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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:paj03030]
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03410 Base excision repair [PATH:paj03410]
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03420 Nucleotide excision repair [PATH:paj03420]
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03430 Mismatch repair [PATH:paj03430]
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03440 Homologous recombination [PATH:paj03440]
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 PAJ_2404 recJ; single-stranded-DNA-specific exonuclease RecJ
PAJ_3432 ssb; single-strand binding protein Ssb
PAJ_3249 recF; DNA replication and repair protein RecF
PAJ_2182 recO; DNA repair protein RecO
PAJ_0356 recR; recombination protein RecR
PAJ_2309 recA; protein RecA
PAJ_3158 polA; DNA polymerase I PolA
PAJ_1515 ruvA; Holliday junction DNA helicase RuvA
PAJ_1514 ruvB; Holliday junction DNA helicase RuvB
PAJ_1516 ruvC; Crossover junction endodeoxyribonuclease RuvC
PAJ_3144 recG; ATP-dependent DNA helicase RecG
PAJ_2382 recB; exodeoxyribonuclease V beta chain RecB
PAJ_2384 recC; exodeoxyribonuclease V gamma chain RecC
PAJ_2381 recD; exodeoxyribonuclease V alpha chain RecD
PAJ_0154 dnaE; DNA polymerase III alpha subunit DnaE
PAJ_3250 dnaN; DNA polymerase III beta subunit DnaN
PAJ_0354 dnaX; DNA polymerase III tau subunit DnaX
PAJ_0449 holA; DNA polymerase III delta subunit HolA
PAJ_0835 holB; DNA polymerase III delta' subunit HolB
PAJ_0176 dnaQ; DNA polymerase III epsilon subunit DnaQ
PAJ_1499 holE; DNA polymerase III theta subunit HolE
PAJ_3643 holC; DNA polymerase III chi subunit HolC
PAJ_3750 holD; DNA polymerase III psi subunit HolD
PAJ_3070 priA; primosomal protein N' PriA
PAJ_2750 priB; primosomal replication protein Prib
PAJ_0351 priC; primosomal replication protein N' PriC
PAJ_3229 dnaT; primosomal protein I DnaT
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
K02317 dnaT; DNA replication protein DnaT
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:paj03000]
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03021 Transcription machinery [BR:paj03021]
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03019 Messenger RNA biogenesis [BR:paj03019]
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03041 Spliceosome
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03011 Ribosome [BR:paj03011]
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03009 Ribosome biogenesis [BR:paj03009]
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03016 Transfer RNA biogenesis [BR:paj03016]
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03012 Translation factors [BR:paj03012]
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03110 Chaperones and folding catalysts [BR:paj03110]
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04131 Membrane trafficking [BR:paj04131]
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04121 Ubiquitin system [BR:paj04121]
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03051 Proteasome [BR:paj03051]
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03032 DNA replication proteins [BR:paj03032]
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03036 Chromosome and associated proteins [BR:paj03036]
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03400 DNA repair and recombination proteins [BR:paj03400]
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PAJ_0513 ogt; methylated-DNA--protein-cysteine methyltransferase Ogt
PAJ_0480 phrB; deoxyribodipyrimidine photo-lyase PhrB
PAJ_2195 ung; uracil-DNA glycosylase
PAJ_2461 mutY; A/G-specific adenine glycosylase MutY
PAJ_1120 nth; endonuclease III Nth
PAJ_0076 mutT; mutator MutT protein MutT
PAJ_3124 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
PAJ_1891 alkB; alkylated DNA repair protein AlkB
PAJ_2636 mug; G/U mismatch-specific DNA glycosylase Mug
PAJ_0933 uracil-DNA glycosylase family protein hypothetical protein
PAJ_2499 uracil-DNA glycosylase family protein
PAJ_0512 ada; putative ADA regulatory protein Ada
PAJ_3231 tag; DNA-3-methyladenine glycosylase I Tag
PAJ_3119 mutM; formamidopyrimidine-DNA glycosylase MutM
PAJ_0488 nei; endonuclease VIII Nei
PAJ_1422 xthA; exodeoxyribonuclease III XthA
PAJ_1849 nfo; probable endonuclease IV Nfo
PAJ_3384 nfi; endonuclease V Nfi
PAJ_2404 recJ; single-stranded-DNA-specific exonuclease RecJ
PAJ_3138 yicF; DNA ligase YicF
PAJ_2044 ligA; DNA ligase LigA
PAJ_3158 polA; DNA polymerase I PolA
PAJ_3431 uvrA; UvrABC system protein A UvrA
PAJ_0540 uvrB; UvrABC system protein B UvrB
PAJ_0743 uvrC; UvrABC system protein C UvrC
PAJ_1030 cho; exconuclease Cho
PAJ_3329 uvrD; DNA helicase II UvrD
PAJ_3376 rpoB; DNA-directed RNA polymerase beta chain RpoB
PAJ_3377 rpoC; DNA-directed RNA polymerase beta' chain RpoC
PAJ_2821 rpoA; DNA-directed RNA polymerase alpha chain RpoA
PAJ_3140 rpoZ; DNA-directed RNA polymerase omega chain RpoZ
PAJ_0849 mfd; transcription-repair coupling factor Mfd
PAJ_2314 mutS; DNA mismatch repair protein MutS
PAJ_2766 mutL; DNA mismatch repair protein MutL
PAJ_2393 mutH; DNA mismatch repair protein MutH
PAJ_1751 sbcB; exodeoxyribonuclease I SbcB
PAJ_2138 xseA; probable exodeoxyribonuclease VII large subunit XseA
PAJ_0304 xseB; probable exodeoxyribonuclease VII small subunit XseB
PAJ_1500 exoX; exodeoxyribonuclease X exoX
PAJ_0154 dnaE; DNA polymerase III alpha subunit DnaE
PAJ_3250 dnaN; DNA polymerase III beta subunit DnaN
PAJ_3643 holC; DNA polymerase III chi subunit HolC
PAJ_0449 holA; DNA polymerase III delta subunit HolA
PAJ_0835 holB; DNA polymerase III delta' subunit HolB
PAJ_0176 dnaQ; DNA polymerase III epsilon subunit DnaQ
PAJ_0354 dnaX; DNA polymerase III tau subunit DnaX
PAJ_3750 holD; DNA polymerase III psi subunit HolD
PAJ_1499 holE; DNA polymerase III theta subunit HolE
PAJ_3432 ssb; single-strand binding protein Ssb
PAJ_2890 dam; DNA adenine methylase Dam
PAJ_1627 vsr; very short patch repair protein Vsr
PAJ_2382 recB; exodeoxyribonuclease V beta chain RecB
PAJ_2384 recC; exodeoxyribonuclease V gamma chain RecC
PAJ_2381 recD; exodeoxyribonuclease V alpha chain RecD
PAJ_2309 recA; protein RecA
PAJ_1515 ruvA; Holliday junction DNA helicase RuvA
PAJ_1514 ruvB; Holliday junction DNA helicase RuvB
PAJ_1516 ruvC; Crossover junction endodeoxyribonuclease RuvC
PAJ_3070 priA; primosomal protein N' PriA
PAJ_2750 priB; primosomal replication protein Prib
PAJ_0351 priC; primosomal replication protein N' PriC
PAJ_3229 dnaT; primosomal protein I DnaT
PAJ_0276 sbcC; exonuclease SbcC
PAJ_0277 sbcD; nuclease SbcCD subunit D
PAJ_3755 radA; DNA repair protein RadA
PAJ_3249 recF; DNA replication and repair protein RecF
PAJ_3144 recG; ATP-dependent DNA helicase RecG
PAJ_2182 recO; DNA repair protein RecO
PAJ_0356 recR; recombination protein RecR
PAJ_2198 recN; DNA repair protein RecN
PAJ_0273 rdgC; recombination associated protein RdgC
PAJ_1871 yejH; helicase YejH
PAJ_3659 yjgR; ATPase YjgR
PAJ_1902 gyrA; DNA gyrase subunit A GyrA
PAJ_3248 gyrB; DNA gyrase subunit B GyrB
PAJ_1379 topA; DNA topoisomerase I TopA
PAJ_3386 hupA; DNA-binding protein HU-alpha HupA
PAJ_0326 hupB; DNA-binding protein HU-beta HupB
PAJ_2802 fis; DNA-binding protein Fis
PAJ_1049 ihfA; integration host factor alpha-subunit IhfA
PAJ_0677 ihfB; integration host factor beta-subunit IhfB
PAJ_3337 recQ; ATP-dependent DNA helicase RecQ
PAJ_1413 hns; DNA-binding protein H-NS Hns
PAJ_0612 hns; DNA-binding protein H-NS Hns
PAJ_p0052 hns; DNA-binding protein HNS
PAJ_0215 dinB; DNA polymerase IV DinB
PAJ_0773 umuC; DNA polymerase V subunit UmuC
PAJ_1106 umuC; nucleotidyl transferase/DNA polymerase DNA repair protein UmuC
PAJ_2530 umuC; protein UmuC
PAJ_2523 UV protection protein
PAJ_1105 umuD; SOS-response transcriptional repressor UmuD
PAJ_3416 lexA; LexA repressor LexA
PAJ_0037 polB; DNA polymerase II PolB
PAJ_0798 dinI; DNA-damage-inducible protein I DinI
PAJ_2308 recX; regulatory protein RecX
PAJ_3302 rep; ATP-dependent DNA helicase Rep
PAJ_0721 helD; helicase IV HelD
PAJ_0579 dinG; probable ATP-dependent helicase DinG
PAJ_1456 yoaA; probable ATP-dependent helicase YoaA
PAJ_2265 nrdE; ribonucleoside-diphosphate reductase 2 alpha subunit NrdE
PAJ_1904 nrdA; ribonucleoside-diphosphate reductase 1 alpha subunit NrdA
PAJ_1905 nrdB; ribonucleoside-diphosphate reductase 1 beta subunit NrdB
PAJ_2266 nrdF; ribonucleoside-diphosphate reductase 2 beta subunit NrdF
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K05984 cho; excinuclease Cho [EC:3.1.25.-]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
K02317 dnaT; DNA replication protein DnaT
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K19789 radD; DNA repair protein RadD
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K03746 hns; DNA-binding protein H-NS
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03502 umuC; DNA polymerase V
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K12149 dinI; DNA-damage-inducible protein I
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03658 helD; DNA helicase IV [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:paj03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Pantoea ananatis AJ13355