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09100 Metabolism
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09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:prw03030]
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03410 Base excision repair [PATH:prw03410]
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03420 Nucleotide excision repair [PATH:prw03420]
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03430 Mismatch repair [PATH:prw03430]
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03440 Homologous recombination [PATH:prw03440]
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PsycPRwf_0790 exonuclease RecJ
PsycPRwf_1992 single-strand binding protein
PsycPRwf_0004 DNA replication and repair protein RecF
PsycPRwf_0376 DNA repair protein RecO
PsycPRwf_1728 DNA replication and repair protein RecR
PsycPRwf_1981 recA protein
PsycPRwf_2048 DNA polymerase I
PsycPRwf_1424 Holliday junction DNA helicase subunit RuvA
PsycPRwf_1452 Holliday junction DNA helicase subunit RuvB
PsycPRwf_1433 Holliday junction endonuclease RuvC
PsycPRwf_2338 ATP-dependent DNA helicase RecG
PsycPRwf_1212 DNA helicase/exodeoxyribonuclease V, beta subunit
PsycPRwf_1213 Exonuclease V gamma subunit-like protein
PsycPRwf_1211 exodeoxyribonuclease V, alpha subunit
PsycPRwf_1232 DNA polymerase III, alpha subunit
PsycPRwf_0003 DNA polymerase III, beta subunit
PsycPRwf_1454 DNA polymerase III, gamma subunit
PsycPRwf_1832 DNA polymerase III, delta subunit
PsycPRwf_1391 DNA polymerase III, delta prime subunit
PsycPRwf_0553 Exonuclease, RNase T and DNA polymerase III
PsycPRwf_0052 DNA polymerase III, chi subunit
PsycPRwf_0573 replication restart DNA helicase PriA
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:prw03000]
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03021 Transcription machinery [BR:prw03021]
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03019 Messenger RNA biogenesis [BR:prw03019]
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03041 Spliceosome
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03011 Ribosome [BR:prw03011]
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03009 Ribosome biogenesis [BR:prw03009]
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03016 Transfer RNA biogenesis [BR:prw03016]
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03012 Translation factors [BR:prw03012]
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03110 Chaperones and folding catalysts [BR:prw03110]
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04131 Membrane trafficking [BR:prw04131]
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04121 Ubiquitin system [BR:prw04121]
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03051 Proteasome [BR:prw03051]
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03032 DNA replication proteins [BR:prw03032]
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03036 Chromosome and associated proteins [BR:prw03036]
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03400 DNA repair and recombination proteins [BR:prw03400]
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PsycPRwf_1002 methylated-DNA--protein-cysteine methyltransferase
PsycPRwf_0753 deoxyribodipyrimidine photo-lyase type I
PsycPRwf_1590 Uracil-DNA glycosylase
PsycPRwf_0168 A/G-specific DNA-adenine glycosylase
PsycPRwf_0880 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
PsycPRwf_1921 NUDIX hydrolase
PsycPRwf_1604 8-oxo-dGTPase
PsycPRwf_1826 deoxyuridine 5'-triphosphate nucleotidohydrolase
PsycPRwf_0495 DNA-3-methyladenine glycosylase II
PsycPRwf_0382 DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase
PsycPRwf_1258 Exodeoxyribonuclease III
PsycPRwf_0790 exonuclease RecJ
PsycPRwf_0473 DNA ligase, NAD-dependent
PsycPRwf_2048 DNA polymerase I
PsycPRwf_1995 Excinuclease ABC subunit A
PsycPRwf_1554 Excinuclease ABC subunit B
PsycPRwf_0205 Excinuclease ABC subunit C
PsycPRwf_0254 UvrD/REP helicase
PsycPRwf_2036 DNA-directed RNA polymerase subunit beta
PsycPRwf_2035 DNA-directed RNA polymerase subunit beta'
PsycPRwf_0450 DNA-directed RNA polymerase subunit alpha
PsycPRwf_0576 DNA-directed RNA polymerase subunit omega
PsycPRwf_1636 transcription-repair coupling factor
PsycPRwf_2017 DNA mismatch repair protein MutS
PsycPRwf_0819 ATP-binding region, ATPase domain protein
PsycPRwf_1369 Exodeoxyribonuclease VII large subunit
PsycPRwf_1370 hypothetical protein
PsycPRwf_1066 Exodeoxyribonuclease X
PsycPRwf_1232 DNA polymerase III, alpha subunit
PsycPRwf_0003 DNA polymerase III, beta subunit
PsycPRwf_0052 DNA polymerase III, chi subunit
PsycPRwf_1832 DNA polymerase III, delta subunit
PsycPRwf_1391 DNA polymerase III, delta prime subunit
PsycPRwf_0553 Exonuclease, RNase T and DNA polymerase III
PsycPRwf_1454 DNA polymerase III, gamma subunit
PsycPRwf_1992 single-strand binding protein
PsycPRwf_1212 DNA helicase/exodeoxyribonuclease V, beta subunit
PsycPRwf_1213 Exonuclease V gamma subunit-like protein
PsycPRwf_1211 exodeoxyribonuclease V, alpha subunit
PsycPRwf_1981 recA protein
PsycPRwf_1424 Holliday junction DNA helicase subunit RuvA
PsycPRwf_1452 Holliday junction DNA helicase subunit RuvB
PsycPRwf_1433 Holliday junction endonuclease RuvC
PsycPRwf_0573 replication restart DNA helicase PriA
PsycPRwf_1099 SMC domain protein
PsycPRwf_1100 nuclease SbcCD, D subunit
PsycPRwf_0827 DNA replication and repair protein RadA
PsycPRwf_0004 DNA replication and repair protein RecF
PsycPRwf_2338 ATP-dependent DNA helicase RecG
PsycPRwf_0376 DNA repair protein RecO
PsycPRwf_1728 DNA replication and repair protein RecR
PsycPRwf_0145 DNA replication and repair protein RecN
PsycPRwf_0873 DNA gyrase subunit A
PsycPRwf_0005 DNA gyrase subunit B
PsycPRwf_0393 DNA topoisomerase I
PsycPRwf_0864 Topoisomerase IB-like protein
PsycPRwf_1626 histone family protein DNA-binding protein
PsycPRwf_1623 transcriptional regulator, Fis family
PsycPRwf_2314 histone family protein DNA-binding protein
PsycPRwf_1586 histone family protein DNA-binding protein
PsycPRwf_1923 DNA-directed DNA polymerase
PsycPRwf_1982 Uncharacterized protein-like protein
PsycPRwf_1824 ATP-dependent DNA helicase Rep
PsycPRwf_1577 ribonucleoside-diphosphate reductase class Ia alpha subunit
PsycPRwf_1578 ribonucleoside-diphosphate reductase class Ia beta subunit
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:prw03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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