09100 Metabolism
09120 Genetic Information Processing
09121 Transcription
09122 Translation
09123 Folding, sorting and degradation
09124 Replication and repair
03030 DNA replication [PATH:mham03030]
03410 Base excision repair [PATH:mham03410]
J450_11510 endonuclease IV J450_11160 uracil-DNA glycosylase J450_07685 adenine glycosylase J450_05040 5-hydroxymethyluracil DNA glycosylase J450_05565 DNA-3-methyladenine glycosylase J450_03695 exonuclease III J450_11140 endonuclease V J450_01970 DNA polymerase I J450_01500 ssDNA exonuclease RecJ J450_03610 ligA; NAD-dependent DNA ligase LigA
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] K02335 polA; DNA polymerase I [EC:2.7.7.7] K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
03420 Nucleotide excision repair [PATH:mham03420]
03430 Mismatch repair [PATH:mham03430]
03440 Homologous recombination [PATH:mham03440]
03450 Non-homologous end-joining
03460 Fanconi anemia pathway
09126 Chromosome
09125 Information processing in viruses
09130 Environmental Information Processing
09140 Cellular Processes
09150 Organismal Systems
09160 Human Diseases
09180 Brite Hierarchies
09181 Protein families: metabolism
09182 Protein families: genetic information processing
03000 Transcription factors [BR:mham03000]
03021 Transcription machinery [BR:mham03021]
03019 Messenger RNA biogenesis [BR:mham03019]
03041 Spliceosome
03011 Ribosome [BR:mham03011]
03009 Ribosome biogenesis [BR:mham03009]
03016 Transfer RNA biogenesis [BR:mham03016]
03012 Translation factors [BR:mham03012]
03110 Chaperones and folding catalysts [BR:mham03110]
04131 Membrane trafficking [BR:mham04131]
04121 Ubiquitin system [BR:mham04121]
03051 Proteasome [BR:mham03051]
03032 DNA replication proteins [BR:mham03032]
03036 Chromosome and associated proteins [BR:mham03036]
03400 DNA repair and recombination proteins [BR:mham03400]
J450_11435 methylated-DNA--protein-cysteine methyltransferase J450_11160 uracil-DNA glycosylase J450_07685 adenine glycosylase J450_11510 endonuclease IV J450_02565 nucleoside triphosphate pyrophosphohydrolase J450_08440 deoxyuridine 5'-triphosphate nucleotidohydrolase J450_05565 DNA-3-methyladenine glycosylase J450_05040 5-hydroxymethyluracil DNA glycosylase J450_03695 exonuclease III J450_11140 endonuclease V J450_01500 ssDNA exonuclease RecJ J450_03610 ligA; NAD-dependent DNA ligase LigA J450_01970 DNA polymerase I J450_00035 excinuclease ABC subunit A J450_00545 excinuclease ABC subunit B J450_10855 uvrC; excinuclease ABC subunit C J450_04380 uvrD; DNA-dependent helicase J450_06030 rpoB; DNA-directed RNA polymerase subunit beta J450_06020 DNA-directed RNA polymerase subunit beta' J450_08045 DNA-directed RNA polymerase subunit alpha J450_08885 DNA-directed RNA polymerase subunit omega J450_09450 transcription-repair coupling factor J450_06665 DNA mismatch repair protein MutS J450_05020 DNA mismatch repair protein MutL J450_10785 DNA mismatch repair protein MutH J450_00505 sbcB; exonuclease I J450_12015 exodeoxyribonuclease VII small subunit J450_02940 dnaE; DNA polymerase III subunit alpha J450_04485 DNA polymerase III subunit beta J450_05170 DNA polymerase III subunit chi J450_11570 DNA polymerase III subunit delta J450_05895 DNA polymerase III subunit delta' J450_10025 DNA polymerase III subunit epsilon J450_05325 DNA polymerase III subunit psi J450_04145 single-stranded DNA-binding protein J450_00030 single-stranded DNA-binding protein J450_03310 DNA adenine methylase J450_11205 exodeoxyribonuclease V subunit beta J450_08375 exodeoxyribonuclease V subunit gamma J450_03195 exodeoxyribonuclease V subunit alpha J450_04330 recombinase RecA J450_03375 Holliday junction DNA helicase RuvA J450_03380 ruvB; Holliday junction DNA helicase RuvB J450_09675 ruvC; Holliday junction resolvase J450_04045 endodeoxyribonuclease J450_03135 primosome assembly protein PriA J450_10010 primosomal replication protein N J450_11535 DNA repair protein RadA J450_03450 recF; recombinase F J450_06140 ATP-dependent DNA helicase RecG J450_06960 ATP-dependent DNA helicase RecG J450_05480 transcriptional regulator J450_02205 recO; DNA repair protein RecO J450_03440 recR; recombinase RecR J450_04915 recombinase J450_04690 DNA recombinase J450_02035 CRISPR-associated protein Cas1 J450_02195 ATP-binding protein J450_10240 DNA gyrase subunit A J450_02095 gyrB; DNA gyrase subunit B J450_00595 topoisomerase I J450_04780 transcriptional regulator J450_01865 hypothetical protein J450_03485 fis; Fis family transcriptional regulator J450_01245 transcriptional regulator J450_01220 transcriptional regulator J450_10875 ATP-dependent DNA helicase RecQ J450_02000 DNA-binding protein J450_09720 DNA polymerase IV J450_10790 LexA family transcriptional regulator J450_09230 antirepressor J450_04335 recombination protein RecX J450_03790 ATP-dependent DNA helicase Rep J450_00065 ATP-dependent helicase J450_00990 ribonucleotide-diphosphate reductase subunit alpha J450_09380 hypothetical protein J450_00985 ribonucleotide-diphosphate reductase subunit beta J450_09385 ribonucleotide reductase
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K01520 dut; dUTP diphosphatase [EC:3.6.1.23] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K02335 polA; DNA polymerase I [EC:2.7.7.7] K03701 uvrA; excinuclease ABC subunit A K03702 uvrB; excinuclease ABC subunit B K03703 uvrC; excinuclease ABC subunit C K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] K03555 mutS; DNA mismatch repair protein MutS K03572 mutL; DNA mismatch repair protein MutL K03573 mutH; DNA mismatch repair protein MutH K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] K03111 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] K03553 recA; recombination protein RecA K03550 ruvA; holliday junction DNA helicase RuvA K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] K02686 priB; primosomal replication protein N K04485 radA; DNA repair protein RadA/Sms K03629 recF; DNA replication and repair protein RecF K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03584 recO; DNA repair protein RecO (recombination protein O) K06187 recR; recombination protein RecR K03631 recN; DNA repair protein RecN (Recombination protein N) K03554 rdgC; recombination associated protein RdgC K15342 cas1; CRISP-associated protein Cas1 K06915 herA; DNA double-strand break repair helicase HerA and related ATPase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K05787 hupA; DNA-binding protein HU-alpha K07455 recT; recombination protein RecT K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein K04764 ihfA; integration host factor subunit alpha K05788 ihfB; integration host factor subunit beta K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] K03746 hns; DNA-binding protein H-NS K02346 dinB; DNA polymerase IV [EC:2.7.7.7] K01356 lexA; repressor LexA [EC:3.4.21.88] K14623 dinD; DNA-damage-inducible protein D K03565 recX; regulatory protein K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
03029 Mitochondrial biogenesis [BR:mham03029]
09183 Protein families: signaling and cellular processes
09185 Viral protein families
09184 RNA family
09190 Not Included in Pathway or Brite
KEGG Orthology (KO) - Mannheimia haemolytica D171 KEGG Orthology (KO) - Mannheimia haemolytica D171