 Eukaryotic type
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 Basic leucine zipper (bZIP)
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Basic helix-loop-helix (bHLH)
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Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
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Other basic domains
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Zinc finger
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Helix-turn-helix
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Homeo domain ANTP: HOXL
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Homeo domain ANTP: NKL
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Homeo domain Paired-related
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Homeo domain LIM
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Homeo domain POU
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Homeo domain SINE
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Homeo domain ZF
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 K09379 ZFHX2; zinc finger homeobox protein 2
K09378 ZFHX3, ATBF1; zinc finger homeobox protein 3
K09380 ZFHX4; zinc finger homeobox protein 4
K09299 ZEB1; zinc finger homeobox protein 1
K23560 ZEB2; zinc finger homeobox protein 2
K22591 ADNP; activity-dependent neuroprotector homeobox protein
K24878 ADNP2; activity-dependent neuroprotector homeobox protein 2
K24879 ZHX1; zinc fingers and homeoboxes protein 1
K24880 ZHX2; zinc fingers and homeoboxes protein 2
K24881 ZHX3; zinc fingers and homeoboxes protein 3
K24883 HOMEZ; homeobox and leucine zipper protein Homez
K24882 NANOGNB; NANOG neighbor homeobox
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Homeo domain CUT
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Homeo domain PROS
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Homeo domain TALE
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Homeo domain other
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Fork head/winged helix developmental regulators
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Fork head/winged helix tissue-specific regulators
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Fork head/winged helix cell cycle-controlling factors, E2F
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Fork head/winged helix cell cycle-controlling factors, DP
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Fork head/winged helix other regulators
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Heat shock factors
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Tryptophan clusters Myb, Myb-factors
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Tryptophan clusters Myb, Myb-like factors
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Tryptophan clusters Ets-type
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Tryptophan clusters interferon-regulating factors
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TEA domain
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ARID
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beta-Scaffold factors with minor groove contacts
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Other transcription factors
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Prokaryotic type
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Transcription Factors