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 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:afl03030]
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03410 Base excision repair [PATH:afl03410]
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03420 Nucleotide excision repair [PATH:afl03420]
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03430 Mismatch repair [PATH:afl03430]
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03440 Homologous recombination [PATH:afl03440]
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 Aflv_0724 Single-stranded DNA-specific exonuclease RecJ
Aflv_2847 ssb; Single-stranded DNA-binding protein
Aflv_0004 recF; Recombinational DNA repair ATPase RecF
Aflv_0852 recO; Recombinational DNA repair protein (RecF pathway)
Aflv_0019 recR; Recombinational DNA repair protein RecR
Aflv_1530 recA; RecA/RadA recombinase (multifunctional SOS repair regulator)
Aflv_0510 polA; DNA polymerase I
Aflv_0711 ruvA; Holliday junction resolvasome, DNA-binding subunit
Aflv_0712 ruvB; Holliday junction resolvasome, helicase subunit RuvB
Aflv_0164 Predicted transcriptional regulator containing an HTH domain and diverged ATP-binding domain (Schlafen-like)
Aflv_1776 recG; RecG-like helicase
Aflv_2555 Predicted transcriptional regulator
Aflv_2816 Uncharacterized conserved protein
Aflv_0740 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
Aflv_0494 dnaE; DNA polymerase III, alpha subunit
Aflv_1700 polC; DNA polymerase III, alpha subunit (gram-positive type)
Aflv_0002 dnaN; DNA polymerase sliding clamp subunit
Aflv_0017 dnaX; DNA polymerase III tau subunit
Aflv_0825 DNA polymerase III, delta subunit
Aflv_0026 holB; ATPase involved in DNA replication HolB
Aflv_2262 Exonuclease
Aflv_1334 3'-5' exonuclease related protein
Aflv_1792 priA; Primosomal protein N' (replication factor Y) - superfamily II helicase
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:afl03000]
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03021 Transcription machinery [BR:afl03021]
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03019 Messenger RNA biogenesis [BR:afl03019]
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03041 Spliceosome
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03011 Ribosome [BR:afl03011]
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03009 Ribosome biogenesis [BR:afl03009]
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03016 Transfer RNA biogenesis [BR:afl03016]
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03012 Translation factors [BR:afl03012]
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03110 Chaperones and folding catalysts [BR:afl03110]
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04131 Membrane trafficking [BR:afl04131]
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04121 Ubiquitin system [BR:afl04121]
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03051 Proteasome
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03032 DNA replication proteins [BR:afl03032]
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03036 Chromosome and associated proteins [BR:afl03036]
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03400 DNA repair and recombination proteins [BR:afl03400]
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Aflv_2330 adaB; O6-methylguanine-DNA methyltransferase
Aflv_1228 Deoxyribodipyrimidine photolyase
Aflv_2770 ung; Uracil DNA glycosylase
Aflv_0352 mutY; A/G-specific adenine glycosylase
Aflv_1136 nth; Predicted EndoIII-related endonuclease
Aflv_2527 NTP pyrophosphohydrolase
Aflv_0332 NUDIX family hydrolase
Aflv_1626 NUDIX family hydrolase
Aflv_0403 NUDIX family hydrolase
Aflv_1625 NUDIX family hydrolase
Aflv_0330 3-methyladenine DNA glycosylase
Aflv_0511 mutM; Formamidopyrimidine-DNA glycosylase
Aflv_0864 Endonuclease IV
Aflv_0724 Single-stranded DNA-specific exonuclease RecJ
Aflv_0247 ligA; NAD-dependent DNA ligase
Aflv_0510 polA; DNA polymerase I
Aflv_2546 uvrA; Excinuclease ABC (subunit A, ATPase)
Aflv_2547 uvrB; Excinuclease ABC (subunit B, helicase)
Aflv_0578 uvrC; Excinuclease ABC subunit C
Aflv_0246 pcrA; ATP-dependent DNA helicase PcrA
Aflv_1173 pcrA; Superfamily I helicase domain and RecB family exonuclease domain
Aflv_2077 ATP-dependent DNA helicase UvrD subfamily fused to unknown CXXC motif containing domain
Aflv_2237 pcrA; ATP-dependent DNA helicase
Aflv_0097 rpoB; DNA-directed RNA polymerase beta subunit
Aflv_0098 rpoC; DNA-directed RNA polymerase beta' subunit
Aflv_0132 rpoA; DNA-directed RNA polymerase alpha subunit
Aflv_2733 rpoE; DNA-directed RNA polymerase delta subunit
Aflv_1794 DNA-directed RNA polymerase, subunit K/omega
Aflv_0048 mfd; Transcription-repair coupling factor (helicase, mfd)
Aflv_1520 mutS; Mismatch repair ATPase (MutS family)
Aflv_0561 mutSB; DNA mismatch repair protein, MutSB
Aflv_1519 mutL; DNA mismatch repair enzyme (predicted ATPase)
Aflv_0945 Exonuclease VII large subunit
Aflv_0946 Exonuclease VII small subunit
Aflv_0494 dnaE; DNA polymerase III, alpha subunit
Aflv_1700 polC; DNA polymerase III, alpha subunit (gram-positive type)
Aflv_0002 dnaN; DNA polymerase sliding clamp subunit
Aflv_0825 DNA polymerase III, delta subunit
Aflv_0026 holB; ATPase involved in DNA replication HolB
Aflv_2262 Exonuclease
Aflv_1334 3'-5' exonuclease related protein
Aflv_0017 dnaX; DNA polymerase III tau subunit
Aflv_2847 ssb; Single-stranded DNA-binding protein
Aflv_1192 Site-specific DNA methylase
Aflv_0740 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
Aflv_1530 recA; RecA/RadA recombinase (multifunctional SOS repair regulator)
Aflv_0711 ruvA; Holliday junction resolvasome, DNA-binding subunit
Aflv_0712 ruvB; Holliday junction resolvasome, helicase subunit RuvB
Aflv_1792 priA; Primosomal protein N' (replication factor Y) - superfamily II helicase
Aflv_2228 ATPase involved in DNA repair, SbcC
Aflv_2229 sbcD; DNA repair exonuclease, SbcD
Aflv_0078 radA; ATP-dependent serine protease, RadA
Aflv_0004 recF; Recombinational DNA repair ATPase RecF
Aflv_0164 Predicted transcriptional regulator containing an HTH domain and diverged ATP-binding domain (Schlafen-like)
Aflv_1776 recG; RecG-like helicase
Aflv_2555 Predicted transcriptional regulator
Aflv_2816 Uncharacterized conserved protein
Aflv_0852 recO; Recombinational DNA repair protein (RecF pathway)
Aflv_0019 recR; Recombinational DNA repair protein RecR
Aflv_0951 recN; ATPase involved in DNA repair
Aflv_1140 recU; Penicillin-binding protein-related factor A, putative recombinase
Aflv_2230 addA; ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)
Aflv_2231 addB; ATP-dependent nuclease, subunit B
Aflv_0770 CRISPR-associated protein Cas1
Aflv_0006 gyrA; DNA gyrase subunit A
Aflv_0005 gyrB; DNA gyrase subunit B
Aflv_1750 topA; DNA topoisomerase
Aflv_1090 hbs; DNA-binding protein HU-alpha (histone-like protein)
Aflv_1059 recQ; Superfamily II DNA helicase
Aflv_1506 lexA; SOS-response transcriptional repressor (RecA-mediated autopeptidase)
Aflv_0637 lexA; SOS-response transcriptional repressor LexA (HTH, RecA-mediated autopeptidase)
Aflv_0345 Uncharacterized conserved protein, RecX family
Aflv_0560 DNA polymerase IV fused to PHP family metal-dependent phosphoesterase
Aflv_1129 dnaQ; DNA polymerase III, epsilon subunit and Rad3-related DNA helicase
Aflv_1357 Rad3-related DNA helicase
Aflv_0393 nrdE; Ribonucleotide reductase, alpha subunit
Aflv_0390 nrdF; Ribonucleotide reductase, beta subunit
Aflv_0491 Bifunctional oligoRNAse and pAp phosphatase
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03048 rpoE; DNA-directed RNA polymerase subunit delta
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03700 recU; recombination protein U
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K15342 cas1; CRISP-associated protein Cas1
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K02347 polX; DNA polymerase (family X)
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:afl03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Anoxybacillus flavithermus