ECIAI39_1423 nth; DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
       ECIAI39_2788 ung; uracil-DNA-glycosylase
       ECIAI39_3385 mutY; adenine DNA glycosylase
       ECIAI39_4153 mutM; formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
       ECIAI39_0666 nei; endonuclease VIII; 5-formyluracil/5-hydroxymethyluracil DNA glycosylase
       ECIAI39_0945 alkA; 3-methyl-adenine DNA glycosylase II
       ECIAI39_4057 tag; 3-methyl-adenine DNA glycosylase I, constitutive
       ECIAI39_3565 ygjF; G/U mismatch-specific DNA glycosylase
       ECIAI39_1305 xthA; exonuclease III
       ECIAI39_2299 nfo; endonuclease IV with intrinsic 3'-5' exonuclease activity
       ECIAI39_3137 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease
       ECIAI39_3308 recJ; ssDNA exonuclease, 5'--> 3'-specific
       ECIAI39_4168 ligB; DNA ligase, NAD(+)-dependent
       ECIAI39_2556 ligA; DNA ligase, NAD(+)-dependent

K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]

       ECIAI39_1684 ogt; O-6-alkylguanine-DNA:cysteine-protein methyltransferase
       ECIAI39_0660 phr; deoxyribodipyrimidine photolyase, FAD-binding
       ECIAI39_2788 ung; uracil-DNA-glycosylase
       ECIAI39_3385 mutY; adenine DNA glycosylase
       ECIAI39_1423 nth; DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
       ECIAI39_0102 mutT; nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP
       ECIAI39_4158 dut; deoxyuridinetriphosphatase
       ECIAI39_2350 ada; fused DNA-binding transcriptional dual regulator; O6-methylguanine-DNA methyltransferase
       ECIAI39_2349 alkB; oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions
       ECIAI39_3565 ygjF; G/U mismatch-specific DNA glycosylase
       ECIAI39_0945 alkA; 3-methyl-adenine DNA glycosylase II
       ECIAI39_4057 tag; 3-methyl-adenine DNA glycosylase I, constitutive
       ECIAI39_4153 mutM; formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
       ECIAI39_0666 nei; endonuclease VIII; 5-formyluracil/5-hydroxymethyluracil DNA glycosylase
       ECIAI39_1305 xthA; exonuclease III
       ECIAI39_2299 nfo; endonuclease IV with intrinsic 3'-5' exonuclease activity
       ECIAI39_4388 nfi; endonuclease V
       ECIAI39_3308 recJ; ssDNA exonuclease, 5'--> 3'-specific
       ECIAI39_4168 ligB; DNA ligase, NAD(+)-dependent
       ECIAI39_2556 ligA; DNA ligase, NAD(+)-dependent
       ECIAI39_3137 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease
       ECIAI39_4479 uvrA; ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC
       ECIAI39_0755 uvrB; excinulease of nucleotide excision repair, DNA damage recognition component
       ECIAI39_1142 uvrC; excinuclease UvrABC, endonuclease subunit
       ECIAI39_1313 ydjQ; endonuclease of nucleotide excision repair
       ECIAI39_2974 uvrD; DNA-dependent ATPase I and helicase II
       ECIAI39_4372 rpoB; RNA polymerase, beta subunit
       ECIAI39_4373 rpoC; RNA polymerase, beta prime subunit
       ECIAI39_3790 rpoA; RNA polymerase, alpha subunit
       ECIAI39_4171 rpoZ; RNA polymerase, omega subunit
       ECIAI39_2046 mfd; transcription-repair coupling factor
       ECIAI39_2923 mutS; methyl-directed mismatch repair protein
       ECIAI39_4634 mutL; methyl-directed mismatch repair protein
       ECIAI39_3251 mutH; methyl-directed mismatch repair protein
       ECIAI39_1005 sbcB; exonuclease I
       ECIAI39_2707 xseA; exonuclease VII, large subunit
       ECIAI39_0254 xseB; exonuclease VII small subunit
       ECIAI39_1206 exoX; DNA exonuclease X
       ECIAI39_0187 dnaE; DNA polymerase III alpha subunit
       ECIAI39_4305 dnaN; DNA polymerase III, beta subunit
       ECIAI39_4732 holC; DNA polymerase III, chi subunit
       ECIAI39_0615 holA; DNA polymerase III, delta subunit
       ECIAI39_2062 holB; DNA polymerase III, delta prime subunit
       ECIAI39_0434 dnaQ; DNA polymerase III epsilon subunit
       ECIAI39_0201 dnaX; DNA polymerase III/DNA elongation factor III, tau and gamma subunits
       ECIAI39_4843 holD; DNA polymerase III, psi subunit
       ECIAI39_1208 holE; DNA polymerase III, theta subunit
       ECIAI39_4480 ssb; Single-stranded DNA-binding protein
       ECIAI39_0512 putative single-stranded DNA-binding protein
       ECIAI39_3865 dam; DNA adenine methylase
       ECIAI39_1096 vsr; DNA mismatch endonuclease of very short patch repair
       ECIAI39_3239 recB; exonuclease V (RecBCD complex), beta subunit
       ECIAI39_3241 recC; exonuclease V (RecBCD complex), gamma chain
       ECIAI39_3238 recD; exonuclease V (RecBCD complex), alpha chain
       ECIAI39_2885 recA; DNA strand exchange and recombination protein with protease and nuclease activity
       ECIAI39_1188 ruvA; component of RuvABC resolvasome, regulatory subunit
       ECIAI39_1189 ruvB; ATP-dependent DNA helicase, component of RuvABC resolvasome
       ECIAI39_1186 ruvC; component of RuvABC resolvasome, endonuclease
       ECIAI39_4865 rusA; Crossover junction endodeoxyribonuclease
       ECIAI39_3059 priA; Primosome factor n' (replication factor Y)
       ECIAI39_0204 priC; primosomal replication protein N''
       ECIAI39_4835 dnaT; DNA biosynthesis protein (primosomal protein I)
       ECIAI39_0285 sbcC; exonuclease, dsDNA, ATP-dependent
       ECIAI39_0284 sbcD; exonuclease, dsDNA, ATP-dependent
       ECIAI39_4921 radA; repair protein radA homolog
       ECIAI39_4304 recF; gap repair protein
       ECIAI39_4174 recG; ATP-dependent DNA helicase
       ECIAI39_2770 recO; gap repair protein
       ECIAI39_0199 recR; gap repair protein
       ECIAI39_2819 recN; recombination and repair protein
       ECIAI39_0288 rdgC; DNA-binding protein, non-specific
       ECIAI39_2325 yejH; putative nucleic acid ATP-dependent helicase
       ECIAI39_4736 yjgR; putative ATPase
       ECIAI39_2369 gyrA; DNA gyrase (type II topoisomerase), subunit A
       ECIAI39_4303 gyrB; DNA gyrase, subunit B
       ECIAI39_1613 topA; DNA topoisomerase I, omega subunit
       ECIAI39_4390 hupA; HU, DNA-binding transcriptional regulator, alpha subunit
       ECIAI39_0233 hupB; HU, DNA-binding transcriptional regulator, beta subunit
       ECIAI39_3761 fis; global DNA-binding transcriptional dual regulator
       ECIAI39_1341 ihfA; integration host factor (IHF), DNA-binding protein, alpha subunit
       ECIAI39_2235 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit
       ECIAI39_3917 conserved hypothetical protein; putative superfamily II DNA helicase
       ECIAI39_3187 recQ; ATP-dependent DNA helicase
       ECIAI39_1572 hns; global nucleic acid-binding transcriptional dual regulator H-NS
       ECIAI39_0418 dinB; DNA polymerase IV
       ECIAI39_1886 umuC; DNA polymerase V, subunit C
       ECIAI39_1887 umuD; DNA polymerase V, subunit D
       ECIAI39_4464 lexA; DNA-binding transcriptional repressor of SOS regulon
       ECIAI39_4864 putative LexA repressor
       ECIAI39_0063 polB; DNA polymerase II
       ECIAI39_4166 dinD; DNA-damage-inducible protein
       ECIAI39_2102 dinI; DNA damage-inducible protein I
       ECIAI39_0886 putative damage-inducible protein dinI-like
       ECIAI39_2884 recX; regulatory protein for RecA
       ECIAI39_3891 yhgA; putative transposase
       ECIAI39_2454 yfcI; putative transposase
       ECIAI39_0132 yadD; putative transposase
       ECIAI39_4814 Conserved hypothetical protein, putative transposase
       ECIAI39_2387 yfaD; Conserved hypothetical protein, putative transposase
       ECIAI39_3009 rep; DNA helicase and single-stranded DNA-dependent ATPase
       ECIAI39_2184 helD; DNA helicase IV
       ECIAI39_0776 dinG; ATP-dependent DNA helicase
       ECIAI39_1245 yoaA; putative ATP-dependent helicase
       ECIAI39_1403 lhr; putative ATP-dependent helicase
       ECIAI39_2865 nrdE; ribonucleoside-diphosphate reductase 2, alpha subunit
       ECIAI39_2376 nrdA; ribonucleoside diphosphate reductase 1, alpha subunit
       ECIAI39_2866 nrdF; ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
       ECIAI39_2377 nrdB; ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like

K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K05984 cho; excinuclease Cho [EC:3.1.25.-]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04067 priC; primosomal replication protein N''
K02317 dnaT; DNA replication protein DnaT
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K19789 radD; DNA repair protein RadD
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K14623 dinD; DNA-damage-inducible protein D
K12149 dinI; DNA-damage-inducible protein I
K12149 dinI; DNA-damage-inducible protein I
K03565 recX; regulatory protein
K01157 rpnA; recombination-promoting nuclease RpnA [EC:3.1.21.-]
K24087 rpnB; recombination-promoting nuclease RpnB [EC:3.1.21.-]
K24088 rpnC; recombination-promoting nuclease RpnC [EC:3.1.21.-]
K24089 rpnD; recombination-promoting nuclease RpnD [EC:3.1.21.-]
K24090 rpnE; recombination-promoting nuclease RpnE
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03658 helD; DNA helicase IV [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]