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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:cvi03030]
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03410 Base excision repair [PATH:cvi03410]
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03420 Nucleotide excision repair [PATH:cvi03420]
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03430 Mismatch repair [PATH:cvi03430]
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03440 Homologous recombination [PATH:cvi03440]
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 CV_2475 recJ; exodeoxyribonuclease VII
CV_1889 ssb; single-strand DNA-binding protein
CV_2069 recO; DNA repair protein
CV_1612 recR; DNA repair DNA recombination zinc-finger protein
CV_1607 recA; RecA protein
CV_0779 polA; DNA-directed DNA polymerase I
CV_4223 ruvA; holliday junction DNA helicase
CV_4215 ruvB; holliday junction DNA helicase ruvB
CV_4225 ruvC; crossover junction endodeoxyribonuclease
CV_0933 recG; ATP-dependent DNA helicase
CV_4076 recB; exodeoxyribonuclease V, beta subunit
CV_4077 recC; exodeoxyribonuclease V, gamma subunit
CV_4073 recD; exodeoxyribonuclease V, alpha subunit
CV_0911 dnaE; DNA-directed DNA polymerase III, alpha subunit
CV_0002 dnaN; DNA-directed DNA polymerase, beta subunit
CV_1610 dnaX; DNA polymerase subunits gamma and tau
CV_0507 holA; DNA-directed DNA polymerase, delta subunit
CV_3722 holB; DNA-directed DNA polymerase III, delta subunit
CV_2946 probable DNA polymerase III
CV_2751 probable exonuclease
CV_1020 probable DNA-directed DNA polymerase III (epsilon subunit)
CV_1257 dnaQ; DNA-directed DNA polymerase, epsilon chain
CV_2913 holC; DNA polymerase III, chi subunit
CV_1124 priA; primosomal protein N`
CV_3639 priB; primosomal replication protein
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:cvi03000]
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03021 Transcription machinery [BR:cvi03021]
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03019 Messenger RNA biogenesis [BR:cvi03019]
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03041 Spliceosome
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03011 Ribosome [BR:cvi03011]
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03009 Ribosome biogenesis [BR:cvi03009]
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03016 Transfer RNA biogenesis [BR:cvi03016]
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03012 Translation factors [BR:cvi03012]
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03110 Chaperones and folding catalysts [BR:cvi03110]
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04131 Membrane trafficking [BR:cvi04131]
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04121 Ubiquitin system [BR:cvi04121]
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03051 Proteasome [BR:cvi03051]
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03032 DNA replication proteins [BR:cvi03032]
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03036 Chromosome and associated proteins [BR:cvi03036]
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03400 DNA repair and recombination proteins [BR:cvi03400]
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CV_1423 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase
CV_3671 probable methylated-DNA-[protein]-cysteine S-methyltransferase
CV_3481 phrB; deoxyribodipyrimidine photo-lyase
CV_0232 ung; uracil-DNA glycosylase
CV_3703 mutY; A/G-specific DNA glycosylase
CV_3293 nth; endonuclease III
CV_0060 probable endonuclease
CV_3611 probable bifunctional dGTP-pyrophosphohydrolase/thiamine phosphate synthase
CV_0032 probable MutT/nudix family protein
CV_1928 hypothetical protein
CV_3385 conserved hypothetical protein
CV_3081 dut; dUTP diphosphatase
CV_0220 probable methylated-DNA-[protein]-cysteine S-methyltransferase
CV_0391 ADA; methylated-DNA-[protein]-cysteine S-methyltransferase
CV_3229 conserved hypothetical protein
CV_3196 alkB; alkylated DNA repair protein, AlkB protein
CV_3454 probable DNA-directed DNA polymerase, bacteriophage-type
CV_3195 alkA; DNA-3-methyladenine glycosidase II
CV_1945 tag; DNA-3-methyladenine glycosylase I
CV_4062 mutM; DNA-formamidopyrimidine glycosylase
CV_0877 xthA; exodeoxyribonuclease III
CV_4247 exoA; exodeoxyribonuclease III
CV_2475 recJ; exodeoxyribonuclease VII
CV_3903 lig; DNA ligase
CV_0779 polA; DNA-directed DNA polymerase I
CV_1893 uvrA; excinuclease ABC, subunit A
CV_3152 uvrB; excinuclease ABC subunit B
CV_1305 uvrC; excinuclease ABC subunit C
CV_0205 uvrD; DNA helicase II
CV_4193 rpoB; DNA-directed RNA polymerase, beta subunit
CV_4192 rpoC; DNA-directed RNA polymerase, beta subunit
CV_4160 rpoA; DNA-directed RNA polymerase (alpha subunit)
CV_3769 rpoZ; DNA-directed RNA polymerase omega chain
CV_1146 mfd; transcription-repair coupling factor
CV_3661 mutS; DNA mismatch repair protein
CV_1342 mutL; DNA mismatch repair protein
CV_1329 sbcB; exodeoxyribonuclease I
CV_3564 xseA; exodeoxyribonuclease, VII large subunit
CV_2690 xseB; exodeoxyribonuclease VII, small subunit
CV_0911 dnaE; DNA-directed DNA polymerase III, alpha subunit
CV_0002 dnaN; DNA-directed DNA polymerase, beta subunit
CV_2913 holC; DNA polymerase III, chi subunit
CV_0507 holA; DNA-directed DNA polymerase, delta subunit
CV_3722 holB; DNA-directed DNA polymerase III, delta subunit
CV_2946 probable DNA polymerase III
CV_2751 probable exonuclease
CV_1020 probable DNA-directed DNA polymerase III (epsilon subunit)
CV_1257 dnaQ; DNA-directed DNA polymerase, epsilon chain
CV_1610 dnaX; DNA polymerase subunits gamma and tau
CV_1889 ssb; single-strand DNA-binding protein
CV_2111 probable methyltransferase
CV_4076 recB; exodeoxyribonuclease V, beta subunit
CV_4077 recC; exodeoxyribonuclease V, gamma subunit
CV_4073 recD; exodeoxyribonuclease V, alpha subunit
CV_1607 recA; RecA protein
CV_4223 ruvA; holliday junction DNA helicase
CV_4215 ruvB; holliday junction DNA helicase ruvB
CV_4225 ruvC; crossover junction endodeoxyribonuclease
CV_1124 priA; primosomal protein N`
CV_3639 priB; primosomal replication protein
CV_2974 radA; DNA repair protein radA
CV_0933 recG; ATP-dependent DNA helicase
CV_2069 recO; DNA repair protein
CV_1612 recR; DNA repair DNA recombination zinc-finger protein
CV_2321 recN; DNA repair protein recN
CV_3548 rdgC; recombination associated protein RdgC
CV_1229 conserved hypothetical protein
CV_1756 conserved hypothetical protein
CV_2298 gyrA; DNA gyrase, subunit A
CV_0003 gyrB; DNA gyrase subunit B
CV_4269 topA; DNA topoisomerase
CV_2163 hupB2; DNA-binding protein hu-beta
CV_2554 hupB1; DNA-binding protein hu-beta
CV_3869 probable DNA-binding protein hu-beta
CV_0545 fis; DNA-binding protein Fis
CV_1354 ihfA; integration host factor alpha-subunit
CV_3045 himD; integration host factor beta-subunit
CV_0477 recQ; ATP-dependent DNA helicase recQ
CV_1243 probable trans-acting regulatory HvrA protein
CV_1363 probable trans-acting regulatory HvrA protein
CV_4363 dinP; DNA-damage-inducible protein P
CV_2612 umuC; umuC protein
CV_2332 umuD; SOS mutagenesis
CV_1606 oraA; regulatory protein RecX
CV_4068 rep; ATP-dependent DNA helicase
CV_1991 dinG; ATP-dependent DNA helicase
CV_2287 nrdA; ribonucleoside-diphosphate reductase system
CV_1446 nrdE; ribonucleotide reductase system
CV_2284 nrdB; ribonucleoside-diphosphate reductase system
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K05986 NUCS; nuclease S1 [EC:3.1.30.1]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04485 radA; DNA repair protein RadA/Sms
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K15342 cas1; CRISP-associated protein Cas1
K15342 cas1; CRISP-associated protein Cas1
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:cvi03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Chromobacterium violaceum