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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:lmf03030]
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03410 Base excision repair [PATH:lmf03410]
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03420 Nucleotide excision repair [PATH:lmf03420]
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03430 Mismatch repair [PATH:lmf03430]
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03440 Homologous recombination [PATH:lmf03440]
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 LMOf2365_1544 recJ; single-stranded-DNA-specific exonuclease RecJ
LMOf2365_2496 ssb-2; single-strand binding protein
LMOf2365_0054 ssb-1; single-strand binding protein
LMOf2365_0005 recF; DNA replication and repair protein RecF
LMOf2365_1479 recO; recombination protein O
LMOf2365_2682 recR; recombination protein RecR
LMOf2365_1417 recA; recA protein
LMOf2365_1587 polA; DNA polymerase I
LMOf2365_1552 ruvA; holliday junction DNA helicase RuvA
LMOf2365_1551 ruvB; holliday junction DNA helicase RuvB
LMOf2365_1839 recG; ATP-dependent DNA helicase RecG
LMOf2365_1528 putative helicase, RecD/TraA family
LMOf2365_1596 dnaE; DNA polymerase III, alpha subunit
LMOf2365_1337 polC; DNA polymerase III, alpha chain, Gram-positive type
LMOf2365_0002 dnaN; DNA polymerase III, beta subunit
LMOf2365_2684 dnaX; DNA polymerase III, gamma and tau subunits
LMOf2365_1500 conserved hypothetical protein
LMOf2365_0177 holB; DNA polymerase III, delta subunit
LMOf2365_1852 priA; primosomal protein N`
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:lmf03000]
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03021 Transcription machinery [BR:lmf03021]
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03019 Messenger RNA biogenesis [BR:lmf03019]
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03041 Spliceosome
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03011 Ribosome [BR:lmf03011]
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03009 Ribosome biogenesis [BR:lmf03009]
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03016 Transfer RNA biogenesis [BR:lmf03016]
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03012 Translation factors [BR:lmf03012]
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03110 Chaperones and folding catalysts [BR:lmf03110]
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04131 Membrane trafficking [BR:lmf04131]
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04121 Ubiquitin system [BR:lmf04121]
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03051 Proteasome [BR:lmf03051]
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03032 DNA replication proteins [BR:lmf03032]
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03036 Chromosome and associated proteins [BR:lmf03036]
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03400 DNA repair and recombination proteins [BR:lmf03400]
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LMOf2365_1017 ogt-2; methylated-DNA--protein-cysteine methyltransferase
LMOf2365_0617 phrB; deoxyribodipyrimidine photolyase
LMOf2365_1236 ung-2; uracil-DNA glycosylase
LMOf2365_0402 ung-1; uracil-DNA glycosylase
LMOf2365_0949 putative DNA-3-methyladenine glycosylase
LMOf2365_1713 mutY; A/G-specific adenine glycosylase
LMOf2365_1923 nth; endonuclease III
LMOf2365_0172 conserved hypothetical protein
LMOf2365_1643 MutT/nudix family protein
LMOf2365_1262 MutT/nudix family protein
LMOf2365_2339 MutT/nudix family protein
LMOf2365_1693 MutT/nudix family protein
LMOf2365_1715 dUTPase family protein
LMOf2365_0093 ada; Ada regulatory protein
LMOf2365_2276 putative Ada regulatory protein
LMOf2365_1661 tag; DNA-3-methyladenine glycosylase I
LMOf2365_1586 mutM; formamidopyrimidine-DNA glycosylase
LMOf2365_1807 exoA; exodeoxyribonuclease
LMOf2365_1468 nfo; endonuclease IV
LMOf2365_1544 recJ; single-stranded-DNA-specific exonuclease RecJ
LMOf2365_1783 ligA; DNA ligase, NAD-dependent
LMOf2365_1587 polA; DNA polymerase I
LMOf2365_2461 uvrA; excinuclease ABC, A subunit
LMOf2365_2462 uvrB; excinuclease ABC, B subunit
LMOf2365_1243 uvrC; excinuclease ABC, C subunit
LMOf2365_1784 pcrA; ATP-dependent DNA helicase PcrA
LMOf2365_0274 rpoB; DNA-directed RNA polymerase, beta subunit
LMOf2365_0275 rpoC; DNA-directed RNA polymerase, beta' subunit
LMOf2365_2579 rpoA; DNA-directed RNA polymerase, alpha subunit
LMOf2365_2532 rpoE; DNA-directed RNA polymerase, delta subunit
LMOf2365_1854 rpoZ; DNA-directed RNA polymerase, omega subunit
LMOf2365_0225 mfd; transcription-repair coupling factor
LMOf2365_1422 mutS-2; DNA mismatch repair protein MutS
LMOf2365_1241 mutS-1; DNA mismatch repair protein MutS
LMOf2365_1423 mutL; DNA mismatch repair protein MutL
LMOf2365_1378 xseA; exodeoxyribonuclease VII, large subunit
LMOf2365_1379 xseB; exodeoxyribonuclease VII, small subunit
LMOf2365_1596 dnaE; DNA polymerase III, alpha subunit
LMOf2365_1337 polC; DNA polymerase III, alpha chain, Gram-positive type
LMOf2365_0002 dnaN; DNA polymerase III, beta subunit
LMOf2365_1500 conserved hypothetical protein
LMOf2365_0177 holB; DNA polymerase III, delta subunit
LMOf2365_2684 dnaX; DNA polymerase III, gamma and tau subunits
LMOf2365_2496 ssb-2; single-strand binding protein
LMOf2365_0054 ssb-1; single-strand binding protein
LMOf2365_1528 putative helicase, RecD/TraA family
LMOf2365_1417 recA; recA protein
LMOf2365_1552 ruvA; holliday junction DNA helicase RuvA
LMOf2365_1551 ruvB; holliday junction DNA helicase RuvB
LMOf2365_1852 priA; primosomal protein N`
LMOf2365_1666 SbcC exonuclease family protein
LMOf2365_1667 putative exonuclease SbcD
LMOf2365_0245 radA; DNA repair protein RadA
LMOf2365_0005 recF; DNA replication and repair protein RecF
LMOf2365_1839 recG; ATP-dependent DNA helicase RecG
LMOf2365_1479 recO; recombination protein O
LMOf2365_2682 recR; recombination protein RecR
LMOf2365_1385 recN; DNA repair protein RecN
LMOf2365_1920 recU; recombination protein U
LMOf2365_2300 addA; ATP-dependent nuclease, subunit A
LMOf2365_2301 addB; ATP-dependent nuclease, subunit B
LMOf2365_0007 gyrA; DNA gyrase, A subunit
LMOf2365_0006 gyrB; DNA gyrase, B subunit
LMOf2365_1293 topA; DNA topoisomerase I
LMOf2365_1963 hup; DNA-binding protein HU
LMOf2365_2745 recQ; ATP-dependent DNA helicase RecQ
LMOf2365_1971 putative ATP-dependent DNA helicase RecQ
LMOf2365_1998 putative DNA-damage-inducible protein P
LMOf2365_2656 ImpB/MucB/SamB family protein
LMOf2365_1320 lexA; LexA repressor
LMOf2365_1717 RecX family protein
LMOf2365_1240 PHP domain protein
LMOf2365_1928 ATP-dependent helicase DinG
LMOf2365_2187 nrdA; ribonucleoside-diphosphate reductase, alpha subunit
LMOf2365_2186 nrdB; ribonucleoside-diphosphate reductase, beta subunit
LMOf2365_1597 DHH subfamily 1 protein
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03048 rpoE; DNA-directed RNA polymerase subunit delta
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03700 recU; recombination protein U
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K02347 polX; DNA polymerase (family X)
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:lmf03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Listeria monocytogenes F2365 (serotype 4b)