| |
KO |
 09100 Metabolism
|
|
|
 09120 Genetic Information Processing
|
|
|
09121 Transcription
|
|
|
09122 Translation
|
|
|
09123 Folding, sorting and degradation
|
|
|
09124 Replication and repair
|
03030 DNA replication [PATH:afi03030]
|
03410 Base excision repair [PATH:afi03410]
|
 Acife_0577 endonuclease III
Acife_2894 A/G-specific adenine glycosylase
Acife_0551 Formamidopyrimidine-DNA glycosylase
Acife_0853 DNA-binding DNA glycosylase/AP lyase, H2TH
Acife_0386 DNA repair protein and transcriptional regulator, AraC family
Acife_1681 DNA repair protein and transcriptional regulator, AraC family
Acife_0266 phage SPO1 DNA polymerase-related protein
Acife_2866 exodeoxyribonuclease III Xth
Acife_2870 exodeoxyribonuclease III Xth
Acife_3099 DNA polymerase I
Acife_0873 phosphoesterase RecJ domain protein
Acife_1605 DNA ligase
|
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
|
03420 Nucleotide excision repair [PATH:afi03420]
|
03430 Mismatch repair [PATH:afi03430]
|
03440 Homologous recombination [PATH:afi03440]
|
03450 Non-homologous end-joining
|
03460 Fanconi anemia pathway
|
|
|
09126 Chromosome
|
|
|
09125 Information processing in viruses
|
|
|
09130 Environmental Information Processing
|
|
|
09140 Cellular Processes
|
|
|
09150 Organismal Systems
|
|
|
09160 Human Diseases
|
|
|
09180 Brite Hierarchies
|
|
|
09181 Protein families: metabolism
|
|
|
09182 Protein families: genetic information processing
|
03000 Transcription factors [BR:afi03000]
|
03021 Transcription machinery [BR:afi03021]
|
03019 Messenger RNA biogenesis [BR:afi03019]
|
03041 Spliceosome
|
03011 Ribosome [BR:afi03011]
|
03009 Ribosome biogenesis [BR:afi03009]
|
03016 Transfer RNA biogenesis [BR:afi03016]
|
03012 Translation factors [BR:afi03012]
|
03110 Chaperones and folding catalysts [BR:afi03110]
|
04131 Membrane trafficking [BR:afi04131]
|
04121 Ubiquitin system
|
03051 Proteasome [BR:afi03051]
|
03032 DNA replication proteins [BR:afi03032]
|
03036 Chromosome and associated proteins [BR:afi03036]
|
03400 DNA repair and recombination proteins [BR:afi03400]
|
Acife_1682 methylated-DNA/protein-cysteine methyltransferase
Acife_2894 A/G-specific adenine glycosylase
Acife_0577 endonuclease III
Acife_2801 mutator MutT protein
Acife_2681 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
Acife_0266 phage SPO1 DNA polymerase-related protein
Acife_0386 DNA repair protein and transcriptional regulator, AraC family
Acife_1681 DNA repair protein and transcriptional regulator, AraC family
Acife_0551 Formamidopyrimidine-DNA glycosylase
Acife_0853 DNA-binding DNA glycosylase/AP lyase, H2TH
Acife_2866 exodeoxyribonuclease III Xth
Acife_2870 exodeoxyribonuclease III Xth
Acife_0873 phosphoesterase RecJ domain protein
Acife_1605 DNA ligase
Acife_3099 DNA polymerase I
Acife_0299 UvrABC system protein A
Acife_1355 UvrABC system protein B
Acife_1363 UvrABC system protein C
Acife_3104 UvrD/REP helicase
Acife_2717 DNA-directed RNA polymerase subunit beta
Acife_2716 DNA-directed RNA polymerase subunit beta'
Acife_2683 DNA-directed RNA polymerase subunit alpha
Acife_2224 DNA-directed RNA polymerase subunit omega
Acife_2666 transcription-repair coupling factor
Acife_2054 DNA mismatch repair protein mutS
Acife_2384 DNA mismatch repair protein MutS domain protein
Acife_2154 DNA mismatch repair protein MutS domain protein
Acife_1509 DNA mismatch repair protein mutL
Acife_1695 Exodeoxyribonuclease 7 large subunit
Acife_1699 Exodeoxyribonuclease 7 small subunit
Acife_2052 Exonuclease RNase T and DNA polymerase III
Acife_1313 DNA polymerase III, alpha subunit
Acife_0002 DNA polymerase III, beta subunit
Acife_1216 DNA polymerase III chi subunit HolC
Acife_0842 DNA polymerase III, delta subunit
Acife_1449 DNA polymerase III, delta prime subunit
Acife_2641 DNA polymerase III, epsilon subunit
Acife_1501 DNA polymerase III, subunits gamma and tau
Acife_0300 single-strand binding protein
Acife_2988 single-strand binding protein
Acife_0112 exodeoxyribonuclease V, beta subunit
Acife_0113 exodeoxyribonuclease V, gamma subunit
Acife_0111 exodeoxyribonuclease V, alpha subunit
Acife_0728 helicase, RecD/TraA family
Acife_1832 Protein recA
Acife_0142 Holliday junction ATP-dependent DNA helicase ruvA
Acife_0141 Holliday junction ATP-dependent DNA helicase ruvB
Acife_0143 Crossover junction endodeoxyribonuclease ruvC
Acife_0977 primosomal protein N'
Acife_2366 SMC domain protein
Acife_2367 nuclease SbcCD, D subunit
Acife_0332 DNA repair protein RadA
Acife_0003 DNA replication and repair protein recF
Acife_0178 putative transcriptional regulator
Acife_0839 putative transcriptional regulator
Acife_2220 ATP-dependent DNA helicase RecG
Acife_2372 putative transcriptional regulator
Acife_1757 DNA repair protein recO
Acife_1503 Recombination protein recR
Acife_0685 DNA repair protein RecN
Acife_1387 DNA gyrase, A subunit
Acife_0004 DNA gyrase, B subunit
Acife_0011 DNA topoisomerase I
Acife_3067 DNA topoisomerase I
Acife_0752 histone family protein DNA-binding protein
Acife_1404 histone family protein DNA-binding protein
Acife_3007 histone family protein DNA-binding protein
Acife_2833 transcriptional regulator, Fis family
Acife_0730 histone family protein DNA-binding protein
Acife_2533 Integration host factor subunit alpha
Acife_2608 histone family protein DNA-binding protein
Acife_2239 histone family protein DNA-binding protein
Acife_1956 histone family protein DNA-binding protein
Acife_1962 histone family protein DNA-binding protein
Acife_3008 histone family protein DNA-binding protein
Acife_0359 histone family protein DNA-binding protein
Acife_1396 integration host factor, beta subunit
Acife_1224 ATP-dependent DNA helicase RecQ
Acife_1735 hypothetical protein
Acife_1720 DNA polymerase IV
Acife_0724 UMUC domain protein DNA-repair protein
Acife_0725 Peptidase S24/S26A/S26B, conserved region
Acife_1407 SOS-response transcriptional repressor, LexA
Acife_2182 DNA-damage-inducible protein D
Acife_1831 Regulatory protein recX
Acife_3108 PHP domain protein
Acife_1230 UvrD/REP helicase
Acife_2436 helicase c2
Acife_2561 ribonucleoside-diphosphate reductase, alpha subunit
Acife_2562 ribonucleotide reductase
|
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K04764 ihfA; integration host factor subunit alpha
K04764 ihfA; integration host factor subunit alpha
K04764 ihfA; integration host factor subunit alpha
K04764 ihfA; integration host factor subunit alpha
K04764 ihfA; integration host factor subunit alpha
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14623 dinD; DNA-damage-inducible protein D
K03565 recX; regulatory protein
K02347 polX; DNA polymerase (family X)
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
|
03029 Mitochondrial biogenesis [BR:afi03029]
|
|
|
09183 Protein families: signaling and cellular processes
|
|
|
09185 Viral protein families
|
|
|
09184 RNA family
|
|
|
09190 Not Included in Pathway or Brite
|
KEGG Orthology (KO) - Acidithiobacillus ferrivorans