KEGG Orthology (KO) - Psychrobacter sp. PRwf-1

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:prw03030]
     03410 Base excision repair [PATH:prw03410]
     03420 Nucleotide excision repair [PATH:prw03420]
     03430 Mismatch repair [PATH:prw03430]
     03440 Homologous recombination [PATH:prw03440]
       PsycPRwf_0790 exonuclease RecJ
       PsycPRwf_1992 single-strand binding protein
       PsycPRwf_0004 DNA replication and repair protein RecF
       PsycPRwf_0376 DNA repair protein RecO
       PsycPRwf_1728 DNA replication and repair protein RecR
       PsycPRwf_1981 recA protein
       PsycPRwf_2048 DNA polymerase I
       PsycPRwf_1424 Holliday junction DNA helicase subunit RuvA
       PsycPRwf_1452 Holliday junction DNA helicase subunit RuvB
       PsycPRwf_1433 Holliday junction endonuclease RuvC
       PsycPRwf_2338 ATP-dependent DNA helicase RecG
       PsycPRwf_1212 DNA helicase/exodeoxyribonuclease V, beta subunit
       PsycPRwf_1213 Exonuclease V gamma subunit-like protein
       PsycPRwf_1211 exodeoxyribonuclease V, alpha subunit
       PsycPRwf_1232 DNA polymerase III, alpha subunit
       PsycPRwf_0003 DNA polymerase III, beta subunit
       PsycPRwf_1454 DNA polymerase III, gamma subunit
       PsycPRwf_1832 DNA polymerase III, delta subunit
       PsycPRwf_1391 DNA polymerase III, delta prime subunit
       PsycPRwf_0553 Exonuclease, RNase T and DNA polymerase III
       PsycPRwf_0052 DNA polymerase III, chi subunit
       PsycPRwf_0573 replication restart DNA helicase PriA
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
     03450 Non-homologous end-joining
     03460 Fanconi anemia pathway
 
   09126 Chromosome
 
   09125 Information processing in viruses
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:prw03000]
     03021 Transcription machinery [BR:prw03021]
     03019 Messenger RNA biogenesis [BR:prw03019]
     03041 Spliceosome
     03011 Ribosome [BR:prw03011]
     03009 Ribosome biogenesis [BR:prw03009]
     03016 Transfer RNA biogenesis [BR:prw03016]
     03012 Translation factors [BR:prw03012]
     03110 Chaperones and folding catalysts [BR:prw03110]
     04131 Membrane trafficking [BR:prw04131]
     04121 Ubiquitin system [BR:prw04121]
     03051 Proteasome [BR:prw03051]
     03032 DNA replication proteins [BR:prw03032]
     03036 Chromosome and associated proteins [BR:prw03036]
     03400 DNA repair and recombination proteins [BR:prw03400]
       PsycPRwf_1002 methylated-DNA--protein-cysteine methyltransferase
       PsycPRwf_0753 deoxyribodipyrimidine photo-lyase type I
       PsycPRwf_1590 Uracil-DNA glycosylase
       PsycPRwf_0168 A/G-specific DNA-adenine glycosylase
       PsycPRwf_0880 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
       PsycPRwf_1921 NUDIX hydrolase
       PsycPRwf_1604 8-oxo-dGTPase
       PsycPRwf_1826 deoxyuridine 5'-triphosphate nucleotidohydrolase
       PsycPRwf_0495 DNA-3-methyladenine glycosylase II
       PsycPRwf_0382 DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase
       PsycPRwf_1258 Exodeoxyribonuclease III
       PsycPRwf_0790 exonuclease RecJ
       PsycPRwf_0473 DNA ligase, NAD-dependent
       PsycPRwf_2048 DNA polymerase I
       PsycPRwf_1995 Excinuclease ABC subunit A
       PsycPRwf_1554 Excinuclease ABC subunit B
       PsycPRwf_0205 Excinuclease ABC subunit C
       PsycPRwf_0254 UvrD/REP helicase
       PsycPRwf_2036 DNA-directed RNA polymerase subunit beta
       PsycPRwf_2035 DNA-directed RNA polymerase subunit beta'
       PsycPRwf_0450 DNA-directed RNA polymerase subunit alpha
       PsycPRwf_0576 DNA-directed RNA polymerase subunit omega
       PsycPRwf_1636 transcription-repair coupling factor
       PsycPRwf_2017 DNA mismatch repair protein MutS
       PsycPRwf_0819 ATP-binding region, ATPase domain protein
       PsycPRwf_1369 Exodeoxyribonuclease VII large subunit
       PsycPRwf_1370 hypothetical protein
       PsycPRwf_1066 Exodeoxyribonuclease X
       PsycPRwf_1232 DNA polymerase III, alpha subunit
       PsycPRwf_0003 DNA polymerase III, beta subunit
       PsycPRwf_0052 DNA polymerase III, chi subunit
       PsycPRwf_1832 DNA polymerase III, delta subunit
       PsycPRwf_1391 DNA polymerase III, delta prime subunit
       PsycPRwf_0553 Exonuclease, RNase T and DNA polymerase III
       PsycPRwf_1454 DNA polymerase III, gamma subunit
       PsycPRwf_1992 single-strand binding protein
       PsycPRwf_1212 DNA helicase/exodeoxyribonuclease V, beta subunit
       PsycPRwf_1213 Exonuclease V gamma subunit-like protein
       PsycPRwf_1211 exodeoxyribonuclease V, alpha subunit
       PsycPRwf_1981 recA protein
       PsycPRwf_1424 Holliday junction DNA helicase subunit RuvA
       PsycPRwf_1452 Holliday junction DNA helicase subunit RuvB
       PsycPRwf_1433 Holliday junction endonuclease RuvC
       PsycPRwf_0573 replication restart DNA helicase PriA
       PsycPRwf_1099 SMC domain protein
       PsycPRwf_1100 nuclease SbcCD, D subunit
       PsycPRwf_0827 DNA replication and repair protein RadA
       PsycPRwf_0004 DNA replication and repair protein RecF
       PsycPRwf_2338 ATP-dependent DNA helicase RecG
       PsycPRwf_0376 DNA repair protein RecO
       PsycPRwf_1728 DNA replication and repair protein RecR
       PsycPRwf_0145 DNA replication and repair protein RecN
       PsycPRwf_0873 DNA gyrase subunit A
       PsycPRwf_0005 DNA gyrase subunit B
       PsycPRwf_0393 DNA topoisomerase I
       PsycPRwf_0864 Topoisomerase IB-like protein
       PsycPRwf_1626 histone family protein DNA-binding protein
       PsycPRwf_1623 transcriptional regulator, Fis family
       PsycPRwf_2314 histone family protein DNA-binding protein
       PsycPRwf_1586 histone family protein DNA-binding protein
       PsycPRwf_1923 DNA-directed DNA polymerase
       PsycPRwf_1982 Uncharacterized protein-like protein
       PsycPRwf_1824 ATP-dependent DNA helicase Rep
       PsycPRwf_1577 ribonucleoside-diphosphate reductase class Ia alpha subunit
       PsycPRwf_1578 ribonucleoside-diphosphate reductase class Ia beta subunit
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
     03029 Mitochondrial biogenesis [BR:prw03029]
 
   09183 Protein families: signaling and cellular processes
 
   09185 Viral protein families
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: May 2, 2024