YYY_04115 endonuclease IV
       YYY_02040 formamidopyrimidine-DNA glycosylase
       YYY_06420 DNA glycosylase
       YYY_02335 exodeoxyribonuclease III
       YYY_02485 exodeoxyribonuclease III
       YYY_05450 recombination protein RecJ
       YYY_00685 DNA ligase

K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]

       YYY_04115 endonuclease IV
       YYY_01855 deoxyuridine 5'-triphosphate nucleotidohydrolase
       YYY_06420 DNA glycosylase
       YYY_02040 formamidopyrimidine-DNA glycosylase
       YYY_02335 exodeoxyribonuclease III
       YYY_02485 exodeoxyribonuclease III
       YYY_05450 recombination protein RecJ
       YYY_00685 DNA ligase
       YYY_02605 excinuclease ABC subunit A
       YYY_06400 excinuclease ABC subunit B
       YYY_04065 excinuclease ABC subunit C
       YYY_04135 DNA helicase II
       YYY_04735 rpoB; DNA-directed RNA polymerase subunit beta
       YYY_04730 DNA-directed RNA polymerase subunit beta'
       YYY_01460 DNA-directed RNA polymerase subunit alpha
       YYY_02515 DNA-directed RNA polymerase subunit omega
       YYY_00540 transcription-repair coupling factor
       YYY_03950 DNA mismatch repair protein MutS
       YYY_04325 DNA mismatch repair protein MutL
       YYY_06195 exodeoxyribonuclease VII large subunit
       YYY_00395 exodeoxyribonuclease VII small subunit
       YYY_04620 DNA polymerase III subunit alpha
       YYY_05075 DNA polymerase III subunit beta
       YYY_05860 DNA polymerase III subunit delta
       YYY_03660 DNA polymerase III subunit gamma
       YYY_03435 DNA polymerase III subunit epsilon
       YYY_06325 DNA polymerase III subunit gamma/tau
       YYY_02310 single-stranded DNA-binding protein
       YYY_06350 recombinase RecA
       YYY_00825 Holliday junction DNA helicase RuvA
       YYY_00820 ruvB; Holliday junction DNA helicase RuvB
       YYY_00090 crossover junction endodeoxyribonuclease RuvC
       YYY_01730 primosomal protein N'
       YYY_06595 recombinase RecF
       YYY_06080 ATP-dependent DNA helicase RecG
       YYY_03460 DNA repair protein RecO
       YYY_04555 recombinase RecR
       YYY_01235 exodeoxyribonuclease V
       YYY_03925 hypothetical protein
       YYY_04120 DNA gyrase subunit A
       YYY_03370 gyrB; DNA gyrase subunit B
       YYY_02845 DNA topoisomerase I
       YYY_03665 DNA-binding protein
       YYY_05995 integration host factor alpha-subunit
       YYY_01300 integration host factor subunit beta
       YYY_01595 ribonucleotide-diphosphate reductase subunit alpha
       YYY_02705 ribonucleotide-diphosphate reductase subunit beta

K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]