Isop_2353 single-stranded-DNA-specific exonuclease RecJ
       Isop_2890 single-strand binding protein
       Isop_3564 DNA repair protein RecO
       Isop_2994 DNA replication and repair protein RecR
       Isop_1963 RecA protein
       Isop_0637 holliday junction DNA helicase RuvA
       Isop_0636 Holliday junction DNA helicase subunit RuvB
       Isop_3683 Crossover junction endodeoxyribonuclease
       Isop_1325 DNA polymerase III, alpha subunit
       Isop_2145 DNA polymerase III, beta subunit
       Isop_2992 DNA polymerase III, subunits gamma and tau
       Isop_1265 DNA polymerase III, delta subunit
       Isop_0907 DNA polymerase III, delta prime subunit
       Isop_2695 primosomal protein N'

K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]

       Isop_2697 methylated-DNA/protein-cysteinemethyltransferase
       Isop_3295 DNA photolyase FAD-binding protein
       Isop_1136 DNA photolyase FAD-binding protein
       Isop_0724 DNA photolyase FAD-binding protein
       Isop_2169 Uracil-DNA glycosylase
       Isop_1640 HhH-GPD family protein
       Isop_3101 endonuclease III; DNA-(apurinic or apyrimidinic site) lyase
       Isop_1830 type III restriction protein res subunit
       Isop_0656 NUDIX hydrolase
       Isop_2370 NUDIX hydrolase
       Isop_0005 NUDIX hydrolase
       Isop_1137 deoxyribodipyrimidine photolyase-related protein
       Isop_1271 phage SPO1 DNA polymerase-related protein
       Isop_0740 HhH-GPD family protein
       Isop_1352 formamidopyrimidine-DNA glycosylase
       Isop_3485 apurinic endonuclease Apn1
       Isop_1977 Deoxyribonuclease V
       Isop_2353 single-stranded-DNA-specific exonuclease RecJ
       Isop_1161 DNA ligase, NAD-dependent
       Isop_3325 UvrA family protein
       Isop_1038 excinuclease ABC, A subunit
       Isop_0628 ABC transporter related protein
       Isop_2783 Excinuclease ABC subunit B
       Isop_1928 excinuclease ABC C subunit domain protein
       Isop_2011 UvrD/REP helicase
       Isop_2865 UvrD/REP helicase
       Isop_0105 DNA-directed RNA polymerase subunit beta
       Isop_3471 DNA-directed RNA polymerase subunit beta'
       Isop_1658 RNA polymerase alpha subunit domain protein
       Isop_2104 DNA-directed RNA polymerase subunit alpha
       Isop_0200 hypothetical protein
       Isop_1066 transcription-repair coupling factor
       Isop_0373 DNA mismatch repair protein MutS
       Isop_3309 DNA mismatch repair protein MutS domain protein
       Isop_1688 DNA mismatch repair protein MutL
       Isop_0187 exodeoxyribonuclease VII, large subunit
       Isop_1786 exodeoxyribonuclease VII, small subunit
       Isop_1325 DNA polymerase III, alpha subunit
       Isop_2145 DNA polymerase III, beta subunit
       Isop_1265 DNA polymerase III, delta subunit
       Isop_0907 DNA polymerase III, delta prime subunit
       Isop_2992 DNA polymerase III, subunits gamma and tau
       Isop_2890 single-strand binding protein
       Isop_3557 D12 class N6 adenine-specific DNA methyltransferase
       Isop_1963 RecA protein
       Isop_0637 holliday junction DNA helicase RuvA
       Isop_0636 Holliday junction DNA helicase subunit RuvB
       Isop_3683 Crossover junction endodeoxyribonuclease
       Isop_2442 endodeoxyribonuclease RusA
       Isop_2695 primosomal protein N'
       Isop_3564 DNA repair protein RecO
       Isop_2994 DNA replication and repair protein RecR
       Isop_2126 DNA repair protein RecN
       Isop_3464 hypothetical protein
       Isop_0510 CRISPR-associated protein Cas1
       Isop_2443 type III restriction protein res subunit
       Isop_3274 DNA topoisomerase (ATP-hydrolyzing)
       Isop_1248 DNA gyrase subunit A
       Isop_1650 DNA topoisomerase type IIA subunit B region 2 domain protein
       Isop_3275 DNA topoisomerase IV subunit B
       Isop_1091 DNA topoisomerase I
       Isop_3293 ATP-dependent DNA helicase, RecQ family
       Isop_3554 SOS-response transcriptional repressor, LexA
       Isop_1410 PHP domain protein
       Isop_1478 helicase c2
       Isop_0698 DEAD/DEAH box helicase domain protein
       Isop_2841 DEAD/H associated domain protein
       Isop_0097 NUDIX hydrolase
       Isop_1592 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
       Isop_3051 phosphoesterase RecJ domain protein

K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03048 rpoE; DNA-directed RNA polymerase subunit delta
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K15342 cas1; CRISP-associated protein Cas1
K19789 radD; DNA repair protein RadD
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02347 polX; DNA polymerase (family X)
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]