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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:hna03030]
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03410 Base excision repair [PATH:hna03410]
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03420 Nucleotide excision repair [PATH:hna03420]
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03430 Mismatch repair [PATH:hna03430]
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03440 Homologous recombination [PATH:hna03440]
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 Hneap_0403 single-stranded-DNA-specific exonuclease RecJ
Hneap_0025 single-strand binding protein
Hneap_1650 single-strand binding protein
Hneap_0003 DNA replication and repair protein RecF
Hneap_1386 DNA repair protein RecO
Hneap_0771 recombination protein RecR
Hneap_0354 RecA protein
Hneap_1688 DNA polymerase I
Hneap_0530 Holliday junction DNA helicase RuvA
Hneap_0531 Holliday junction DNA helicase RuvB
Hneap_0529 crossover junction endodeoxyribonuclease RuvC
Hneap_0124 ATP-dependent DNA helicase RecG
Hneap_0615 putative transcriptional regulator
Hneap_1981 exodeoxyribonuclease V, beta subunit
Hneap_0563 exodeoxyribonuclease V, gamma subunit
Hneap_1980 exodeoxyribonuclease V, alpha subunit
Hneap_0583 DNA polymerase III, alpha subunit
Hneap_0002 DNA polymerase III, beta subunit
Hneap_0769 DNA polymerase III, subunits gamma and tau
Hneap_1742 DNA polymerase III, delta subunit
Hneap_1917 DNA-directed DNA polymerase
Hneap_1410 DNA polymerase III, epsilon subunit
Hneap_1827 DNA polymerase III, epsilon subunit
Hneap_1378 DNA polymerase III chi subunit HolC
Hneap_0799 primosomal protein N'
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:hna03000]
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03021 Transcription machinery [BR:hna03021]
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03019 Messenger RNA biogenesis [BR:hna03019]
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03041 Spliceosome
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03011 Ribosome [BR:hna03011]
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03009 Ribosome biogenesis [BR:hna03009]
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03016 Transfer RNA biogenesis [BR:hna03016]
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03012 Translation factors [BR:hna03012]
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03110 Chaperones and folding catalysts [BR:hna03110]
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04131 Membrane trafficking [BR:hna04131]
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04121 Ubiquitin system [BR:hna04121]
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03051 Proteasome [BR:hna03051]
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03032 DNA replication proteins [BR:hna03032]
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03036 Chromosome and associated proteins [BR:hna03036]
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03400 DNA repair and recombination proteins [BR:hna03400]
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Hneap_1928 methylated-DNA/protein-cysteine methyltransferase
Hneap_0814 Deoxyribodipyrimidine photo-lyase
Hneap_1306 Deoxyribodipyrimidine photo-lyase
Hneap_2154 uracil-DNA glycosylase
Hneap_1851 A/G-specific adenine glycosylase
Hneap_1074 endonuclease III
Hneap_1996 NUDIX hydrolase
Hneap_0178 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
Hneap_1235 deoxyribodipyrimidine photolyase-related protein
Hneap_1417 DNA-3-methyladenine glycosylase I
Hneap_2023 formamidopyrimidine-DNA glycosylase
Hneap_0007 exodeoxyribonuclease III Xth
Hneap_0039 exodeoxyribonuclease III Xth
Hneap_0403 single-stranded-DNA-specific exonuclease RecJ
Hneap_0163 DNA ligase, NAD-dependent
Hneap_1688 DNA polymerase I
Hneap_0024 excinuclease ABC, A subunit
Hneap_0350 excinuclease ABC, B subunit
Hneap_1803 excinuclease ABC, C subunit
Hneap_1120 UvrD/REP helicase
Hneap_0316 DNA-directed RNA polymerase, beta subunit
Hneap_0317 DNA-directed RNA polymerase, beta' subunit
Hneap_0347 DNA-directed RNA polymerase, alpha subunit
Hneap_0034 DNA-directed RNA polymerase, omega subunit
Hneap_1978 transcription-repair coupling factor
Hneap_0653 DNA mismatch repair protein MutS
Hneap_2015 DNA mismatch repair protein MutL
Hneap_1071 Exodeoxyribonuclease I
Hneap_0428 exodeoxyribonuclease VII, large subunit
Hneap_1677 exodeoxyribonuclease VII, small subunit
Hneap_0583 DNA polymerase III, alpha subunit
Hneap_0002 DNA polymerase III, beta subunit
Hneap_1378 DNA polymerase III chi subunit HolC
Hneap_1742 DNA polymerase III, delta subunit
Hneap_1917 DNA-directed DNA polymerase
Hneap_1410 DNA polymerase III, epsilon subunit
Hneap_1827 DNA polymerase III, epsilon subunit
Hneap_0769 DNA polymerase III, subunits gamma and tau
Hneap_0025 single-strand binding protein
Hneap_1650 single-strand binding protein
Hneap_1631 D12 class N6 adenine-specific DNA methyltransferase
Hneap_0202 DNA adenine methylase
Hneap_1981 exodeoxyribonuclease V, beta subunit
Hneap_0563 exodeoxyribonuclease V, gamma subunit
Hneap_1980 exodeoxyribonuclease V, alpha subunit
Hneap_0354 RecA protein
Hneap_0530 Holliday junction DNA helicase RuvA
Hneap_0531 Holliday junction DNA helicase RuvB
Hneap_0529 crossover junction endodeoxyribonuclease RuvC
Hneap_0799 primosomal protein N'
Hneap_1778 DNA repair protein RadA
Hneap_0003 DNA replication and repair protein RecF
Hneap_0124 ATP-dependent DNA helicase RecG
Hneap_0615 putative transcriptional regulator
Hneap_1386 DNA repair protein RecO
Hneap_0771 recombination protein RecR
Hneap_1475 DNA repair protein RecN
Hneap_1033 putative exonuclease RdgC
Hneap_0819 CRISPR-associated protein Cas1
Hneap_1551 protein of unknown function DUF853 NPT hydrolase putative
Hneap_1339 DNA gyrase, A subunit
Hneap_0004 DNA gyrase, B subunit
Hneap_2090 DNA topoisomerase I
Hneap_0390 histone family protein DNA-binding protein
Hneap_1692 transcriptional regulator, Fis family
Hneap_1314 integration host factor, alpha subunit
Hneap_1329 integration host factor, beta subunit
Hneap_0299 ATP-dependent DNA helicase RecQ
Hneap_0439 histone family protein nucleoid-structuring protein H-NS
Hneap_0886 DNA-directed DNA polymerase
Hneap_0885 Peptidase S24/S26A/S26B, conserved region
Hneap_0355 regulatory protein RecX
Hneap_1537 UvrD/REP helicase
Hneap_0648 helicase c2
Hneap_1010 ribonucleoside-diphosphate reductase, alpha subunit
Hneap_1009 Ribonucleoside-diphosphate reductase
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K15342 cas1; CRISP-associated protein Cas1
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:hna03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Halothiobacillus neapolitanus