1. Oxidoreductases
2. Transferases
3. Hydrolases
3.1 Acting on ester bonds
3.2 Glycosylases
3.3 Acting on ether bonds
3.4 Acting on peptide bonds (peptidases)
3.4.11 Aminopeptidases
3.4.13 Dipeptidases
3.4.14 Dipeptidyl-peptidases and tripeptidyl-peptidases
3.4.15 Peptidyl-dipeptidases
3.4.16 Serine-type carboxypeptidases
3.4.17 Metallocarboxypeptidases
3.4.18 Cysteine-type carboxypeptidases
3.4.19 Omega peptidases
3.4.19.1 acylaminoacyl-peptidase
3.4.19.2 peptidyl-glycinamidase
3.4.19.3 pyroglutamyl-peptidase I
3.4.19.5 beta-aspartyl-peptidase
3.4.19.6 pyroglutamyl-peptidase II
3.4.19.7 N-formylmethionyl-peptidase
3.4.19.9 folate gamma-glutamyl hydrolase
3.4.19.11 gamma-D-glutamyl-meso-diaminopimelate peptidase
3.4.19.12 ubiquitinyl hydrolase 1
CpipJ_CPIJ016441 ubiquitin carboxyl-terminal hydrolase CpipJ_CPIJ003940 ubiquitin carboxyl-terminal hydrolase isozyme L5 CpipJ_CPIJ001439 ubiquitin carboxyl-terminal hydrolase BAP1 CpipJ_CPIJ004845 40S ribosomal protein S3a CpipJ_CPIJ002452 ubiquitin thioesterase OTUB1 CpipJ_CPIJ003218 ubiquitin carboxyl-terminal hydrolase 22 CpipJ_CPIJ014662 ubiquitin specific protease CpipJ_CPIJ005706 ubiquitin carboxyl-terminal hydrolase 5 CpipJ_CPIJ010349 ubiquitin specific protease CpipJ_CPIJ010988 ubiquitin carboxyl-terminal hydrolase 7 CpipJ_CPIJ013438 conserved hypothetical protein CpipJ_CPIJ002564 ubiquitin specific protease CpipJ_CPIJ005440 conserved hypothetical protein CpipJ_CPIJ002184 conserved hypothetical protein CpipJ_CPIJ014687 ubiquitin carboxyl-terminal hydrolase 14 CpipJ_CPIJ014686 conserved hypothetical protein CpipJ_CPIJ010867 conserved hypothetical protein CpipJ_CPIJ016898 conserved hypothetical protein CpipJ_CPIJ000241 ubiquitin carboxyl-terminal hydrolase 43 CpipJ_CPIJ009721 ubiquitin carboxyl-terminal hydrolase 34 CpipJ_CPIJ009172 ubiquitin carboxyl-terminal hydrolase 38 CpipJ_CPIJ007009 conserved hypothetical protein CpipJ_CPIJ019760 conserved hypothetical protein CpipJ_CPIJ016134 ubiquitin carboxyl-terminal hydrolase 64E CpipJ_CPIJ020047 OTU domain-containing protein 7A CpipJ_CPIJ017893 conserved hypothetical protein CpipJ_CPIJ010443 zinc finger Ran-binding domain-containing protein 1 CpipJ_CPIJ002590 amsh CpipJ_CPIJ009269 conserved hypothetical protein CpipJ_CPIJ002852 OTU domain-containing protein 5-A CpipJ_CPIJ008009 josephin-1 CpipJ_CPIJ015776 OTU domain-containing protein 6B CpipJ_CPIJ017204 MSTP126 CpipJ_CPIJ009481 conserved hypothetical protein CpipJ_CPIJ006193 conserved hypothetical protein CpipJ_CPIJ015838 conserved hypothetical protein CpipJ_CPIJ000376 conserved hypothetical protein
K05609 UCHL3; ubiquitin carboxyl-terminal hydrolase L3 [EC:3.4.19.12] K05610 UCHL5; ubiquitin carboxyl-terminal hydrolase L5 [EC:3.4.19.12] K08588 BAP1; ubiquitin carboxyl-terminal hydrolase BAP1 [EC:3.4.19.12] K08601 CYLD; ubiquitin carboxyl-terminal hydrolase CYLD [EC:3.4.19.12] K09602 OTUB1; ubiquitin thioesterase protein OTUB1 [EC:3.4.19.12] K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] K11832 USP1; ubiquitin carboxyl-terminal hydrolase 1 [EC:3.4.19.12] K11836 USP5_13; ubiquitin carboxyl-terminal hydrolase 5/13 [EC:3.4.19.12] K11837 USP6_32; ubiquitin carboxyl-terminal hydrolase 6/32 [EC:3.4.19.12] K11838 USP7; ubiquitin carboxyl-terminal hydrolase 7 [EC:3.4.19.12] K11838 USP7; ubiquitin carboxyl-terminal hydrolase 7 [EC:3.4.19.12] K11839 USP8; ubiquitin carboxyl-terminal hydrolase 8 [EC:3.4.19.12] K11841 USP10; ubiquitin carboxyl-terminal hydrolase 10 [EC:3.4.19.12] K11842 USP12_46; ubiquitin carboxyl-terminal hydrolase 12/46 [EC:3.4.19.12] K11843 USP14; ubiquitin carboxyl-terminal hydrolase 14 [EC:3.4.19.12] K11843 USP14; ubiquitin carboxyl-terminal hydrolase 14 [EC:3.4.19.12] K11844 USP16_45; ubiquitin carboxyl-terminal hydrolase 16/45 [EC:3.4.19.12] K11848 USP20_33; ubiquitin carboxyl-terminal hydrolase 20/33 [EC:3.4.19.12] K11852 USP31; ubiquitin carboxyl-terminal hydrolase 31 [EC:3.4.19.12] K11853 USP34; ubiquitin carboxyl-terminal hydrolase 34 [EC:3.4.19.12] K11854 USP35_38; ubiquitin carboxyl-terminal hydrolase 35/38 [EC:3.4.19.12] K11855 USP36_42; ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12] K11857 USP47; ubiquitin carboxyl-terminal hydrolase 47 [EC:3.4.19.12] K11857 USP47; ubiquitin carboxyl-terminal hydrolase 47 [EC:3.4.19.12] K11860 OTUD7A_B; OTU domain-containing protein 7 [EC:3.4.19.12] K11860 OTUD7A_B; OTU domain-containing protein 7 [EC:3.4.19.12] K11862 ZRANB1; ubiquitin thioesterase ZRANB1 [EC:3.4.19.12] K11866 STAMBP; STAM-binding protein [EC:3.4.19.12] K11986 USP3; ubiquitin carboxyl-terminal hydrolase 3 [EC:3.4.19.12] K12655 OTUD5; OTU domain-containing protein 5 [EC:3.4.19.12] K15235 JOSD; josephin [EC:3.4.19.12] K18342 OTUD6; OTU domain-containing protein 6 [EC:3.4.19.12] K22647 MINDY3_4; ubiquitin carboxyl-terminal hydrolase MINDY-3/4 [EC:3.4.19.12] K22647 MINDY3_4; ubiquitin carboxyl-terminal hydrolase MINDY-3/4 [EC:3.4.19.12] K22763 DESI2; deubiquitinase DESI2 [EC:3.4.19.12] K22763 DESI2; deubiquitinase DESI2 [EC:3.4.19.12] K24134 ZUP1; zinc finger-containing ubiquitin peptidase 1 [EC:3.4.19.12]
3.4.19.13 glutathione gamma-glutamate hydrolase
3.4.19.14 leukotriene-C4 hydrolase
3.4.19.15 desampylase
3.4.19.16 glucosinolate gamma-glutamyl hydrolase
3.4.21 Serine endopeptidases
3.4.22 Cysteine endopeptidases
3.4.23 Aspartic endopeptidases
3.4.24 Metalloendopeptidases
3.4.25 Threonine endopeptidases
3.4.26 Glutamic endopeptidases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.6 Acting on acid anhydrides
3.7 Acting on carbon-carbon bonds
3.8 Acting on halide bonds
3.9 Acting on phosphorus-nitrogen bonds
3.10 Acting on sulfur-nitrogen bonds
3.11 Acting on carbon-phosphorus bonds
3.12 Acting on sulfur-sulfur bonds
3.13 Acting on carbon-sulfur bonds
4. Lyases
5. Isomerases
6. Ligases
7. Translocases