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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:bsx03030]
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03410 Base excision repair [PATH:bsx03410]
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03420 Nucleotide excision repair [PATH:bsx03420]
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03430 Mismatch repair [PATH:bsx03430]
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03440 Homologous recombination [PATH:bsx03440]
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03450 Non-homologous end-joining [PATH:bsx03450]
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 C663_1380 ykoV; ATP-dependent DNA ligase subunit
C663_1379 ykoU; ATP-dependent DNA ligase
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K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:bsx03000]
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03021 Transcription machinery [BR:bsx03021]
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03019 Messenger RNA biogenesis [BR:bsx03019]
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03041 Spliceosome
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03011 Ribosome [BR:bsx03011]
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03009 Ribosome biogenesis [BR:bsx03009]
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03016 Transfer RNA biogenesis [BR:bsx03016]
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03012 Translation factors [BR:bsx03012]
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03110 Chaperones and folding catalysts [BR:bsx03110]
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04131 Membrane trafficking [BR:bsx04131]
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04121 Ubiquitin system [BR:bsx04121]
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03051 Proteasome [BR:bsx03051]
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03032 DNA replication proteins [BR:bsx03032]
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03036 Chromosome and associated proteins [BR:bsx03036]
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03400 DNA repair and recombination proteins [BR:bsx03400]
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C663_1394 ogt; O6-alkylguanine DNA alkyltransferase
C663_3705 ung; uracil-DNA glycosylase
C663_3775 yxlJ; 3-methyladenine DNA glycosylase
C663_0885 yfhQ; A/G-specific adenine glycosylase or DNA-(apurinic or apyrimidinic site) lyase
C663_2107 nth; endonuclease III
C663_3366 yvcI; putative triphosphate pyrophosphate hydrolase
C663_3851 hypothetical protein
C663_2911 ytkD; nucleoside triphosphate phosphohydrolase
C663_0427 mutT; mutator protein
C663_1822 dut; putative deoxyuridine 5'-triphosphate pyrophosphatase
C663_0824 yfjP; putative DNA-modified purine glycosidase
C663_2753 mutM; formamidopyrimidine-DNA glycosidase
C663_4017 exoAA; apurinic/apyrimidinic endonuclease
C663_2395 nfo; endonuclease IV
C663_3509 ywqL; anion transporter
C663_2602 recJ; putative single-strand DNA-specific exonuclease
C663_0686 ligA; NAD-dependent DNA ligase
C663_2754 polA; DNA polymerase I
C663_3401 uvrA; excinuclease ABC subunit A
C663_3402 uvrB; excinuclease ABC subunit B
C663_2692 uvrC; excinuclease ABC subunit C
C663_0685 pcrA; ATP-dependent DNA helicase
C663_1211 hypothetical protein
C663_3937 srs; ATP-dependent DNA helicase
C663_3214 helD; DNA 3'-5' helicase IV
C663_0108 rpoB; DNA-directed RNA polymerase subunit beta
C663_0109 rpoC; DNA-directed RNA polymerase subunit beta
C663_0142 rpoA; DNA-directed RNA polymerase subunit alpha
C663_3616 rpoE; DNA-directed RNA polymerase subunit delta
C663_1613 rpoZ; DNA-directed RNA polymerase subunit omega
C663_0056 mfd; transcription-repair coupling factor
C663_1747 mutS; DNA mismatch repair protein
C663_2703 mutSB; recombination and DNA strand exchange inhibitor protein
C663_1748 mutL; DNA mismatch repair protein
C663_2313 xseA; exodeoxyribonuclease VII large subunit
C663_2312 xseB; exodeoxyribonuclease VII (small subunit)
C663_2768 dnaE; DNA polymerase III
C663_1704 polC; DNA polymerase III
C663_0003 dnaN; DNA polymerase III subunit beta
C663_2438 yqeN; DNA polymerase III subunit delta
C663_0032 holB; DNA polymerase III subunit delta'
C663_0021 dnaX; DNA polymerase III subunits gamma and tau
C663_3523 hypothetical protein
C663_0601 hypothetical protein
C663_2587 hypothetical protein
C663_2615 ruvA; Holliday junction DNA helicase
C663_2614 ruvB; Holliday junction DNA helicase
C663_1615 priA; primosome assembly protein PriA
C663_1089 hypothetical protein
C663_1088 sbcD; exonuclease SbcD-like protein
C663_0089 radA; DNA repair protein RadA
C663_0005 recF; recombination protein F
C663_1631 recG; ATP-dependent DNA helicase RecG
C663_2409 recO; DNA repair protein
C663_0023 recR; recombination protein RecR
C663_2306 recN; DNA repair and genetic recombination
C663_2104 recU; Holliday junction-specific endonuclease
C663_1087 addA; ATP-dependent deoxyribonuclease (subunit A)
C663_1086 addB; ATP-dependent deoxyribonuclease (subunit B)
C663_1380 ykoV; ATP-dependent DNA ligase subunit
C663_1379 ykoU; ATP-dependent DNA ligase
C663_0008 gyrA; DNA gyrase subunit A
C663_0007 gyrB; DNA gyrase subunit B
C663_1656 topA; DNA topoisomerase I
C663_2152 hupA; non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component
C663_0595 yqaK; putative DNA recombination protein; skin element
C663_2179 recS; ATP-dependent DNA helicase
C663_1972 recQ; putative ATP-dependent nucleic acid helicase
C663_2268 yqjH; DNA polymerase IV
C663_1838 lexA; LexA repressor
C663_0874 recX; recombination regulator
C663_2704 hypothetical protein
C663_2088 ypvA; putative ATP-dependent helicase
C663_2113 dinG; bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon
C663_1787 nrdE; ribonucleotide-diphosphate reductase subunit alpha
C663_1788 nrdF; ribonucleotide-diphosphate reductase subunit beta
C663_2772 nrnA; oligoribonuclease (nanoRNAse), 3',5'-bisphosphate nucleotidase
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03048 rpoE; DNA-directed RNA polymerase subunit delta
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03700 recU; recombination protein U
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K07455 recT; recombination protein RecT
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K02347 polX; DNA polymerase (family X)
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:bsx03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Bacillus subtilis XF-1