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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:das03030]
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03410 Base excision repair [PATH:das03410]
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03420 Nucleotide excision repair [PATH:das03420]
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03430 Mismatch repair [PATH:das03430]
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03440 Homologous recombination [PATH:das03440]
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 Daes_2309 single-stranded-DNA-specific exonuclease RecJ
Daes_2077 single-strand binding protein
Daes_1730 DNA repair protein RecO
Daes_1444 recombination protein RecR
Daes_2734 recA protein
Daes_2616 Holliday junction DNA helicase RuvA
Daes_2617 Holliday junction DNA helicase RuvB
Daes_2614 crossover junction endodeoxyribonuclease RuvC
Daes_1654 AAA-4 family protein
Daes_1445 helicase, RecD/TraA family
Daes_1592 ATP-dependent RecD/TraA family DNA helicase
Daes_0614 DNA polymerase III, alpha subunit
Daes_3320 DNA polymerase III, beta subunit
Daes_1442 DNA polymerase III, subunits gamma and tau
Daes_2826 DNA polymerase III delta
Daes_1054 DNA polymerase III, delta prime subunit, putative
Daes_3011 Exonuclease RNase T and DNA polymerase III
Daes_1262 primosomal protein N'
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:das03000]
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03021 Transcription machinery [BR:das03021]
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03019 Messenger RNA biogenesis [BR:das03019]
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03041 Spliceosome
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03011 Ribosome [BR:das03011]
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03009 Ribosome biogenesis [BR:das03009]
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03016 Transfer RNA biogenesis [BR:das03016]
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03012 Translation factors [BR:das03012]
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03110 Chaperones and folding catalysts [BR:das03110]
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04131 Membrane trafficking [BR:das04131]
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04121 Ubiquitin system
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03051 Proteasome [BR:das03051]
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03032 DNA replication proteins [BR:das03032]
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03036 Chromosome and associated proteins [BR:das03036]
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03400 DNA repair and recombination proteins [BR:das03400]
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Daes_3122 methylated-DNA/protein-cysteine methyltransferase
Daes_0071 deoxyribodipyrimidine photolyase
Daes_1920 A/G-specific adenine glycosylase
Daes_1410 endonuclease III
Daes_1591 ERCC4 domain protein
Daes_2285 NUDIX hydrolase
Daes_1311 NUDIX hydrolase
Daes_1520 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
Daes_0130 formamidopyrimidine-DNA glycosylase
Daes_3014 exodeoxyribonuclease III
Daes_3292 apurinic endonuclease Apn1
Daes_2309 single-stranded-DNA-specific exonuclease RecJ
Daes_1807 DNA ligase, NAD-dependent
Daes_3068 excinuclease ABC, A subunit
Daes_1808 excinuclease ABC, B subunit
Daes_1233 excinuclease ABC, C subunit
Daes_1768 UvrD/REP helicase
Daes_2260 DNA-directed RNA polymerase, beta subunit
Daes_2259 DNA-directed RNA polymerase, beta' subunit
Daes_2228 DNA-directed RNA polymerase, alpha subunit
Daes_1371 DNA-directed RNA polymerase, omega subunit
Daes_1734 transcription-repair coupling factor
Daes_1544 DNA mismatch repair protein MutS
Daes_1502 DNA mismatch repair protein MutS domain protein
Daes_0816 DNA mismatch repair protein MutL
Daes_0907 exodeoxyribonuclease VII, large subunit
Daes_0909 Exonuclease VII small subunit
Daes_0614 DNA polymerase III, alpha subunit
Daes_3320 DNA polymerase III, beta subunit
Daes_2826 DNA polymerase III delta
Daes_1054 DNA polymerase III, delta prime subunit, putative
Daes_3011 Exonuclease RNase T and DNA polymerase III
Daes_1442 DNA polymerase III, subunits gamma and tau
Daes_2077 single-strand binding protein
Daes_2381 D12 class N6 adenine-specific DNA methyltransferase
Daes_1445 helicase, RecD/TraA family
Daes_1592 ATP-dependent RecD/TraA family DNA helicase
Daes_2734 recA protein
Daes_2616 Holliday junction DNA helicase RuvA
Daes_2617 Holliday junction DNA helicase RuvB
Daes_2614 crossover junction endodeoxyribonuclease RuvC
Daes_1262 primosomal protein N'
Daes_0283 DNA repair protein RadA
Daes_1654 AAA-4 family protein
Daes_1730 DNA repair protein RecO
Daes_1444 recombination protein RecR
Daes_2859 SMC domain protein
Daes_1935 hypothetical protein
Daes_3318 DNA gyrase, A subunit
Daes_3319 DNA gyrase, B subunit
Daes_0253 DNA topoisomerase I
Daes_1066 histone family protein DNA-binding protein
Daes_1498 histone family protein DNA-binding protein
Daes_2431 histone family protein DNA-binding protein
Daes_3162 histone family protein DNA-binding protein
Daes_1485 histone family protein DNA-binding protein
Daes_0230 ATP-dependent DNA helicase RecQ
Daes_3000 DNA-directed DNA polymerase
Daes_0377 DNA-directed DNA polymerase
Daes_0378 Peptidase S24/S26A/S26B, conserved region
Daes_3096 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
Daes_2148 phosphoesterase RecJ domain protein
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04485 radA; DNA repair protein RadA/Sms
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:das03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Pseudodesulfovibrio aespoeensis