y1150 rbsA; ATP-binding component of D-ribose high-affinity transport system K17210 iatA; inositol transport system ATP-binding protein D y0434 ugpB; periplasmic binding protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D y0435 ugpA; integral membrane protein, permease K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D y0436 ugpE; inner membrane permease K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D y0437 ugpC; ATP-binding component K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D y3772 putative LACI-type transcriptional regulator K10555 lsrB; AI-2 transport system substrate-binding protein D y3770 putative ABC transport system permease protein K10556 lsrC; AI-2 transport system permease protein D y3771 putative ABC transport system permease protein K10557 lsrD; AI-2 transport system permease protein D y3769 putative ATP-binding component of a transport system K10558 lsrA; AI-2 transport system ATP-binding protein D y0144 hypothetical protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D y0145 hypothetical protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D y0146 putative ATP-binding component of ABC transport system K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D y0143 hypothetical protein K07323 mlaC; phospholipid transport system substrate-binding protein D y0142 hypothetical protein K07122 mlaB; phospholipid transport system transporter-binding protein D y1712 putative solute-binding periplasmic protein of ABC transporter K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D y2417 putative periplasmic solute-binding protein of ABC transporter K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D y3566 putative solute-binding periplasmic protein of ABC transporter K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D y0712 solute-binding periplasmic protein of ABC transporter K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D y3565 putative inner membrane permease protein of ABC transporter K02025 ABC.MS.P; multiple sugar transport system permease protein D y1713 putative inner membrane permease of ABC transporter K02025 ABC.MS.P; multiple sugar transport system permease protein D y0713 putative sugar transport permease K02025 ABC.MS.P; multiple sugar transport system permease protein D y2416 putative permease of ABC transporter K02025 ABC.MS.P; multiple sugar transport system permease protein D y3564 putative inner membrane permease protein of ABC transporter K02026 ABC.MS.P1; multiple sugar transport system permease protein D y1714 putative inner membrane permease of ABC transporter K02026 ABC.MS.P1; multiple sugar transport system permease protein D y2415 putative permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D y0714 putative sugar transport permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D y0861 putative solute-binding periplasmic protein of ABC transporter K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D y2494 putative solute-binding periplasmic protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D y0235 putative periplasmic binding protein of ABC transporter K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D y2891 putative permease K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D y2651 putative ABC transporter binding protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D y2615 putative ABC transporter permease K02057 ABC.SS.P; simple sugar transport system permease protein D y0232 putative permease of ABC transporter K02057 ABC.SS.P; simple sugar transport system permease protein D y0857 putative inner membrane permease protein of ABC transport system K02057 ABC.SS.P; simple sugar transport system permease protein D y0858 putative inner membrane permease protein of ABC transport system K02057 ABC.SS.P; simple sugar transport system permease protein D y0233 putative permease of ABC transporter K02057 ABC.SS.P; simple sugar transport system permease protein D y2889 putative permease K02057 ABC.SS.P; simple sugar transport system permease protein D y2495 putative permease of ABC transporter K02057 ABC.SS.P; simple sugar transport system permease protein D y2492 putative permease of ABC transporter K02057 ABC.SS.P; simple sugar transport system permease protein D y0249 putative inner membrane permease K02057 ABC.SS.P; simple sugar transport system permease protein D y2890 putative ABC transporter K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D y0859 putative ATP-binding protein of ABC transport system K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D y2493 ATP binding protein of ABC transporter for ribose K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D y0234 putative ATP-binding protein of ABC transporter K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D y4131 pstS; periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D y0980 putative solute-binding periplasmic protein for ABC transport system K02040 pstS; phosphate transport system substrate-binding protein D y4130 pstC; inner membrane permease K02037 pstC; phosphate transport system permease protein D y1399 putative inner membrane permease of high-affinity phosphate-specific transport system K02037 pstC; phosphate transport system permease protein D y4129 pstA; inner membrane permease K02038 pstA; phosphate transport system permease protein D y1400 putative inner membrane permease of high-affinity phosphate-specific ABC transporter K02038 pstA; phosphate transport system permease protein D y4128 pstB; ATP-binding component of high-affinity phosphate-specific ABC transport system K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D y1401 pstB; phosphate-specific transport component K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D y3006 putative solute-binding protein of ABC transporter K02044 phnD; phosphonate transport system substrate-binding protein D y3004 putative inner membrane permease of ABC transporter K02042 phnE; phosphonate transport system permease protein D y3005 putative inner membrane permease of ABC transporter K02042 phnE; phosphonate transport system permease protein D y3007 phnC; ATP-binding component of phosphonate transport K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D y1609 hisM; histidine ABC transporter, inner membrane permease K10015 hisM; histidine transport system permease protein D y1608 hisQ; histidine ABC transport system inner membrane permease K10016 hisQ; histidine transport system permease protein D y1610 hisP; ATP-binding component of histidine ABC transport K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1] D y1607 hisJ; histidine-binding periplasmic protein of high-affinity histidine transport system K10014 hisJ; histidine transport system substrate-binding protein D y1675 glnH; glutamine-binding periplasmic protein for high-affinity glutamine ABC transporter K10036 glnH; glutamine transport system substrate-binding protein D y1674 glnP; inner membrane permease K10037 glnP; glutamine transport system permease protein D y1673 glnQ; ATP-binding component of glutamine high-affinity glutamine ABC transport system K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D y2844 artJ; arginine 3rd transport system periplasmic binding protein K09996 artJ; arginine transport system substrate-binding protein D y2830 artI; arginine 3rd transport system periplasmic binding protein K09997 artI; arginine transport system substrate-binding protein D y2832 artM; arginine 3rd transport system permease protein K09998 artM; arginine transport system permease protein D y2831 artQ; arginine 3rd transport system permease protein K09999 artQ; arginine transport system permease protein D y2829 artP; ATP-binding component of 3rd arginine transport system K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1] D y1189 gltI; solute-binding periplasmic protein of glutamate/aspartate ABC transporter K10001 gltI; glutamate/aspartate transport system substrate-binding protein D y1187 gltK; glutamate/aspartate inner membrane permease K10002 gltK; glutamate/aspartate transport system permease protein D y1188 gltJ; glutamate/aspartate ABC transport system inner membrane permease K10003 gltJ; glutamate/aspartate transport system permease protein D y1186 gltL; ATP-binding protein of glutamate/aspartate transport system K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D y2460 fliY; putative periplasmic cysteine-binding ABC transport protein K02424 tcyA; L-cystine transport system substrate-binding protein D y2459 putative ABC transporter permease for cystine K10009 tcyB; L-cystine transport system permease protein D y2458 putative ATP-binding component of ABC transport system K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D y0422 livK; high-affinity leucine-specificleucine-specific-binding periplasmic protein of high-affinity branched-chain amino acid ABC transporter transport system; periplasmic binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D y0423 livH; high-affinity branched-chain amino acid ABC transport system membrane permease K01997 livH; branched-chain amino acid transport system permease protein D y0424 livM; inner membrane permease of high-affinity branched-chain amino acid ABC transport system K01998 livM; branched-chain amino acid transport system permease protein D y0425 livG; ATP-binding component of high-affinity branched-chain amino acid ABC transport system K01995 livG; branched-chain amino acid transport system ATP-binding protein D y0426 livF; ATP-binding component of leucine transport K01996 livF; branched-chain amino acid transport system ATP-binding protein D y3106 putative lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D y2867 putative lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D y2865 putative transport system permease protein K02072 metI; D-methionine transport system permease protein D y3105 putative transport system permease protein K02072 metI; D-methionine transport system permease protein D y3104 abc; ATP-binding component of a transporter K02071 metN; D-methionine transport system ATP-binding protein D y2866 abc; ATP-binding component of ATP transporter K02071 metN; D-methionine transport system ATP-binding protein D y3002 putative Leu/Ile/Val/Thr binding protein of ABC transporter K11959 urtA; urea transport system substrate-binding protein D y3001 putative branched chain inner membrane permease of ABC transporter K11960 urtB; urea transport system permease protein D y3000 putative inner membrane permease of ABC transporter K11961 urtC; urea transport system permease protein D y2999 hypothetical ABC transporter ATP-binding protein K11962 urtD; urea transport system ATP-binding protein D y2998 livF; ATP-binding component of ABC transporter K11963 urtE; urea transport system ATP-binding protein D y3027 putative ATP-binding protein of ABC transporter K11963 urtE; urea transport system ATP-binding protein D y4125 putative solute-binding periplasmic protein precursor for ABC transporter K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D y0932 putative solute-binding protein of ABC transporter K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D y4123 putative amino acid ABC transport system permease K02029 ABC.PA.P; polar amino acid transport system permease protein D y4124 gltJ; putative glutamate/aspartate ABC transport system permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein D y0933 putative inner membrane permease of ABC transporter K02029 ABC.PA.P; polar amino acid transport system permease protein D y0934 putative permease of ABC transporter K02029 ABC.PA.P; polar amino acid transport system permease protein D y0935 glnQ; glutamine transport atp-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D y2026 oppA; oligopeptide ABC transporter; periplasmic binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D y1993 putative transport periplasmic protein K15580 oppA; oligopeptide transport system substrate-binding protein D y2027 oppB; oligopeptide ABC transporter; permease protein K15581 oppB; oligopeptide transport system permease protein D y2028 oppC; oligopeptide ABC transporter; permease protein K15582 oppC; oligopeptide transport system permease protein D y2029 oppD; ATP-binding protein of oligopetide ABC transporter K15583 oppD; oligopeptide transport system ATP-binding protein D y2030 oppF; ATP-binding protein of oligopetide ABC transporter K10823 oppF; oligopeptide transport system ATP-binding protein D y3825 dppA; periplasmic dipeptide transport protein of ABC transporter K12368 dppA; dipeptide transport system substrate-binding protein D y3826 dppB; dipeptide transport system inner membrane permease K12369 dppB; dipeptide transport system permease protein D y3828 dppC; dipeptide transport system permease protein 2 K12370 dppC; dipeptide transport system permease protein D y3829 dppD; putative ATP-binding component of dipeptide ABC transport system K12371 dppD; dipeptide transport system ATP-binding protein D y3830 dppF; putative ATP-binding component of dipeptide ABC transport system K12372 dppF; dipeptide transport system ATP-binding protein D y1977 sapA; peptide-binding periplasmic protein of peptide ABC transport system K19226 sapA; cationic peptide transport system substrate-binding protein D y1976 sapB; peptide ABC transport inner membrane permease protein K19227 sapB; cationic peptide transport system permease protein D y1975 sapC; homolog of Salmonella peptide transport permease protein K19228 sapC; cationic peptide transport system permease protein D y1974 sapD; putative ATP-binding protein of peptide ABC transport system K19229 sapD; cationic peptide transport system ATP-binding protein D y1973 sapF; putative ATP-binding protein of peptide ABC transport system K19230 sapF; cationic peptide transport system ATP-binding protein D y1231 putative substrate-binding periplasmic protein of ABC transporter K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D y0737 putative transport system permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D y1232 putative permease of ABC transporter K02033 ABC.PE.P; peptide/nickel transport system permease protein D y0736 dppC; dipeptide transport system permease protein 2 K02034 ABC.PE.P1; peptide/nickel transport system permease protein D y1233 putative permease of ABC transporter K02034 ABC.PE.P1; peptide/nickel transport system permease protein D y0735 dppD; putative ATP-binding component of dipeptide transport system K02031 ddpD; peptide/nickel transport system ATP-binding protein D y1234 putative ATP-binding protein of ABC transport system K02031 ddpD; peptide/nickel transport system ATP-binding protein D y0734 dipeptide ABC transporter, ATP binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D y1235 putative ATP-binding protein of ABC transport system K02032 ddpF; peptide/nickel transport system ATP-binding protein D y2910 hypothetical protein K13893 yejA; microcin C transport system substrate-binding protein D y2911 putative transport system permease protein K13894 yejB; microcin C transport system permease protein D y2912 putative transport system permease protein K13895 yejE; microcin C transport system permease protein D y2913 putative ATP-binding component of a transport system K13896 yejF; microcin C transport system ATP-binding protein D y0797 fhuD; solute-binding periplasmic protein of hydroxamate-dependent iron ABC transporter K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D y0798 fhuB; inner membrane permease of ABC transporter K23228 fhuB; ferric hydroxamate transport system permease protein D y0796 fhuC; ATP-binding component of hydroxymate-dependent iron ABC transporter K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D y0541 hmuT; periplasmic binding protein K25132 hmuT; heme transport system substrate-binding protein D y0540 hmuU; ABC-type permease K25133 hmuU; heme transport system permease protein D y0539 hmuV; ATP-binding protein of ABC transporter K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5] D y3477 fepB; ferric enterobactin (enterochelin) binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein D y2634 ysuA; putative solute-binding periplasmic protein of ABC transporter K25286 fagD; iron-siderophore transport system substrate-binding protein D y2635 ysuB; putative permease for iron transport system K23186 fepD; iron-siderophore transport system permease protein D y2636 ysuC; putative inner membrane permease of ABC transporter K23187 fepG; iron-siderophore transport system permease protein D y2637 ysuD; putative ATP-binding component for iron transport system K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D y4043 putative solute-binding iron ABC transport protein K25282 yclQ; iron-siderophore transport system substrate-binding protein D y4045 ferric anguibactin transport system permease protein K25283 yclO; iron-siderophore transport system permease protein D y4044 putative iron permease, ABC transporter K25284 yclN; iron-siderophore transport system permease protein D y4046 fecE; ATP-binding component of citrate-dependent iron(III) transport protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-] D y2875 yiuA; solute-binding periplasmic protein of iron/siderophore ABC transporter K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D y3342 putative solute-binding periplasmic protein of ABC transporter K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D y2838 hypothetical K02015 ABC.FEV.P; iron complex transport system permease protein D y2874 yiuB; inner membrane permease of iron/siderophore ABC transporter K02015 ABC.FEV.P; iron complex transport system permease protein D y2839 putative inner membrane permease of iron ABC transporter K02015 ABC.FEV.P; iron complex transport system permease protein D y2837 putative ABC transport protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D y2873 yiuC; ATP-binding protein of iron/siderophore ABC transporter K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D y0804 hypothetical protein K06858 btuF; vitamin B12 transport system substrate-binding protein D y1914 btuC; vitamin B12 transport permease protein K06073 btuC; vitamin B12 transport system permease protein D y1916 btuD; ATP-binding component of vitamin B12 transport system K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8] D y2249 znuA; solute-binding periplasmic protein for zinc ABC transporter K09815 znuA; zinc transport system substrate-binding protein D y2251 znuB; inner membrane permease of zinc ABC transporter K09816 znuB; zinc transport system permease protein D y2250 znuC; ATP-binding component of zinc ABC transport system K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D y1897 yfeA; periplasmic-binding protein for iron and manganese ABC transporter K11604 sitA; manganese/iron transport system substrate-binding protein D y1895 yfeC; permease for iron and manganese ABC transporter K11605 sitC; manganese/iron transport system permease protein D y1894 yfeD; permease for iron and manganese ABC transporter K11606 sitD; manganese/iron transport system permease protein D y1896 yfeB; ATP-binding protein for iron and manganese ABC transporter K11607 sitB; manganese/iron transport system ATP-binding protein D y0747 hypothetical protein K07091 lptF; lipopolysaccharide export system permease protein D y0748 hypothetical protein K11720 lptG; lipopolysaccharide export system permease protein D y0153 putative ATP-binding component of ABC transport system K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D y1785 hypothetical protein K09808 lolC_E; lipoprotein-releasing system permease protein D y1787 putative kinase K09808 lolC_E; lipoprotein-releasing system permease protein D y1786 putative ATP-binding component of a transport system K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D y1570 ccmD; heme exporter protein D K02196 ccmD; heme exporter protein D D y1569 ccmC; heme exporter protein C K02195 ccmC; heme exporter protein C D y1568 ccmB; heme exporter protein B K02194 ccmB; heme exporter protein B D y1567 ccmA; ATP binding protein of heme exporter A K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D y0418 ftsX; cell division membrane protein K09811 ftsX; cell division transport system permease protein D y0417 ftsE; ATP-binding component of a membrane-associated complex involved in cell division K09812 ftsE; cell division transport system ATP-binding protein D y0781 inner membrane permease of ABC transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D y0780 putative ATP-binding component of ABC transport system K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D y1101 putative oxidoreductase K02004 ABC.CD.P; putative ABC transport system permease protein D y2366 putative ABC inner membrane permease K02004 ABC.CD.P; putative ABC transport system permease protein D y2365 putative integral membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein D y2669 hypothetical K02004 ABC.CD.P; putative ABC transport system permease protein D y2671 putative ATP-binding ABC transporter protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D y1100 putative ATP-binding component of a transport system K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D y2364 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D y1936 putative ATP-binding component of a transport system K09013 sufC; Fe-S cluster assembly ATP-binding protein D y2102 putative cytochrome oxidase K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D y3435 conserved hypothetical protein K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5 D y1945 putative transport protein K26939 norM; MATE family, multidrug efflux pump D y2593 hypothetical protein K26937 dinF; MATE family, multidrug efflux pump D y2581 lacY; galactoside permease (M protein) K02532 lacY; MFS transporter, OHS family, lactose permease D y3649 setA; putative efflux protein K03291 MFS.SET; MFS transporter, SET family, sugar efflux transporter D y3709 putative proline/betaine transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter D y1465 nanT; sialic acid transporter K03290 nanT; MFS transporter, SHS family, sialic acid transporter D y3232 exuT; putative hexuronate transporter transmembrane protein K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter D y3601 exuT; transport of hexuronates K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter D y2540 hpaX; hypothetical 4-hydroxyphenylacetate permease K02511 hpaX; MFS transporter, ACS family, 4-hydroxyphenylacetate permease D y2602 putative transport protein K26580 rhmT; MFS transporter, ACS family, inner membrane transport protein D y1325 hcaT; MFS (major facilitator superfamily) transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter D y3821 uhpC; regulator of uhpT K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC D y3180 putative resistance protein K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter D y1023 ampG; ampG protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D y2173 hypothetical K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D y2916 bcr; bicyclomycin resistance protein; transmembrane protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D y4067 cmr; proton motive force efflux pump protein K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein D y2272 putative permease K08162 mdtH; MFS transporter, DHA1 family, multidrug resistance protein D y3186 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D y0921 emrB; putative membrane translocase K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D y1874 putative transport protein K08169 yebQ; MFS transporter, DHA2 family, multidrug resistance protein D y1383 putative permease, major facilitator superfamily K18326 mdtD; MFS transporter, DHA2 family, multidrug resistance protein D y1087 rosA; putative drug efflux protein K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein D y2108 putative transport protein K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein D y1829 putative resistance protein, transport K26602 yihN; MFS transporter, GlpU family, inner membrane protein D y2395 ybtX; hypothetical K05373 ybtX; MFS transporter, putative signal transducer D y3947 permease (major facilitator superfamily) K06141 tsgA; MFS transporter, TsgA protein D y1730 putative permease, major facilitator superfamily K08368 yaaU; MFS transporter, putative metabolite transport protein D y1487 ptsI; PEP-protein phosphotransferase system enzyme I K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D y3173 ptsP; PTS system enzyme I K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D y1488 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D y0159 ptsO; phosphocarrier protein HPr-like NPr K08485 ptsO; phosphocarrier protein NPr D y3776 ptsA; PEP-protein phosphotransferase system enzyme I K23991 ptsA; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.-] D y2887 fruB; PTS system, fructose-specific IIA/fpr component K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202] D y1485 crr; PTS system, glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D y1767 ptsG; PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D y3236 hypothetical K02778 ptsGb; glucose PTS system EIIB component [EC:2.7.1.199] D y1203 nagE; PTS system, N-acetylglucosamine-specific enzyme IIABC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D y0166 treB; PTS system enzyme IIBC K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201] D y2885 fruA; PTS system, fructose-specific IIBC transport protein K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D y3780 frwD; PTS system fructose-like IIB component 2 K11202 fryB; fructose-like PTS system EIIB component [EC:2.7.1.-] D y3778 frwB; PTS system fructose-like IIB component 1 K11202 fryB; fructose-like PTS system EIIB component [EC:2.7.1.-] D y3777 frwC; PTS system fructose-like enzyme 2IIC component K11203 fryC; fructose-like PTS system EIIC or EIIBC or EIIABC component D y4087 mtlA; PTS system mannitol-specific enzyme IIABC components K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D y1253 celC; PEP-dependent phosphotransferase IIA component for cellobiose, arbutin, and salicin K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D y1251 celA; PEP-dependent phosphotransferase enzyme IV for cellobiose, arbutin, and salicin K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D y1252 celB; PEP-dependent phosphotransferase enzyme II for cellobiose, arbutin, and salicin K02761 celB; cellobiose PTS system EIIC component D y2551 manX; PTS enzyme IIAB, mannose-specific K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D y2552 manY; PTS enzyme IIC, mannose-specific K02795 manY; mannose PTS system EIIC component D y2553 manZ; PTS enzyme IID, mannose-specific K02796 manZ; mannose PTS system EIID component D y3222 hypothetical K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D y3219 agaV; PTS family enzyme IIB component 2 (EIIB-AGA) K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-] D y3220 putative permease protein K02746 agaW; N-acetylgalactosamine PTS system EIIC component D y3221 putative PTS permease protein K02747 agaE; N-acetylgalactosamine PTS system EIID component D y1618 putative phosphotransferase system IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D y1617 hypothetical K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D y1615 conserved hypothetical protein K03475 ulaA; ascorbate PTS system EIIC component D y0157 ptsN; phosphotransferase system enzyme IIA K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D y0046 glpF; facilitator for glycerol uptake K02440 glpF; glycerol uptake facilitator D y1247 putative potassium channel K10716 kch; voltage-gated potassium channel D y1042 amtB; probable ammonium transporter K03320 amt; ammonium transporter, Amt family D y1968 gst; glutathionine S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D y2871 putative transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D y0132 sspA; regulator of transcription; stringent starvation protein A K03599 sspA; stringent starvation protein A D y1474 hypothetical K07114 yfbK; Ca-activated chloride channel homolog D y2789 focA; probable formate transporter K06212 focA; formate transporter D y3942 nirC; putative nitrite transporter K02598 nirC; nitrite transporter D y4019 mscL; mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel D y1054 aefA; putative alpha helix protein K05802 mscK; potassium-dependent mechanosensitive channel D y0619 putative periplasmic binding transport protein K22051 mscM; miniconductance mechanosensitive channel D y3306 putative transport protein K03442 mscS; small conductance mechanosensitive channel D y1720 putative transport protein K16053 ybdG; miniconductance mechanosensitive channel D y1395 putative divalent cation transporter K06213 mgtE; magnesium transporter D y1244 hypothetical K08717 utp; urea transporter D y1823 motA; proton conductor component of motor K02556 motA; chemotaxis protein MotA D y1826 motB; lateral flagellar motor protein K02557 motB; chemotaxis protein MotB D y3495 exbB; TonB complex protein K03561 exbB; biopolymer transport protein ExbB D y3494 exbD; TonB-complex protein K03559 exbD; biopolymer transport protein ExbD D y3058 tolQ; inner membrane protein K03562 tolQ; biopolymer transport protein TolQ D y3057 tolR; putative inner membrane protein K03560 tolR; biopolymer transport protein TolR D y0393 corA; magnesium and cobalt permease K03284 corA; magnesium transporter D y1994 hypothetical protein K16074 zntB; zinc transporter D y1168 crcB; hypothetical protein K06199 crcB; fluoride exporter D y1249 hypothetical K06199 crcB; fluoride exporter D y1248 hypothetical K06199 crcB; fluoride exporter D y0657 putative membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D y0890 conserved hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D y2759 putative outer membrane porin K09476 ompF; outer membrane pore protein F D y2983 putative outer membrane porin K11929 phoE; outer membrane pore protein E D y2966 ompC; outer membrane protein 1b (Ib;c) K09475 ompC; outer membrane pore protein C D y0032 lamB; maltose high-affinity receptor K02024 lamB; maltoporin D y3235 putative outer membrane protein K02024 lamB; maltoporin D y2735 ompA; outer membrane porin A K03286 TC.OOP; OmpA-OmpF porin, OOP family D y1682 ompX; outer membrane protein X K11934 ompX; outer membrane protein X D y1324 ompX; outer membrane protein X K16078 ail; attachment invasion locus protein D y1577 fadL; long-chain fatty acid transport protein K06076 fadL; long-chain fatty acid transport protein D y1858 hypothetical K07347 fimD; outer membrane usher protein D y0350 fimD; outer membrane usher protein FIMD precursor K07347 fimD; outer membrane usher protein D y1871 putative usher protein K07347 fimD; outer membrane usher protein D y2880 psaC; outer membrane usher protein K07347 fimD; outer membrane usher protein D y2390 putative outer membrane usher protein K07347 fimD; outer membrane usher protein D caf1A.pl caf1A; F1 capsule K07347 fimD; outer membrane usher protein D y3396 yapH; putative autotransporter adhesin K12678 aidA-I; autotransporter family porin D y0325 btuB; outer membrane receptor for transport of vitamin B12, E colicins, and bacteriophage BF23 K16092 btuB; vitamin B12 transporter D y0314 hasA; secreted hemophore K12545 hasA; heme acquisition protein HasA D y0313 hasR; putative outer membrane receptor K16152 hasR; heme acquisition protein HasR D y2404 psn; pesticin/yersiniabactin outer membrane receptor K15721 fyuA; pesticin/yersiniabactin receptor D y2633 ysuR; putative outer membrane iron/siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D y0850 putative outer membrane receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D y2872 yiuR; putative outer membrane iron/siderophore receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D y0543 hmuR; TonB-dependent outer membrane receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D y3343 putative TonB-dependent outer membrane receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D y2556 fcuA; putative ferrichrome receptor, TonB dependent K02014 TC.FEV.OM; iron complex outermembrane recepter protein D y3948 hypothetical K02014 TC.FEV.OM; iron complex outermembrane recepter protein D y3404 putative OM receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D y3385 iutA; aerobactin OM receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D y3516 hasF; outer membrane channel protein K12340 tolC; outer membrane protein D y0704 putative outer membrane protein, efflux pump K18139 oprM; outer membrane protein, multidrug efflux system D y3127 hypothetical protein K07277 SAM50; outer membrane protein insertion porin family D y1356 putative dehydrogenase K17713 bamB; outer membrane protein assembly factor BamB D y1419 nlpB; lipoprotein-34 K07287 bamC; outer membrane protein assembly factor BamC D y0911 hypothetical protein K05807 bamD; outer membrane protein assembly factor BamD D y3076 smpA; small membrane protein A K06186 bamE; outer membrane protein assembly factor BamE D y0659 hypothetical protein K07278 tamA; translocation and assembly module TamA D y0661 hypothetical protein K09800 tamB; translocation and assembly module TamB D y3833 hypothetical K22110 kdgM; oligogalacturonate-specific porin family protein D y1880 hypothetical K22110 kdgM; oligogalacturonate-specific porin family protein D y0152 hypothetical protein K09774 lptA; lipopolysaccharide export system protein LptA D y0151 hypothetical protein K11719 lptC; lipopolysaccharide export system protein LptC D y3680 imp; organic solvent tolerance protein K04744 lptD; LPS-assembly protein D y1183 rlpB; rlpB lipoprotein K03643 lptE; LPS-assembly lipoprotein D y0596 hypothetical K19298 subB; subtilase cytotoxin, subunit B D y1191 corC; putative magnesium and cobalt efflux protein K06189 corC; hemolysin (HlyC) family protein D y2654 hypothetical protein K06518 cidA; holin-like protein D y2961 putative oligogalacturonide transporter K16210 togT; oligogalacturonide transporter D y2876 lysP; lysine-specific permease K11733 lysP; lysine-specific permease D y0765 aroP; aromatic amino acid transport protein K11734 aroP; aromatic amino acid transport protein AroP D y2564 aroP; aromatic amino acid permease K11734 aroP; aromatic amino acid transport protein AroP D y0982 proY; proline permease transport protein K11736 proY; proline-specific permease ProY D y2447 cycA; symporter of D-alanine, D-serine, and glycine K11737 cycA; D-serine/D-alanine/glycine transporter D y2374 ansP; L-asparagine permease K11738 ansP; L-asparagine permease D y4036 proY; aromatic amino acid permease K16234 hutT; histidine transporter D y2137 putative arginine/ornithine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease D y2988 putative symporter K03759 adiC; arginine:agmatine antiporter D y3523 putative transport K16263 yjeH; amino acid efflux transporter D y3050 putative transport system permease protein K16264 czcD; cobalt-zinc-cadmium efflux system protein D y0060 putative efflux permease protein K13283 fieF; ferrous-iron efflux pump FieF D y1049 acrB; acridine efflux pump K18138 acrB; multidrug efflux pump D y0703 acrB; acridine efflux pump K18138 acrB; multidrug efflux pump D y3393 acrF; integral transmembrane protein K18138 acrB; multidrug efflux pump D y1439 acrD; putative efflux pump K18324 acrD; multidrug efflux pump D y1385 hypothetical protein K07788 mdtB; multidrug efflux pump D y1384 hypothetical protein K07789 mdtC; multidrug efflux pump D y2000 emrE; methylviologen resistance K03297 emrE; small multidrug resistance pump D y0613 sugE; suppresses groEL, may be chaperone K11741 sugE; quaternary ammonium compound-resistance protein SugE D y2241 possible chaperone K11742 mdtI; spermidine export protein MdtI D y2242 possible chaperone K11743 mdtJ; spermidine export protein MdtJ D y1260 conserved hypothetical protein K08978 TC.BAT1; bacterial/archaeal transporter family protein D y1680 putative transmembrane subunit K11939 rhtA; inner membrane transporter RhtA D y0593 rhaT; rhamnose/proton symporter K02856 rhaT; L-rhamnose-H+ transport protein D y0394 rarD; hypothetical protein K05786 rarD; chloramphenicol-sensitive protein RarD D y1922 hypothetical K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE D y3426 gntP; high-affinity H+/gluconate symporter K16321 gntP; high-affinity gluconate transporter D y3875 gntT; high-affinity H+/gluconate symporter K06155 gntT; Gnt-I system high-affinity gluconate transporter D y3850 conserved hypothetical protein K03299 TC.GNTP; gluconate:H+ symporter, GntP family D y0605 dcuA; anaerobic C-4-dicarboxylate symporter K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA D y0901 putative anaerobic c4-dicarboxylate transport protein K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB D y2352 chaA; sodium-calcium/proton antiporter K07300 chaA; Ca2+:H+ antiporter D y0147 hypothetical protein K07301 yrbG; cation:H+ antiporter D y3862 pitA; low-affinity inorganic phosphate transport protein K16322 pit; low-affinity inorganic phosphate transporter D y0211 panF; sodium/pantothenate symporter K14392 panF; sodium/pantothenate symporter D y2453 putP; major sodium/proline symporter K11928 putP; sodium/proline symporter D y0508 putative sodium/proline symporter K14393 actP; cation/acetate symporter D y0511 gltP; glutamate-aspartate symport protein K11102 gltP; proton glutamate symport protein D y3836 dctA; C4-dicarboxylic acids symporter K11103 dctA; aerobic C4-dicarboxylate transport protein D y3595 Na/dicarboxylate symporter K07862 sstT; serine/threonine transporter D y0106 gltS; sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family D y3704 nhaA; Na+/H antiporter, pH dependent K03313 nhaA; Na+:H+ antiporter, NhaA family D y0238 hypothetical protein K24163 nhaK; monovalent cation/hydrogen antiporter D y3972 kefB; K+ efflux; NEM-activable K+/H+ antiporter K11747 kefB; glutathione-regulated potassium-efflux system protein KefB D y3971 putative NAD(P)H oxidoreductase K11748 kefG; glutathione-regulated potassium-efflux system ancillary protein KefG D y1086 rosB; putative potassium efflux protein K26735 KEA4_5_6; K+:H+ antiporter D y0468 trkH; potassium uptake protein K03498 trkH; trk/ktr system potassium uptake protein D y4020 trkA; potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein D y0107 putative transport protein, symporter K16345 xanP; xanthine permease XanP D y0239 putative transporter K06901 pbuG; adenine/guanine/hypoxanthine permease D y4121 putative membrane/transport protein, symporter K06901 pbuG; adenine/guanine/hypoxanthine permease D y1499 nupC; permease of transport system for 3 nucleosides K11535 nupC; nucleoside transport protein D y2979 tyrP; tyrosine-specific transport system protein K03834 tyrP; tyrosine-specific transport protein D y2900 mtr; tryptophan-specific transport protein K03835 mtr; tryptophan-specific transport protein D y2862 sdaC; probable serine transporter K03837 sdaC; serine transporter D y0537 putative transporter protein K26603 yhjV; inner membrane transport protein D y0800 putative channel transporter K03281 clcA; chloride channel protein, CIC family D y2112 putative chloride channel K03281 clcA; chloride channel protein, CIC family D y1245 putative nickel transport protein K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein D y2285 sulfate transporter K03321 TC.SULP; sulfate permease, SulP family D y1500 mntH; putative manganese transport system permease K03322 mntH; manganese transport protein D y0844 arsB; arsenical pump membrane protein K03893 arsB; arsenical pump membrane protein D y0370 wzxE; putative cytochrome K16693 wzxE; enterobacterial common antigen flippase D y2269 mviN; putative virulence factor K03980 murJ; putative peptidoglycan lipid II flippase D y0439 putative inner membrane permease K13936 mdcF; malonate transporter and related proteins D y1358 hypothetical K13936 mdcF; malonate transporter and related proteins D y0006 kup; low affinity potassium transport system K03549 kup; KUP system potassium uptake protein D y3305 hypothetical protein K06895 lysE; L-lysine exporter family protein LysE/ArgO D y0399 rhtB; putative homoserine/homoserine lactone efflux protein K05834 rhtB; homoserine/homoserine lactone efflux protein D y0398 threonine efflux protein K05835 rhtC; threonine efflux protein D y3691 hypothetical K05835 rhtC; threonine efflux protein D y0925 hypothetical protein K26605 azlC; branched chain amino acid efflux pump D y0924 hypothetical protein K26606 azlD; branched chain amino acid efflux pump D y0177 hypothetical protein K03468 aaeB; p-hydroxybenzoic acid efflux pump subunit AaeB D y3559 hypothetical K15547 mdtO; multidrug resistance protein MdtO D y1413 perM; putative permease K03548 perM; putative permease D y0408 hypothetical protein K09125 yhhQ; queuosine precursor transporter D y1899 hypothetical protein K05595 marC; multiple antibiotic resistance protein D y3627 ftsW; membrane protein K03588 ftsW; cell division protein FtsW D y2555 hypothetical protein K23242 mntP; manganese efflux pump family protein D y2370 putative integral membrane protein K07243 FTR; high-affinity iron transporter D y2452 putative cytochrome K07243 FTR; high-affinity iron transporter D y2451 hypothetical protein K07224 efeO; iron uptake system component EfeO D y2450 hypothetical protein K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-] D y2368 periplasmic protein K07230 p19; periplasmic iron binding protein D y1330 hypothetical K08970 rcnA; nickel/cobalt transporter (NicO) family protein D y2037 tonB; energy transducer K03832 tonB; periplasmic protein TonB D y0317 hasB; TonB-like protein K03832 tonB; periplasmic protein TonB D y3054 pal; peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein D y3056 tolA; membrane spanning protein K03646 tolA; colicin import membrane protein D y3055 tolB; periplasmic protein K03641 tolB; TolB protein D y0864 dmsA; anaerobic dimethyl sulfoxide reductase subunit A K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3] D y1519 putative oxidoreductase, major subunit K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3] D y0865 dmsB; anaerobic dimethyl sulfoxide reductase subunit B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B D y1518 dmsB; anaerobic dimethyl sulfoxide reductase subunit B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B D y0866 dmsC; anaerobic dimethyl sulfoxide reductase subunit C K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C D y1517 putative membrane anchor protein for oxidoreductase K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C D y3182 putative reductase K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-] D y0922 emrA; multidrug resistance secretion protein K03543 emrA; membrane fusion protein, multidrug efflux system D y3558 conserved hypothetical protein K15549 mdtN; membrane fusion protein, multidrug efflux system D y0316 hasE; secretion permease, Type I secretion system K12537 hasE; membrane fusion protein, type I secretion system D y0287 putative secretion permease K13408 cvaA; membrane fusion protein D y0702 acrA; acridine efflux pump K03585 acrA; membrane fusion protein, multidrug efflux system D y1050 acrA; acridine efflux pump K03585 acrA; membrane fusion protein, multidrug efflux system D y3038 hypothetical protein K25859 acrZ; accessory protein, multidrug efflux pump D y1386 putative membrane protein K07799 mdtA; membrane fusion protein, multidrug efflux system D y2814 putative membrane protein K13888 macA; membrane fusion protein, macrolide-specific efflux system D y1481 putative membrane protein, possible efflux component K13888 macA; membrane fusion protein, macrolide-specific efflux system D y0178 putative membrane protein K15548 aaeA; p-hydroxybenzoic acid efflux pump subunit AaeA D y3051 pnuC; nucleoside/purine/pyrimidine transporter K03811 pnuC; nicotinamide mononucleotide transporter D y3912 feoA; ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A D y3911 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D y3910 feoC; ferrous iron transport protein B K07490 feoC; ferrous iron transport protein C D y3860 hypothetical protein K06144 uspB; universal stress protein B D y1572 ccmF; cytochrome c-type biogenesis protein K02198 ccmF; cytochrome c-type biogenesis protein CcmF D y1820 mgtC; putative transport ATPase K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D y2001 putative transport ATPase K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D y2522 putative resistance protein, exporter K07245 pcoD; copper resistance protein D D y2523 hypothetical protein K07156 copC; copper resistance protein C D y2167 hypothetical protein K07274 mipA; MipA family protein C 02044 Secretion system [BR:ypk02044] D y3516 hasF; outer membrane channel protein K12340 tolC; outer membrane protein D y2090 putative N-terminal fragment of inner membrane permease K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB D y2093 putative inner membrane permease K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE D y0315 hasD; secretion ATPase, Type I secretion system K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D y0316 hasE; secretion permease, Type I secretion system K12537 hasE; membrane fusion protein, type I secretion system D y0287 putative secretion permease K13408 cvaA; membrane fusion protein D y0286 putative secretion ATPase K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D y3205 hypothetical K02452 gspC; general secretion pathway protein C D y3204 putative general secretion protein K02453 gspD; general secretion pathway protein D D y3203 putative general secretion protein K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D y3202 hofF; putative general protein secretion protein K02455 gspF; general secretion pathway protein F D y3201 hofG; putative general protein secretion protein K02456 gspG; general secretion pathway protein G D y3200 hypothetical K02457 gspH; general secretion pathway protein H D y3199 hypothetical K02459 gspJ; general secretion pathway protein J D y3198 hypothetical K02460 gspK; general secretion pathway protein K D y3197 putative L-like GSP protein K02461 gspL; general secretion pathway protein L D y3195 putative type IV prepilin peptidase K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-] D y3194 hypothetical K02465 gspS; general secretion pathway protein S D y1351 putative fimbrial biogenesis protein K02656 pilF; type IV pilus assembly protein PilF D y3326 putative protein transport K02669 pilT; twitching motility protein PilT D y3482 hypothetical K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D y3483 hypothetical K02279 cpaB; pilus assembly protein CpaB D y3484 hypothetical K02280 cpaC; pilus assembly protein CpaC D y3486 hypothetical K02282 cpaE; pilus assembly protein CpaE D y3487 tadA; putative secretion NTP hydrolase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D y3488 hypothetical K12510 tadB; tight adherence protein B D y3489 hypothetical K12511 tadC; tight adherence protein C D y3490 hypothetical K12512 tadD; tight adherence protein D D y3491 hypothetical K12513 tadE; tight adherence protein E D y3492 hypothetical K12514 tadF; tight adherence protein F D y3493 hypothetical K12515 tadG; tight adherence protein G D y3170 hypothetical K02679 ppdA; prepilin peptidase dependent protein A D y3169 hypothetical K02680 ppdB; prepilin peptidase dependent protein B D y3167 hypothetical K02681 ppdC; prepilin peptidase dependent protein C D y0761 ppdD; prelipin peptidase dependent protein K02682 ppdD; prepilin peptidase dependent protein D D y0760 hofB; putative integral membrane protein K02504 hofB; protein transport protein HofB D y0759 hofC; putative integral membrane protein K02505 hofC; protein transport protein HofC D y3925 hypothetical K12288 hofM; pilus assembly protein HofM D y3927 hypothetical K12289 hofN; pilus assembly protein HofN D y3928 hypothetical K12290 hofO; pilus assembly protein HofO D y3929 hypothetical K12291 hofP; pilus assembly protein HofP D y3932 hofQ; putative transport portein K02507 hofQ; protein transport protein HofQ D y3329 putative resistance protein K02221 yggT; YggT family protein D y1032 hypothetical K02237 comEA; competence protein ComEA D y2778 hypothetical protein K02238 comEC; competence protein ComEC D y0514 putative secretin K03219 yscC; type III secretion protein C D y0515 putative type III secretion system component K03220 yscD; type III secretion protein D D y0518 putative type III secretion system component K03221 yscF; type III secretion protein F D y0526 fliI; flagellum-specific ATP synthase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8] D y0529 putative type III secretion system component K03225 yscQ; type III secretion protein Q D y0530 putative type III secretion system component K03226 yscR; type III secretion protein R D y0531 putative type III secretion system component K03227 yscS; type III secretion protein S D y0532 putative type III secretion system component K03228 yscT; type III secretion protein T D y0533 putative type III secretion system component K03229 yscU; type III secretion protein U D y0525 putative type III secretion system component K03230 yscV; type III secretion protein V D y2518 flhA; flagellar biosynthesis protein K02400 flhA; flagellar biosynthesis protein FlhA D y3472 flhB; putative flagellar biosynthetic protein K02401 flhB; flagellar biosynthesis protein FlhB D y2519 flhB; flagellar biosynthesis protein K02401 flhB; flagellar biosynthesis protein FlhB D y3464 fliF; putative flagellar M ring protein K02409 fliF; flagellar M-ring protein FliF D y2476 fliF; basal-body MS (membrane and supramembrane)-ring and collar protein K02409 fliF; flagellar M-ring protein FliF D y3462 hypothetical K02411 fliH; flagellar assembly protein FliH D y2478 fliH; flagellar assembly protein K02411 fliH; flagellar assembly protein FliH D y3461 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D y2479 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D y3468 hypothetical K02417 fliN; flagellar motor switch protein FliN D y2484 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN D y2485 fliO; flagellar biosynthesis protein K02418 fliO; flagellar protein FliO/FliZ D y3469 fliP; flagellar biosynthesis protein K02419 fliP; flagellar biosynthesis protein FliP D y2486 fliP; flagellar biosynthesis protein K02419 fliP; flagellar biosynthesis protein FliP D y3470 hypothetical K02420 fliQ; flagellar biosynthesis protein FliQ D y2487 fliQ; flagellar biosynthesis protein K02420 fliQ; flagellar biosynthesis protein FliQ D y3471 fliR; putative flagellar biosynthetic protein K02421 fliR; flagellar biosynthesis protein FliR D y2488 fliR; flagellar biosynthesis protein K02421 fliR; flagellar biosynthesis protein FliR D y3275 dsbC; protein disulfide isomerase II K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D y3396 yapH; putative autotransporter adhesin K12678 aidA-I; autotransporter family porin D y2786 putative outer membrane protein K12342 yadB_C; adhesin YadB/C D y2785 hypothetical protein K12342 yadB_C; adhesin YadB/C D y2268 putative hemolysin activator protein K11017 shlB; hemolysin activation/secretion protein D y0021 hylA; hemolysin precursor K11016 shlA; hemolysin D y2267 putative hemolysin K11016 shlA; hemolysin D y1553 hypothetical K11891 impL; type VI secretion system protein ImpL D y2688 hypothetical K11891 impL; type VI secretion system protein ImpL D y3658 hypothetical K11891 impL; type VI secretion system protein ImpL D y0276 putative membrane protein K11892 impK; type VI secretion system protein ImpK D y2703 hypothetical K11892 impK; type VI secretion system protein ImpK D y3366 hypothetical K11892 impK; type VI secretion system protein ImpK D y3659 hypothetical K11892 impK; type VI secretion system protein ImpK D y3367 hypothetical K11893 impJ; type VI secretion system protein ImpJ D y1549 hypothetical K11893 impJ; type VI secretion system protein ImpJ D y0277 hypothetical K11893 impJ; type VI secretion system protein ImpJ D y2704 hypothetical K11893 impJ; type VI secretion system protein ImpJ D y3660 hypothetical K11893 impJ; type VI secretion system protein ImpJ D y1536 hypothetical K11895 impH; type VI secretion system protein ImpH D y0280 hypothetical K11895 impH; type VI secretion system protein ImpH D y2683 hypothetical K11895 impH; type VI secretion system protein ImpH D y3670 hypothetical K11895 impH; type VI secretion system protein ImpH D y0040 hypothetical K11896 impG; type VI secretion system protein ImpG D y1537 hypothetical K11896 impG; type VI secretion system protein ImpG D y2684 hypothetical K11896 impG; type VI secretion system protein ImpG D y3671 hypothetical K11896 impG; type VI secretion system protein ImpG D y1561 hypothetical K11897 impF; type VI secretion system protein ImpF D y3672 hypothetical K11897 impF; type VI secretion system protein ImpF D y1546 conserved hypothetical protein K11900 impC; type VI secretion system protein ImpC D y2705 hypothetical K11900 impC; type VI secretion system protein ImpC D y3368 hypothetical K11900 impC; type VI secretion system protein ImpC D y0038 hypothetical K11900 impC; type VI secretion system protein ImpC D y3674 hypothetical K11900 impC; type VI secretion system protein ImpC D y1545 hypothetical K11901 impB; type VI secretion system protein ImpB D y0037 conserved hypothetical protein K11901 impB; type VI secretion system protein ImpB D y2706 hypothetical K11901 impB; type VI secretion system protein ImpB D y3369 hypothetical K11901 impB; type VI secretion system protein ImpB D y3675 hypothetical K11901 impB; type VI secretion system protein ImpB D y1534 hypothetical K11902 impA; type VI secretion system protein ImpA D y3676 hypothetical K11902 impA; type VI secretion system protein ImpA D y0036 hemolysin co-regulated protein K11903 hcp; type VI secretion system secreted protein Hcp D y1547 hypothetical K11903 hcp; type VI secretion system secreted protein Hcp D y2700 hypothetical K11903 hcp; type VI secretion system secreted protein Hcp D y3673 hypothetical K11903 hcp; type VI secretion system secreted protein Hcp D y3363 hypothetical K11903 hcp; type VI secretion system secreted protein Hcp D y3430 hypothetical K11904 vgrG; type VI secretion system secreted protein VgrG D y2698 hypothetical K11904 vgrG; type VI secretion system secreted protein VgrG D y3361 hypothetical K11904 vgrG; type VI secretion system secreted protein VgrG D y1555 hypothetical K11904 vgrG; type VI secretion system secreted protein VgrG D y0257 VgrG-like protein K11904 vgrG; type VI secretion system secreted protein VgrG D y0268 VgrG-like protein K11904 vgrG; type VI secretion system secreted protein VgrG D y3668 hypothetical K11904 vgrG; type VI secretion system secreted protein VgrG D y2680 hypothetical K11905 K11905; type VI secretion system protein D y0039 hypothetical K11905 K11905; type VI secretion system protein D y0278 hypothetical K11906 vasD; type VI secretion system protein VasD D y2682 hypothetical K11906 vasD; type VI secretion system protein VasD D y1548 hypothetical K11906 vasD; type VI secretion system protein VasD D y3661 hypothetical K11906 vasD; type VI secretion system protein VasD D y2699 clpB; heat shock protein K11907 vasG; type VI secretion system protein VasG D y1538 putative Clp ATPase K11907 vasG; type VI secretion system protein VasG D y0275 clpB; heat shock protein K11907 vasG; type VI secretion system protein VasG D y3669 putative ATP-dependent protease K11907 vasG; type VI secretion system protein VasG D y3362 clpB; putative protease K11907 vasG; type VI secretion system protein VasG D y2687 hypothetical K11910 vasJ; type VI secretion system protein VasJ D y0272 hypothetical K11910 vasJ; type VI secretion system protein VasJ D y2679 hypothetical K11911 vasL; type VI secretion system protein VasL D y0279 hypothetical K11894 impI; type VI secretion system protein ImpI D y1560 hypothetical K11898 impE; type VI secretion system protein ImpE D y0273 hypothetical K11909 vasI; type VI secretion system protein VasI D y0352 fimbrial protein (precursor) K07345 fimA; major type 1 subunit fimbrin (pilin) D y2388 putative fimbrial precursor K07345 fimA; major type 1 subunit fimbrin (pilin) D y1872 putative fimbrial componenet K07345 fimA; major type 1 subunit fimbrin (pilin) D y1869 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D y1539 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D y0351 chaperone K07346 fimC; fimbrial chaperone protein D y1873 putative pilin chaperone K07346 fimC; fimbrial chaperone protein D y1859 putative pilus assembly chaperone K07346 fimC; fimbrial chaperone protein D y1858 hypothetical K07347 fimD; outer membrane usher protein D y0350 fimD; outer membrane usher protein FIMD precursor K07347 fimD; outer membrane usher protein D y1871 putative usher protein K07347 fimD; outer membrane usher protein D y2880 psaC; outer membrane usher protein K07347 fimD; outer membrane usher protein D y2390 putative outer membrane usher protein K07347 fimD; outer membrane usher protein D caf1A.pl caf1A; F1 capsule K07347 fimD; outer membrane usher protein D y1861 hypothetical K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D y1857 hypothetical K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D y1860 hypothetical K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D y1862 hypothetical K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D y3480 papC; putative outer membrane usher protein K12518 papC; outer membrane usher protein PapC D y3479 putative chaperone K12519 papD; chaperone protein PapD D y3617 secA; preprotein translocase; secretion protein K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D y0074 secB; protein export; molecular chaperone K03071 secB; preprotein translocase subunit SecB D y0993 secD; protein secretion, membrane protein K03072 secD; preprotein translocase subunit SecD D y0478 secE; preprotein translocase K03073 secE; preprotein translocase subunit SecE D y0994 secF; protein secretion, membrane protein K03074 secF; preprotein translocase subunit SecF D y0685 secG; protein export - membrane protein K03075 secG; preprotein translocase subunit SecG D y3618 hypothetical protein K13301 secM; secretion monitor D y4010 prlA; putative ATPase subunit of translocase K03076 secY; preprotein translocase subunit SecY D y0892 ffh; GTP-binding export factor K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D y0416 ftsY; cell division membrane protein K03110 ftsY; fused signal recognition particle receptor D y0992 hypothetical protein K03210 yajC; preprotein translocase subunit YajC D y4117 60 kDa inner-membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D y0452 hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA D y0453 hypothetical protein K03117 tatB; sec-independent protein translocase protein TatB D y0454 hypothetical protein K03118 tatC; sec-independent protein translocase protein TatC D y1170 hypothetical protein K03425 tatE; sec-independent protein translocase protein TatE C 02042 Bacterial toxins [BR:ypk02042] D y0596 hypothetical K19298 subB; subtilase cytotoxin, subunit B D y0191 tccC2; putative toxin subunit K11021 tccC; insecticidal toxin complex protein TccC D y0190 tccC1; putative toxin subunit K11021 tccC; insecticidal toxin complex protein TccC D y2020 putative component of insecticidal toxin complex K11021 tccC; insecticidal toxin complex protein TccC D y0657 putative membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D y0890 conserved hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D y0021 hylA; hemolysin precursor K11016 shlA; hemolysin D y2267 putative hemolysin K11016 shlA; hemolysin D y2268 putative hemolysin activator protein K11017 shlB; hemolysin activation/secretion protein D y3285 putative oxidoreductase K11068 hlyIII; hemolysin III D ymt.pl ymt; murine toxin K11009 ymt; murine toxin C 02022 Two-component system [BR:ypk02022] D y0979 phoR; positive and negative sensor protein for pho regulon K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D y0978 phoB; positive response regulator for pho regulon K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D y1793 phoQ; sensor protein PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D y1794 phoP; transcriptional regulatory protein K07660 phoP; two-component system, OmpR family, response regulator PhoP D y3917 envZ; protein histidine kinase/phosphatase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D y3916 ompR; response regulator (sensor, EnvZ) K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D y2140 rstB; sensor histidine protein kinase (RstA regulator) K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3] D y2139 rstA; response transcriptional regulatory protein (RstB sensor) K07661 rstA; two-component system, OmpR family, response regulator RstA D y0069 cpxA; probable sensor protein, histidine protein kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D y0067 cpxR; transcriptional regulator in 2-component system K07662 cpxR; two-component system, OmpR family, response regulator CpxR D y3279 creC; catabolite repression sensor kinase for PhoB K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3] D y3280 creB; catabolic regulation response regulator K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB D y1381 baeR; transcriptional response regulatory protein (sensor BaeS) K07664 baeR; two-component system, OmpR family, response regulator BaeR D y0676 basS; sensor protein for basR K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3] D y0677 basR; transcriptional regulatory protein, member of 2-component regulatory system K07771 basR; two-component system, OmpR family, response regulator BasR D y2308 putative hisitidine protein kinase sensor K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D y2307 putative 2-component transcriptional regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D y1262 kdpD; sensor for high-affinity potassium transport system K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D y1261 kdpE; regulator of kdp operon (transcriptional effector) K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D y0126 arcB; aerobic respiration sensor-response protein; histidine protein kinase/phosphatase K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3] D y3721 arcA; negative response regulator of genes in aerobic pathways, sensors, ArcB and CpxA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA D y1483 putative kinase sensor protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D y1482 cpxR; transcriptional regulator in 2-component system K02483 K02483; two-component system, OmpR family, response regulator D y2351 narX; nitrate/nitrite sensor K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] D y1441 narP; nitrate/nitrite response regulator K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP D y3820 uhpB; sensor protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D y4032 hypothetical K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D y4033 uhpA; response regulator K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA D y2588 uhpA; response regulator K20264 fusR; two-component system, NarL family, response regulator FusR D y2971 rcsC; sensor for ctr capsule biosynthesis K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3] D y2969 hypothetical K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3] D y2968 putative 2-component sensor protein K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3] D y2970 rcsB; positive response regulator for colanic capsule biosynthesis K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D y0808 barA; sensor-regulator, activates OmpR by phophorylation K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D y2443 uvrY; putative 2-component transcriptional regulator K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D y2387 putative Histidine protein kinase sensor K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D y2386 fimZ; fimbrial Z protein; probable signal transducer K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ D y3885 putative 2-component sensor protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D y0902 hypothetical protein K02477 K02477; two-component system, LytTR family, response regulator D y3805 glnL; histidine protein kinase sensor for GlnG regulator K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D y3806 glnG; response regulator for gln (sensor glnL) (nitrogen regulator I, NRI) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D y1313 putative 2-component sensor protein K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3] D y1315 putative 2-component transcriptional regulator K07715 glrR; two-component system, NtrC family, response regulator GlrR D y1827 cheA; sensory transducer kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D y1842 cheY; chemotaxis regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D y1841 cheB; protein methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D y0513 putative response regulator K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA D y0512 response regulator/transcription activator K14979 ssrB; two-component system, LuxR family, secretion system response regulator SsrB D y2148 hnr; Hnr protein K02485 rssB; two-component system, response regulator C 02035 Bacterial motility proteins [BR:ypk02035] D y1827 cheA; sensory transducer kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D y1828 cheW; positive regulator of CheA protein activity K03408 cheW; purine-binding chemotaxis protein CheW D y1839 cheR; protein glutamate methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D y1841 cheB; protein methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D y1842 cheY; chemotaxis regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D y1843 cheZ; chemotactic response; CheY protein phophatase K03414 cheZ; chemotaxis protein CheZ D y2958 putative methyl-accepting chemotaxis transmembrane protein K03406 mcp; methyl-accepting chemotaxis protein D y1672 putative chemotaxis methyl-accepting transducer K03406 mcp; methyl-accepting chemotaxis protein D y1837 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D y3190 putative methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D y4081 tsr; methyl-accepting chemotaxis protein II K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor D y1838 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor D y1805 aer; aerotaxis sensor receptor, flavoprotein K03776 aer; aerotaxis receptor D y3462 hypothetical K02411 fliH; flagellar assembly protein FliH D y2478 fliH; flagellar assembly protein K02411 fliH; flagellar assembly protein FliH D y3461 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D y2479 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D y2480 fliJ; flagellar fliJ protein K02413 fliJ; flagellar protein FliJ D y2485 fliO; flagellar biosynthesis protein K02418 fliO; flagellar protein FliO/FliZ D y3469 fliP; flagellar biosynthesis protein K02419 fliP; flagellar biosynthesis protein FliP D y2486 fliP; flagellar biosynthesis protein K02419 fliP; flagellar biosynthesis protein FliP D y3470 hypothetical K02420 fliQ; flagellar biosynthesis protein FliQ D y2487 fliQ; flagellar biosynthesis protein K02420 fliQ; flagellar biosynthesis protein FliQ D y3471 fliR; putative flagellar biosynthetic protein K02421 fliR; flagellar biosynthesis protein FliR D y2488 fliR; flagellar biosynthesis protein K02421 fliR; flagellar biosynthesis protein FliR D y2518 flhA; flagellar biosynthesis protein K02400 flhA; flagellar biosynthesis protein FlhA D y3472 flhB; putative flagellar biosynthetic protein K02401 flhB; flagellar biosynthesis protein FlhB D y2519 flhB; flagellar biosynthesis protein K02401 flhB; flagellar biosynthesis protein FlhB D y2517 flhE; flagellar protein K03516 flhE; flagellar protein FlhE D y3463 hypothetical K02410 fliG; flagellar motor switch protein FliG D y2477 fliG; flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG D y3467 hypothetical K02416 fliM; flagellar motor switch protein FliM D y2483 fliM; flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM D y3468 hypothetical K02417 fliN; flagellar motor switch protein FliN D y2484 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN D y3464 fliF; putative flagellar M ring protein K02409 fliF; flagellar M-ring protein FliF D y2476 fliF; basal-body MS (membrane and supramembrane)-ring and collar protein K02409 fliF; flagellar M-ring protein FliF D y3448 flgI; putative flagella basal body protein K02394 flgI; flagellar P-ring protein FlgI D y2503 flgI; homolog of Salmonella P-ring of flagella basal body K02394 flgI; flagellar P-ring protein FlgI D y3457 lfgA; putative flagellar protein K02386 flgA; flagellar basal body P-ring formation protein FlgA D y2511 flgA; putative flagella basal body P-ring formation protein K02386 flgA; flagellar basal body P-ring formation protein FlgA D y3449 flgH; putative flagellar l-ring protein K02393 flgH; flagellar L-ring protein FlgH D y2504 flgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein K02393 flgH; flagellar L-ring protein FlgH D y2482 fliL; flagellar biosynthesis K02415 fliL; flagellar protein FliL D y3465 hypothetical K02408 fliE; flagellar hook-basal body complex protein FliE D y2475 fliE; basal-body component K02408 fliE; flagellar hook-basal body complex protein FliE D y2481 fliK; flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D y3456 lfgB; putative flagellar rod protein K02387 flgB; flagellar basal-body rod protein FlgB D y2510 flgB; cell-proximal portion of basal-body rod protein K02387 flgB; flagellar basal-body rod protein FlgB D y3455 flgC; flagellar biosynthesis protein, cell-proximal portion of basal-body rod K02388 flgC; flagellar basal-body rod protein FlgC D y2509 flgC; cell-proximal portion of basal-body rod protein K02388 flgC; flagellar basal-body rod protein FlgC D y3453 lfgD; putative flagellar assembly protein K02389 flgD; flagellar basal-body rod modification protein FlgD D y2508 flgD; basal-body rod modification protein K02389 flgD; flagellar basal-body rod modification protein FlgD D y3451 flgF; putative flagellar rod protein K02391 flgF; flagellar basal-body rod protein FlgF D y2506 flgF; cell-proximal portion of basal-body rod protein K02391 flgF; flagellar basal-body rod protein FlgF D y3450 flgG; flagellar biosynthesis protein, cell-distal portion of basal-body rod K02392 flgG; flagellar basal-body rod protein FlgG D y2505 flgG; cell-distal portion of basal-body rod K02392 flgG; flagellar basal-body rod protein FlgG D y3447 hypothetical K02395 flgJ; peptidoglycan hydrolase FlgJ D y2502 flgJ; flagellar biosynthesis protein K02395 flgJ; peptidoglycan hydrolase FlgJ D y3452 flgE; putative flagellar hook protein K02390 flgE; flagellar hook protein FlgE D y2507 flgE; hook protein K02390 flgE; flagellar hook protein FlgE D y3446 hap1; putative flagellar hook-associated protein K02396 flgK; flagellar hook-associated protein 1 D y2501 flgK; flagellar biosynthesis protein, hook-filament junction protein 1 K02396 flgK; flagellar hook-associated protein 1 D y3445 hypothetical K02397 flgL; flagellar hook-associated protein 3 FlgL D y2499 flgL; flagellar biosynthesis protein, hook-filament junction protein K02397 flgL; flagellar hook-associated protein 3 FlgL D y2514 flgN; flagellar biosynthesis protein K02399 flgN; flagellar biosynthesis protein FlgN D y3459 hypothetical K02399 flgN; flagellar biosynthesis protein FlgN D y1403 hypothetical K18475 fliB; lysine-N-methylase [EC:2.1.1.-] D y1402 hypothetical K18475 fliB; lysine-N-methylase [EC:2.1.1.-] D y3441 lateral flagellin K02406 fliC; flagellin D y2465 putative flagellin K02406 fliC; flagellin D y2466 fliD; filament capping protein K02407 fliD; flagellar hook-associated protein 2 D y2467 fliS; repressor of class 3a and 3b operons (RflA activity) K02422 fliS; flagellar secretion chaperone FliS D y2468 fliT; repressor of class 3a and 3b operons (RflA activity) K02423 fliT; flagellar protein FliT D y1822 flhC; regulator of flagellar biosynthesis K02402 flhC; flagellar transcriptional activator FlhC D y2464 fliA; alternative sigma factor 28 K02405 fliA; RNA polymerase sigma factor FliA D y1823 motA; proton conductor component of motor K02556 motA; chemotaxis protein MotA D y1826 motB; lateral flagellar motor protein K02557 motB; chemotaxis protein MotB D y2460 fliY; putative periplasmic cysteine-binding ABC transport protein K02424 tcyA; L-cystine transport system substrate-binding protein D y2463 fliZ; hypothetical protein K02425 fliZ; regulator of sigma S factor FliZ D y3458 hypothetical K02398 flgM; negative regulator of flagellin synthesis FlgM D y2513 flgM; anti-FliA factor K02398 flgM; negative regulator of flagellin synthesis FlgM D y3326 putative protein transport K02669 pilT; twitching motility protein PilT D y1351 putative fimbrial biogenesis protein K02656 pilF; type IV pilus assembly protein PilF D y3482 hypothetical K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D y3483 hypothetical K02279 cpaB; pilus assembly protein CpaB D y3484 hypothetical K02280 cpaC; pilus assembly protein CpaC D y3486 hypothetical K02282 cpaE; pilus assembly protein CpaE D y3487 tadA; putative secretion NTP hydrolase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D y0352 fimbrial protein (precursor) K07345 fimA; major type 1 subunit fimbrin (pilin) D y2388 putative fimbrial precursor K07345 fimA; major type 1 subunit fimbrin (pilin) D y1872 putative fimbrial componenet K07345 fimA; major type 1 subunit fimbrin (pilin) D y1869 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D y1539 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D y0351 chaperone K07346 fimC; fimbrial chaperone protein D y1873 putative pilin chaperone K07346 fimC; fimbrial chaperone protein D y1859 putative pilus assembly chaperone K07346 fimC; fimbrial chaperone protein D y1858 hypothetical K07347 fimD; outer membrane usher protein D y0350 fimD; outer membrane usher protein FIMD precursor K07347 fimD; outer membrane usher protein D y1871 putative usher protein K07347 fimD; outer membrane usher protein D y2880 psaC; outer membrane usher protein K07347 fimD; outer membrane usher protein D y2390 putative outer membrane usher protein K07347 fimD; outer membrane usher protein D caf1A.pl caf1A; F1 capsule K07347 fimD; outer membrane usher protein D y1861 hypothetical K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D y1857 hypothetical K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D y1860 hypothetical K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D y1862 hypothetical K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:ypk04812] D y0202 mreB; regulator of ftsI, penicillin binding protein 3 K03569 mreB; rod shape-determining protein MreB and related proteins D y3621 ftsZ; tubulin-like GTP-binding protein and GTPase K03531 ftsZ; cell division protein FtsZ D y3622 ftsA; ATP-binding cell division protein K03590 ftsA; cell division protein FtsA D y2232 minC; cell division inhibitor K03610 minC; septum site-determining protein MinC D y2233 minD; cell division inhibitor K03609 minD; septum site-determining protein MinD D y2234 minE; cell division topological specificity factor K03608 minE; cell division topological specificity factor D parA.pl parA; partitioning protein K03496 parA; chromosome partitioning protein D Y1092.pl unknown K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D parB.pl parB; partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:ypk04147] D y1064 htpG; chaperone Hsp90, heat shock protein C 62.5 K04079 HSP90A; molecular chaperone HtpG D y0814 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D y2165 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D y3308 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D y1944 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40] D y2246 pykA; pyruvate kinase II, glucose stimulated K00873 PK; pyruvate kinase [EC:2.7.1.40] D y3951 ppiA; peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D y0988 putative peroxidase K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D y0609 mopA; GroEL protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D y3706 dnaK; chaperone Hsp70 K04043 dnaK; molecular chaperone DnaK D y0024 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D y1362 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D y0477 tufB; protein chain elongation factor EF-Tu K02358 tuf; elongation factor Tu D y3986 tufB; protein chain elongation factor EF-Tu K02358 tuf; elongation factor Tu D y1770 hypothetical protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D y2102 putative cytochrome oxidase K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D y3641 putative fatty acid biosynthesis protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D y2236 fadD; acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D y1065 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D y4040 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D y1059 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D y0312 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D y2595 argG; argininosuccinate synthetase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D y2996 dcd; putative aromatic-L-amino-acid decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105] D y0664 fbp; fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D y3045 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D y3886 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D y0047 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D y0876 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D y3804 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D y0459 hemB; 5-aminolevulinate dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D y2130 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D y3301 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D y2896 putative dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D y0502 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D y0769 lpdA; lipoamide dehydrogenase (NADH); component of 2-oxodehydrogenase and pyruvate complexes; L-protein of glycine cleavage complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D y0318 putative pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D y2244 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D y0052 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D y3048 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 02048 Prokaryotic defense system [BR:ypk02048] D y1722 hypothetical K15342 cas1; CRISP-associated protein Cas1 D y1723 hypothetical K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D y1724 hypothetical K19127 csy1; CRISPR-associated protein Csy1 D y1725 hypothetical K19128 csy2; CRISPR-associated protein Csy2 D y1726 hypothetical K19129 csy3; CRISPR-associated protein Csy3 D y1727 hypothetical K19130 csy4; CRISPR-associated endonuclease Csy4 [EC:3.1.-.-] D y3937 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D y2224 putative DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Y1085.pl unknown K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D y3797 hypothetical K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-] D y3796 hypothetical K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC D y0261 hypothetical K19048 symE; toxic protein SymE D y0241 hypothetical K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-] D y0240 putative DNA-damage inducible protein K07473 dinJ; DNA-damage-inducible protein J D y1511 hypothetical K18843 hicB; antitoxin HicB D y1046 hha; haemolysin expression modulating protein K05839 hha; haemolysin expression modulating protein D y1047 hypothetical protein K19162 tomB; hha toxicity modulator TomB D y1982 pspC; phage shock protein K03973 pspC; phage shock protein C D y1981 pspB; phage shock protein B K03970 pspB; phage shock protein B D y2474 hypothetical K07341 doc; death on curing protein D y3266 hypothetical protein K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA D y0739 hypothetical protein K19334 tabA; biofilm protein TabA D y3621 ftsZ; tubulin-like GTP-binding protein and GTPase K03531 ftsZ; cell division protein FtsZ D y0202 mreB; regulator of ftsI, penicillin binding protein 3 K03569 mreB; rod shape-determining protein MreB and related proteins D y3507 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D y3511 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D y1498 gltX; glutamate tRNA synthetase, catalytic subunit K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D y3281 hypothetical protein K19168 cptA; toxin CptA D y3282 hypothetical protein K09159 cptB; antitoxin CptB D y1334 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D y2182 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels [BR:ypk04040] C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:ypk04090] C 01504 Antimicrobial resistance genes [BR:ypk01504] D y4067 cmr; proton motive force efflux pump protein K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein D y2308 putative hisitidine protein kinase sensor K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D y2307 putative 2-component transcriptional regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D y1793 phoQ; sensor protein PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D y1794 phoP; transcriptional regulatory protein K07660 phoP; two-component system, OmpR family, response regulator PhoP D y0702 acrA; acridine efflux pump K03585 acrA; membrane fusion protein, multidrug efflux system D y1050 acrA; acridine efflux pump K03585 acrA; membrane fusion protein, multidrug efflux system D y1049 acrB; acridine efflux pump K18138 acrB; multidrug efflux pump D y0703 acrB; acridine efflux pump K18138 acrB; multidrug efflux pump D y3393 acrF; integral transmembrane protein K18138 acrB; multidrug efflux pump D y0704 putative outer membrane protein, efflux pump K18139 oprM; outer membrane protein, multidrug efflux system D y1094 putative transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D y3516 hasF; outer membrane channel protein K12340 tolC; outer membrane protein D y2759 putative outer membrane porin K09476 ompF; outer membrane pore protein F C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins [BR:ypk00536] D y1697 putative hemagglutinin-like secreted protein K15125 fhaB; filamentous hemagglutinin D y3579 putative filamentous hemagglutinin K15125 fhaB; filamentous hemagglutinin C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:ypk00537] D y2130 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins [BR:ypk03200] D y2215 putative phage endopeptidase Rz K14744 rzpD; prophage endopeptidase [EC:3.4.-.-] C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:ypk03100] D yt011 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D yt028 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D yt036 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D yt037 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D yt029 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D yt042 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D yt006 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D yt024 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D yt025 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D yt026 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D yt048 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D yt053 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D yt054 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D yt004 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D yt063 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D yt062 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D yt050 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D yt030 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D yt032 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D yt033 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D yt001 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D yt016 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D yt064 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D yt003 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D yt071 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D yt014 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D yt067 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D yt018 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D yt051 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D yt019 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D yt007 tRNA-His K14226 tRNA-His; tRNA His D yt010 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D yt027 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D yt020 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D yt034 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D yt022 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D yt008 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D yt070 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D yt049 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D yt041 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D yt061 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D yt060 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D yt052 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D yt059 tRNA-OTHER K14229 tRNA-Lys; tRNA Lys D yt031 tRNA-Met K14230 tRNA-Met; tRNA Met D yt035 tRNA-Met K14230 tRNA-Met; tRNA Met D yt069 tRNA-Met K14230 tRNA-Met; tRNA Met D yt021 tRNA-Met K14230 tRNA-Met; tRNA Met D yt065 tRNA-Met K14230 tRNA-Met; tRNA Met D yt066 tRNA-Met K14230 tRNA-Met; tRNA Met D yt017 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D yt068 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D yt009 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D yt072 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D yt056 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D yt023 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D yt058 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D yt046 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D yt047 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D yt055 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D yt002 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D yt015 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D yt012 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D yt057 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D yt005 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D yt013 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D yt045 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D yt038 tRNA-Val K14237 tRNA-Val; tRNA Val D yt039 tRNA-Val K14237 tRNA-Val; tRNA Val D yt040 tRNA-Val K14237 tRNA-Val; tRNA Val D yt043 tRNA-Val K14237 tRNA-Val; tRNA Val D yt044 tRNA-Val K14237 tRNA-Val; tRNA Val D yt073 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D yr001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D yr005 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D yr008 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D yr011 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D yr014 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D yr020 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D yr024 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D yr002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D yr006 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D yr009 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D yr012 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D yr015 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D yr019 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D yr023 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D yr003 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D yr004 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D yr007 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D yr010 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D yr013 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D yr016 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D yr018 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D yr022 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D yr017 4.5S RNA K01983 ffs; SRP RNA D ys001 RNase P, RNA component K01978 rnpB; M1 RNA D ys002 10Sa RNA (tmRNA) K15035 ssrA; transfer-messenger RNA D ys003 spot 42 RNA, inhibition of DNA synthesis K18527 spf; small regulatory RNA Spot 42 # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D y1645 putative oxidoreductase K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69] D y3501 hypothetical protein K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346] D y1125 hypothetical protein K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346] D y3101 putative aldose reductase K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346] D y2079 hypothetical K22025 denD; D-erythronate 2-dehydrogenase [EC:1.1.1.410] D y2613 putative oxidoreductase K08317 hcxA; hydroxycarboxylate dehydrogenase A [EC:1.1.1.-] D y1502 putative reductase K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-] D y1686 hypothetical K23271 eltD; erythritol/L-threitol dehydrogenase [EC:1.1.1.-] D y0838 putative dehydrogenase K23271 eltD; erythritol/L-threitol dehydrogenase [EC:1.1.1.-] D y0566 hypothetical K26080 E1.1.3.29; N-acylhexosamine oxidase [EC:1.1.3.29] D y3589 putative NADPH dehydrogenase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34] D y1742 solA; sarcosine oxidase-like protein K02846 solA; N-methyl-L-tryptophan oxidase [EC:1.5.3.-] D y0576 qor; quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D y3509 mdaB; modulator of drug activity B K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10] D y2010 acpD; acyl carrier protein phosphodiesterase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D y0658 msrA; peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D y2164 hypothetical protein K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D y0229 hypothetical protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D y0112 putative transferase K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7] D y0205 putative reductase K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-] D y0868 cybB; cytochrome b(561) K12262 cybB; superoxide oxidase [EC:1.10.3.17] D y0848 putative cytochrome C peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5] D y1417 bcp; bacterioferritin comigratory protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D y1990 tpx; thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D y1457 hypothetical protein K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-] D y3872 hypothetical protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D y2172 hypothetical K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D y1321 hmpA; dihydropteridine reductase K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17] D y1695 putative diogenase beta subunit K22444 cntB; carnitine monooxygenase subunit [EC:1.14.13.239] D y2524 ftn; cytoplasmic ferritin K02217 ftnA; ferritin [EC:1.16.3.2] D y0777 hypothetical protein K14588 cueO; cuproxidase [EC:1.16.3.4] D y0049 fpr; ferredoxin-NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D y1411 putative oxidoreductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D y0732 nrdG; anaerobic ribonucleotide reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4] D y2792 pflA; pyruvate formate lyase activating enzyme 1 K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D y2820 putative enzyme K11933 hcr; NADH oxidoreductase Hcr [EC:1.-.-.-] D y0832 pcm; L-isoaspartate protein carboxylmethyltransferase type II K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D y1947 cfa; cyclopropane fatty acyl phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D y1678 putative enzyme K00598 tam; trans-aconitate 2-methyltransferase [EC:2.1.1.144] D y2361 tehB; tellurite resistance K16868 tehB; tellurite methyltransferase [EC:2.1.1.265] D y0547 hypothetical K21936 chuW; anaerobilin synthase [EC:2.1.1.342] D y1190 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D y0708 hypothetical protein K03824 yhbS; putative acetyltransferase [EC:2.3.1.-] D y4092 hypothetical protein K03826 yiaC; putative acetyltransferase [EC:2.3.1.-] D y0742 hypothetical K03828 yjgM; putative acetyltransferase [EC:2.3.1.-] D y0354 glutamine cyclotransferase K22757 QCT; glutaminyl-peptide cyclotransferase [EC:2.3.2.5] D y2806 aat; leucyl, phenylalanyl-tRNA-protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D y3568 hypothetical K21298 E2.4.1.333; 1,2-beta-oligoglucan phosphorylase [EC:2.4.1.333] D y1715 hypothetical K20885 K20885; beta-1,2-mannobiose phosphorylase / 1,2-beta-oligomannan phosphorylase [EC:2.4.1.339 2.4.1.340] D y0918 hypothetical protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] D y3172 lgt; phosphatidylglycerol-prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D y0957 hypothetical protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D y2952 hypothetical protein K21948 otnK; 3-dehydrotetronate 4-kinase [EC:2.7.1.217] D y1929 hypothetical protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D y3525 glnE; adenylylating enzyme for glutamine synthetase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D y0018 aceK; isocitrate dehydrogenase kinase/phosphatase K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-] D y3059 hypothetical protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D y2052 putative enzyme K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D y1582 hypothetical protein K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D y2909 rtn; hypothetical protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52] D y3832 hypothetical protein K26149 K26149; c-di-GMP phosphodiesterase [EC:3.1.4.52] D y3227 putative sulfatase K01138 K01138; uncharacterized sulfatase [EC:3.1.6.-] D y1434 putative sulfatase K01138 K01138; uncharacterized sulfatase [EC:3.1.6.-] D y3215 hypothetical K01138 K01138; uncharacterized sulfatase [EC:3.1.6.-] D y3316 endA; DNA-specific endonuclease I K01150 endA; deoxyribonuclease I [EC:3.1.21.1] D y1766 hypothetical protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D y3745 hypothetical protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D y0455 hypothetical protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D y1212 hypothetical protein K01175 ybfF; esterase [EC:3.1.-.-] D y0964 hypothetical protein K11750 frsA; esterase FrsA [EC:3.1.-.-] D y3831 putative endoglucanase K20542 bcsZ; endoglucanase [EC:3.2.1.4] D y2216 hypothetical K01185 E3.2.1.17; lysozyme [EC:3.2.1.17] D y3238 hypothetical K01224 E3.2.1.89; arabinogalactan endo-1,4-beta-galactosidase [EC:3.2.1.89] D y1845 putative regulator K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D y4023 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D y2591 hypothetical K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D y1255 hypothetical protein K03478 chbG; chitin disaccharide deacetylase [EC:3.5.1.105] D y2529 hypothetical protein K09900 E3.5.1.135; N4-acetylcytidine amidohydrolase [EC:3.5.1.135] D y0163 hypothetical protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D y3527 hypothetical protein K18446 ygiF; triphosphatase [EC:3.6.1.25] D y1036 cof; hypothetical protein K11938 cof; HMP-PP phosphatase [EC:3.6.1.-] D y1448 hypothetical protein K12945 nudK; GDP-mannose pyrophosphatase NudK [EC:3.6.1.-] D y1751 hypothetical protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-] D y0005 putative 2-component regulator K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D y2951 putative epimerase/aldolase K22130 otnC; 3-dehydro-4-phosphotetronate decarboxylase [EC:4.1.1.104] D y2074 mipB; putative transaldolase K08313 fsaA; fructose-6-phosphate aldolase 1 [EC:4.1.2.-] D y0625 hypothetical protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D y3211 putative chondroitin lyase K08961 K08961; chondroitin-sulfate-ABC endolyase/exolyase [EC:4.2.2.20 4.2.2.21] D y3156 hypothetical protein K01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-] D y2448 conserved hypothetical protein K17948 nanM; N-acetylneuraminate epimerase [EC:5.1.3.24] D y0583 hypothetical protein K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32] D y2949 hypothetical protein K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35] D y0665 putative ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45] D y2083 hypothetical protein K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2] D y2085 putative membrane protein K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2] D y2086 hypothetical protein K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D y0951 nqrA; Na-translocating NADH ubiquinone oxidoreductase:subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1] D y0952 nqrB; Na-translocating NADH ubiquinone oxidoreductase:subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1] D y0953 nqrC; Na-translocating NADH ubiquinone oxidoreductase, gamma chain K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1] D y0954 nqrD; Na-translocating NADH ubiquinone oxidoreductase K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1] D y0955 hypothetical protein K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1] D y2376 putative oxidoreductase K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1] D y0956 nqrF; Na-translocating NADH ubiquinone oxidoreductase, beta chain K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1] D y0410 zntA; zinc, lead, cadmium, and mercury transporting ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D y1821 mgtA; Mg2+ transport ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14] C 99981 Carbohydrate metabolism D y0792 sfsA; probable regulator for maltose metabolism K06206 sfsA; sugar fermentation stimulation protein A C 99982 Energy metabolism D y4079 fdhD; formate dehydrogenase formation protein K02379 fdhD; FdhD protein D y1340 fdx; [2FE-2S] ferredoxin, electron carrer protein K04755 fdx; ferredoxin, 2Fe-2S D y2976 hypothetical protein K11107 yfaE; ferredoxin D y2082 hypothetical protein K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G D y2081 hypothetical protein K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E D y2087 hypothetical protein K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A D y0600 hydN; electron transport protein K05796 hydN; electron transport protein HydN D y0001 mioC; initiation of chromosome replication K06205 mioC; MioC protein D y3277 fldB; flavodoxin 2 K03840 fldB; flavodoxin II D y1335 hypothetical protein K04488 iscU; nitrogen fixation protein NifU and related proteins D y0169 cybC; cytochrome b(562) K15536 cybC; soluble cytochrome b562 D y0869 cybC; cytochrome b(562) K15536 cybC; soluble cytochrome b562 D y1443 napD; hypothetical protein K02570 napD; periplasmic nitrate reductase NapD D y1442 napF; ferredoxin-type protein K02572 napF; ferredoxin-type protein NapF D y1209 fldA; flavodoxin 1 K03839 fldA; flavodoxin I D y1447 napC; cytochrome c-type protein K02569 napC; cytochrome c-type protein NapC C 99983 Lipid metabolism D y0639 aidB; putative acyl coenzyme A dehydrogenase K09456 aidB; putative acyl-CoA dehydrogenase C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D y1490 cysZ; cysZ protein K06203 cysZ; CysZ protein D y3118 hypothetical protein K08234 yaeR; glyoxylase I family protein D y1992 putative carboxypeptidase K14054 mpaA; murein peptide amidase A D y3327 hypothetical protein K06997 yggS; PLP dependent protein C 99986 Glycan metabolism D y2066 hypothetical protein K08992 lapA; lipopolysaccharide assembly protein A D y2067 putative heat shock protein K19804 lapB; lipopolysaccharide assembly protein B D y2791 hypothetical K07270 K07270; glycosyl transferase, family 25 C 99987 Cofactor metabolism D y0378 hemY; hemY protein K02498 hemY; HemY protein D y0451 hypothetical protein K03688 ubiB; ubiquinone biosynthesis protein D y0450 hypothetical protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ D y3522 hypothetical protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK D y0707 hypothetical protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT D y3816 mobB; molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein D y3402 hypothetical K12942 abgT; aminobenzoyl-glutamate transport protein C 99988 Secondary metabolism D y3504 sufI; suppressor of ftsI K04753 sufI; suppressor of ftsI C 99999 Others D y3612 hypothetical protein K15977 K15977; putative oxidoreductase D y0917 hypothetical protein K09181 yfiQ; acetyltransferase B B 09192 Unclassified: genetic information processing C 99973 Transcription D y0173 hypothetical protein K03623 yhcO; ribonuclease inhibitor D y0223 cspI; cold shock-like protein K03704 cspA; cold shock protein D y0224 cspI; cold shock-like protein K03704 cspA; cold shock protein D y1166 cspE; cold shock protein K03704 cspA; cold shock protein D y1230 cspG; homolog of Salmonella cold shock protein K03704 cspA; cold shock protein D y2774 cspE; cold shock protein K03704 cspA; cold shock protein D y0492 putative transcriptional regulator K07740 rsd; regulator of sigma D D y1041 glnK; nitrogen regulatory protein P-II 2 K04752 glnK; nitrogen regulatory protein P-II 2 D y3913 hypothetical protein K06959 tex; protein Tex C 99974 Translation C 99975 Protein processing D y2003 hslJ; heat shock protein HslJ K03668 hslJ; heat shock protein HslJ D y2810 hypothetical protein K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D y1026 tig; trigger factor protein K03545 tig; trigger factor D y0206 hypothetical protein K17247 msrQ; methionine sulfoxide reductase heme-binding subunit D y4075 fdhE; formate dehydrogenase formation protein K02380 fdhE; FdhE protein D y1240 ureE; urease accessory protein K03187 ureE; urease accessory protein D y1241 ureF; urease accessory protein K03188 ureF; urease accessory protein D y1242 ureG; urease accessory protein K03189 ureG; urease accessory protein D y3079 smpB; small protein B K03664 smpB; SsrA-binding protein D y1225 nrdH; glutaredoxin-like protein K06191 nrdH; glutaredoxin-like protein NrdH D y0334 putative 2-component regulator K07391 comM; magnesium chelatase family protein D y3548 hypothetical K07396 K07396; putative protein-disulfide isomerase D y3189 hypothetical K07396 K07396; putative protein-disulfide isomerase D y3957 hypothetical protein K07397 yhfA; putative redox protein D y3903 hypothetical protein K07400 nfuA; Fe/S biogenesis protein NfuA D y0516 putative type III secretion system component K18984 ssaE; secretion system chaperone SsaE C 99976 Replication and repair D y1045 hypothetical protein K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein D y3151 exo; 5'-3' exonuclease K01146 xni; protein Xni D y0092 radC; DNA repair protein K03630 radC; DNA repair protein RadC D y0448 putative alpha helix chain K09760 rmuC; DNA recombination protein RmuC D y2817 hypothetical protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family D y0119 hypothetical protein K07460 yraN; putative endonuclease D y0709 hypothetical protein K07461 K07461; putative endonuclease D y4024 smf1; hypothetical protein K04096 smf; DNA processing protein D y2797 putative polynucleotide enzyme K07478 ycaJ; putative ATPase D y4026 putative DNA topoisomerase K07479 yrdD; putative DNA topoisomerase D y3265 putative phage DNA primase K06919 K06919; putative DNA primase/helicase D y3350 putative transposase K07480 insB; insertion element IS1 protein InsB D y3356 putative transposase K07480 insB; insertion element IS1 protein InsB D y0595 putative transposase K07480 insB; insertion element IS1 protein InsB D y3896 putative transposase K07483 K07483; transposase D y0306 putative transposase K07483 K07483; transposase D y3387 putative transposase K07483 K07483; transposase D y4065 putative transposase K07483 K07483; transposase D y0282 putative transposase K07483 K07483; transposase D y4107 putative transposase K07483 K07483; transposase D Y1063.pl transposase K07486 K07486; transposase D y3351 putative transposase K07489 K07489; transposase D y1204 putative transposase K07491 rayT; REP-associated tyrosine transposase D y0225 putative transposase K07491 rayT; REP-associated tyrosine transposase D y0377 putative transposase K07491 rayT; REP-associated tyrosine transposase D y0420 putative transposase K07491 rayT; REP-associated tyrosine transposase D y0466 putative transposase K07491 rayT; REP-associated tyrosine transposase D y0486 putative transposase K07491 rayT; REP-associated tyrosine transposase D y0648 putative transposase K07491 rayT; REP-associated tyrosine transposase D y0770 putative transposase K07491 rayT; REP-associated tyrosine transposase D y2965 tnp; putative transposase K07491 rayT; REP-associated tyrosine transposase D y3017 putative transposase K07491 rayT; REP-associated tyrosine transposase D y3080 putative transposase K07491 rayT; REP-associated tyrosine transposase D y3145 putative transposase K07491 rayT; REP-associated tyrosine transposase D y3481 putative transposase K07491 rayT; REP-associated tyrosine transposase D y1007 putative transposase K07491 rayT; REP-associated tyrosine transposase D y1108 putative transposase K07491 rayT; REP-associated tyrosine transposase D y1142 putative transposase K07491 rayT; REP-associated tyrosine transposase D y1302 putative transposase K07491 rayT; REP-associated tyrosine transposase D y1312 putative transposase K07491 rayT; REP-associated tyrosine transposase D y1364 putative transposase K07491 rayT; REP-associated tyrosine transposase D y1409 putative transposase K07491 rayT; REP-associated tyrosine transposase D y0860 putative transposase K07491 rayT; REP-associated tyrosine transposase D y0889 putative transposase K07491 rayT; REP-associated tyrosine transposase D y0898 putative transposase K07491 rayT; REP-associated tyrosine transposase D y0908 putative transposase K07491 rayT; REP-associated tyrosine transposase D y0995 putative transposase K07491 rayT; REP-associated tyrosine transposase D y1497 putative transposase K07491 rayT; REP-associated tyrosine transposase D y1761 putative transposase K07491 rayT; REP-associated tyrosine transposase D y1768 putative transposase K07491 rayT; REP-associated tyrosine transposase D Y1011.pl transposase K07491 rayT; REP-associated tyrosine transposase D y1420 putative transposase K07491 rayT; REP-associated tyrosine transposase D y2764 putative transposase K07491 rayT; REP-associated tyrosine transposase D y2808 putative transposase K07491 rayT; REP-associated tyrosine transposase D y2921 tnp; putative transposase K07491 rayT; REP-associated tyrosine transposase D y3596 tnpA; putative transposase K07491 rayT; REP-associated tyrosine transposase D y3638 putative transposase K07491 rayT; REP-associated tyrosine transposase D y3644 putative transposase K07491 rayT; REP-associated tyrosine transposase D y3687 putative transposase K07491 rayT; REP-associated tyrosine transposase D y3695 putative transposase K07491 rayT; REP-associated tyrosine transposase D y3810 putative transposase K07491 rayT; REP-associated tyrosine transposase D y3861 tnpA; putative transposase K07491 rayT; REP-associated tyrosine transposase D y3987 putative transposase K07491 rayT; REP-associated tyrosine transposase D y0138 putative transposase K07491 rayT; REP-associated tyrosine transposase D y1484 putative transposase K07491 rayT; REP-associated tyrosine transposase D y1978 putative transposase K07491 rayT; REP-associated tyrosine transposase D y1989 putative transposase K07491 rayT; REP-associated tyrosine transposase D y2649 putative transposase K07491 rayT; REP-associated tyrosine transposase D y2736 putative transposase K07491 rayT; REP-associated tyrosine transposase D y2745 putative transposase K07491 rayT; REP-associated tyrosine transposase D Y1062.pl transposase K07493 K07493; putative transposase D y0353 putative transposase K07493 K07493; putative transposase D y1132 putative transposase K07493 K07493; putative transposase D y1371 putative transposase K07493 K07493; putative transposase D y1542 putative transposase K07493 K07493; putative transposase D y1616 putative transposase K07493 K07493; putative transposase D y1743 putative transposase K07493 K07493; putative transposase D y1748 putative transposase K07493 K07493; putative transposase D y1781 putative transposase K07493 K07493; putative transposase D y1889 putative transposase K07493 K07493; putative transposase D y2151 putative transposase K07493 K07493; putative transposase D y2184 putative transposase K07493 K07493; putative transposase D y2210 putative transposase K07493 K07493; putative transposase D y2323 putative transposase K07493 K07493; putative transposase D y2580 putative transposase K07493 K07493; putative transposase D y2606 putative transposase K07493 K07493; putative transposase D y2675 putative transposase K07493 K07493; putative transposase D y3817 putative transposase K07493 K07493; putative transposase D y0503 putative transposase K07497 K07497; putative transposase D y1214 putative transposase K07497 K07497; putative transposase D y0504 putative transposase K07497 K07497; putative transposase D y3793 putative transposase K07497 K07497; putative transposase D y4108 putative transposase K07497 K07497; putative transposase D y2299 putative recombinase K07497 K07497; putative transposase D y3895 putative transposase K07497 K07497; putative transposase D y0693 putative transposase K07497 K07497; putative transposase D y3388 putative transposase K07497 K07497; putative transposase D y3439 putative transposase K07497 K07497; putative transposase D y4066 putative transposase K07497 K07497; putative transposase D y2436 putative transposase K07497 K07497; putative transposase D y2227 putative transposase K14059 int; integrase C 99979 Viral proteins C 99998 Others D y1980 pspA; phage shock protein A K03969 pspA; phage shock protein A D y1983 pspD; phage shock protein K03971 pspD; phage shock protein D D y1061 hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D y0375 putative amino acid/amine symporter K03293 TC.AAT; amino acid transporter, AAT family D y1693 putative quarternary ammonium transport protein K03451 TC.BCT; betaine/carnitine transporter, BCCT family D y1971 putative transport protein K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D y1478 putative permease K03307 TC.SSS; solute:Na+ symporter, SSS family D y0981 brnQ; branched chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family D y3093 putative permease K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family D y3744 putative transport system permease protein K03317 TC.CNT; concentrative nucleoside transporter, CNT family D y0056 putative membrane pump protein K03319 TC.DASS; divalent anion:Na+ symporter, DASS family D y4100 putative membrane/transport protein K07085 K07085; putative transport protein D y2857 putative transport protein K07085 K07085; putative transport protein C 99978 Cell growth D y2040 hypothetical protein K06190 ispZ; intracellular septation protein D y0407 hypothetical protein K27311 dcrB; inner membrane lipoprotein DcrB D y0652 hypothetical protein K07322 ytfE; regulator of cell morphogenesis and NO signaling D y2175 putative sporulation protein K06415 spoVR; stage V sporulation protein R D y0078 putative membrane protein K22719 envC; murein hydrolase activator C 99993 Cell motility D y1772 hypothetical protein K07337 K07337; penicillin-binding protein activator D y2733 hypothetical protein K07343 tfoX; DNA transformation protein and related proteins D y1541 ecpD; probable pilin chaperone K15540 ecpD; chaperone protein EcpD D y1870 ecpD; probable pilin chaperone K15540 ecpD; chaperone protein EcpD D y3146 syd; syd protein K15723 syd; SecY interacting protein Syd C 99995 Signaling proteins D y0764 ampE; regulates ampC K03807 ampE; AmpE protein D y0556 terA; putative tellurium resistance protein K05792 terA; tellurite resistance protein TerA D y0559 terD; putative tellurium resistance protein K05795 terD; tellurium resistance protein TerD D y0560 terE; putative tellurium resistance protein K05795 terD; tellurium resistance protein TerD D y0555 terZ; putative tellurium resistance protein K05791 terZ; tellurium resistance protein TerZ D y1866 proQ; putative transport system effector K03607 proQ; ProP effector D y3859 uspA; universal stress protein K06149 uspA; universal stress protein A D y2133 hypothetical protein K14055 uspE; universal stress protein E D y2076 cstA; carbon starvation protein K06200 cstA; carbon starvation protein D y0446 cstA; carbon starvation protein K06200 cstA; carbon starvation protein D y3803 putative GTP-binding factor K06207 typA; GTP-binding protein D y1194 putative ATP-binding protein in pho regulon K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D y2353 phoH; PhoB-dependent, ATP-binding pho regulon component K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D y2168 hypothetical protein K07180 prkA; serine protein kinase D y3528 hypothetical protein K07184 ygiM; SH3 domain protein D y3739 smp; hypothetical protein K07186 smp; membrane protein D y1016 hypothetical protein K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins D y2798 lolA; periplasmic protein K03634 lolA; outer membrane lipoprotein carrier protein D y2292 hemM; putative glutamyl-tRNA dehydrogenase K02494 lolB; outer membrane lipoprotein LolB D y1576 vacJ; lipoprotein precursor K04754 mlaA; phospholipid-binding lipoprotein MlaA D y0363 wzzE; putative transport protein K05790 wzzE; lipopolysaccharide biosynthesis protein WzzE D y1962 slyB; putative outer membrane protein K06077 slyB; outer membrane lipoprotein SlyB D y3126 ompH; automembrane protein H K06142 hlpA; outer membrane protein D y0833 nlpD; lipoprotein K06194 nlpD; lipoprotein NlpD D y0695 putative control proteins K05803 nlpI; lipoprotein NlpI D y2044 putative outer membrane protein K07275 ompW; outer membrane protein D y0899 hypothetical protein K07283 ydiY; putative salt-induced outer membrane protein D y2237 putative outer membrane protein K07285 slp; outer membrane lipoprotein D y1024 putative polymerase/proteinase K07286 yajG; uncharacterized lipoprotein D y2644 asmA; suppressor of ompF assembly mutants K07289 asmA; AsmA protein D y3842 hypothetical protein K07290 yhjG; AsmA family protein D y1095 hypothetical protein K07340 ybbJ; inner membrane protein D y2670 hypothetical K02005 ABC.CD.TX; HlyD family secretion protein D y1739 putative transport protein K11744 tqsA; AI-2 transport protein TqsA D y2071 osmB; osmotically inducible lipoprotein K04062 osmB; osmotically inducible lipoprotein OsmB D y3278 creD; inner membrane protein K06143 creD; inner membrane protein D y1571 ccmE; possible subunit of a heme lyase K02197 ccmE; cytochrome c-type biogenesis protein CcmE D y1574 putative cytochrome c-type biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH D y1352 putative membrane protein K15539 rodZ; cytoskeleton protein RodZ D y0179 hypothetical protein K21695 aaeX; protein AaeX D y3588 hdeD; hypothetical protein K21908 hdeD; membrane protein HdeD C 99994 Others D y4127 phoU; negative regulator for pho regulon K02039 phoU; phosphate transport system protein D y0557 terB; putative tellurium resistance protein K05793 terB; tellurite resistance protein TerB D y0558 terC; putative tellurium resistance protein K05794 terC; tellurite resistance protein TerC D y0604 cutA; divalent cation tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein D y2263 cutC; putative copper homeostasis protein K06201 cutC; copper homeostasis protein D y0725 phnK; ATP-binding component of phosphonate ABC transporter K05781 phnK; putative phosphonate transport system ATP-binding protein D y3684 apaG; hypothetical protein K06195 apaG; ApaG protein D y0383 cyaY; hypothetical protein K06202 cyaY; iron-sulfur cluster assembly protein CyaY D y0542 hmuS; hemin uptake system component K07225 hmuS; putative hemin transport protein D y0546 orfX protein in hemin uptake locus K07227 chuX; heme iron utilization protein D y1052 hypothetical protein K06039 ychN; uncharacterized protein involved in oxidation of intracellular sulfur B B 09194 Poorly characterized C 99996 General function prediction only D y1604 cvpA; membrane protein K03558 cvpA; membrane protein required for colicin V production D y2747 pqiB; paraquat-inducible protein B K06192 pqiB; paraquat-inducible protein B D y2270 putative virulence factor K03810 mviM; virulence factor D y0915 hypothetical protein K05811 yfiM; putative lipoprotein D y3748 osmY; hyperosmotically inducible periplasmic protein K04065 osmY; hyperosmotically inducible periplasmic protein D y2275 hypothetical protein K04477 ycdX; putative hydrolase D y1282 putative formate acetyltransferase K06866 grcA; autonomous glycyl radical cofactor D y0801 hypothetical protein K15724 erpA; iron-sulfur cluster insertion protein D y1934 hypothetical protein K05997 sufA; Fe-S cluster assembly protein SufA D y1935 hypothetical protein K09014 sufB; Fe-S cluster assembly protein SufB D y1937 hypothetical protein K09015 sufD; Fe-S cluster assembly protein SufD D y1879 hypothetical protein K07038 K07038; inner membrane protein D y1437 hypothetical protein K07038 K07038; inner membrane protein D y3801 rbn; tRNA processing exoribonuclease BN K07058 K07058; membrane protein D y3844 hypothetical protein K07058 K07058; membrane protein D y0607 hypothetical protein K07113 fxsA; UPF0716 protein FxsA D y1939 hypothetical protein K02426 sufE; cysteine desulfuration protein SufE D y3157 hypothetical protein K02426 sufE; cysteine desulfuration protein SufE D y1738 hypothetical protein K07146 K07146; UPF0176 protein D y1798 hypothetical protein K07153 hflD; high frequency lysogenization protein D y2642 ysuF; putative iron reductase K13255 fhuF; ferric iron reductase protein FhuF D y1565 hypothetical K03744 lemA; LemA protein D y3976 slyX; host factor for lysis of phiX174 infection K03745 slyX; SlyX protein D y4025 smg; hypothetical protein K03747 smg; Smg protein D y3722 creA; hypothetical protein K05805 creA; CreA protein D y3315 sprT; hypothetical protein K02742 sprT; SprT protein D y1603 dedD; putative lipoprotein K03749 dedD; DedD protein D y3936 damX; putative membrane protein K03112 damX; DamX protein D y2659 sanA; putative oxidoreductase K03748 sanA; SanA protein D y1600 dedA; hypothetical protein K03975 dedA; membrane-associated protein D y2749 pqiA; paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A D y1864 hypothetical protein K03808 pqiA; paraquat-inducible protein A D y1657 elaB; hypothetical protein K05594 elaB; ElaB protein D y1985 hypothetical protein K08990 ycjF; putative membrane protein D y0414 hypothetical protein K08993 yhhL; putative membrane protein D y1144 hypothetical K08996 yagU; putative membrane protein D y2149 hypothetical protein K09858 K09858; SEC-C motif domain protein D y1044 glycoprotein/polysaccharide metabolism K09914 K09914; putative lipoprotein D y0033 malM; periplasmic protein of mal regulon K05775 malM; maltose operon periplasmic protein D y0025 hypothetical protein K13256 psiE; protein PsiE D y1563 phnA; hypothetical protein K06193 phnA; protein PhnA C 99997 Function unknown D y3394 senA; putative enterotoxin-like protein K06867 K06867; uncharacterized protein D y0851 hypothetical K06867 K06867; uncharacterized protein D y1285 yplB; putative accessory protein for YplA K06867 K06867; uncharacterized protein D y2672 putative arylsulfatase activating enzyme K06871 K06871; uncharacterized protein D y1436 putative enzyme K06871 K06871; uncharacterized protein D y3226 aslB; putative arylsulfatase regulator K06871 K06871; uncharacterized protein D y1522 hypothetical K06887 K06887; uncharacterized protein D y1136 hypothetical K06887 K06887; uncharacterized protein D y1365 hypothetical K06887 K06887; uncharacterized protein D y0644 hypothetical protein K06889 K06889; uncharacterized protein D y2306 hypothetical K06889 K06889; uncharacterized protein D y3018 hypothetical protein K06890 K06890; uncharacterized protein D y2431 putative phage protein K06903 W; Bacteriophage baseplate protein W D y2434 hypothetical K06907 FI; Bacteriophage tail sheath protein D y1984 putative enzyme K06918 K06918; uncharacterized protein D y2727 hypothetical protein K06929 K06929; uncharacterized protein D y2898 hypothetical K06940 K06940; uncharacterized protein D y1878 putative symporter K06956 K06956; uncharacterized protein D y3512 hypothetical protein K07000 K07000; uncharacterized protein D y1776 hypothetical protein K07000 K07000; uncharacterized protein D y2924 putative sulfatase K07014 K07014; uncharacterized protein D y3961 hypothetical protein K07019 K07019; uncharacterized protein D y3707 hypothetical protein K07034 K07034; uncharacterized protein D y1422 hypothetical protein K07054 K07054; uncharacterized protein D y3973 hypothetical K07070 K07070; uncharacterized protein D y1611 putative sugar nucleotide epimerase K07071 K07071; uncharacterized protein D y1587 putative structural protein K07090 K07090; uncharacterized protein D y1613 hypothetical protein K07095 K07095; uncharacterized protein D y0655 hypothetical protein K07109 K07109; uncharacterized protein D y0534 putative integral membrane protein K07112 K07112; uncharacterized protein D y0118 putative glycosylase K07121 K07121; uncharacterized protein D y2322 hypothetical K07126 K07126; uncharacterized protein D Y1027.pl unknown K07128 K07128; uncharacterized protein D Y1025.pl putative ABC transporter K07128 K07128; uncharacterized protein D y2260 hypothetical protein K07136 K07136; uncharacterized protein D y0127 hypothetical protein K07139 K07139; uncharacterized protein D y2752 hypothetical protein K07140 K07140; MOSC domain-containing protein D y2663 hypothetical protein K07148 K07148; uncharacterized protein D y3330 hypothetical protein K09131 K09131; uncharacterized protein D y1174 hypothetical protein K09158 K09158; uncharacterized protein D y2228 hypothetical protein K09160 K09160; uncharacterized protein D y1624 hypothetical protein K09161 K09161; uncharacterized protein D y1450 hypothetical protein K09768 K09768; uncharacterized protein D y2036 hypothetical protein K09780 K09780; uncharacterized protein D y2169 hypothetical protein K09786 K09786; uncharacterized protein D y1058 putative gene 58 K09790 K09790; uncharacterized protein D y3077 hypothetical protein K09801 K09801; uncharacterized protein D y2607 putative alpha helix protein K09802 K09802; uncharacterized protein D y2428 hypothetical K09803 K09803; uncharacterized protein D y3304 putative actin K09807 K09807; uncharacterized protein D y2816 putative enzyme K09824 virK; uncharacterized protein D y2746 hypothetical protein K09857 K09857; uncharacterized protein D y3714 hypothetical protein K09861 K09861; uncharacterized protein D y0755 hypothetical protein K09862 K09862; uncharacterized protein D y0498 hypothetical protein K09891 K09891; uncharacterized protein D y3808 hypothetical protein K09894 K09894; uncharacterized protein D y3298 hypothetical protein K09895 K09895; uncharacterized protein D y3814 hypothetical protein K09896 K09896; uncharacterized protein D y0333 hypothetical protein K09897 K09897; uncharacterized protein D y3960 hypothetical protein K09898 K09898; uncharacterized protein D y1623 hypothetical protein K09899 K09899; uncharacterized protein D y2032 hypothetical protein K09901 K09901; uncharacterized protein D y2231 hypothetical protein K09902 K09902; uncharacterized protein D y2923 hypothetical protein K09904 K09904; uncharacterized protein D y2264 hypothetical protein K09907 K09907; uncharacterized protein D y0136 hypothetical protein K09908 K09908; uncharacterized protein D y2728 hypothetical K09909 K09909; uncharacterized protein D y0772 hypothetical protein K09910 K09910; uncharacterized protein D y2737 putative dehydrogenase K09911 K09911; uncharacterized protein D y2589 nucleoprotein/polynucleotide-associated enzyme K09912 K09912; uncharacterized protein D y2163 hypothetical protein K09916 K09916; uncharacterized protein D y2534 hypothetical protein K09917 K09917; uncharacterized protein D y2530 hypothetical protein K09918 K09918; uncharacterized protein D y3514 putative enzyme K09920 K09920; uncharacterized protein D y0386 hypothetical protein K09921 K09921; uncharacterized protein D y3337 hypothetical protein K09923 K09923; uncharacterized protein D y1380 hypothetical protein K09946 K09946; uncharacterized protein D y1493 conserved protein K09954 K09954; uncharacterized protein D y1496 hypothetical K09962 K09962; uncharacterized protein D y1091 putative ligase K09973 K09973; uncharacterized protein D y2337 hypothetical K09975 K09975; uncharacterized protein D y2007 hypothetical protein K09978 K09978; uncharacterized protein D y0717 hypothetical protein K09979 K09979; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024