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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:cpy03030]
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03410 Base excision repair [PATH:cpy03410]
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03420 Nucleotide excision repair [PATH:cpy03420]
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03430 Mismatch repair [PATH:cpy03430]
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03440 Homologous recombination [PATH:cpy03440]
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 Cphy_0876 single-stranded-DNA-specific exonuclease RecJ
Cphy_2987 single-strand binding protein
Cphy_3773 single-strand binding protein
Cphy_0004 DNA replication and repair protein RecF
Cphy_0647 DNA repair protein RecO
Cphy_0048 recombination protein RecR
Cphy_2439 recA protein
Cphy_1333 Holliday junction DNA helicase RuvA
Cphy_1334 Holliday junction DNA helicase RuvB
Cphy_2890 ATP-dependent DNA helicase RecG
Cphy_0246 helicase, RecD/TraA family
Cphy_0335 DNA polymerase III, alpha subunit
Cphy_0145 DNA polymerase III, epsilon subunit
Cphy_2619 DNA polymerase III, alpha subunit
Cphy_0002 DNA polymerase III, beta subunit
Cphy_0046 DNA polymerase III, subunits gamma and tau
Cphy_1962 DNA polymerase III, delta subunit
Cphy_3913 DNA polymerase III, delta prime subunit
Cphy_2493 primosomal protein N'
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining [PATH:cpy03450]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:cpy03000]
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03021 Transcription machinery [BR:cpy03021]
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03019 Messenger RNA biogenesis [BR:cpy03019]
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03041 Spliceosome
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03011 Ribosome [BR:cpy03011]
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03009 Ribosome biogenesis [BR:cpy03009]
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03016 Transfer RNA biogenesis [BR:cpy03016]
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03012 Translation factors [BR:cpy03012]
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03110 Chaperones and folding catalysts [BR:cpy03110]
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04131 Membrane trafficking [BR:cpy04131]
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04121 Ubiquitin system [BR:cpy04121]
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03051 Proteasome [BR:cpy03051]
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03032 DNA replication proteins [BR:cpy03032]
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03036 Chromosome and associated proteins [BR:cpy03036]
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03400 DNA repair and recombination proteins [BR:cpy03400]
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Cphy_0286 methylated-DNA--protein-cysteine methyltransferase
Cphy_2839 uracil-DNA glycosylase
Cphy_3362 A/G-specific adenine glycosylase
Cphy_2022 8-oxoguanine DNA glycosylase domain protein
Cphy_0960 DNA-(apurinic or apyrimidinic site) lyase
Cphy_0144 endonuclease III
Cphy_0224 DEAD_2 domain protein
Cphy_1617 NUDIX hydrolase
Cphy_3136 NUDIX hydrolase
Cphy_0022 NUDIX hydrolase
Cphy_0122 NUDIX hydrolase
Cphy_1506 NUDIX hydrolase
Cphy_3133 NUDIX hydrolase
Cphy_3038 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
Cphy_1745 methylated-DNA--protein-cysteine methyltransferase
Cphy_3389 Formamidopyrimidine-DNA glycolase, H2TH DNA binding
Cphy_0982 exodeoxyribonuclease III
Cphy_1303 apurinic endonuclease Apn1
Cphy_0876 single-stranded-DNA-specific exonuclease RecJ
Cphy_2927 DNA ligase, NAD-dependent
Cphy_0260 excinuclease ABC, A subunit
Cphy_0259 excinuclease ABC, B subunit
Cphy_0327 excinuclease ABC, C subunit
Cphy_1673 Excinuclease ABC C subunit domain protein
Cphy_1352 UvrD/REP helicase
Cphy_0222 UvrD/REP helicase
Cphy_1632 ATP-dependent DNA helicase rep
Cphy_3687 DNA-directed RNA polymerase, beta subunit
Cphy_3686 DNA-directed RNA polymerase, beta' subunit
Cphy_3639 DNA-directed RNA polymerase, alpha subunit
Cphy_2879 DNA-directed RNA polymerase, omega subunit
Cphy_0112 transcription-repair coupling factor
Cphy_2381 DNA mismatch repair protein MutS
Cphy_0153 MutS2 family protein
Cphy_1218 DNA mismatch repair protein MutS domain protein
Cphy_2380 DNA mismatch repair protein MutL
Cphy_2514 exodeoxyribonuclease VII, large subunit
Cphy_2513 Exonuclease VII small subunit
Cphy_0335 DNA polymerase III, alpha subunit
Cphy_0145 DNA polymerase III, epsilon subunit
Cphy_2619 DNA polymerase III, alpha subunit
Cphy_0002 DNA polymerase III, beta subunit
Cphy_1962 DNA polymerase III, delta subunit
Cphy_3913 DNA polymerase III, delta prime subunit
Cphy_0046 DNA polymerase III, subunits gamma and tau
Cphy_2987 single-strand binding protein
Cphy_3773 single-strand binding protein
Cphy_0246 helicase, RecD/TraA family
Cphy_2439 recA protein
Cphy_1333 Holliday junction DNA helicase RuvA
Cphy_1334 Holliday junction DNA helicase RuvB
Cphy_2493 primosomal protein N'
Cphy_1246 SMC domain protein
Cphy_1245 nuclease SbcCD, D subunit
Cphy_3459 DNA repair protein RadA
Cphy_0004 DNA replication and repair protein RecF
Cphy_2890 ATP-dependent DNA helicase RecG
Cphy_0647 DNA repair protein RecO
Cphy_0048 recombination protein RecR
Cphy_2499 DNA repair protein RecN
Cphy_2788 Recombination protein U
Cphy_3423 recombination helicase AddA
Cphy_3424 ATP-dependent nuclease subunit B
Cphy_1728 Ku protein
Cphy_1729 DNA ligase D
Cphy_0006 DNA gyrase, A subunit
Cphy_0295 DNA topoisomerase (ATP-hydrolyzing)
Cphy_0005 DNA gyrase, B subunit
Cphy_0296 DNA topoisomerase (ATP-hydrolyzing)
Cphy_2722 DNA topoisomerase I
Cphy_0133 histone family protein DNA-binding protein
Cphy_1154 ATP-dependent DNA helicase RecQ
Cphy_3921 DNA-directed DNA polymerase
Cphy_2727 DNA-directed DNA polymerase
Cphy_2148 UMUC domain protein DNA-repair protein
Cphy_2543 transcriptional repressor, LexA family
Cphy_2438 regulatory protein RecX
Cphy_1544 helicase c2
Cphy_0708 DEAD/DEAH box helicase domain protein
Cphy_3223 ribonucleoside-diphosphate reductase, alpha subunit
Cphy_3222 Ribonucleoside-diphosphate reductase
Cphy_2772 phosphoesterase RecJ domain protein
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03700 recU; recombination protein U
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:cpy03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Lachnoclostridium phytofermentans