09100 Metabolism
09120 Genetic Information Processing
09121 Transcription
09122 Translation
09123 Folding, sorting and degradation
09124 Replication and repair
03030 DNA replication [PATH:hip03030]
03410 Base excision repair [PATH:hip03410]
03420 Nucleotide excision repair [PATH:hip03420]
03430 Mismatch repair [PATH:hip03430]
03440 Homologous recombination [PATH:hip03440]
CGSHiEE_05965 single-stranded-DNA-specific exonuclease RecJ CGSHiEE_01815 single-strand DNA-binding protein CGSHiEE_07010 recombination protein F CGSHiEE_01370 DNA repair protein RecO CGSHiEE_00775 recombination protein RecR CGSHiEE_09155 recA; recombinase A CGSHiEE_07760 DNA polymerase I CGSHiEE_01490 ruvA; Holliday junction DNA helicase motor protein CGSHiEE_01495 Holliday junction DNA helicase RuvB CGSHiEE_01485 ruvC; Holliday junction resolvase CGSHiEE_03335 rpoZ; DNA-directed RNA polymerase subunit omega CGSHiEE_02760 predicted transcriptional regulator containing an HTH domain CGSHiEE_05005 hypothetical protein CGSHiEE_07255 exodeoxyribonuclease V gamma chain CGSHiEE_05000 exodeoxyribonuclease V alpha chain CGSHiEE_07005 DNA polymerase III subunit beta CGSHiEE_03880 DNA polymerase III subunits gamma and tau CGSHiEE_07400 DNA polymerase III subunit delta CGSHiEE_00715 DNA polymerase III subunit delta CGSHiEE_02600 DNA polymerase III subunit epsilon CGSHiEE_04555 DNA polymerase III subunit chi CGSHiEE_03260 DNA polymerase III subunit psi CGSHiEE_01305 primosome assembly protein PriA CGSHiEE_00260 primosomal replication protein N CGSHiEE_01395 predicted primosomal replication protein N
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K03111 ssb; single-strand DNA-binding protein K03629 recF; DNA replication and repair protein RecF K03584 recO; DNA repair protein RecO (recombination protein O) K06187 recR; recombination protein RecR K03553 recA; recombination protein RecA K02335 polA; DNA polymerase I [EC:2.7.7.7] K03550 ruvA; holliday junction DNA helicase RuvA K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] K02686 priB; primosomal replication protein N K04067 priC; primosomal replication protein N''
03450 Non-homologous end-joining
03460 Fanconi anemia pathway
09126 Chromosome
09125 Information processing in viruses
09130 Environmental Information Processing
09140 Cellular Processes
09150 Organismal Systems
09160 Human Diseases
09180 Brite Hierarchies
09181 Protein families: metabolism
09182 Protein families: genetic information processing
03000 Transcription factors [BR:hip03000]
03021 Transcription machinery [BR:hip03021]
03019 Messenger RNA biogenesis [BR:hip03019]
03041 Spliceosome
03011 Ribosome [BR:hip03011]
03009 Ribosome biogenesis [BR:hip03009]
03016 Transfer RNA biogenesis [BR:hip03016]
03012 Translation factors [BR:hip03012]
03110 Chaperones and folding catalysts [BR:hip03110]
04131 Membrane trafficking [BR:hip04131]
04121 Ubiquitin system [BR:hip04121]
03051 Proteasome [BR:hip03051]
03032 DNA replication proteins [BR:hip03032]
03036 Chromosome and associated proteins [BR:hip03036]
03400 DNA repair and recombination proteins [BR:hip03400]
CGSHiEE_00985 methylated-DNA-protein-cysteine methyltransferase CGSHiEE_03220 uracil-DNA glycosylase CGSHiEE_08300 hypothetical protein CGSHiEE_03590 modC; molybdate transporter ATP-binding subunit CGSHiEE_07190 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase CGSHiEE_08930 DNA-3-methyladenine glycosylase CGSHiEE_07235 formamidopyrimidine-DNA glycosylase CGSHiEE_03095 exodeoxyribonuclease III CGSHiEE_05965 single-stranded-DNA-specific exonuclease RecJ CGSHiEE_06560 DNA ligase CGSHiEE_07760 DNA polymerase I CGSHiEE_03020 excinuclease ABC subunit C CGSHiEE_06105 DNA helicase II CGSHiEE_00425 rpoB; DNA-directed RNA polymerase subunit beta CGSHiEE_00430 DNA-directed RNA polymerase subunit beta' CGSHiEE_08050 DNA-directed RNA polymerase subunit alpha CGSHiEE_03325 DNA-directed RNA polymerase omega subunit CGSHiEE_04040 transcription-repair coupling factor CGSHiEE_08610 DNA mismatch repair protein CGSHiEE_02960 DNA mismatch repair protein CGSHiEE_00980 DNA mismatch repair protein CGSHiEE_04440 exodeoxyribonuclease I CGSHiEE_01010 exodeoxyribonuclease VII large subunit CGSHiEE_04785 exodeoxyribonuclease VII small subunit CGSHiEE_07005 DNA polymerase III subunit beta CGSHiEE_04555 DNA polymerase III subunit chi CGSHiEE_07400 DNA polymerase III subunit delta CGSHiEE_00715 DNA polymerase III subunit delta CGSHiEE_02600 DNA polymerase III subunit epsilon CGSHiEE_03880 DNA polymerase III subunits gamma and tau CGSHiEE_03260 DNA polymerase III subunit psi CGSHiEE_01815 single-strand DNA-binding protein CGSHiEE_05005 hypothetical protein CGSHiEE_07255 exodeoxyribonuclease V gamma chain CGSHiEE_05000 exodeoxyribonuclease V alpha chain CGSHiEE_09155 recA; recombinase A CGSHiEE_01490 ruvA; Holliday junction DNA helicase motor protein CGSHiEE_01495 Holliday junction DNA helicase RuvB CGSHiEE_01485 ruvC; Holliday junction resolvase CGSHiEE_01305 primosome assembly protein PriA CGSHiEE_00260 primosomal replication protein N CGSHiEE_01395 predicted primosomal replication protein N CGSHiEE_05590 hypothetical protein CGSHiEE_07010 recombination protein F CGSHiEE_03335 rpoZ; DNA-directed RNA polymerase subunit omega CGSHiEE_02760 predicted transcriptional regulator containing an HTH domain CGSHiEE_01370 DNA repair protein RecO CGSHiEE_00775 recombination protein RecR CGSHiEE_02940 DNA repair protein CGSHiEE_01520 rdgC; recombination associated protein CGSHiEE_04075 DNA gyrase subunit A CGSHiEE_00130 gyrB; DNA gyrase subunit B CGSHiEE_04360 DNA topoisomerase I CGSHiEE_00840 nudC; NADH pyrophosphatase CGSHiEE_07065 DNA-binding protein Fis CGSHiEE_05110 rpmI; 50S ribosomal protein L35 CGSHiEE_03840 integration host factor beta-subunit CGSHiEE_08475 prolyl-tRNA synthetase CGSHiEE_05540 acetolactate synthase 3 catalytic subunit CGSHiEE_08360 LexA repressor CGSHiEE_09160 RecA regulator RecX CGSHiEE_08955 ATP-dependent DNA helicase CGSHiEE_01065 probable ATP-dependent helicase CGSHiEE_03760 ribonucleotide-diphosphate reductase subunit alpha CGSHiEE_03750 nrdB; ribonucleotide-diphosphate reductase subunit beta
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] K01520 dut; dUTP diphosphatase [EC:3.6.1.23] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K02335 polA; DNA polymerase I [EC:2.7.7.7] K03703 uvrC; excinuclease ABC subunit C K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] K03555 mutS; DNA mismatch repair protein MutS K03572 mutL; DNA mismatch repair protein MutL K03573 mutH; DNA mismatch repair protein MutH K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] K03111 ssb; single-strand DNA-binding protein K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] K03553 recA; recombination protein RecA K03550 ruvA; holliday junction DNA helicase RuvA K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] K02686 priB; primosomal replication protein N K04067 priC; primosomal replication protein N'' K04485 radA; DNA repair protein RadA/Sms K03629 recF; DNA replication and repair protein RecF K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03584 recO; DNA repair protein RecO (recombination protein O) K06187 recR; recombination protein RecR K03631 recN; DNA repair protein RecN (Recombination protein N) K03554 rdgC; recombination associated protein RdgC K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K05787 hupA; DNA-binding protein HU-alpha K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein K04764 ihfA; integration host factor subunit alpha K05788 ihfB; integration host factor subunit beta K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] K03746 hns; DNA-binding protein H-NS K01356 lexA; repressor LexA [EC:3.4.21.88] K03565 recX; regulatory protein K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
03029 Mitochondrial biogenesis [BR:hip03029]
09183 Protein families: signaling and cellular processes
09185 Viral protein families
09184 RNA family
09190 Not Included in Pathway or Brite
KEGG Orthology (KO) - Haemophilus influenzae PittEE (nontypeable) KEGG Orthology (KO) - Haemophilus influenzae PittEE (nontypeable)