09100 Metabolism
09120 Genetic Information Processing
09121 Transcription
09122 Translation
09123 Folding, sorting and degradation
09124 Replication and repair
03030 DNA replication [PATH:ppuh03030]
B479_17620 DNA polymerase III subunit epsilon B479_02245 DNA polymerase III subunit epsilon B479_23285 DNA polymerase III subunit epsilon B479_06085 dnaE; DNA polymerase III subunit alpha B479_18200 DNA polymerase III subunits gamma and tau B479_07510 DNA polymerase III subunit delta' B479_23425 holA; DNA polymerase III subunit delta B479_05190 DNA polymerase III subunit chi B479_00255 DNA polymerase III subunit beta B479_23815 replicative DNA helicase B479_08585 replicative DNA helicase B479_20095 Putative DnaB-like replicative helicase B479_10265 replicative DNA helicase B479_02420 dnaG; DNA primase B479_02910 single-stranded DNA-binding protein B479_17625 rnhA; ribonuclease H B479_06080 rnhB; ribonuclease HII B479_00945 DNA polymerase I B479_18235 ligA; NAD-dependent DNA ligase LigA B479_24300 ligB; NAD-dependent DNA ligase LigB
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] K02316 dnaG; DNA primase [EC:2.7.7.101] K03111 ssb; single-strand DNA-binding protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4] K03470 rnhB; ribonuclease HII [EC:3.1.26.4] K02335 polA; DNA polymerase I [EC:2.7.7.7] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
03410 Base excision repair [PATH:ppuh03410]
03420 Nucleotide excision repair [PATH:ppuh03420]
03430 Mismatch repair [PATH:ppuh03430]
B479_06175 DNA mismatch repair protein MutS B479_23945 mutL; DNA mismatch repair protein B479_26495 uvrD; DNA-dependent helicase II B479_13735 putative ATP-dependent helicase B479_21575 sbcB; exonuclease I B479_05415 xseA; exodeoxyribonuclease VII large subunit B479_03125 exodeoxyribonuclease VII small subunit B479_08510 exodeoxyribonuclease X B479_05705 single-stranded-DNA-specific exonuclease RecJ B479_02910 single-stranded DNA-binding protein B479_06085 dnaE; DNA polymerase III subunit alpha B479_00255 DNA polymerase III subunit beta B479_18200 DNA polymerase III subunits gamma and tau B479_23425 holA; DNA polymerase III subunit delta B479_07510 DNA polymerase III subunit delta' B479_17620 DNA polymerase III subunit epsilon B479_02245 DNA polymerase III subunit epsilon B479_23285 DNA polymerase III subunit epsilon B479_05190 DNA polymerase III subunit chi B479_18235 ligA; NAD-dependent DNA ligase LigA B479_24300 ligB; NAD-dependent DNA ligase LigB
K03555 mutS; DNA mismatch repair protein MutS K03572 mutL; DNA mismatch repair protein MutL K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K03111 ssb; single-strand DNA-binding protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
03440 Homologous recombination [PATH:ppuh03440]
B479_05705 single-stranded-DNA-specific exonuclease RecJ B479_02910 single-stranded DNA-binding protein B479_00260 recF; recombination protein F B479_21120 recO; DNA repair protein RecO B479_18190 recR; recombination protein RecR B479_06190 recA; recombinase A B479_00945 DNA polymerase I B479_20310 ruvA; Holliday junction DNA helicase RuvA B479_20305 ruvB; Holliday junction DNA helicase RuvB B479_20315 ruvC; Holliday junction resolvase B479_26285 ATP-dependent DNA helicase RecG B479_22700 exodeoxyribonuclease V subunit beta B479_22705 exodeoxyribonuclease V subunit gamma B479_22695 exodeoxyribonuclease V subunit alpha B479_06085 dnaE; DNA polymerase III subunit alpha B479_00255 DNA polymerase III subunit beta B479_18200 DNA polymerase III subunits gamma and tau B479_23425 holA; DNA polymerase III subunit delta B479_07510 DNA polymerase III subunit delta' B479_17620 DNA polymerase III subunit epsilon B479_02245 DNA polymerase III subunit epsilon B479_23285 DNA polymerase III subunit epsilon B479_05190 DNA polymerase III subunit chi B479_24910 primosome assembly protein PriA
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K03111 ssb; single-strand DNA-binding protein K03629 recF; DNA replication and repair protein RecF K03584 recO; DNA repair protein RecO (recombination protein O) K06187 recR; recombination protein RecR K03553 recA; recombination protein RecA K02335 polA; DNA polymerase I [EC:2.7.7.7] K03550 ruvA; holliday junction DNA helicase RuvA K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
03450 Non-homologous end-joining [PATH:ppuh03450]
03460 Fanconi anemia pathway
09126 Chromosome
09125 Information processing in viruses
09130 Environmental Information Processing
09140 Cellular Processes
09150 Organismal Systems
09160 Human Diseases
09180 Brite Hierarchies
09181 Protein families: metabolism
09182 Protein families: genetic information processing
03000 Transcription factors [BR:ppuh03000]
03021 Transcription machinery [BR:ppuh03021]
03019 Messenger RNA biogenesis [BR:ppuh03019]
03041 Spliceosome
03011 Ribosome [BR:ppuh03011]
03009 Ribosome biogenesis [BR:ppuh03009]
03016 Transfer RNA biogenesis [BR:ppuh03016]
03012 Translation factors [BR:ppuh03012]
03110 Chaperones and folding catalysts [BR:ppuh03110]
04131 Membrane trafficking [BR:ppuh04131]
04121 Ubiquitin system [BR:ppuh04121]
03051 Proteasome [BR:ppuh03051]
03032 DNA replication proteins [BR:ppuh03032]
B479_17625 rnhA; ribonuclease H B479_10615 DNA-cytosine methyltransferase B479_08490 C-5 cytosine-specific DNA methylase B479_10125 DNA-cytosine methyltransferase B479_03675 C-5 cytosine-specific DNA methylase B479_26300 histone family protein DNA-binding protein B479_09335 histone family protein DNA-binding protein B479_05170 histone family protein DNA-binding protein B479_10065 ihfA; integration host factor subunit alpha B479_06870 ihfB; integration host factor subunit beta B479_00250 dnaA; chromosomal replication initiation protein B479_23815 replicative DNA helicase B479_08585 replicative DNA helicase B479_20095 Putative DnaB-like replicative helicase B479_10265 replicative DNA helicase B479_20100 hypothetical protein B479_02420 dnaG; DNA primase B479_02910 single-stranded DNA-binding protein B479_06085 dnaE; DNA polymerase III subunit alpha B479_00255 DNA polymerase III subunit beta B479_05190 DNA polymerase III subunit chi B479_23425 holA; DNA polymerase III subunit delta B479_07510 DNA polymerase III subunit delta' B479_17620 DNA polymerase III subunit epsilon B479_02245 DNA polymerase III subunit epsilon B479_23285 DNA polymerase III subunit epsilon B479_18200 DNA polymerase III subunits gamma and tau B479_06080 rnhB; ribonuclease HII B479_00945 DNA polymerase I B479_18235 ligA; NAD-dependent DNA ligase LigA B479_24300 ligB; NAD-dependent DNA ligase LigB B479_06365 DNA replication initiation factor B479_06830 DNA gyrase subunit A B479_00265 gyrB; DNA gyrase subunit B B479_24025 DNA topoisomerase IV subunit A B479_24040 DNA topoisomerase IV subunit B B479_16495 DNA topoisomerase B479_08315 DNA topoisomerase I subunit omega B479_17060 DNA topoisomerase III
K03469 rnhA; ribonuclease HI [EC:3.1.26.4] K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] K05787 hupA; DNA-binding protein HU-alpha K03530 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta K04764 ihfA; integration host factor subunit alpha K05788 ihfB; integration host factor subunit beta K02313 dnaA; chromosomal replication initiator protein K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] K02315 dnaC; DNA replication protein DnaC K02316 dnaG; DNA primase [EC:2.7.7.101] K03111 ssb; single-strand DNA-binding protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K03470 rnhB; ribonuclease HII [EC:3.1.26.4] K02335 polA; DNA polymerase I [EC:2.7.7.7] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K10763 hda; DnaA-homolog protein K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
03036 Chromosome and associated proteins [BR:ppuh03036]
03400 DNA repair and recombination proteins [BR:ppuh03400]
B479_12665 methylated-DNA--protein-cysteine methyltransferase B479_04190 deoxyribodipyrimidine photolyase B479_21230 uracil-DNA glycosylase B479_23505 3-methyladenine DNA glycosylase B479_01865 A/G-specific adenine glycosylase B479_20865 endonuclease III B479_12125 DEAD/DEAH box helicase B479_21855 hypothetical protein B479_12910 MutT/nudix family protein B479_13190 MutT/nudix family protein B479_15680 NUDIX hydrolase B479_26175 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase B479_03965 methylated-DNA--protein-cysteine methyltransferase B479_11410 deoxyribodipyrimidine photolyase-like protein B479_14250 alpha-ketoglutarate-dependent dioxygenase AlkB B479_03960 DNA-3-methyladenine glycosylase II B479_14270 alcohol dehydrogenase B479_00640 DNA-3-methyladenine glycosylase I B479_25095 formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase B479_11590 exodeoxyribonuclease III B479_15020 exonuclease III B479_26195 exodeoxyribonuclease III Xth B479_05705 single-stranded-DNA-specific exonuclease RecJ B479_18235 ligA; NAD-dependent DNA ligase LigA B479_24300 ligB; NAD-dependent DNA ligase LigB B479_00945 DNA polymerase I B479_02900 uvrA; excinuclease ABC subunit A B479_14160 excinuclease ABC subunit A B479_07555 excinuclease ABC subunit B B479_17410 uvrC; excinuclease ABC subunit C B479_26495 uvrD; DNA-dependent helicase II B479_13735 putative ATP-dependent helicase B479_02720 rpoB; DNA-directed RNA polymerase subunit beta B479_02725 DNA-directed RNA polymerase subunit beta' B479_02880 DNA-directed RNA polymerase subunit alpha B479_26240 rpoZ; DNA-directed RNA polymerase subunit omega B479_08365 transcription-repair coupling factor B479_06175 DNA mismatch repair protein MutS B479_23945 mutL; DNA mismatch repair protein B479_21575 sbcB; exonuclease I B479_05415 xseA; exodeoxyribonuclease VII large subunit B479_03125 exodeoxyribonuclease VII small subunit B479_08510 exodeoxyribonuclease X B479_06085 dnaE; DNA polymerase III subunit alpha B479_00255 DNA polymerase III subunit beta B479_05190 DNA polymerase III subunit chi B479_23425 holA; DNA polymerase III subunit delta B479_07510 DNA polymerase III subunit delta' B479_17620 DNA polymerase III subunit epsilon B479_02245 DNA polymerase III subunit epsilon B479_23285 DNA polymerase III subunit epsilon B479_18200 DNA polymerase III subunits gamma and tau B479_02910 single-stranded DNA-binding protein B479_10620 DNA mismatch endonuclease Vsr B479_22700 exodeoxyribonuclease V subunit beta B479_22705 exodeoxyribonuclease V subunit gamma B479_22695 exodeoxyribonuclease V subunit alpha B479_06190 recA; recombinase A B479_20310 ruvA; Holliday junction DNA helicase RuvA B479_20305 ruvB; Holliday junction DNA helicase RuvB B479_20315 ruvC; Holliday junction resolvase B479_24910 primosome assembly protein PriA B479_07790 SMC domain-containing protein B479_07795 nuclease SbcCD subunit D B479_22500 DNA repair protein RadA B479_00260 recF; recombination protein F B479_26285 ATP-dependent DNA helicase RecG B479_21120 recO; DNA repair protein RecO B479_18190 recR; recombination protein RecR B479_22995 DNA repair protein RecN B479_06535 rdgC; recombination associated protein B479_00110 hypothetical protein B479_21540 hypothetical protein B479_13265 Ku family containing protein B479_13240 ligD; ATP-dependent DNA ligase B479_06830 DNA gyrase subunit A B479_00265 gyrB; DNA gyrase subunit B B479_16495 DNA topoisomerase B479_08315 DNA topoisomerase I subunit omega B479_26300 histone family protein DNA-binding protein B479_09335 histone family protein DNA-binding protein B479_05170 histone family protein DNA-binding protein B479_23550 fis; global DNA-binding transcriptional dual regulator Fis B479_10065 ihfA; integration host factor subunit alpha B479_06870 ihfB; integration host factor subunit beta B479_19195 ATP-dependent DNA helicase RecQ B479_23100 ATP-dependent DNA helicase RecQ B479_20375 DNA polymerase IV B479_13720 LexA repressor B479_08330 LexA repressor B479_09785 DNA polymerase II B479_13715 hypothetical protein B479_13710 hypothetical protein B479_13705 dnaE2; error-prone DNA polymerase B479_06195 recX; recombination regulator RecX B479_26065 ATP-dependent DNA helicase Rep B479_20725 dinG; ATP-dependent DNA helicase DinG B479_20810 DEAD/DEAH box helicase B479_21025 DEAD/DEAH box helicase B479_20480 ribonucleotide-diphosphate reductase subunit alpha B479_20485 ribonucleotide-diphosphate reductase subunit beta
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K01520 dut; dUTP diphosphatase [EC:3.6.1.23] K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K02335 polA; DNA polymerase I [EC:2.7.7.7] K03701 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A K03702 uvrB; excinuclease ABC subunit B K03703 uvrC; excinuclease ABC subunit C K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] K03555 mutS; DNA mismatch repair protein MutS K03572 mutL; DNA mismatch repair protein MutL K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K03111 ssb; single-strand DNA-binding protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] K03553 recA; recombination protein RecA K03550 ruvA; holliday junction DNA helicase RuvA K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] K03546 sbcC; DNA repair protein SbcC/Rad50 K03547 sbcD; DNA repair protein SbcD/Mre11 K04485 radA; DNA repair protein RadA/Sms K03629 recF; DNA replication and repair protein RecF K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03584 recO; DNA repair protein RecO (recombination protein O) K06187 recR; recombination protein RecR K03631 recN; DNA repair protein RecN (Recombination protein N) K03554 rdgC; recombination associated protein RdgC K19789 radD; DNA repair protein RadD K06915 herA; DNA double-strand break repair helicase HerA and related ATPase K10979 ku; DNA end-binding protein Ku K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K05787 hupA; DNA-binding protein HU-alpha K03530 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein K04764 ihfA; integration host factor subunit alpha K05788 ihfB; integration host factor subunit beta K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] K02346 dinB; DNA polymerase IV [EC:2.7.7.7] K01356 lexA; repressor LexA [EC:3.4.21.88] K01356 lexA; repressor LexA [EC:3.4.21.88] K02336 polB; DNA polymerase II [EC:2.7.7.7] K14160 imuA; protein ImuA K14161 imuB; protein ImuB K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] K03565 recX; regulatory protein K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
03029 Mitochondrial biogenesis [BR:ppuh03029]
09183 Protein families: signaling and cellular processes
09185 Viral protein families
09184 RNA family
09190 Not Included in Pathway or Brite
KEGG Orthology (KO) - Pseudomonas putida HB3267 KEGG Orthology (KO) - Pseudomonas putida HB3267