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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:paf03030]
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03410 Base excision repair [PATH:paf03410]
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03420 Nucleotide excision repair [PATH:paf03420]
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03430 Mismatch repair [PATH:paf03430]
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03440 Homologous recombination [PATH:paf03440]
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 PAM18_1221 recJ; single-stranded-DNA-specific exonuclease RecJ
PAM18_0698 ssb; single-stranded DNA-binding protein
PAM18_0003 recF; recombination protein F
PAM18_4266 recO; DNA repair protein RecO
PAM18_3514 recR; recombination protein RecR
PAM18_1368 recA; recombinase A
PAM18_5614 polA; DNA polymerase I
PAM18_4071 ruvA; Holliday junction DNA helicase RuvA
PAM18_4070 ruvB; Holliday junction DNA helicase RuvB
PAM18_4072 ruvC; Holliday junction resolvase
PAM18_5465 recG; ATP-dependent DNA helicase RecG
PAM18_4373 recB; exodeoxyribonuclease V beta chain
PAM18_4374 recC; exodeoxyribonuclease V gamma chain
PAM18_4372 recD; exodeoxyribonuclease V alpha chain
PAM18_1306 dnaE; DNA polymerase III subunit alpha
PAM18_0002 dnaN; DNA polymerase III subunit beta
PAM18_3516 dnaX; DNA polymerase III subunits gamma and tau
PAM18_0950 holA; DNA polymerase III subunit delta
PAM18_2000 holB; DNA polymerase III subunit delta'
PAM18_1739 DNA polymerase III subunit epsilon
PAM18_3228 dnaQ; DNA polymerase III subunit epsilon
PAM18_1106 holC; DNA polymerase III subunit chi
PAM18_5165 priA; primosome assembly protein PriA
PAM18_2245 hypothetical protein
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04067 priC; primosomal replication protein N''
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03450 Non-homologous end-joining [PATH:paf03450]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:paf03000]
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03021 Transcription machinery [BR:paf03021]
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03019 Messenger RNA biogenesis [BR:paf03019]
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03041 Spliceosome
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03011 Ribosome [BR:paf03011]
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03009 Ribosome biogenesis [BR:paf03009]
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03016 Transfer RNA biogenesis [BR:paf03016]
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03012 Translation factors [BR:paf03012]
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03110 Chaperones and folding catalysts [BR:paf03110]
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04131 Membrane trafficking [BR:paf04131]
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04121 Ubiquitin system [BR:paf04121]
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03051 Proteasome [BR:paf03051]
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03032 DNA replication proteins [BR:paf03032]
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03036 Chromosome and associated proteins [BR:paf03036]
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03400 DNA repair and recombination proteins [BR:paf03400]
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PAM18_4053 ogt; methylated-DNA--protein-cysteinemethyltransferase
PAM18_4757 phr; deoxyribodipyrimidine photolyase
PAM18_4289 ung; uracil-DNA glycosylase
PAM18_0930 3-methyladenine DNA glycosylase
PAM18_5263 mutY; A/G specific adenine glycosylase
PAM18_1473 nth; endonuclease III
PAM18_3176 putative DNA helicase
PAM18_1792 putative 7,8-dihydro-8-oxoguanine-triphosphatase
PAM18_4491 hypothetical protein
PAM18_2195 putative pyrophosphatase
PAM18_1495 hypothetical protein
PAM18_5027 putative ADP-ribose pyrophosphatase
PAM18_5441 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase
PAM18_2925 ada; O6-methylguanine-DNA methyltransferase
PAM18_1389 putative methylated-DNA--protein-cysteine methyltransferase
PAM18_3360 alkA; DNA-3-methyladenine glycosidase II
PAM18_0010 tag; DNA-3-methyladenine glycosidase I
PAM18_0355 mutM; formamidopyrimidine-DNA glycosylase
PAM18_0765 putative nuclease
PAM18_2493 xthA; exonuclease III
PAM18_5452 crc; catabolite repression control protein
PAM18_1221 recJ; single-stranded-DNA-specific exonuclease RecJ
PAM18_3519 ligA; NAD-dependent DNA ligase LigA
PAM18_5614 polA; DNA polymerase I
PAM18_0696 uvrA; excinuclease ABC subunit A
PAM18_1825 uvrB; excinuclease ABC subunit B
PAM18_2408 uvrC; excinuclease ABC subunit C
PAM18_5565 uvrD; DNA-dependent helicase II
PAM18_0660 rpoB; DNA-directed RNA polymerase subunit beta
PAM18_0661 rpoC; DNA-directed RNA polymerase subunit beta'
PAM18_0692 rpoA; DNA-directed RNA polymerase subunit alpha
PAM18_5457 rpoZ; DNA-directed RNA polymerase subunit omega
PAM18_1958 mfd; transcription-repair coupling protein Mfd
PAM18_1326 mutS; DNA mismatch repair protein MutS
PAM18_5057 mutL; DNA mismatch repair protein
PAM18_4406 sbcB; exonuclease I
PAM18_1162 xseA; exodeoxyribonuclease VII large subunit
PAM18_0898 xseB; exodeoxyribonuclease VII small subunit
PAM18_1306 dnaE; DNA polymerase III subunit alpha
PAM18_0002 dnaN; DNA polymerase III subunit beta
PAM18_1106 holC; DNA polymerase III subunit chi
PAM18_0950 holA; DNA polymerase III subunit delta
PAM18_2000 holB; DNA polymerase III subunit delta'
PAM18_1739 DNA polymerase III subunit epsilon
PAM18_3228 dnaQ; DNA polymerase III subunit epsilon
PAM18_3516 dnaX; DNA polymerase III subunits gamma and tau
PAM18_0698 ssb; single-stranded DNA-binding protein
PAM18_4373 recB; exodeoxyribonuclease V beta chain
PAM18_4374 recC; exodeoxyribonuclease V gamma chain
PAM18_4372 recD; exodeoxyribonuclease V alpha chain
PAM18_1368 recA; recombinase A
PAM18_4071 ruvA; Holliday junction DNA helicase RuvA
PAM18_4070 ruvB; Holliday junction DNA helicase RuvB
PAM18_4072 ruvC; Holliday junction resolvase
PAM18_5165 priA; primosome assembly protein PriA
PAM18_2245 hypothetical protein
PAM18_4371 putative exonuclease
PAM18_0703 putative RecF/RecN/SMC N terminal domain protein
PAM18_4370 sbcD; exonuclease SbcD
PAM18_4703 radA; DNA repair protein RadA
PAM18_0003 recF; recombination protein F
PAM18_5465 recG; ATP-dependent DNA helicase RecG
PAM18_4266 recO; DNA repair protein RecO
PAM18_3514 recR; recombination protein RecR
PAM18_4871 recN; DNA repair protein RecN
PAM18_1706 rdgC; recombination associated protein
PAM18_2618 cas1; CRISPR-associated protein
PAM18_4397 hypothetical protein
PAM18_2888 putative KU domain protein
PAM18_2902 ligD; ATP-dependent DNA ligase
PAM18_1804 gyrA; DNA gyrase subunit A
PAM18_0004 gyrB; DNA gyrase subunit B
PAM18_2796 pslN; putative DNA topoisomerase
PAM18_1949 topA; DNA topoisomerase I
PAM18_5468 putative DNA-binding protein
PAM18_3240 hupB; DNA-binding protein HU
PAM18_1000 putative DNA binding protein
PAM18_2430 recT; recombination and repair protein
PAM18_4964 fis; DNA-binding protein Fis
PAM18_2235 ihfA; integration host factor subunit alpha
PAM18_1811 ihfB; integration host factor subunit beta
PAM18_1621 recQ; ATP-dependent DNA helicase RecQ
PAM18_4116 dinB; DNA polymerase IV
PAM18_1953 lexA; LexA repressor
PAM18_3155 polB; DNA polymerase II
PAM18_4367 hypothetical protein
PAM18_4368 hypothetical protein
PAM18_4369 dnaE2; error-prone DNA polymerase
PAM18_1369 recX; recombination regulator RecX
PAM18_5416 rep; ATP-dependent DNA helicase Rep
PAM18_4000 dinG; ATP-dependent DNA helicase DinG
PAM18_1697 putative ATP-dependent DNA helicase
PAM18_3877 nrdA; ribonucleotide-diphosphate reductase subunit alpha
PAM18_5618 nrdJa; NrdJa
PAM18_3878 nrdB; ribonucleotide-diphosphate reductase subunit beta
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04067 priC; primosomal replication protein N''
K03546 sbcC; DNA repair protein SbcC/Rad50
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K15342 cas1; CRISP-associated protein Cas1
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K07455 recT; recombination protein RecT
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:paf03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Pseudomonas aeruginosa M18