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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:lli03030]
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03410 Base excision repair [PATH:lli03410]
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03420 Nucleotide excision repair [PATH:lli03420]
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03430 Mismatch repair [PATH:lli03430]
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03440 Homologous recombination [PATH:lli03440]
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 uc509_0640 recJ; single strand DNA-specific exonuclease
uc509_0415 ssbA; single-stranded DNA-binding protein
uc509_2169 ssbA; single-stranded DNA-binding protein
uc509_1941 recF; DNA replication and repair protein RecF
uc509_0030 recO; DNA repair protein RecO
uc509_0358 recR; recombination protein RecR
uc509_0374 recA; DNA-dependent recombination protein RecA, ATPase, AAA family
uc509_2122 polA; DNA polymerase I
uc509_2183 ruvA; Holliday junction DNA helicase RuvA
uc509_2182 ruvB; Holliday junction DNA helicase RuvB
uc509_2219 recG; ATP-dependent DNA helicase RecG
uc509_1687 recD; exodeoxyribonuclease V alpha chain
uc509_0517 dnaE; DNA polymerase III, alpha subunit
uc509_2105 polC; DNA polymerase III, alpha subunit
uc509_0002 dnaN; DNA polymerase III subunit beta
uc509_2173 dnaX; DNA polymerase III subunits gamma and tau
uc509_1605 holA; DNA polymerase III subunit delta
uc509_0423 holB; DNA polymerase III, delta prime subunit
uc509_1035 dnaQ; DNA polymerase III, epsilon chain
uc509_1871 priA; primosome assembly protein PriA
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:lli03000]
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03021 Transcription machinery [BR:lli03021]
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03019 Messenger RNA biogenesis [BR:lli03019]
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03041 Spliceosome
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03011 Ribosome [BR:lli03011]
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03009 Ribosome biogenesis [BR:lli03009]
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03016 Transfer RNA biogenesis [BR:lli03016]
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03012 Translation factors [BR:lli03012]
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03110 Chaperones and folding catalysts [BR:lli03110]
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04131 Membrane trafficking [BR:lli04131]
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04121 Ubiquitin system
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03051 Proteasome
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03032 DNA replication proteins [BR:lli03032]
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03036 Chromosome and associated proteins [BR:lli03036]
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03400 DNA repair and recombination proteins [BR:lli03400]
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uc509_0525 ogt; 6-O-methylguanine-DNA methyltransferase
uc509_0236 ung; uracil-DNA glycosylase
uc509_0861 mutY; A/G-specific adenine glycosylase
uc509_1072 nth; Endonuclease III
uc509_2203 mutT; Hydrolase, MutT/nudix family
uc509_0173 dut; deoxyuridine 5-triphosphate nucleotidohydrolase
uc509_1854 dut; deoxyuridine 5-triphosphate nucleotidohydrolase
uc509_0526 adaA; methylphosphotriester-DNA alkyltransferase
uc509_1124 DNA-3-methyladenine glycosylase I
uc509_0373 fpg; formamidopyrimidine-DNA glycosylase
uc509_0804 exoA; Exodeoxyribonuclease III
uc509_0640 recJ; single strand DNA-specific exonuclease
uc509_0451 ligA; NAD-dependent DNA ligase
uc509_2122 polA; DNA polymerase I
uc509_1777 uvrA; Excinuclease ABC, subunit A
uc509_0567 uvrB; excinuclease ABC subunit B
uc509_0860 uvrC; excinuclease ABC subunit C
uc509_1122 pcrA; ATP-dependent DNA helicase
uc509_1753 rpoB; DNA-directed RNA polymerase, beta chain
uc509_1752 rpoC; DNA-directed RNA polymerase, beta prime chain
uc509_2053 rpoA; DNA-directed RNA polymerase, alpha chain
uc509_0642 rpoE; DNA-directed RNA polymerase subunit delta
uc509_1872 rpoZ; DNA-directed RNA polymerase subunit omega
uc509_0011 mfd; Transcription-repair coupling factor
uc509_2186 mutS; DNA mismatch repair protein MutS
uc509_1596 mutS; DNA mismatch repair protein mutS
uc509_2184 mutL; DNA mismatch repair protein MutL
uc509_0885 xseA; exodeoxyribonuclease VII large subunit
uc509_0886 xseB; exodeoxyribonuclease VII small subunit
uc509_0517 dnaE; DNA polymerase III, alpha subunit
uc509_2105 polC; DNA polymerase III, alpha subunit
uc509_0002 dnaN; DNA polymerase III subunit beta
uc509_1605 holA; DNA polymerase III subunit delta
uc509_0423 holB; DNA polymerase III, delta prime subunit
uc509_1035 dnaQ; DNA polymerase III, epsilon chain
uc509_2173 dnaX; DNA polymerase III subunits gamma and tau
uc509_0415 ssbA; single-stranded DNA-binding protein
uc509_2169 ssbA; single-stranded DNA-binding protein
uc509_1687 recD; exodeoxyribonuclease V alpha chain
uc509_0374 recA; DNA-dependent recombination protein RecA, ATPase, AAA family
uc509_2183 ruvA; Holliday junction DNA helicase RuvA
uc509_2182 ruvB; Holliday junction DNA helicase RuvB
uc509_1871 priA; primosome assembly protein PriA
uc509_1332 sbcC; Exonuclease, subunit C
uc509_1333 sbcD; Exonuclease, subunit D
uc509_2042 radA; DNA repair protein RadA
uc509_1941 recF; DNA replication and repair protein RecF
uc509_2219 recG; ATP-dependent DNA helicase RecG
uc509_0030 recO; DNA repair protein RecO
uc509_0358 recR; recombination protein RecR
uc509_0893 recN; DNA repair protein recN
uc509_0543 recU; Recombination protein RecU
uc509_0004 rexA; ATP-dependent nuclease subunit A
uc509_0003 rexB; ATP-dependent nuclease subunit B
uc509_1116 gyrA; DNA gyrase subunit A
uc509_0947 gyrB; DNA gyrase subunit B
uc509_1247 topA; DNA topoisomerase I
uc509_0523 hllA; DNA-binding protein HU, histone-like protein
uc509_0917 hllA; HU-like DNA-binding protein
uc509_1762 recQ; ATP-dependent DNA helicase RecQ
uc509_2002 dinP; DNA polymerase IV
uc509_p7005 UmuC
uc509_p7025 UmuC protein
uc509_2161 recX; recombination regulator RecX
uc509_1790 dinG; ATP-dependent helicase dinG-like protein
uc509_1028 nrdE; ribonucleotide-diphosphate reductase subunit alpha
uc509_1027 nrdF; ribonucleotide-diphosphate reductase subunit beta
uc509_0741 Phosphoesterase, DHH family
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03048 rpoE; DNA-directed RNA polymerase subunit delta
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03700 recU; recombination protein U
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03502 umuC; DNA polymerase V
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:lli03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Lactococcus lactis subsp. cremoris UC509.9