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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:plm03030]
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03410 Base excision repair [PATH:plm03410]
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03420 Nucleotide excision repair [PATH:plm03420]
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03430 Mismatch repair [PATH:plm03430]
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03440 Homologous recombination [PATH:plm03440]
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 Plim_0674 single-stranded-DNA-specific exonuclease RecJ
Plim_2626 single-strand binding protein
Plim_0725 DNA repair protein RecO
Plim_0694 recombination protein RecR
Plim_2553 recA protein
Plim_3011 DNA polymerase I
Plim_2446 helix-hairpin-helix motif protein
Plim_2430 Holliday junction DNA helicase RuvB
Plim_2444 crossover junction endodeoxyribonuclease RuvC
Plim_0908 DEAD/DEAH box helicase domain protein
Plim_2653 AAA-4 family protein
Plim_1265 DNA polymerase III, alpha subunit
Plim_0036 DNA polymerase III, beta subunit
Plim_0692 DNA polymerase III, subunits gamma and tau
Plim_3591 DNA polymerase III, delta subunit
Plim_1351 DNA-directed DNA polymerase
Plim_1374 primosomal protein N'
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:plm03000]
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03021 Transcription machinery [BR:plm03021]
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03019 Messenger RNA biogenesis [BR:plm03019]
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03041 Spliceosome [BR:plm03041]
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03011 Ribosome [BR:plm03011]
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03009 Ribosome biogenesis [BR:plm03009]
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03016 Transfer RNA biogenesis [BR:plm03016]
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03012 Translation factors [BR:plm03012]
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03110 Chaperones and folding catalysts [BR:plm03110]
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04131 Membrane trafficking [BR:plm04131]
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04121 Ubiquitin system [BR:plm04121]
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03051 Proteasome [BR:plm03051]
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03032 DNA replication proteins [BR:plm03032]
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03036 Chromosome and associated proteins [BR:plm03036]
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03400 DNA repair and recombination proteins [BR:plm03400]
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Plim_1430 DNA photolyase FAD-binding protein
Plim_3349 A/G-specific adenine glycosylase
Plim_0613 endonuclease III
Plim_3895 NUDIX hydrolase
Plim_0950 methylated-DNA/protein-cysteine methyltransferase
Plim_3755 deoxyribodipyrimidine photolyase-related protein
Plim_0200 phage SPO1 DNA polymerase-related protein
Plim_1386 Uracil-DNA glycosylase superfamily
Plim_2633 DNA-formamidopyrimidine glycosylase
Plim_2581 Endonuclease/exonuclease/phosphatase
Plim_0383 apurinic endonuclease Apn1
Plim_0509 conserved hypothetical protein
Plim_0674 single-stranded-DNA-specific exonuclease RecJ
Plim_2844 DNA ligase, NAD-dependent
Plim_3011 DNA polymerase I
Plim_1595 excinuclease ABC, A subunit
Plim_0682 ABC transporter related protein
Plim_3242 ABC transporter related protein
Plim_0981 excinuclease ABC, B subunit
Plim_4113 excinuclease ABC C subunit domain protein
Plim_1235 UvrD/REP helicase
Plim_3457 UvrD/REP helicase
Plim_0849 UvrD/REP helicase
Plim_0443 DNA-directed RNA polymerase, beta subunit
Plim_0472 DNA-directed RNA polymerase, beta' subunit
Plim_0499 DNA-directed RNA polymerase, alpha subunit
Plim_0602 RNA polymerase alpha subunit domain protein
Plim_2215 aspartic acid-rich protein aspolin2-1-like protein
Plim_2053 DNA-directed RNA polymerase, omega subunit
Plim_3728 transcription-repair coupling factor
Plim_4057 DNA mismatch repair protein MutS
Plim_1838 DNA mismatch repair protein MutL
Plim_0430 exodeoxyribonuclease VII, large subunit
Plim_1991 exodeoxyribonuclease VII, small subunit
Plim_1265 DNA polymerase III, alpha subunit
Plim_0036 DNA polymerase III, beta subunit
Plim_3591 DNA polymerase III, delta subunit
Plim_1351 DNA-directed DNA polymerase
Plim_0692 DNA polymerase III, subunits gamma and tau
Plim_2626 single-strand binding protein
Plim_4275 D12 class N6 adenine-specific DNA methyltransferase
Plim_2553 recA protein
Plim_2446 helix-hairpin-helix motif protein
Plim_2430 Holliday junction DNA helicase RuvB
Plim_2444 crossover junction endodeoxyribonuclease RuvC
Plim_1374 primosomal protein N'
Plim_3342 DNA repair exonuclease-like protein
Plim_0908 DEAD/DEAH box helicase domain protein
Plim_2653 AAA-4 family protein
Plim_0725 DNA repair protein RecO
Plim_0694 recombination protein RecR
Plim_1377 Exodeoxyribonuclease V
Plim_1441 CRISPR-associated protein Cas1
Plim_0106 DNA topoisomerase (ATP-hydrolyzing)
Plim_2267 DNA gyrase, A subunit
Plim_0105 DNA topoisomerase (ATP-hydrolyzing)
Plim_0450 DNA topoisomerase type IIA subunit B region 2 domain protein
Plim_3565 ATP-binding region ATPase domain protein
Plim_2200 DNA topoisomerase I
Plim_1271 histone family protein DNA-binding protein
Plim_1229 ATP-dependent DNA helicase RecQ
Plim_0305 DNA-directed DNA polymerase
Plim_2243 LexA repressor
Plim_1327 conserved hypothetical protein
Plim_1326 nucleotidyltransferase/DNA polymerase
Plim_1325 DNA polymerase III, alpha subunit
Plim_1730 DNA-directed DNA polymerase
Plim_0188 helicase c2
Plim_1076 DEAD/DEAH box helicase domain protein
Plim_3077 DEAD/DEAH box helicase domain protein
Plim_3000 DEAD/H associated domain protein
Plim_3177 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
Plim_0422 phosphoesterase RecJ domain protein
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K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03048 rpoE; DNA-directed RNA polymerase subunit delta
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03547 sbcD; DNA repair protein SbcD/Mre11
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K15342 cas1; CRISP-associated protein Cas1
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K02347 polX; DNA polymerase (family X)
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:plm03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Planctopirus limnophila