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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:amt03030]
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03410 Base excision repair [PATH:amt03410]
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03420 Nucleotide excision repair [PATH:amt03420]
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03430 Mismatch repair [PATH:amt03430]
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03440 Homologous recombination [PATH:amt03440]
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 Amet_2351 single-stranded-DNA-specific exonuclease RecJ
Amet_0033 single-strand binding protein
Amet_2585 single-strand binding protein
Amet_0004 DNA replication and repair protein RecF
Amet_3024 DNA repair protein RecO
Amet_4779 recombination protein RecR
Amet_2658 recA protein
Amet_3125 DNA polymerase I
Amet_2338 Holliday junction DNA helicase RuvA
Amet_2339 Holliday junction DNA helicase RuvB
Amet_2337 crossover junction endodeoxyribonuclease RuvC
Amet_2770 ATP-dependent DNA helicase RecG
Amet_0222 putative transcriptional regulator
Amet_0722 helicase, RecD/TraA family
Amet_4071 DNA polymerase III, alpha subunit
Amet_2678 DNA polymerase III, alpha subunit
Amet_0002 DNA polymerase III, beta subunit
Amet_4781 DNA polymerase III, subunits gamma and tau
Amet_3057 DNA polymerase III, delta subunit
Amet_0084 DNA polymerase III, delta prime subunit
Amet_2787 primosomal protein N'
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:amt03000]
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03021 Transcription machinery [BR:amt03021]
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03019 Messenger RNA biogenesis [BR:amt03019]
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03041 Spliceosome
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03011 Ribosome [BR:amt03011]
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03009 Ribosome biogenesis [BR:amt03009]
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03016 Transfer RNA biogenesis [BR:amt03016]
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03012 Translation factors [BR:amt03012]
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03110 Chaperones and folding catalysts [BR:amt03110]
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04131 Membrane trafficking [BR:amt04131]
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04121 Ubiquitin system [BR:amt04121]
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03051 Proteasome [BR:amt03051]
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03032 DNA replication proteins [BR:amt03032]
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03036 Chromosome and associated proteins [BR:amt03036]
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03400 DNA repair and recombination proteins [BR:amt03400]
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Amet_3514 methylated-DNA--protein-cysteine methyltransferase
Amet_4255 uracil-DNA glycosylase
Amet_4327 A/G-specific adenine glycosylase
Amet_0831 8-oxoguanine DNA glycosylase domain protein
Amet_3628 endonuclease III
Amet_4220 DEAD_2 domain protein
Amet_2933 NUDIX hydrolase
Amet_4278 NUDIX hydrolase
Amet_0869 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
Amet_0585 exodeoxyribonuclease III Xth
Amet_2351 single-stranded-DNA-specific exonuclease RecJ
Amet_0942 DNA ligase, NAD-dependent
Amet_3125 DNA polymerase I
Amet_4126 excinuclease ABC, A subunit
Amet_3847 ABC transporter related
Amet_4127 excinuclease ABC, B subunit
Amet_4124 excinuclease ABC, C subunit
Amet_0941 ATP-dependent DNA helicase PcrA
Amet_2202 UvrD/REP helicase
Amet_1004 superfamily I DNA helicase
Amet_4486 DNA-directed RNA polymerase, beta subunit
Amet_4485 DNA-directed RNA polymerase, beta' subunit
Amet_4449 DNA-directed RNA polymerase, alpha subunit
Amet_2789 DNA-directed RNA polymerase, omega subunit
Amet_0160 transcription-repair coupling factor
Amet_2544 DNA mismatch repair protein MutS
Amet_1712 MutS2 family protein
Amet_4550 DNA mismatch repair protein MutS domain protein
Amet_2543 DNA mismatch repair protein MutL
Amet_2503 exodeoxyribonuclease VII, large subunit
Amet_2504 exodeoxyribonuclease VII, small subunit
Amet_4071 DNA polymerase III, alpha subunit
Amet_2678 DNA polymerase III, alpha subunit
Amet_0002 DNA polymerase III, beta subunit
Amet_3057 DNA polymerase III, delta subunit
Amet_0084 DNA polymerase III, delta prime subunit
Amet_4781 DNA polymerase III, subunits gamma and tau
Amet_0033 single-strand binding protein
Amet_2585 single-strand binding protein
Amet_2440 DNA adenine methylase
Amet_0722 helicase, RecD/TraA family
Amet_2658 recA protein
Amet_2338 Holliday junction DNA helicase RuvA
Amet_2339 Holliday junction DNA helicase RuvB
Amet_2337 crossover junction endodeoxyribonuclease RuvC
Amet_2787 primosomal protein N'
Amet_4167 SMC domain protein
Amet_3975 SMC domain protein
Amet_4168 nuclease SbcCD, D subunit
Amet_4511 DNA repair protein RadA
Amet_0004 DNA replication and repair protein RecF
Amet_2770 ATP-dependent DNA helicase RecG
Amet_0222 putative transcriptional regulator
Amet_3024 DNA repair protein RecO
Amet_4779 recombination protein RecR
Amet_2511 DNA repair protein RecN
Amet_4169 Recombination helicase AddA
Amet_4176 ATP-dependent nuclease subunit AddB
Amet_2195 CRISPR-associated protein Cas1
Amet_1667 CRISPR-associated protein Cas1
Amet_0007 DNA gyrase, A subunit
Amet_3106 DNA topoisomerase (ATP-hydrolyzing)
Amet_0006 DNA gyrase, B subunit
Amet_3107 DNA gyrase, subunit B domain protein
Amet_2735 DNA topoisomerase I
Amet_0165 histone family protein DNA-binding protein
Amet_4695 ATP-dependent DNA helicase RecQ
Amet_4216 DNA-directed DNA polymerase
Amet_1769 DNA-directed DNA polymerase
Amet_2535 SOS-response transcriptional repressor, LexA
Amet_2515 regulatory protein RecX
Amet_3166 PHP C-terminal domain protein
Amet_3769 helicase c2
Amet_2671 phosphoesterase, RecJ domain protein
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K15342 cas1; CRISP-associated protein Cas1
K15342 cas1; CRISP-associated protein Cas1
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K02347 polX; DNA polymerase (family X)
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:amt03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Alkaliphilus metalliredigens