09100 Metabolism
09120 Genetic Information Processing
09121 Transcription
09122 Translation
09123 Folding, sorting and degradation
09124 Replication and repair
03030 DNA replication [PATH:hpya03030]
03410 Base excision repair [PATH:hpya03410]
03420 Nucleotide excision repair [PATH:hpya03420]
03430 Mismatch repair [PATH:hpya03430]
03440 Homologous recombination [PATH:hpya03440]
HPAKL117_01685 single-stranded-DNA-specific exonuclease HPAKL117_05905 single-stranded DNA-binding protein HPAKL117_04420 recR; recombination protein RecR HPAKL117_00765 recA; recombinase A HPAKL117_04235 ruvA; Holliday junction DNA helicase RuvA HPAKL117_01890 ruvB; Holliday junction DNA helicase RuvB HPAKL117_04200 ruvC; Holliday junction resolvase HPAKL117_07315 ATP-dependent DNA helicase RecG HPAKL117_07000 dnaE; DNA polymerase III subunit alpha HPAKL117_02505 DNA polymerase III subunit beta HPAKL117_03385 DNA polymerase III subunits gamma and tau HPAKL117_05915 DNA polymerase III subunit delta HPAKL117_05830 DNA polymerase III subunit delta' HPAKL117_07485 DNA polymerase III subunit epsilon HPAKL117_04985 primosome assembly protein PriA
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K03111 ssb; single-strand DNA-binding protein K06187 recR; recombination protein RecR K03553 recA; recombination protein RecA K03550 ruvA; holliday junction DNA helicase RuvA K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
03450 Non-homologous end-joining
03460 Fanconi anemia pathway
09126 Chromosome
09125 Information processing in viruses
09130 Environmental Information Processing
09140 Cellular Processes
09150 Organismal Systems
09160 Human Diseases
09180 Brite Hierarchies
09181 Protein families: metabolism
09182 Protein families: genetic information processing
03000 Transcription factors [BR:hpya03000]
03021 Transcription machinery [BR:hpya03021]
03019 Messenger RNA biogenesis [BR:hpya03019]
03041 Spliceosome
03011 Ribosome [BR:hpya03011]
03009 Ribosome biogenesis [BR:hpya03009]
03016 Transfer RNA biogenesis [BR:hpya03016]
03012 Translation factors [BR:hpya03012]
03110 Chaperones and folding catalysts [BR:hpya03110]
04131 Membrane trafficking [BR:hpya04131]
04121 Ubiquitin system
03051 Proteasome [BR:hpya03051]
03032 DNA replication proteins [BR:hpya03032]
03036 Chromosome and associated proteins [BR:hpya03036]
03400 DNA repair and recombination proteins [BR:hpya03400]
HPAKL117_03200 methylated-DNA--protein-cysteine methyltransferase HPAKL117_06410 uracil-DNA glycosylase HPAKL117_00705 DNA glycosylase MutY HPAKL117_02765 endonuclease III HPAKL117_04140 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase HPAKL117_03080 hypothetical protein HPAKL117_07330 exodeoxyribonuclease III HPAKL117_01685 single-stranded-DNA-specific exonuclease HPAKL117_02900 ligA; NAD-dependent DNA ligase LigA HPAKL117_03335 uvrA; excinuclease ABC subunit A HPAKL117_05220 excinuclease ABC subunit B HPAKL117_03935 uvrC; excinuclease ABC subunit C HPAKL117_04355 rep helicase, single-stranded DNA-dependent ATPase HPAKL117_07100 DNA helicase II HPAKL117_05665 bifunctional DNA-directed RNA polymerase subunit beta/beta' HPAKL117_06140 DNA-directed RNA polymerase subunit alpha HPAKL117_03700 rpoZ; DNA-directed RNA polymerase subunit omega HPAKL117_07625 transcription-repair coupling factor HPAKL117_02935 recombination and DNA strand exchange inhibitor protein HPAKL117_01300 xseA; exodeoxyribonuclease VII large subunit HPAKL117_07120 exodeoxyribonuclease VII small subunit HPAKL117_07000 dnaE; DNA polymerase III subunit alpha HPAKL117_02505 DNA polymerase III subunit beta HPAKL117_05915 DNA polymerase III subunit delta HPAKL117_05830 DNA polymerase III subunit delta' HPAKL117_07485 DNA polymerase III subunit epsilon HPAKL117_03385 DNA polymerase III subunits gamma and tau HPAKL117_05905 single-stranded DNA-binding protein HPAKL117_02410 type II adenine specific DNA methyltransferase HPAKL117_07210 DNA adenine methylase HPAKL117_00765 recA; recombinase A HPAKL117_04235 ruvA; Holliday junction DNA helicase RuvA HPAKL117_01890 ruvB; Holliday junction DNA helicase RuvB HPAKL117_04200 ruvC; Holliday junction resolvase HPAKL117_04985 primosome assembly protein PriA HPAKL117_01125 DNA repair protein RadA HPAKL117_07315 ATP-dependent DNA helicase RecG HPAKL117_04420 recR; recombination protein RecR HPAKL117_07430 DNA repair protein (recN) HPAKL117_03315 DNA gyrase subunit A HPAKL117_02510 gyrB; DNA gyrase subunit B HPAKL117_02230 topoisomerase I HPAKL117_00570 DNA topoisomerase I HPAKL117_06700 topoisomerase I HPAKL117_04005 DNA-binding protein HU HPAKL117_03215 ribonucleotide-diphosphate reductase subunit alpha HPAKL117_05095 nrdF; ribonucleotide-diphosphate reductase subunit beta
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] K01520 dut; dUTP diphosphatase [EC:3.6.1.23] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K03701 uvrA; excinuclease ABC subunit A K03702 uvrB; excinuclease ABC subunit B K03703 uvrC; excinuclease ABC subunit C K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K13797 rpoBC; DNA-directed RNA polymerase subunit beta-beta' [EC:2.7.7.6] K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] K07456 mutS2; DNA mismatch repair protein MutS2 K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K03111 ssb; single-strand DNA-binding protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] K06223 dam; DNA adenine methylase [EC:2.1.1.72] K03553 recA; recombination protein RecA K03550 ruvA; holliday junction DNA helicase RuvA K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] K04485 radA; DNA repair protein RadA/Sms K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K06187 recR; recombination protein RecR K03631 recN; DNA repair protein RecN (Recombination protein N) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03530 hupB; DNA-binding protein HU-beta K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
03029 Mitochondrial biogenesis [BR:hpya03029]
09183 Protein families: signaling and cellular processes
09185 Viral protein families
09184 RNA family
09190 Not Included in Pathway or Brite
KEGG Orthology (KO) - Helicobacter pylori Aklavik117 KEGG Orthology (KO) - Helicobacter pylori Aklavik117