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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:eoc03030]
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 CE10_2127 holE; DNA polymerase III, theta subunit
CE10_0220 dnaQ; DNA polymerase III epsilon subunit
CE10_0186 dnaE; DNA polymerase III alpha subunit
CE10_0442 dnaX; DNA polymerase III/DNA elongation factor III, tau and gamma subunits
CE10_1179 holB; DNA polymerase III, delta prime subunit
CE10_0638 holA; DNA polymerase III, delta subunit
CE10_5118 holD; DNA polymerase III, psi subunit
CE10_5004 holC; DNA polymerase III, chi subunit
CE10_4346 dnaN; DNA polymerase III, beta subunit
CE10_2474 putative replicative DNA helicase
CE10_4765 dnaB; replicative DNA helicase
CE10_3595 dnaG; DNA primase
CE10_4773 ssb; single-stranded DNA-binding protein
CE10_0219 rnhA; ribonuclease HI, degrades RNA of DNA-RNA hybrids
CE10_0185 rnhB; ribonuclease HII, degrades RNA of DNA-RNA hybrids
CE10_4523 polA; fused DNA polymerase I 5'-3' polymerase/3'-5' exonuclease/5'-3' exonuclease
CE10_2794 ligA; DNA ligase, NAD(+)-dependent
CE10_4205 ligB; DNA ligase, NAD(+)-dependent
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K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
K02316 dnaG; DNA primase [EC:2.7.7.101]
K03111 ssb; single-strand DNA-binding protein
K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
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03410 Base excision repair [PATH:eoc03410]
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03420 Nucleotide excision repair [PATH:eoc03420]
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03430 Mismatch repair [PATH:eoc03430]
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CE10_3160 mutS; methyl-directed mismatch repair protein
CE10_4909 mutL; methyl-directed mismatch repair protein
CE10_3259 mutH; methyl-directed mismatch repair protein
CE10_4461 uvrD; DNA-dependent ATPase I and helicase II
CE10_2328 sbcB; exonuclease I
CE10_2936 xseA; exonuclease VII, large subunit
CE10_0389 xseB; exonuclease VII small subunit
CE10_2129 exoX; DNA exonuclease X
CE10_3331 recJ; ssDNA exonuclease, 5' --3'-specific
CE10_4773 ssb; single-stranded DNA-binding protein
CE10_0186 dnaE; DNA polymerase III alpha subunit
CE10_4346 dnaN; DNA polymerase III, beta subunit
CE10_0442 dnaX; DNA polymerase III/DNA elongation factor III, tau and gamma subunits
CE10_0638 holA; DNA polymerase III, delta subunit
CE10_1179 holB; DNA polymerase III, delta prime subunit
CE10_0220 dnaQ; DNA polymerase III epsilon subunit
CE10_2127 holE; DNA polymerase III, theta subunit
CE10_5004 holC; DNA polymerase III, chi subunit
CE10_5118 holD; DNA polymerase III, psi subunit
CE10_2794 ligA; DNA ligase, NAD(+)-dependent
CE10_4205 ligB; DNA ligase, NAD(+)-dependent
CE10_3904 dam; DNA adenine methyltransferase
|
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
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03440 Homologous recombination [PATH:eoc03440]
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CE10_3331 recJ; ssDNA exonuclease, 5' --3'-specific
CE10_4773 ssb; single-stranded DNA-binding protein
CE10_4345 recF; gap repair protein
CE10_2998 recO; gap repair protein
CE10_0444 recR; gap repair protein
CE10_3122 recA; DNA strand exchange and recombination protein with protease and nuclease activity
CE10_4523 polA; fused DNA polymerase I 5'-3' polymerase/3'-5' exonuclease/5'-3' exonuclease
CE10_2147 ruvA; component of RuvABC resolvasome, regulatory subunit
CE10_2146 ruvB; ATP-dependent DNA helicase, component of RuvABC resolvasome
CE10_2149 ruvC; component of RuvABC resolvasome, endonuclease
CE10_4211 recG; ATP-dependent DNA helicase
CE10_3247 recB; exonuclease V (RecBCD complex), beta subunit
CE10_3249 recC; exonuclease V (RecBCD complex), gamma chain
CE10_3246 recD; exonuclease V (RecBCD complex), alpha chain
CE10_0186 dnaE; DNA polymerase III alpha subunit
CE10_4346 dnaN; DNA polymerase III, beta subunit
CE10_0442 dnaX; DNA polymerase III/DNA elongation factor III, tau and gamma subunits
CE10_0638 holA; DNA polymerase III, delta subunit
CE10_1179 holB; DNA polymerase III, delta prime subunit
CE10_0220 dnaQ; DNA polymerase III epsilon subunit
CE10_2127 holE; DNA polymerase III, theta subunit
CE10_5004 holC; DNA polymerase III, chi subunit
CE10_5118 holD; DNA polymerase III, psi subunit
CE10_4605 priA; Primosome factor n' (replication factor Y)
CE10_0439 priC; primosomal replication protein N''
CE10_5106 dnaT; DNA biosynthesis protein (primosomal protein I)
CE10_2921 putative primosomal protein from phage
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04067 priC; primosomal replication protein N''
K02317 dnaT; DNA replication protein DnaT
K02317 dnaT; DNA replication protein DnaT
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:eoc03000]
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03021 Transcription machinery [BR:eoc03021]
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03019 Messenger RNA biogenesis [BR:eoc03019]
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03041 Spliceosome
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03011 Ribosome [BR:eoc03011]
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03009 Ribosome biogenesis [BR:eoc03009]
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03016 Transfer RNA biogenesis [BR:eoc03016]
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03012 Translation factors [BR:eoc03012]
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03110 Chaperones and folding catalysts [BR:eoc03110]
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04131 Membrane trafficking [BR:eoc04131]
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04121 Ubiquitin system [BR:eoc04121]
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03051 Proteasome [BR:eoc03051]
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03032 DNA replication proteins [BR:eoc03032]
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CE10_0219 rnhA; ribonuclease HI, degrades RNA of DNA-RNA hybrids
CE10_2241 DNA cytosine methyltransferase
CE10_3055 DNA cytosine methyltransferase
CE10_C1 type II DNA-methyltransferase
CE10_4680 hupA; HU, DNA-binding transcriptional regulator, alpha subunit
CE10_0413 hupB; HU, DNA-binding transcriptional regulator, beta subunit
CE10_1992 ihfA; integration host factor (IHF), DNA-binding protein, alpha subunit
CE10_0940 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit
CE10_4347 dnaA; chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator
CE10_2474 putative replicative DNA helicase
CE10_4765 dnaB; replicative DNA helicase
CE10_5105 dnaC; DNA biosynthesis protein
CE10_2475 putative DnaC-like replication protein
CE10_3595 dnaG; DNA primase
CE10_4773 ssb; single-stranded DNA-binding protein
CE10_0186 dnaE; DNA polymerase III alpha subunit
CE10_4346 dnaN; DNA polymerase III, beta subunit
CE10_5004 holC; DNA polymerase III, chi subunit
CE10_0638 holA; DNA polymerase III, delta subunit
CE10_1179 holB; DNA polymerase III, delta prime subunit
CE10_0220 dnaQ; DNA polymerase III epsilon subunit
CE10_0442 dnaX; DNA polymerase III/DNA elongation factor III, tau and gamma subunits
CE10_5118 holD; DNA polymerase III, psi subunit
CE10_2127 holE; DNA polymerase III, theta subunit
CE10_0185 rnhB; ribonuclease HII, degrades RNA of DNA-RNA hybrids
CE10_4523 polA; fused DNA polymerase I 5'-3' polymerase/3'-5' exonuclease/5'-3' exonuclease
CE10_2794 ligA; DNA ligase, NAD(+)-dependent
CE10_4205 ligB; DNA ligase, NAD(+)-dependent
CE10_1882 tus; inhibitor of replication at Ter, DNA-binding protein
CE10_3904 dam; DNA adenine methyltransferase
CE10_0677 seqA; regulatory protein for replication initiation
CE10_2871 hda; ATPase regulatory factor involved in DnaA inactivation
CE10_2605 gyrA; DNA gyrase subunit A
CE10_4344 gyrB; DNA gyrase, subunit B
CE10_3549 parC; DNA topoisomerase IV, subunit A
CE10_3560 parE; DNA topoisomerase IV, subunit B
CE10_1514 topA; DNA topoisomerase I, omega subunit
CE10_2043 topB; DNA topoisomerase III
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K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K02313 dnaA; chromosomal replication initiator protein
K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
K02315 dnaC; DNA replication protein DnaC
K02315 dnaC; DNA replication protein DnaC
K02316 dnaG; DNA primase [EC:2.7.7.101]
K03111 ssb; single-strand DNA-binding protein
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K10748 tus; DNA replication terminus site-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03645 seqA; negative modulator of initiation of replication
K10763 hda; DnaA-homolog protein
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
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03036 Chromosome and associated proteins [BR:eoc03036]
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03400 DNA repair and recombination proteins [BR:eoc03400]
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CE10_1580 ogt; O-6-alkylguanine-DNA:cysteine-protein methyltransferase
CE10_0690 phr; deoxyribodipyrimidine photolyase, FAD-binding protein
CE10_3015 ung; uracil-DNA-glycosylase
CE10_3409 mutY; adenine DNA glycosylase
CE10_1906 nth; DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
CE10_0101 mutT; nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP
CE10_4197 dut; deoxyuridinetriphosphatase
CE10_2587 ada; fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase
CE10_2586 alkB; oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions
CE10_3598 mug; G/U mismatch-specific DNA glycosylase, xanthine DNA glycosylase
CE10_2387 alkA; 3-methyl-adenine DNA glycosylase II
CE10_4101 tag; 3-methyl-adenine DNA glycosylase I, constitutive
CE10_4192 mutM; formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
CE10_0696 nei; endonuclease VIII/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
CE10_2029 xthA; exonuclease III
CE10_2531 nfo; endonuclease IV with intrinsic 3'-5' exonuclease activity
CE10_4678 nfi; endonuclease V
CE10_3331 recJ; ssDNA exonuclease, 5' --3'-specific
CE10_2794 ligA; DNA ligase, NAD(+)-dependent
CE10_4205 ligB; DNA ligase, NAD(+)-dependent
CE10_4523 polA; fused DNA polymerase I 5'-3' polymerase/3'-5' exonuclease/5'-3' exonuclease
CE10_4772 uvrA; ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC
CE10_0799 uvrB; excinulease of nucleotide excision repair, DNA damage recognition component
CE10_2198 uvrC; excinuclease UvrABC, endonuclease subunit
CE10_2020 cho; endonuclease of nucleotide excision repair
CE10_4461 uvrD; DNA-dependent ATPase I and helicase II
CE10_4662 rpoB; RNA polymerase, beta subunit
CE10_4663 rpoC; RNA polymerase, beta prime subunit
CE10_3830 rpoA; RNA polymerase, alpha subunit
CE10_4208 rpoZ; RNA polymerase, omega subunit
CE10_1195 mfd; transcription-repair coupling factor
CE10_3160 mutS; methyl-directed mismatch repair protein
CE10_4909 mutL; methyl-directed mismatch repair protein
CE10_3259 mutH; methyl-directed mismatch repair protein
CE10_2328 sbcB; exonuclease I
CE10_2936 xseA; exonuclease VII, large subunit
CE10_0389 xseB; exonuclease VII small subunit
CE10_2129 exoX; DNA exonuclease X
CE10_0186 dnaE; DNA polymerase III alpha subunit
CE10_4346 dnaN; DNA polymerase III, beta subunit
CE10_5004 holC; DNA polymerase III, chi subunit
CE10_0638 holA; DNA polymerase III, delta subunit
CE10_1179 holB; DNA polymerase III, delta prime subunit
CE10_0220 dnaQ; DNA polymerase III epsilon subunit
CE10_0442 dnaX; DNA polymerase III/DNA elongation factor III, tau and gamma subunits
CE10_5118 holD; DNA polymerase III, psi subunit
CE10_2127 holE; DNA polymerase III, theta subunit
CE10_4773 ssb; single-stranded DNA-binding protein
CE10_3904 dam; DNA adenine methyltransferase
CE10_2240 vsr; DNA mismatch endonuclease of very short patch repair
CE10_3247 recB; exonuclease V (RecBCD complex), beta subunit
CE10_3249 recC; exonuclease V (RecBCD complex), gamma chain
CE10_3246 recD; exonuclease V (RecBCD complex), alpha chain
CE10_3122 recA; DNA strand exchange and recombination protein with protease and nuclease activity
CE10_2147 ruvA; component of RuvABC resolvasome, regulatory subunit
CE10_2146 ruvB; ATP-dependent DNA helicase, component of RuvABC resolvasome
CE10_2149 ruvC; component of RuvABC resolvasome, endonuclease
CE10_0518 DLP12 prophage, endonuclease RUS
CE10_1040 Holliday-junction resolvase
CE10_1453 putative crossover junction endodeoxyribonuclease
CE10_5139 Crossover junction endodeoxyribonuclease
CE10_4605 priA; Primosome factor n' (replication factor Y)
CE10_0439 priC; primosomal replication protein N''
CE10_5106 dnaT; DNA biosynthesis protein (primosomal protein I)
CE10_2921 putative primosomal protein from phage
CE10_0359 sbcC; exonuclease, dsDNA, ATP-dependent
CE10_0360 sbcD; exonuclease, dsDNA, ATP-dependent
CE10_5194 radA; DNA repair protein
CE10_4345 recF; gap repair protein
CE10_4211 recG; ATP-dependent DNA helicase
CE10_2998 recO; gap repair protein
CE10_0444 recR; gap repair protein
CE10_3049 recN; recombination and repair protein
CE10_0356 rdgC; nucleoid-associated ssDNA and dsDNA binding protein, competitive inhibitor of RecA function
CE10_2558 yejH; putative ATP-dependent DNA or RNA helicase
CE10_5009 yjgR; conserved protein, DUF853 family with NTPase fold
CE10_2605 gyrA; DNA gyrase subunit A
CE10_4344 gyrB; DNA gyrase, subunit B
CE10_1514 topA; DNA topoisomerase I, omega subunit
CE10_4680 hupA; HU, DNA-binding transcriptional regulator, alpha subunit
CE10_0413 hupB; HU, DNA-binding transcriptional regulator, beta subunit
CE10_2928 recT; Rac prophage, recombination and repair protein
CE10_3797 fis; global DNA-binding transcriptional dual regulator
CE10_1992 ihfA; integration host factor (IHF), DNA-binding protein, alpha subunit
CE10_0940 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit
CE10_4472 recQ; ATP-dependent DNA helicase
CE10_3958 putative superfamily II DNA helicase
CE10_1414 hns; global DNA-binding transcriptional dual regulator H-NS
CE10_0234 dinB; DNA polymerase IV
CE10_1352 umuC; DNA polymerase V, subunit C
CE10_1351 umuD; DNA polymerase V, subunit D
CE10_4757 lexA; DNA-binding transcriptional repressor of SOS regulon
CE10_5138 putative LexA repressor
CE10_0061 polB; DNA polymerase II
CE10_4203 dinD; DNA-damage-inducible protein
CE10_1140 dinI; DNA damage-inducible protein I
CE10_5176 DNA damage-inducible protein in prophage (dinI-like)
CE10_3121 recX; regulatory protein for RecA
CE10_3931 yhgA; putative transposase
CE10_2690 yfcI; conserved protein
CE10_0133 yadD; putative transposase
CE10_5084 putative transposase
CE10_2623 yfaD; conserved protein
CE10_4421 rep; ATP-dependent DNA helicase Rep
CE10_0990 helD; DNA helicase IV
CE10_2090 yoaA; conserved protein with nucleoside triphosphate hydrolase domain
CE10_0820 dinG; ATP-dependent DNA helicase
CE10_1925 lhr; putative ATP-dependent helicase
CE10_3096 nrdE; ribonucleoside-diphosphate reductase 2, alpha subunit
CE10_2611 nrdA; ribonucleoside-diphosphate reductase 1, alpha subunit
CE10_2612 nrdB; ribonucleoside-diphosphate reductase 1, beta subunit, ferritin-like protein
CE10_3097 nrdF; ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K05984 cho; excinuclease Cho [EC:3.1.25.-]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04067 priC; primosomal replication protein N''
K02317 dnaT; DNA replication protein DnaT
K02317 dnaT; DNA replication protein DnaT
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K19789 radD; DNA repair protein RadD
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K07455 recT; recombination protein RecT
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K14623 dinD; DNA-damage-inducible protein D
K12149 dinI; DNA-damage-inducible protein I
K12149 dinI; DNA-damage-inducible protein I
K03565 recX; regulatory protein
K01157 rpnA; recombination-promoting nuclease RpnA [EC:3.1.21.-]
K24087 rpnB; recombination-promoting nuclease RpnB [EC:3.1.21.-]
K24088 rpnC; recombination-promoting nuclease RpnC [EC:3.1.21.-]
K24089 rpnD; recombination-promoting nuclease RpnD [EC:3.1.21.-]
K24090 rpnE; recombination-promoting nuclease RpnE
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03658 helD; DNA helicase IV [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:eoc03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Escherichia coli O7:K1 CE10