EC55989_4512 lysC; aspartokinase III
       EC55989_0002 thrA; fused aspartokinase I; homoserine dehydrogenase I
       EC55989_4422 metL; fused aspartokinase II; homoserine dehydrogenase II
       EC55989_3843 asd; aspartate-semialdehyde dehydrogenase, NAD(P)-binding
       EC55989_2761 dapA; dihydrodipicolinate synthase
       EC55989_0030 dapB; dihydrodipicolinate reductase
       EC55989_0159 dapD; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
       EC55989_3765 argD; bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase
       EC55989_2752 dapE; N-succinyl-diaminopimelate deacylase
       EC55989_4283 dapF; diaminopimelate epimerase
       EC55989_3115 lysA; diaminopimelate decarboxylase, PLP-binding
       EC55989_0081 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase
       EC55989_0082 murF; UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase

K00928 lysC; aspartate kinase [EC:2.7.2.4]
K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]

       EC55989_0026 lspA; prolipoprotein signal peptidase (signal peptidase II)
       EC55989_3381 pppA; bifunctional prepilin leader peptidase and methylase
       EC55989_3739 putative bifunctional prepilin peptidase HopD: leader peptidase; methyl transferase (General Secretory Pathway)
       EC55989_1083 hyaD; protein involved in processing of HyaA and HyaB proteins
       EC55989_3410 hybD; maturation element for hydrogenase 2
       EC55989_2983 hycI; protease involved in processing C-terminal end of HycE
       EC55989_2792 guaA; GMP synthetase (glutamine aminotransferase)
       EC55989_1460 puuD; gamma-Glu-GABA hydrolase
       EC55989_2429 spr; putative peptidase, outer membrane lipoprotein
       EC55989_1823 ydhO; putative exported hydrolase
       EC55989_1876 nlpC; putative peptidase lipoprotein
       EC55989_2556 purF; amidophosphoribosyltransferase
       EC55989_3630 gltB; glutamate synthase, large subunit
       EC55989_4204 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase
       EC55989_0660 asnB; asparagine synthetase B
       EC55989_2193 hchA; Hsp31 molecular chaperone
       EC55989_3573 yhbO; putative intracellular protease
       EC55989_0435 yajL; conserved hypothetical protein
       EC55989_2517 elaD; putative enzyme
       EC55989_2224 erfK; conserved hypothetical protein; putative NAD(P)-binding Rossmann-fold domain
       EC55989_1845 ynhG; conserved hypothetical protein
       EC55989_0862 ybiS; conserved hypothetical protein
       EC55989_1225 ycfS; conserved hypothetical protein
       EC55989_0971 ycbB; putative exported enzyme
       EC55989_0981 pepN; aminopeptidase N
       EC55989_3936 prlC; oligopeptidase A
       EC55989_1679 dcp; dipeptidyl carboxypeptidase II
       EC55989_1620 ddpX; D-ala-D-ala dipeptidase, Zn-dependent
       EC55989_2112 conserved hypothetical protein
       EC55989_3097 ptr; protease III
       EC55989_1626 pqqL; putative membrane-associated peptidase
       EC55989_4818 pepA; aminopeptidase A, a cyteinylglycinase
       EC55989_2808 pepB; aminopeptidase B
       EC55989_2752 dapE; N-succinyl-diaminopimelate deacylase
       EC55989_1240 pepT; peptidase T
       EC55989_0261 pepD; aminoacyl-histidine dipeptidase (peptidase D)
       EC55989_1503 abgA; putative peptidase, para-aminobenzoyl-glutamate utilization protein
       EC55989_1502 abgB; putative peptidase, aminobenzoyl-glutamate utilization protein
       EC55989_0530 allC; allantoate amidohydrolase
       EC55989_2035 yebA; putative metallopeptidase
       EC55989_0161 map; methionine aminopeptidase
       EC55989_4322 pepQ; proline dipeptidase
       EC55989_3196 pepP; proline aminopeptidase P II
       EC55989_2681 ypdF; Xaa-Pro and Met-Xaa peptidase
       EC55989_3026 iap; aminopeptidase in alkaline phosphatase isozyme conversion
       EC55989_4994 iadA; isoaspartyl dipeptidase
       EC55989_3596 ftsH; protease, ATP-dependent zinc-metallo
       EC55989_4376 frvX; putative endo-1,4-beta-glucanase
       EC55989_2006 htpX; membrane-associated Zn-dependent endopeptidase; self-cleaved
       EC55989_0954 ycaL; putative lipoprotein with metallohydrolase domain
       EC55989_3228 yggG; putative peptidase
       EC55989_2779 yfgC; putative peptidase
       EC55989_0170 yaeL; zinc metallopeptidase
       EC55989_2572 mepA; murein DD-endopeptidase
       EC55989_2200 yeeI; conserved hypothetical protein
       EC55989_1763 ydgD; putative exported metallopeptidase
       EC55989_0156 degP; serine endoprotease (protease Do), membrane-associated
       EC55989_3647 degQ; serine endoprotease, periplasmic
       EC55989_3648 degS; serine endoprotease, periplasmic
       EC55989_2023 ptrB; protease II
       EC55989_0624 dacA; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
       EC55989_0884 dacC; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
       EC55989_2269 dacD; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
       EC55989_2384 pbpG; D-alanyl-D-alanine endopeptidase
       EC55989_0380 ampH; beta-lactamase/D-alanine carboxypeptidase
       EC55989_2719 murQ; D-lactyl ether N-acetylmuramic-6-phosphate acid etherase; beta-lactamase family
       EC55989_3600 dacB; D-alanyl-D-alanine carboxypeptidase
       EC55989_0451 clpP; proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases
       EC55989_0453 lon; DNA-binding ATP-dependent protease La
       EC55989_1004 ycbZ; putative ATP-dependent protease
       EC55989_4536 lexA; DNA-binding transcriptional repressor of SOS regulon
       EC55989_1278 umuD; DNA polymerase V, subunit D
       EC55989_2857 lepB; leader peptidase (signal peptidase I)
       EC55989_2007 prc; carboxy-terminal protease for penicillin-binding protein 3
       EC55989_1935 sppA; protease IV (signal peptide peptidase)
       EC55989_1429 sohB; putative inner membrane peptidase
       EC55989_0794 C; Minor capsid protein C from bacteriophage origin
       EC55989_4506 pepE; (alpha)-aspartyl dipeptidase
       EC55989_3831 glpG; putative intramembrane serine protease
       EC55989_1288 ldcA; L,D-carboxypeptidase A
       EC55989_4410 hslV; peptidase component of the HslUV protease
       EC55989_0873 iaaA; isoaspartyl dipeptidase with L-asparaginase activity
       EC55989_3855 ggt; gamma-glutamyltranspeptidase
       EC55989_2340 yegQ; putative peptidase
       EC55989_1568 ydcP; putative peptidase
       EC55989_3579 yhbV; protease
       EC55989_3578 yhbU; peptidase (collagenase-like)
       EC55989_4793 pmbA; peptidase required for the maturation and secretion of the antibiotic peptide MccB17
       EC55989_3657 tldD; putative peptidase
       EC55989_2464 eco; ecotin, a serine protease inhibitor
       EC55989_2805 yfhM; conserved hypothetical protein
       EC55989_2476 putative large extracellular alpha-helical protein
       EC55989_4730 hflC; modulator for HflB protease specific for phage lambda cII repressor
       EC55989_4729 hflK; modulator for HflB protease specific for phage lambda cII repressor

K03101 lspA; signal peptidase II [EC:3.4.23.36]
K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
K02506 hofD; leader peptidase HopD [EC:3.4.23.43]
K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
K08315 hycI; hydrogenase 3 maturation protease [EC:3.4.23.51]
K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
K09473 puuD; gamma-glutamyl-gamma-aminobutyrate hydrolase [EC:3.5.1.94]
K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-]
K13695 nlpC; probable lipoprotein NlpC
K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
K05523 hchA; D-lactate dehydratase / protein deglycase [EC:4.2.1.130 3.5.1.124]
K05520 yhbO; deglycase [EC:3.5.1.124]
K03152 thiJ; protein deglycase [EC:3.5.1.124]
K18015 elaD; deubiquitinase [EC:3.4.22.-]
K16291 erfK; L,D-transpeptidase ErfK/SrfK
K19234 ynhG; L,D-transpeptidase YnhG
K19235 ybiS; L,D-transpeptidase YbiS
K19236 ycfS; L,D-transpeptidase YcfS
K21470 ycbB; L,D-transpeptidase YcbB
K01256 pepN; aminopeptidase N [EC:3.4.11.2]
K01414 prlC; oligopeptidase A [EC:3.4.24.70]
K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
K01407 ptrA; protease III [EC:3.4.24.55]
K07263 pqqL; zinc protease [EC:3.4.24.-]
K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
K01270 pepD; dipeptidase D [EC:3.4.13.-]
K12940 abgA; aminobenzoyl-glutamate utilization protein A
K12941 abgB; aminobenzoyl-glutamate utilization protein B
K02083 allC; allantoate deiminase [EC:3.5.3.9]
K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
K08326 ypdF; aminopeptidase [EC:3.4.11.-]
K09612 iap; alkaline phosphatase isozyme conversion protein [EC:3.4.11.-]
K01305 iadA; beta-aspartyl-dipeptidase (metallo-type) [EC:3.4.19.-]
K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
K18530 frvX; putative aminopeptidase FrvX [EC:3.4.11.-]
K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
K07387 K07387; metalloprotease [EC:3.4.24.-]
K07387 K07387; metalloprotease [EC:3.4.24.-]
K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
K09933 mtfA; MtfA peptidase
K04775 ydgD; protease YdgD [EC:3.4.21.-]
K04771 degP; serine protease Do [EC:3.4.21.107]
K04772 degQ; serine protease DegQ [EC:3.4.21.-]
K04691 hhoB; serine protease DegS [EC:3.4.21.-]
K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-]
K21469 pbp4b; serine-type D-Ala-D-Ala carboxypeptidase [EC:3.4.16.4]
K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K03100 lepB; signal peptidase I [EC:3.4.21.89]
K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
K04773 sppA; protease IV [EC:3.4.21.-]
K04774 sohB; serine protease SohB [EC:3.4.21.-]
K21511 C; Enterobacteria phage capsid assembly protease [EC:3.4.21.-]
K05995 pepE; dipeptidase E [EC:3.4.13.21]
K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105]
K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
K08303 prtC; U32 family peptidase [EC:3.4.-.-]
K24847 rlhA; 23S rRNA 5-hydroxycytidine C2501 synthase
K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV
K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU
K03592 pmbA; PmbA protein
K03568 tldD; TldD protein
K08276 eco; ecotin
K06894 yfhM; alpha-2-macroglobulin
K06894 yfhM; alpha-2-macroglobulin
K04087 hflC; modulator of FtsH protease HflC
K04088 hflK; modulator of FtsH protease HflK