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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:bcy03030]
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03410 Base excision repair [PATH:bcy03410]
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03420 Nucleotide excision repair [PATH:bcy03420]
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03430 Mismatch repair [PATH:bcy03430]
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03440 Homologous recombination [PATH:bcy03440]
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 Bcer98_3125 single-stranded-DNA-specific exonuclease RecJ
Bcer98_1615 single-strand binding protein
Bcer98_4013 single-strand binding protein
Bcer98_0004 DNA replication and repair protein RecF
Bcer98_3024 DNA repair protein RecO
Bcer98_0020 recombination protein RecR
Bcer98_2431 recA protein
Bcer98_3272 DNA polymerase I
Bcer98_3138 Holliday junction DNA helicase RuvA
Bcer98_3137 Holliday junction DNA helicase RuvB
Bcer98_2507 ATP-dependent DNA helicase RecG
Bcer98_3106 helicase, RecD/TraA family
Bcer98_3288 DNA polymerase III, alpha subunit
Bcer98_2470 DNA polymerase III, alpha subunit
Bcer98_0002 DNA polymerase III, beta subunit
Bcer98_0018 DNA polymerase III, subunits gamma and tau
Bcer98_3050 DNA polymerase III, delta subunit
Bcer98_0026 DNA polymerase III, delta prime subunit
Bcer98_2260 DNA polymerase III, epsilon subunit
Bcer98_2520 primosomal protein N'
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:bcy03000]
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03021 Transcription machinery [BR:bcy03021]
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03019 Messenger RNA biogenesis [BR:bcy03019]
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03041 Spliceosome
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03011 Ribosome [BR:bcy03011]
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03009 Ribosome biogenesis [BR:bcy03009]
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03016 Transfer RNA biogenesis [BR:bcy03016]
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03012 Translation factors [BR:bcy03012]
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03110 Chaperones and folding catalysts [BR:bcy03110]
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04131 Membrane trafficking [BR:bcy04131]
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04121 Ubiquitin system [BR:bcy04121]
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03051 Proteasome
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03032 DNA replication proteins [BR:bcy03032]
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03036 Chromosome and associated proteins [BR:bcy03036]
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03400 DNA repair and recombination proteins [BR:bcy03400]
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Bcer98_1530 methylated-DNA--protein-cysteine methyltransferase
Bcer98_3919 uracil-DNA glycosylase
Bcer98_0703 DNA-3-methyladenine glycosylase
Bcer98_0443 A/G-specific adenine glycosylase
Bcer98_1270 endonuclease III
Bcer98_1856 NUDIX hydrolase
Bcer98_3699 NUDIX hydrolase
Bcer98_3459 Nucleoside triphosphatase YtkD
Bcer98_0161 NUDIX hydrolase
Bcer98_2612 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
Bcer98_1253 Uracil-DNA glycosylase superfamily
Bcer98_0411 DNA-3-methyladenine glycosylase II
Bcer98_3271 formamidopyrimidine-DNA glycosylase
Bcer98_3012 apurinic endonuclease Apn1
Bcer98_3125 single-stranded-DNA-specific exonuclease RecJ
Bcer98_0286 DNA ligase, NAD-dependent
Bcer98_3272 DNA polymerase I
Bcer98_3709 excinuclease ABC, A subunit
Bcer98_3710 excinuclease ABC, B subunit
Bcer98_3219 excinuclease ABC, C subunit
Bcer98_0285 ATP-dependent DNA helicase PcrA
Bcer98_1990 UvrD/REP helicase
Bcer98_0943 UvrD/REP helicase
Bcer98_0097 DNA-directed RNA polymerase, beta' subunit
Bcer98_0131 DNA-directed RNA polymerase, alpha subunit
Bcer98_3860 DNA-directed RNA polymerase delta subunit
Bcer98_2522 DNA-directed RNA polymerase, omega subunit
Bcer98_0048 transcription-repair coupling factor
Bcer98_2421 DNA mismatch repair protein MutS
Bcer98_3240 MutS2 family protein
Bcer98_2199 DNA mismatch repair protein MutS domain protein
Bcer98_2420 DNA mismatch repair protein MutL
Bcer98_2873 exodeoxyribonuclease VII, large subunit
Bcer98_2872 exodeoxyribonuclease VII, small subunit
Bcer98_3288 DNA polymerase III, alpha subunit
Bcer98_2470 DNA polymerase III, alpha subunit
Bcer98_0002 DNA polymerase III, beta subunit
Bcer98_3050 DNA polymerase III, delta subunit
Bcer98_0026 DNA polymerase III, delta prime subunit
Bcer98_2260 DNA polymerase III, epsilon subunit
Bcer98_0018 DNA polymerase III, subunits gamma and tau
Bcer98_1615 single-strand binding protein
Bcer98_4013 single-strand binding protein
Bcer98_3991 DNA adenine methylase
Bcer98_3106 helicase, RecD/TraA family
Bcer98_2431 recA protein
Bcer98_3138 Holliday junction DNA helicase RuvA
Bcer98_3137 Holliday junction DNA helicase RuvB
Bcer98_2520 primosomal protein N'
Bcer98_1736 SMC domain protein
Bcer98_1735 nuclease SbcCD, D subunit
Bcer98_0077 DNA repair protein RadA
Bcer98_0004 DNA replication and repair protein RecF
Bcer98_2507 ATP-dependent DNA helicase RecG
Bcer98_3024 DNA repair protein RecO
Bcer98_0020 recombination protein RecR
Bcer98_2867 DNA repair protein RecN
Bcer98_1273 recombination protein U
Bcer98_0860 Recombination helicase AddA
Bcer98_0859 ATP-dependent nuclease subunit AddB
Bcer98_0006 DNA gyrase, A subunit
Bcer98_0005 DNA gyrase, B subunit
Bcer98_2485 DNA topoisomerase I
Bcer98_1763 histone family protein DNA-binding protein
Bcer98_2403 histone family protein DNA-binding protein
Bcer98_1233 histone family protein DNA-binding protein
Bcer98_2617 RecT protein
Bcer98_1208 ATP-dependent DNA helicase, RecQ family
Bcer98_1919 ATP-dependent DNA helicase RecQ
Bcer98_2840 DNA-directed DNA polymerase
Bcer98_2344 SOS-response transcriptional repressor, LexA
Bcer98_0437 regulatory protein RecX
Bcer98_3241 PHP domain protein
Bcer98_1265 DnaQ family exonuclease/DinG family helicase, putative
Bcer98_1300 helicase c2
Bcer98_1075 Ribonucleoside-diphosphate reductase
Bcer98_1074 Ribonucleoside-diphosphate reductase
Bcer98_1076 Ribonucleoside-diphosphate reductase
Bcer98_3291 phosphoesterase RecJ domain protein
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03048 rpoE; DNA-directed RNA polymerase subunit delta
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03700 recU; recombination protein U
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K07455 recT; recombination protein RecT
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K02347 polX; DNA polymerase (family X)
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:bcy03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Bacillus cytotoxicus