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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:cyt03030]
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03410 Base excision repair [PATH:cyt03410]
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03420 Nucleotide excision repair [PATH:cyt03420]
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03430 Mismatch repair [PATH:cyt03430]
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03440 Homologous recombination [PATH:cyt03440]
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 cce_0484 recJ1; single-stranded-DNA-specific exonuclease
cce_2425 recJ2; single-strand-DNA-specific exonuclease
cce_2001 ssb; single-stranded DNA-binding protein
cce_2200 ycf41; putative YCF41
cce_2613 recF; DNA repair and genetic recombination protein
cce_4546 recO; putative recombination protein O
cce_2826 recR; recombination protein
cce_4639 recA; recombination protein
cce_1208 ruvA; Holliday junction DNA helicase
cce_0503 ruvB; Holliday junction DNA helicase
cce_0063 ruvC; Holliday junction resolvase
cce_5226 putative RuvC-like Holliday junction resolvase
cce_5212 putative RuvC-like Holliday junction resolvase
cce_0327 recG; ATP-dependent DNA helicase
cce_4723 dnaE-c; DNA polymerase III alpha subunit, C-terminal intein/extein
cce_4077 dnaE-n; DNA polymerase III alpha subunit, N-terminal extein/intein
cce_1864 dnaN1; DNA polymerase III beta subunit
cce_4866 dnaN2; DNA polymerase III beta subunit
cce_2531 dnaX; DNA polymerase III gamma and tau subunits
cce_4945 DNA polymerase III gamma subunit
cce_1671 putative DNA polymerase III, delta subunit
cce_4946 putative DNA polymerase III, delta subunit
cce_4382 holB; DNA polymerase III, delta prime subunit
cce_2529 priA; primosomal protein N'
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:cyt03000]
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03021 Transcription machinery [BR:cyt03021]
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03019 Messenger RNA biogenesis [BR:cyt03019]
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03041 Spliceosome
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03011 Ribosome [BR:cyt03011]
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03009 Ribosome biogenesis [BR:cyt03009]
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03016 Transfer RNA biogenesis [BR:cyt03016]
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03012 Translation factors [BR:cyt03012]
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03110 Chaperones and folding catalysts [BR:cyt03110]
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04131 Membrane trafficking [BR:cyt04131]
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04121 Ubiquitin system [BR:cyt04121]
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03051 Proteasome [BR:cyt03051]
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03032 DNA replication proteins [BR:cyt03032]
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03036 Chromosome and associated proteins [BR:cyt03036]
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03400 DNA repair and recombination proteins [BR:cyt03400]
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cce_2428 phrA1; DNA photolyase
cce_3596 mutT; mutator protein MutT
cce_1268 nth; endonuclease III
cce_2066 NUDIX hydrolase
cce_4624 NUDIX hydrolase
cce_0096 putative NUDIX hydrolase
cce_2757 putative NUDIX hydrolase
cce_0813 NUDIX hydrolase
cce_0384 deoxyuridine 5'triphosphate nucleotidohydrolase
cce_2752 putative Deoxyribodipyrimidine photolyase
cce_1427 putative Uracil-DNA glycosylase superfamily protein
cce_3010 putative DNA-3-methyladenine glycosylase II
cce_4324 fpg; formamidopyrimidine-DNA glycosylase
cce_3992 xthA; exodeoxyribonuclease III
cce_4569 endonuclease V
cce_0484 recJ1; single-stranded-DNA-specific exonuclease
cce_2425 recJ2; single-strand-DNA-specific exonuclease
cce_1818 ligA; DNA ligase
cce_3691 uvrA; excinuclease ABC subunit A
cce_2046 uvrB; excinuclease ABC subunit B
cce_1434 uvrC; excinuclease ABC subunit C
cce_3987 pcrA; ATP-dependent DNA helicase
cce_2276 putative UvrD/REP helicase
cce_0635 hypothetical protein
cce_3488 rpoB; RNA polymerase beta subunit
cce_3838 rpoC1; RNA polymerase gamma-subunit
cce_3487 rpoC2; RNA polymerase beta prime subunit
cce_4039 rpoA; RNA polymerase alpha subunit
cce_0231 putative RNA polymerase, omega subunit
cce_0487 hypothetical protein
cce_3710 transcription-repair coupling factor
cce_2152 mutS1; DNA mismatch repair protein
cce_1888 mutS2; DNA mismatch repair protein
cce_0299 mutL; DNA mismatch repair protein
cce_5035 xseA; exodeoxyribonuclease VII large subunit
cce_5034 xseB; putative exodeoxyribonuclease VII small subunit
cce_4723 dnaE-c; DNA polymerase III alpha subunit, C-terminal intein/extein
cce_4077 dnaE-n; DNA polymerase III alpha subunit, N-terminal extein/intein
cce_1864 dnaN1; DNA polymerase III beta subunit
cce_4866 dnaN2; DNA polymerase III beta subunit
cce_1671 putative DNA polymerase III, delta subunit
cce_4946 putative DNA polymerase III, delta subunit
cce_4382 holB; DNA polymerase III, delta prime subunit
cce_2531 dnaX; DNA polymerase III gamma and tau subunits
cce_4945 DNA polymerase III gamma subunit
cce_2001 ssb; single-stranded DNA-binding protein
cce_2200 ycf41; putative YCF41
cce_2327 N6 adenine-specific DNA methyltransferase, D12 class
cce_1061 probable cytosine-specific DNA methyltransferase
cce_0014 putative site-specific DNA-methyltransferase
cce_4639 recA; recombination protein
cce_1208 ruvA; Holliday junction DNA helicase
cce_0503 ruvB; Holliday junction DNA helicase
cce_0063 ruvC; Holliday junction resolvase
cce_5226 putative RuvC-like Holliday junction resolvase
cce_5212 putative RuvC-like Holliday junction resolvase
cce_2529 priA; primosomal protein N'
cce_0362 putative exonuclease SbcC
cce_4575 probable exonuclease SbcD
cce_4001 DNA repair protein radA
cce_2613 recF; DNA repair and genetic recombination protein
cce_0327 recG; ATP-dependent DNA helicase
cce_4546 recO; putative recombination protein O
cce_2826 recR; recombination protein
cce_2438 recN; DNA repair protein
cce_0348 DUF48-containing protein
cce_1198 hypothetical protein
cce_4401 gyrA1; DNA gyrase A subunit
cce_4541 gyrA2; DNA gyrase A subunit
cce_0758 gyrB; DNA gyrase B subunit
cce_1235 topA1; DNA topoisomerase I
cce_4808 topA2; DNA topoisomerase I
cce_1277 putative histone-like DNA-binding protein
cce_1745 DNA binding protein HU
cce_5069 DNA binding protein HU
cce_1788 ATP-requiring DNA helicase
cce_2137 recQ; ATP-dependent DNA helicase
cce_1899 lexA; SOS function regulatory protein
cce_5074 LexA-like protein
cce_1600 putative Rad3-related DNA helicase
cce_1354 nrdA; ribonucleoside-diphosphate reductase alpha subunit
cce_1640 nrdB1; ribonucleoside-diphosphate reductase beta subunit
cce_4877 nrdB2; ribonucleoside-diphosphate reductase beta subunit
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K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K15342 cas1; CRISP-associated protein Cas1
K15342 cas1; CRISP-associated protein Cas1
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:cyt03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Crocosphaera subtropica