Messenger RNA Biogenesis - Oryza sativa japonica (Japanese rice) (RAPDB)

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     KO
 Eukaryotic type
   mRNA processing factors
   mRNA surveillance and transport factors
     Transport factors
       EJC complex
       TREX complex
       TREX-2 complex
       Nuclear pore complex
         Os08t0176800-01 Os08g0176800; Similar to mRNA-associated protein mrnp 41 (Rae1 protein homolog).
         Os01t0635400-01 Os01g0635400; Similar to mRNA-associated protein mrnp 41 (Rae1 protein homolog).
         Os02t0135800-01 Os02g0135800; Similar to Sec13-like protein (Fragment).
         Os03t0831800-01 Os03g0831800; Similar to Sec13p.
         Os01t0746200-01 Os01g0746200; Nucleoporin, Common symbiosis signaling (SYM) pathway
         Os07t0295400-01 Os07g0295400; Conserved hypothetical protein.
         Os04t0608400-01 Os04g0608400; Nuclear pore complex, nucleoporin 88 domain containing protein.
         Os03t0349000-01 Os03g0349000; Nucleoporin interacting component family protein.
         Os12t0165900-01 Os12g0165900; Hypothetical conserved gene.
         Os12t0166000-00 Os12g0166000; Conserved hypothetical protein.
         Os01t0383900-01 Os01g0383900; Peptidase S59, nucleoporin family protein.
         Os03t0172000-01 Os03g0172000; Peptidase S59, nucleoporin family protein.
         Os03t0225500-01 Os03g0225500; Nucleoporin, Common symbiosis signaling (SYM) pathway
         Os06t0305200-01 Os06g0305200; Nucleoporin, non-repetitive/WGA-negative domain containing protein.
         Os01t0200500-01 Os01g0200500; MPPN family protein.
         Os05t0520100-00 Os05g0520100; Similar to MPPN domain containing protein.
         Os02t0202250-01 Os02g0202250; Hypothetical conserved gene.
         Os03t0765400-01 Os03g0765400; Similar to nucleoporin p58/p45.
         Os09t0453500-01 Os09g0453500; Spectrin repeat containing protein.
         Os06t0704300-01 Os06g0704300; Zinc finger, CCCH-type domain containing protein.
         Os02t0684300-01 Os02g0684300; Nucleoporin protein Ndc1-Nup domain containing protein.
         Os01t0620100-01 Os01g0620100; WD40 repeat-like domain containing protein.
         Os11t0132700-01 Os11g0132700; WD40 repeat-like domain containing protein.
         Os12t0129400-01 Os12g0129400; Similar to predicted protein.
         Os02t0596100-01 Os02g0596100; GLE1-like domain containing protein.
K14298 RAE1; mRNA export factor 
K14298 RAE1; mRNA export factor 
K14004 SEC13; protein transport protein SEC13 
K14004 SEC13; protein transport protein SEC13 
K14304 NUP85; nuclear pore complex protein Nup85 
K14308 NUP54; nuclear pore complex protein Nup54 
K14318 NUP88; nuclear pore complex protein Nup88 
K14309 NUP93; nuclear pore complex protein Nup93 
K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
K14300 NUP133; nuclear pore complex protein Nup133 
K14312 NUP155; nuclear pore complex protein Nup155 
K14313 NUP35; nuclear pore complex protein Nup53 
K14313 NUP35; nuclear pore complex protein Nup53 
K14310 NUP205; nuclear pore complex protein Nup205 
K14307 NUPL1; nucleoporin p58/p45 
K14307 NUPL1; nucleoporin p58/p45 
K14321 NUPL2; nucleoporin-like protein 2 
K14315 NDC1; nucleoporin NDC1 
K14299 SEH1; nucleoporin SEH1 
K14320 AAAS; aladin 
K14320 AAAS; aladin 
K18723 GLE1; nucleoporin GLE1 
       Ran-mediated transport factors
       eIF4F and regulatory proteins
       APOBEC1-ACF complex
       Other transport factors
     Surveillance factors
     Factors involved in mRNA localization
     mRNA cycle factors
   mRNA degradation factors
 
 Prokaryotic type

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Last updated: April 9, 2024